List of metalloproteins for the workshop
FROM TSRI:
IDDescription
hcatHuman erythrocyte catalase structure at 1.5 A. Entire tetramer (C. Putnam)
adanCoordinates for ADA with Zn site (Doug)
nos_dimerNOS dimer (Robin)
FROM PDB:
IDDescription
1a01deoxyhemoglobin a; chain: a, b, c, d; engineered: synthetic beta globin gene; mutation: chain b, d, v1m, w37y; biological_unit: tetramer
1a0dxylose isomerase; chain: a, b, c, d; synonym: glucose isomerase; ec: 5.3.1.5; biological_unit: tetramer
1a4fhemoglobin; chain: a, b
1a5nurease; chain: a, b, c; ec: 3.5.1.5; engineered: yes; mutation: chain a, k217a; biological_unit: trimer
1a6mmyoglobin; chain: null; biological_unit: monomer
1a6nmyoglobin; chain: null; biological_unit: monomer
1a6qphosphatase 2c; chain: null; ec: 3.1.3.16; engineered: yes
1a9whemoglobin; chain: a, e, c, f; engineered: yes; other_details: human gower ii embryonic hemoglobin
1abmmanganese superoxide dismutase (e.c.1.15.1.1)
1aijphotosynthetic reaction center; chain: l, m, h, r, s, t
1akdcytochrome p450cam; chain: null; synonym: camphor monooxygenase; ec: 1.14.15.1; engineered: yes; biological_unit: monomer; other_details: heme linked by cys 357, substrate (1s)-camphor bound in two conformations, a and b
1alcalpha-*lactalbumin
1aopsulfite reductase hemoprotein; chain: null; synonym: sirhp; ec: 1.8.1.2; other_details: oxidized, siroheme fe(iii), [4fe-4s], +2
1aoxintegrin alpha 2 beta; chain: a, b; fragment: i domain; engineered: synthetic gene mutation: t137r, q138s, p139s, t338g
1aqrcu-metallothionein; chain: null; synonym: cu-mt; biological_unit: monomer
1atgperiplasmic molybdate-binding protein; chain: null; synonym: moda
1b0yhipip; chain: null; engineered: yes; mutation: h42q
1b1gcalbindin; chain: null; synonym: intestinal calcium-binding protein; engineered: yes; mutation: p43g; biological_unit: monomer
1b666-pyruvoyl tetrahydropterin synthase; chain: a, b; ec: 4.6.1.10; engineered: yes
1b9oalpha-lactalbumin; chain: a; biological_unit: monomer
1bk0isopenicillin n synthase; chain: null; engineered: yes; biological_unit: monomer
1brfrubredoxin; chain: null; synonym: pf rd
1bxaamicyanin; chain: null
1cllcalmodulin (vertebrate)
1dfxdesulfoferrodoxin; chain: null; biological_unit: probably active as a dimer
1ferferredoxin i (ph 6.5)
1h2ahydrogenase; chain: l, s; synonym: hydrogen: ferricytochrome-c3 oxidoreductase; ec: 1.12.2.1
1hcacarbonic anhydrase /ii$ (carbonate dehydratase) (/hca ii$) (e.c.4.2.1.1) ($p*h 6.5)
1hfefe-only hydrogenase (smaller subunit); chain: s, t; ec: 1.18.99.1; biological_unit: heterodimer; other_details: the fe-only hydrogenase from desulfovibrio desulfuricans has exactly the same sequence as the fe-only hydrogenase from desulfovibrio vulgaris (strain hildenborough); molecule: fe-only hydrogenase (larger subunit); chain: l, m; ec: 1.18.99.1; biological_unit: heterodimer; other_details: the fe-only hydrogenase from desulfovibrio desulfuricans has exactly the same sequence as the fe-only hydrogenase from desulfovibrio vulgaris (strain hildenborough)
1idointegrin; chain: null; fragment: i-domain; synonym: a-domain
1kcwceruloplasmin; chain: null; ec: 1.16.3.1; biological_unit: active as a monomer
1klndna polymerase i (klenow fragment) (e.c.2.7.7.7) mutant with asp 355 replaced by ala (d355a) complexed with dna
1lghlight harvesting complex ii; chain: a, b, d, e, g, h, j, k; synonym: lh ii, b800/850; biological_unit: octamer
1mromethyl-coenzyme m reductase; chain: a, b, c, d, e, f; ec: 1.8.-.-; biological_unit: hexamer of two alpha, two beta, and two gamma chains; other_details: mcr-ox-silent state, enzyme-substrate complex
1mrpferric iron binding protein; chain: null; synonym: fbp, hita, hfbp, major iron regulated protein, mirp; engineered: yes
1n2cnitrogenase molybdenum-iron protein; chain: a, b, c, d; fragment: chains a and c are the alpha chains, chains b and d are the beta chains; synonym: nitrogenase component i, dinitrogenase; ec: 1.18.6.1; biological_unit: tetramer of two alpha and two beta chains; molecule: nitrogenase iron protein; chain: e, f, g, h; synonym: nitrogenase component ii, nitrogenase reductase; ec: 1.18.6.1; biological_unit: homodimer; other_details: 2\:1 complex of homodimeric fe-protein and heterotetrameric mofe-protein
1plcplastocyanin (cu2+, ph 6.0)
1rb9rubredoxin; chain: null; engineered: yes
1rlaarginase; chain: a, b, c; ec: 3.5.3.1; other_details: ph 8.5
1soxsulfite oxidase; chain: a, b; ec: 1.8.3.1; biological_unit: dimer
1yaicopper, zinc superoxide dismutase; chain: a, b, c; synonym: cu, zn superoxide dismutase, cu, zn sod; ec: 1.15.1.1; engineered: yes; biological_unit: dimer
2azaazurin (oxidized)
2bbvblack beetle virus capsid protein (bbv) complexed with duplex rna
2bdpdna polymerase i; chain: a; fragment: residues 297-876; synonym: bf; engineered: yes; molecule: dna; chain: p, t; engineered: yes
2glsglutamine synthetase (e.c.6.3.1.2)
2kaumolecule: klebsiella aerogenes urease; ec: 3.5.1.5; synonyms: urea amidohydrolase, urease; engineered
2nodnitric oxide synthase; chain: a, b; fragment: oxygenase domain 65-498; ec: 1.14.13.39; engineered: yes; biological_unit: dimer; other_details: murine inducible
2nosinducible nitric oxide synthase; chain: null; fragment: oxygenase domain 115-498; ec: 1.14.13.39; engineered: yes; biological_unit: dimer
2occcytochrome c oxidase; chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z; synonym: ferrocytochrome c\:oxygen oxidoreductase; ec: 1.9.3.1; other_details: this enzyme is a hybrid protein complex and is a homodimer. one monomer is composed of 13 different subunits and seven metal centers, heme a, heme a3, cua, cub, mg, na and zn.
2pvbparvalbumin; chain: null; other_details: (pike pi 4.10)
2sodcu,zn superoxide dismutase (e.c.1.15.1.1)
2tpsthiamin phosphate synthase; chain: a, b; ec: 2.5.1.3; biological_unit: monomer; other_details: complexed with thiamin phosphate, pyrophosphate 2-
362ddna (5'-d(*tp*gp*cp*gp*cp*a)-3'); chain: a, b; engineered: yes
3minnitrogenase molybdenum iron protein; chain: a, b, c, d; ec: 1.18.6.1; biological_unit: heterotetramer
5acnaconitase (e.c.4.2.1.3) (inactive (3fe-4s) cluster form)
6fd17-fe ferredoxin i (fd1); chain: null; synonym: fd1
8cel1,4-beta-d-glucan cellobiohydrolase i; chain: null; fragment: catalytic domain, residues 1 - 434; synonym: exoglucanase, exocellulase; ec: 3.2.1.91; engineered: yes
9icadna polymerase beta; chain: a; ec: 2.7.7.7; engineered: yes; molecule: dna (5'-d(*cp*ap*tp*tp*ap*gp*a)-3') (dot) (5'-d(*tp*cp*tp*ap*ap*tp*g)-3'); chain: t, p; engineered: yes; other_details: soaked in the presence of datp(alpha)s (1 millimolar) and mncl2 (5 millimolar)
9ictdna polymerase beta; chain: a; ec: 2.7.7.7; engineered: yes; molecule: dna (5'-d(*cp*ap*tp*cp*tp*g)-3') (dot) (5'-d(*cp*ap*gp*ap*tp*g)-3'); chain: t, p; engineered: yes; other_details: soaked in the presence of dgtp (1 millimolar) and mncl2 (5 millimolar)
9ximd-*xylose isomerase (e.c.5.3.1.5) mutant with glu 186 replaced by gln (/e186q$) complex with xylose and mn