Recent PDB releases or updates: week of 11 July 2008

• 1gzm.pdb. signaling protein 24-may-02 1gzm Zn
  Title: structure of bovine rhodopsin in a trigonal crystal form
  Author: j. li
  Keywords: photoreceptor, retinal protein, visual pigment, g-protein coupled receptor, integral membrane protein, palmitate, phosphorylation
  
• 1h68.pdb. receptor 08-jun-01 1h68 Cl
  Title: sensory rhodopsin ii
  Author: a. royant, p. nollert, k. edman, r. neutze, e. m. landau, e. pebay-peyroula, j. navarro
  Keywords: photoreceptor, phototaxis
  
• 1xxx.pdb. lyase 09-nov-04 1xxx Cl Mg
  Title: crystal structure of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosis
  Author: g. kefala, s. panjikar, r. janowski, m. s. weiss, tb structural genomics consortium (tbsgc)
  Keywords: dapa, rv2753c, mycobacterium tuberculosis, lysine biosynthesis, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc, lyase
  
• 1z1z.pdb. viral protein 07-mar-05 1z1z He Hg (NMR)
  Title: nmr structure of the gpu tail protein from lambda bacteriophage
  Author: l. edmonds, k. maxwell, a. davidson, l. w. donaldson
  Keywords: tail protein, bacteriophage, viral protein
  
• 2dvj.pdb. signaling protein 31-jul-06 2dvj He Hg (NMR)
  Title: phosphorylated crk-ii
  Author: y. kobashigawa, f. inagaki
  Keywords: sh2, signal transduction, adapter molecule, signaling protein
  
• 2e5e.pdb. signaling protein 20-dec-06 2e5e He Hg (NMR, 15 structures)
  Title: solution structure of variable-type domain of human receptor for advanced glycation endproducts
  Author: s. matsumoto, t. yoshida, i. yasumatsu, h. yamamoto, y. kobayashi, t. ohkubo
  Keywords: signaling protein
  
• 2ei9.pdb. gene regulation 12-mar-07 2ei9
  Title: crystal structure of r1bm endonuclease domain
  Author: n. maita, h. aoyagi, m. osanai, m. shirakawa, h. fujiwara
  Keywords: gene regulation
  
• 2eyv.pdb. signaling protein 10-nov-05 2eyv He Hg (NMR)
  Title: sh2 domain of ct10-regulated kinase
  Author: y. kobashigawa, s. tanaka, f. inagaki
  Keywords: signaling protein
  
• 2eyw.pdb. signaling protein 10-nov-05 2eyw He Hg (NMR)
  Title: n-terminal sh3 domain of ct10-regulated kinase
  Author: y. kobashigawa, s. tanaka, f. inagaki
  Keywords: signaling protein
  
• 2eyx.pdb. signaling protein 10-nov-05 2eyx He Hg (NMR)
  Title: c-terminal sh3 domain of ct10-regulated kinase
  Author: y. kobashigawa, s. tanaka, f. inagaki
  Keywords: signaling protein
  
• 2eyy.pdb. signaling protein 10-nov-05 2eyy He Hg (NMR)
  Title: ct10-regulated kinase isoform i
  Author: y. kobashigawa, s. tanaka, f. inagaki
  Keywords: sh3, signaling protein
  
• 2eyz.pdb. signaling protein 10-nov-05 2eyz He Hg (NMR)
  Title: ct10-regulated kinase isoform ii
  Author: y. kobashigawa, s. tanaka, f. inagaki
  Keywords: sh3, signaling protein
  
• 2fot.pdb. metal binding, structural protein 13-jan-06 2fot Ca
  Title: crystal structure of the complex between calmodulin and alphaii-spectrin
  Author: m. simonovic, z. zhang, c. d. cianci, t. a. steitz, j. s. morrow
  Keywords: calmodulin binding domain, spectrin, metal binding, structural protein
  
• 2g92.pdb. ribonucleic acid 04-mar-06 2g92 F
  Title: crystal structure analysis of the rna dodecamer cgc-(nf2)- aauuagcg, with an incorporated 2,4-difluorotoluyl residue (nf2)
  Author: m. egli, f. li
  Keywords: 4-difluorotoluyl nucleoside, chemical modification, rna, rna interference, hydrogen bonding
  
• 2g9f.pdb. hydrolase 06-mar-06 2g9f Cl
  Title: crystal structure of intein-tagged mouse pngase c-terminal domain
  Author: x. zhou, g. zhao, l. wang, g. li, w. j. lennarz, h. schindelin
  Keywords: hydrolase
  
• 2g9g.pdb. hydrolase 06-mar-06 2g9g
  Title: crystal structure of his-tagged mouse pngase c-terminal domain
  Author: x. zhou, g. zhao, l. wang, g. li, w. j. lennarz, h. schindelin
  Keywords: hydrolase
  
• 2ghw.pdb. virus/viral protein/antibiotic 27-mar-06 2ghw Cl
  Title: crystal structure of sars spike protein receptor binding domain in complex with a neutralizing antibody, 80r
  Author: w. c. hwang, y. lin, e. santelli, j. sui, l. jaroszewski, b. stec, m. farzan, w. a. marasco, r. c. liddington
  Keywords: s protein, neutralizing antibody, virus/viral protein/antibiotic complex
  
• 2gp9.pdb. hydrolase 17-apr-06 2gp9
  Title: crystal structure of the slow form of thrombin in a self- inhibited conformation
  Author: a. pineda, z. chen, f. s. mathews, e. di cera
  Keywords: hydrolase
  
• 2hlk.pdb. hydrolase 08-jul-06 2hlk Mg
  Title: structure of recombinant haemophilus influenzae e(p4) acid phosphatase
  Author: j. j. tanner
  Keywords: dddd motif, class c nonspecific acid phosphatase, hydrolase
  
• 2hll.pdb. hydrolase 08-jul-06 2hll Mg W
  Title: structure of recombinant haemophilus influenzae e(p4) acid phosphatase complexed with tungstate
  Author: j. j. tanner
  Keywords: dddd motif, class c nonspecific acid phosphatase, hydrolase
  
• 2hps.pdb. luminescent protein 17-jul-06 2hps Se
  Title: crystal structure of coelenterazine-binding protein from renilla muelleri
  Author: g. stepanyuk, z. j. liu, e. s. vysotski, j. lee, j. p. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
  Keywords: coelenterazine-binding, southeast collaboratory for structural genomics, secsg, structural genomics, psi, protein structure initiative, luminescent protein
  
• 2hq8.pdb. structural genomics, unknown function 18-jul-06 2hq8 Ca
  Title: crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo form
  Author: g. stepanyuk, z. j. liu, e. s. vysotski, j. lee, j. p. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
  Keywords: renilla muelleri, psi, structural genomics, southeast collaboratory for structural genomics, protein structure initiative, secsg, unknown function
  
• 2jqv.pdb. structural genomics 07-jun-07 2jqv He Hg (NMR, 20 structures)
  Title: solution structure at3g28950.1 from arabidopsis thaliana
  Author: b. f. volkman, n. b. de la cruz, f. c. peterson, center for eukaryotic structural genomics (cesg)
  Keywords: structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
  
• 2jr4.pdb. ribonucleic acid 20-jun-07 2jr4 Ho (NMR, 11 structures)
  Title: nmr solution structure of the anticodon of e.coli trna-val3 with no modifications
  Author: f. a. p. vendeix, a. dziergowska, e. m. gustilo, w. d. graham, b. sproat, a. malkiewicz, p. f. agris
  Keywords: valine, trna, anticodon stem loop, trna domain, rna hairpin
  
• 2jr8.pdb. antimicrobial protein 21-jun-07 2jr8 He Hg (NMR, 20 structures)
  Title: solution structure of manduca sexta moricin
  Author: y. gong, h. dai, s. rayaprolu, r. huang, o. prakash, h. jiang
  Keywords: antimicrobial protein
  
• 2jsk.pdb. deoxyribonucleic acid 07-jul-07 2jsk Ho Br (NMR, 10 structures)
  Title: monomeric human telomere dna tetraplex with 3+1 strand fold topology, two edgewise loops and double-chain reversal loop, 16 g form 1, nmr, 10 structures
  Author: v. v. kuryavyi, a. t. phan, k. n. luu, d. j. patel
  Keywords: 3+1 strand folding, edgewise, double-chain reversal loops, nmr, form 1 16brg, 10 structures, dna
  
• 2jsm.pdb. deoxyribonucleic acid 09-jul-07 2jsm Ho (NMR, 10 structures)
  Title: monomeric human telomere dna tetraplex with 3+1 strand fold topology, two edgewise loops and double-chain reversal loop, nmr, 10 structures, form 1 natural
  Author: v. v. kuryavyi, a. t. phan, k. n. luu, d. j. patel
  Keywords: double-chain reversal loops; natural form 1, nmr, 10 structures, dna
  
• 2jtk.pdb. signaling protein 02-aug-07 2jtk He Hg (NMR, 20 structures)
  Title: a functional domain of a wnt signal protein
  Author: l. chen, y. shao, j. huang, j. zheng
  Keywords: domain, developmental protein, glycoprotein, secreted, wnt signaling pathway, signaling protein
  
• 2k3i.pdb. structural genomics, unknown function 08-may-08 2k3i He Hg (NMR, 20 structures)
  Title: solution nmr structure of protein yiis from shigella flexneri. northeast structural genomics consortium target sfr90
  Author: j. l. mills, k. k. singarapu, a. eletski, d. k. sukumaran, d. wang, m. jiang, c. ciccosanti, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
  Keywords: protein structure, psi, nesg, structural genomics, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 2k49.pdb. structural genomics, unknown function 31-may-08 2k49 He Hg (NMR, 20 structures)
  Title: solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
  Author: y. tang, d. wang, c. nwosu, m. maglaqui, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, unknown function, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2k58.pdb. transport protein 25-jun-08 2k58 Hg (NMR, 20 structures)
  Title: nmr structures of the first transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit
  Author: v. bondarenko, p. tang, y. xu
  Keywords: postsynaptic cell membrane, synapse, transmembrane, transport, transport protein
  
• 2k59.pdb. transport protein 25-jun-08 2k59 Hg (NMR, 20 structures)
  Title: nmr structures of the second transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit
  Author: v. bondarenko, p. tang, y. xu, v. yushmanov
  Keywords: postsynaptic cell membrane, synapse, transmembrane, transport, transport protein
  
• 2nlw.pdb. translation 20-oct-06 2nlw He Hg (NMR, 16 structures)
  Title: solution structure of the rrm domain of human eukaryotic initiation factor 3b
  Author: l. elantak, a. g. tzakos, n. locker, p. j. lukavsky
  Keywords: eukaryotic initiation factor 3 complex, rna recognition motif
  
• 2or3.pdb. chaperone 01-feb-07 2or3
  Title: pre-oxidation complex of human dj-1
  Author: a. c. witt, m. lakshminarasimhan, m. a. wilson
  Keywords: nucleophile elbow, chaperone
  
• 2oze.pdb. dna binding protein 26-feb-07 2oze Mg
  Title: the crystal structure of delta protein of psm19035 from streptoccocus pyogenes
  Author: a. cicek, w. weihofen, w. saenger
  Keywords: walker type atpases, dna segregation, psm19035, plasmid, dna binding protein
  
• 2p4n.pdb. transport protein 12-mar-07 2p4n Mg Zn (cryo-electron microscopy)
  Title: human monomeric kinesin (1bg2) and bovine tubulin (1jff) docked into the 9-angstrom cryo-em map of nucleotide-free kinesin complexed to the microtubule
  Author: c. v. sindelar, k. h. downing
  Keywords: atpase, transport protein
  
• 2pyg.pdb. isomerase 16-may-07 2pyg Ca
  Title: azotobacter vinelandii mannuronan c-5 epimerase alge4 a- module
  Author: h. j. rozeboom, t. m. bjerkan, k. h. kalk, h. ertesvag, s. holtan, f. l. aachmann, s. valla, b. w. dijkstra
  Keywords: epimerase, isomerase
  
• 2pyh.pdb. isomerase 16-may-07 2pyh Ca
  Title: azotobacter vinelandii mannuronan c-5 epimerase alge4 a- module complexed with mannuronan trisaccharide
  Author: h. j. rozeboom, t. m. bjerkan, k. h. kalk, h. ertesvag, s. holtan, f. l. aachman, s. valla, b. w. dijkstra
  Keywords: epimerase, mannuronic acid, isomerase
  
• 2q7v.pdb. oxidoreductase 07-jun-07 2q7v
  Title: crystal structure of deinococcus radiodurans thioredoxin reductase
  Author: d. a. r. sanders, j. obiero, s. a. bonderoff, m. m. goertzen
  Keywords: fad, flavoprotein, oxidoreductase, redox- active center
  
• 2qa7.pdb. actin binding 14-jun-07 2qa7
  Title: crystal structure of huntingtin-interacting protein 1 (hip1) coiled-coil domain with a basic surface suitable for hip-protein interactor (hippi)
  Author: q. niu, j. a. ybe
  Keywords: huntington's disease, apoptosis, coiled-coil, actin binding
  
• 2qc1.pdb. protein binding 18-jun-07 2qc1
  Title: crystal structure of the extracellular domain of the nicotinic acetylcholine receptor 1 subunit bound to alpha- bungarotoxin at 1.9 a resolution
  Author: c. d. dellisanti, y. yao, j. c. stroud, z. wang, l. chen
  Keywords: glycosylated protein, beta sandwich, cys-loop, buried hydrophilic residues, protein binding
  
• 2qds.pdb. hydrolase 21-jun-07 2qds Zn
  Title: crystal structure of the zinc carbapenemase cpha in complex with the inhibitor d-captopril
  Author: g. garau, o. dideberg
  Keywords: lactamase, inhibitor, zn, metal
  
• 2qdt.pdb. hydrolase 21-jun-07 2qdt Zn
  Title: structural basis for the broad-spectrum inhibition of metallo-{beta}-lactamases: l1- is38 complex
  Author: g. garau, o. dideberg
  Keywords: zn, metallo, lactamase, inhibitor, l1
  
• 2qfk.pdb. transport protein 27-jun-07 2qfk Fe
  Title: x-ray crystal structure analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from amphitrite ornata
  Author: v. s. de serrano, z. chen, m. f. davis, s. franzen
  Keywords: dhp, globin, heme protein, transport protein
  
• 2qic.pdb. antitumor protein, apoptosis 03-jul-07 2qic Zn
  Title: crystal structure of the ing1 phd finger in complex with a histone h3k4me3 peptide
  Author: p. v. pena, t. g. kutateladze, r. zhao, k. champagne
  Keywords: ing1, histone, h3k4me3, chromatin, antitumor protein, apoptosis
  
• 2qif.pdb. chaperone 04-jul-07 2qif Cu Ca
  Title: crystal structure of a metallochaperone with a tetranuclear cu(i) cluster
  Author: c. west, c. singleton, m. a. kihlken, n. e. le brun, a. m. hemmings
  Keywords: chaperone
  
• 2qio.pdb. unknown function 05-jul-07 2qio Cl
  Title: x-ray structure of enoyl-acyl carrier protein reductase from bacillus anthracis with triclosan
  Author: g. m. klein, b. d. santarsiero, a. d. mesecar
  Keywords: unknown function
  
• 2qj5.pdb. signaling protein 06-jul-07 2qj5
  Title: pyp ultra-high resolution of a bacterial photoreceptor
  Author: p. d. coureux, z. p. fan, v. stojanoff, u. k. genick
  Keywords: signaling protein
  
• 2qj7.pdb. signaling protein 06-jul-07 2qj7
  Title: pyp ultra-high resolution of a bacterial photoreceptor
  Author: p. d. coureux, z. p. fan, v. stojanoff, u. k. genick
  Keywords: pas domain, signal transduction, signaling protein
  
• 2qke.pdb. circadian clock protein 10-jul-07 2qke
  Title: wild type crystal structure of full length circadian clock protein kaib from thermosynechococcus elongatus bp-1
  Author: r. pattanayek, m. egli, s. pattanayek
  
  
• 2qkz.pdb. electron transport 12-jul-07 2qkz Hg Ni (NMR, 15 structures)
  Title: nickel-substituted rubredoxin from desulfovibrio vulgaris
  Author: b. j. goodfellow, s. g. nunes, b. f. volkman, j. j. g. moura, a. l. macedo, i. c. duarte, j. l. markley, i. moura
  Keywords: electron transport, iron, metal-binding
  
• 2ql0.pdb. electron transport 12-jul-07 2ql0 Hg Zn (NMR, 20 structures)
  Title: zinc-substituted rubredoxin from desulfovibrio vulgaris
  Author: b. j. goodfellow, s. g. nunes, b. f. volkman, j. g. moura, a. l. macedo, i. c. duarte, j. l. markley, i. moura
  Keywords: electron transport, iron, metal-binding
  
• 2qog.pdb. hydrolase 20-jul-07 2qog Ca
  Title: crotoxin b, the basic pla2 from crotalus durissus terrificus.
  Author: d. p. marchi-salvador, l. c. correa, m. r. m. fontes
  Keywords: calcium, hydrolase, lipid degradation, metal-binding, secreted, neurotoxin, presynaptic neurotoxin
  
• 2qwx.pdb. oxidoreductase 10-aug-07 2qwx Zn
  Title: crystal structure of quinone reductase ii
  Author: b. calamini, b. d. santarsiero, j. a. boutin, a. d. mesecar
  Keywords: cytoplasm, fad, flavoprotein, metal-binding, oxidoreductase, polymorphism, zinc
  
• 2qzw.pdb. hydrolase 17-aug-07 2qzw
  Title: secreted aspartic proteinase (sap) 1 from candida albicans
  Author: e. ruge, c. borelli, k. maskos, r. huber
  Keywords: candida albicans, aspartyl protease, cleavage on pair of basic residues, glycoprotein, hydrolase, protease, secreted, zymogen
  
• 2qzx.pdb. hydrolase 17-aug-07 2qzx
  Title: secreted aspartic proteinase (sap) 5 from candida albicans
  Author: j. h. lee, e. ruge, c. borelli, k. maskos, r. huber
  Keywords: candida albicans, aspartyl protease, cleavage on pair of basic residues, glycoprotein, hydrolase, protease, secreted, zymogen
  
• 2r2j.pdb. chaperone 25-aug-07 2r2j Se
  Title: crystal structure of human erp44
  Author: l. k. wang, s. j. li, f. sun, c. c. wang
  Keywords: crfs motif, chaperone, endoplasmic reticulum, stress response
  
• 2r4r.pdb. signaling protein 31-aug-07 2r4r
  Title: crystal structure of the human beta2 adrenoceptor
  Author: s. g. rasmussen, h. j. choi, d. m. rosenbaum, t. s. kobilka, f. s. thian, p. c. edwards, m. burghammer, v. r. ratnala, r. sanishvili, r. f. fischetti, g. f. schertler, w. i. weis, b. k. kobilka
  Keywords: g-protein coupled receptor, glycoprotein, lipoprotein, palmitate, phosphorylation, polymorphism, receptor, transducer, signaling protein
  
• 2r4s.pdb. signaling protein 31-aug-07 2r4s
  Title: crystal structure of the human beta2 adrenoceptor
  Author: s. g. rasmussen, h. j. choi, d. m. rosenbaum, t. s. kobilka, f. s. thian, p. c. edwards, m. burghammer, v. r. ratnala, r. sanishvili, r. f. fischetti, g. f. schertler, w. i. weis, b. k. kobilka
  Keywords: g-protein coupled receptor, glycoprotein, lipoprotein, palmitate, phosphorylation, polymorphism, receptor, transducer, signaling protein
  
• 2r6w.pdb. transcription 06-sep-07 2r6w
  Title: estrogen receptor alpha ligand-binding domain complexed to a serm
  Author: y. wang
  Keywords: zinc-finger
  
• 2r6y.pdb. transcription 06-sep-07 2r6y
  Title: estrogen receptor alpha ligand-binding domain in complex with a serm
  Author: y. wang
  Keywords: zinc-finger
  
• 2rfx.pdb. immune system 02-oct-07 2rfx
  Title: crystal structure of hla-b*5701, presenting the self peptide, lsspvtksf
  Author: j. k. archbold, w. a. macdonald, j. rossjohn, j. mccluskey
  Keywords: secreted, immune system
  
• 2rjg.pdb. isomerase 15-oct-07 2rjg
  Title: crystal structure of biosynthetic alaine racemase from escherichia coli
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 2rjh.pdb. isomerase 15-oct-07 2rjh
  Title: crystal structure of biosynthetic alaine racemase in d- cycloserine-bound form from escherichia coli
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 2rlg.pdb. antimicrobial protein 07-jul-07 2rlg (NMR, 10 structures)
  Title: nmr structure of the antimicrobial peptide rp-1 bound to sds micelles
  Author: s. bourbigot, e. dodd, c. horwood, v. booth
  Keywords: alpha-helix, amphipathic, micelle, antimicrobial protein
  
• 2rlh.pdb. antimicrobial protein 07-jul-07 2rlh (NMR, 10 structures)
  Title: nmr structure of the antimicrobial peptide rp-1 bound to dpc micelles
  Author: s. bourbigot, e. dodd, c. horwood, v. booth
  Keywords: alpha-helix, amphipathic, micelle, antimicrobial protein
  
• 2roc.pdb. apoptosis 17-mar-08 2roc He Hg (NMR, 20 structures)
  Title: solution structure of mcl-1 complexed with puma
  Author: c. l. day, c. smits, f. c. fan, e. f. lee, w. d. fairlie, m. g. hinds
  Keywords: bcl-2, apoptosis, puma, bh3-only, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein, transmembrane, ubl conjugation
  
• 2rod.pdb. apoptosis 17-mar-08 2rod He Hg (NMR, 20 structures)
  Title: solution structure of mcl-1 complexed with noxaa
  Author: c. l. day, c. smits, f. c. fan, e. f. lee, w. d. fairlie, m. g. hinds
  Keywords: noxaa, apoptosis, bh3-only, bcl-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein, transmembrane, ubl conjugation
  
• 2v13.pdb. hydrolase 21-may-07 2v13
  Title: crystal structure of renin with inhibitor 7
  Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
  Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
  
• 2v16.pdb. hydrolase 22-may-07 2v16
  Title: crystal structure of renin with inhibitor 3
  Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
  Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
  
• 2vei.pdb. isomerase 24-oct-07 2vei
  Title: structure-based enzyme engineering efforts with an inactive monomeric tim variant: the importance of a single point mutation for generating an active site with suitable binding properties
  Author: m. alahuhta, m. salin, m. g. casteleijn, c. kemmer, i. el-sayed, k. augustyns, p. neubauer, r. k. wierenga
  Keywords: tim barrel, glycolysis, engineering, pentose shunt, binding pocket, gluconeogenesis, lipid synthesis, substrate specificity, fatty acid biosynthesis, tim, enzyme, monomeric, isomerase, glycosome
  
• 2vek.pdb. isomerase 24-oct-07 2vek
  Title: structure-based enzyme engineering efforts with an inactive monomeric tim variant: the importance of a single point mutation for generating an active site with suitable binding properties
  Author: m. alahuhta, m. salin, m. g. casteleijn, c. kemmer, i. el-sayed, k. augustyns, p. neubauer, r. k. wierenga
  Keywords: tim barrel, glycolysis, engineering, pentose shunt, binding pocket, gluconeogenesis, lipid synthesis, substrate specificity, fatty acid biosynthesis, tim, enzyme, monomeric, isomerase, glycosome
  
• 2vel.pdb. isomerase 24-oct-07 2vel Cl
  Title: structure-based enzyme engineering efforts with an inactive monomeric tim variant: the importance of a single point mutation for generating an active site with suitable binding properties
  Author: m. alahuhta, m. salin, m. g. casteleijn, c. kemmer, i. el-sayed, k. augustyns, p. neubauer, r. k. wierenga
  Keywords: tim barrel, glycolysis, engineering, pentose shunt, binding pocket, gluconeogenesis, lipid synthesis, substrate specificity, fatty acid biosynthesis, tim, enzyme, monomeric, isomerase, glycosome
  
• 2vem.pdb. isomerase 25-oct-07 2vem
  Title: structure-based enzyme engineering efforts with an inactive monomeric tim variant: the importance of a single point mutation for generating an active site with suitable binding properties
  Author: m. alahuhta, m. salin, m. g. casteleijn, c. kemmer, i. el-sayed, k. augustyns, p. neubauer, r. k. wierenga
  Keywords: tim barrel, glycolysis, engineering, pentose shunt, binding pocket, gluconeogenesis, lipid synthesis, substrate specificity, fatty acid biosynthesis, tim, enzyme, monomeric, isomerase, glycosome
  
• 2ven.pdb. isomerase 25-oct-07 2ven
  Title: structure-based enzyme engineering efforts with an inactive monomeric tim variant: the importance of a single point mutation for generating an active site with suitable binding properties
  Author: m. alahuhta, m. salin, m. g. casteleijn, c. kemmer, i. el-sayed, k. augustyns, p. neubauer, r. k. wierenga
  Keywords: tim barrel, glycolysis, engineering, pentose shunt, binding pocket, gluconeogenesis, lipid synthesis, substrate specificity, fatty acid biosynthesis, tim, enzyme, monomeric, isomerase, glycosome
  
• 2vha.pdb. transport protein 20-nov-07 2vha
  Title: debp
  Author: y. l. hu, c. -p. fan, g. fu, d. y. zhu, q. jin, d. -c. wang
  Keywords: periplasmic binding protein, crystal structure, ligand binding, ultrahigh resolution, structural basis of structural basis of specificity, shigella flexneri, transport protein
  
• 2vkv.pdb. transcription 02-jan-08 2vkv Mg
  Title: tetr (bd) variant l17g with reverse phenotype
  Author: m. resch, h. striegl, e. m. henssler, m. sevvana, c. egerer-sieber, e. schiltz, w. hillen, y. a. muller
  Keywords: plasmid, repressor, magnesium, dna-binding
  
• 2vqe.pdb. ribosome 13-mar-08 2vqe Mg K Zn
  Title: modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding
  Author: s. kurata, a. weixlbaumer, t. ohtsuki, t. shimazaki, t. wada, y. kirino, k. takai, k. watanabe, v. ramakrishnan, t. suzuki
  Keywords: rrna-binding, metal-binding, zinc-finger, translation, coiled coil, paromomycin, trna, zinc, mrna, cmo5u, ribosome, rna-binding, modifiactions, ribosomal protein, ribonucleoprotein
  
• 2vqf.pdb. ribosome 14-mar-08 2vqf Mg K Zn
  Title: modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding
  Author: s. kurata, a. weixlbaumer, t. ohtsuki, t. shimazaki, t. wada, y. kirino, k. takai, k. watanabe, v. ramakrishnan, t. suzuki
  Keywords: rrna-binding, metal-binding, zinc-finger, translation, coiled coil, paromomycin, trna, zinc, mrna, cmo5u, ribosome, rna-binding, modifiactions, ribosomal protein, ribonucleoprotein
  
• 2vqj.pdb. hydrolase 17-mar-08 2vqj F K Zn
  Title: structure of hdac4 catalytic domain bound to a trifluoromethylketone inhbitor
  Author: m. j. bottomley, p. lo surdo, p. di giovine, a. cirillo, r. scarpelli, f. ferrigno, p. jones, p. neddermann, r. de francesco, c. steinkuhler, p. gallinari, a. carfi
  Keywords: hydrolase, cytoplasm
  
• 2vqm.pdb. hydrolase 17-mar-08 2vqm K Zn
  Title: structure of hdac4 catalytic domain bound to a hydroxamic acid inhbitor
  Author: m. j. bottomley, p. lo surdo, p. di giovine, a. cirillo, r. scarpelli, f. ferrigno, p. jones, p. neddermann, r. de francesco, c. steinkuhler, p. gallinari, a. carfi
  Keywords: hydrolase, cytoplasm
  
• 2vqo.pdb. hydrolase 18-mar-08 2vqo F K Zn
  Title: structure of hdac4 catalytic domain with a gain-of-function muation bound to a trifluoromethylketone inhbitor
  Author: m. j. bottomley, p. lo surdo, p. di giovine, a. cirillo, r. scarpelli, f. ferrigno, p. jones, p. neddermann, r. de francesco, c. steinkuhler, p. gallinari, a. carfi
  Keywords: hydrolase, cytoplasm
  
• 2vqq.pdb. hydrolase 18-mar-08 2vqq F K Zn
  Title: structure of hdac4 catalytic domain (a double cysteine-to- alanine mutant) bound to a trifluoromethylketone inhbitor
  Author: m. j. bottomley, p. lo surdo, p. di giovine, a. cirillo, r. scarpelli, f. ferrigno, p. jones, p. neddermann, r. de francesco, c. steinkuhler, p. gallinari, a. carfi
  Keywords: hydrolase, cytoplasm
  
• 2vrp.pdb. sugar-binding protein 09-apr-08 2vrp Cl Na
  Title: structure of rhodocytin
  Author: a. a. watson, c. a. o'callaghan
  Keywords: sugar-binding protein, lectin, clec-2, venom
  
• 2vrw.pdb. signaling protein 16-apr-08 2vrw Zn
  Title: critical structural role for the ph and c1 domains of the vav1 exchange factor
  Author: j. rapley, v. tybulewicz, k. rittinger
  Keywords: guanine-nucleotide releasing factor, alternative splicing, phorbol-ester binding, adp-ribosylation, nucleotide-binding, signaling protein
  
• 2vsa.pdb. toxin 22-apr-08 2vsa
  Title: structure and mode of action of a mosquitocidal holotoxin
  Author: n. treiber, d. j. reinert, i. carpusca, k. aktories, g. e. schulz
  Keywords: adp-ribosyltransferase, lectin, ricin-b-like domain
  
• 2vse.pdb. toxin 22-apr-08 2vse
  Title: structure and mode of action of a mosquitocidal holotoxin
  Author: n. treiber, d. j. reinert, i. carpusca, k. aktories, g. e. schulz
  Keywords: adp-ribosyltransferase, toxin, lectin, ricin-b-like domain
  
• 2vsf.pdb. hydrolase 23-apr-08 2vsf Fe Ca
  Title: structure of xpd from thermoplasma acidophilum
  Author: j. kuper, s. c. wolski, j. j. truglio, c. kisker
  Keywords: tfiih, helicase, hydrolase, atp-binding, nucleotide-binding, iron sulfur cluster
  
• 2vsq.pdb. ligase 29-apr-08 2vsq
  Title: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide synthetase termination module
  Author: a. tanovic, s. a. samel, l. -o. essen, m. a. marahiel
  Keywords: enzymatic assembly line, surfactin a, condensation, thioesterase
  
• 2vvg.pdb. motor protein 08-jun-08 2vvg Mg
  Title: crystal structure of the g.intestinalis kinesin 2 gikin2a motor domain
  Author: j. c. hoeng, j. loewe, s. c. dawson, w. z. cande, m. s. sagolla, j. j. mancuso
  Keywords: nucleotide-binding, kinesin motor domain, microtubule, atp-binding
  
• 2vvr.pdb. isomerase 11-jun-08 2vvr
  Title: crystal structure of the h99n mutant of ribose-5-phosphate isomerase b from e. coli soaked with ribose 5-phosphate
  Author: a. k. roos, s. l. mowbray
  Keywords: isomerase, carbohydrate metabolism, pentose phosphate pathway
  
• 2vwa.pdb. unknown function 20-jun-08 2vwa Se
  Title: crystal structure of a sporozoite protein essential for liver stage development of malaria parasite
  Author: a. sharma, a. sharma, m. yogavel, author 2 j. gill, r. r. akhouri
  
  
• 2vwi.pdb. transferase 25-jun-08 2vwi Au Mg
  Title: structure of the osr1 kinase, a hypertension drug target
  Author: f. villa, m. deak, d. r. alessi, d. m. f. vanaalten
  Keywords: ste kinase, hypertension, transferase
  
• 2vwu.pdb. transferase 27-jun-08 2vwu Cl
  Title: ephb4 kinase domain inhibitor complex
  Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, s. rowsell, m. packer, m. mcalister
  Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
  
• 2vwv.pdb. transferase 27-jun-08 2vwv Cl
  Title: ephb4 kinase domain inhibitor complex
  Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, j. g. kettle, a. g. leach
  Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
  
• 2vww.pdb. transferase 27-jun-08 2vww Cl
  Title: ephb4 kinase domain inhibitor complex
  Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
  Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
  
• 2z2v.pdb. oxidoreductase 28-may-07 2z2v
  Title: crystal structure of l-lysine dehydrogenase from hyperthermophilic archaeon pyrococcus horikoshii
  Author: k. yoneda, h. sakuraba, j. fukuda, t. ohshima
  Keywords: pyrococcus horikoshii, oxidoreductase
  
• 2z78.pdb. transferase 16-aug-07 2z78 F
  Title: s. cerevisiae geranylgeranyl pyrophosphate synthase in complex with bph-806
  Author: c. k. -m. chen, r. t. guo, m. hudock, r. cao, e. oldfield, a. h. -j. wang
  Keywords: geranylgeranyl pyrophosphate, bisphosphonate, carotenoid biosynthesis, cytoplasm, isoprene biosynthesis, multifunctional enzyme, protein transport, transport
  
• 2z7i.pdb. transferase 23-aug-07 2z7i Mg
  Title: s. cerevisiae geranylgeranyl pyrophosphate synthase in complex with inhibitor bph-742
  Author: r. t. guo, c. k. -m. chen, t. -p. ko, r. cao, m. hudock, e. oldfield, a. h. - j. wang
  Keywords: geranylgeranyl pyrophosphate, bisphosphonate, carotenoid biosynthesis, cytoplasm, isoprene biosynthesis, multifunctional enzyme, protein transport, transport, trasferase
  
• 2zf8.pdb. structural protein 25-dec-07 2zf8
  Title: crystal structure of moty
  Author: k. imada, s. kojima, k. namba, m. homma
  Keywords: 2-layer sandwich, flagellum, structural protein
  
• 2zi7.pdb. transferase 13-feb-08 2zi7
  Title: c4s dck variant of dck in complex with d-dg+udp
  Author: e. sabini, a. lavie
  Keywords: purine, deoxyguanosine, deoxycytidine kinase, nucleoside, enantiomer, d-dg, dg, atp-binding, nucleotide- binding, nucleus, phosphoprotein, transferase
  
• 2zi9.pdb. transferase 13-feb-08 2zi9 Cl
  Title: c4s-e247a dck variant of dck in complex with cladribine+adp
  Author: e. sabini, a. lavie
  Keywords: purine, cladribine, deoxycytidine kinase, nucleoside, deoxyadenosine analog, atp-binding, nucleotide-binding, nucleus, phosphoprotein, transferase
  
• 2zia.pdb. transferase 13-feb-08 2zia Cl
  Title: c4s dck variant of dck in complex with cladribine+udp
  Author: e. sabini, a. lavie
  Keywords: purine, deoxycytidine kinase, nucleoside, cladribine, 2-chloro-2'-deoxyadenosine, deoxyadenosine analog, udp, atp- binding, nucleotide-binding, nucleus, phosphoprotein, transferase
  
• 2ziy.pdb. signaling protein 27-feb-08 2ziy
  Title: crystal structure of squid rhodopsin
  Author: m. miyano, t. shimamura
  Keywords: signaling protein
  
• 2zoy.pdb. gene regulation 20-jun-08 2zoy
  Title: the multi-drug binding transcriptional repressor cgmr (cgl2612 protein) from c.glutamicum
  Author: h. itou, m. yao, n. watanabe, i. tanaka
  Keywords: dna-binding, transcription, transcription regulation, gene regulation
  
• 2zoz.pdb. transcription 20-jun-08 2zoz
  Title: crystal structure of the ethidium-bound form of the multi- drug binding transcriptional repressor cgmr
  Author: h. itou, y. shirakihara, i. tanaka
  Keywords: dna-binding, transcription, transcription regulation
  
• 3b5h.pdb. cell invasion 26-oct-07 3b5h
  Title: crystal structure of the extracellular portion of hab18g/cd147
  Author: x. -l. yu, z. -n. chen
  Keywords: cell invasion
  
• 3b6l.pdb. hydrolase 29-oct-07 3b6l
  Title: crystal structure of lysozyme folded in sds and 2-methyl-2, 4-pentanediol
  Author: c. michaux, j. pouyez, j. wouters, g. g. prive
  Keywords: crystal structure, protein-sds complex, mpd, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
  
• 3b8t.pdb. isomerase 02-nov-07 3b8t
  Title: crystal structure of escherichia coli alaine racemase mutant p219a
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 3b8u.pdb. isomerase 02-nov-07 3b8u
  Title: crystal structure of escherichia coli alaine racemase mutant e221a
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 3b8v.pdb. isomerase 02-nov-07 3b8v
  Title: crystal structure of escherichia coli alaine racemase mutant e221k
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 3b8w.pdb. isomerase 02-nov-07 3b8w
  Title: crystal structure of escherichia coli alaine racemase mutant e221p
  Author: d. wu, t. hu, l. zhang, h. jiang, x. shen
  Keywords: cell shape, cell wall biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate
  
• 3bm8.pdb. hydrolase 12-dec-07 3bm8
  Title: crystal structure of yoph mutant d356a complexed with irreversible inhibitor pvsn
  Author: z. y. zhang, s. j. liu
  Keywords: pvsn, binding selectivity, binding affinity, hydrolase, membrane, outer membrane, plasmid, protein phosphatase, secreted, virulence
  
• 3bm9.pdb. chaperone 12-dec-07 3bm9 Br
  Title: discovery of benzisoxazoles as potent inhibitors of chaperone hsp90
  Author: a. gopalsamy, m. shi, e. m. vogan, j. golas, j. jacob, j. johnson, f. lee, r. nilakantan, r. peterson, k. svenson, m. s. tam, y. wen, r. chopra, j. ellingboe, k. arndt, f. boschelli
  Keywords: atp binding domain, alternative splicing, atp- binding, cytoplasm, nucleotide-binding, phosphoprotein, stress response
  
• 3bmy.pdb. chaperone 13-dec-07 3bmy Cl
  Title: discovery of benzisoxazoles as potent inhibitors of chaperone hsp90
  Author: a. gopalsamy, m. shi, e. m. vogan, j. golas, j. jacob, j. johnson, f. lee, r. nilakantan, r. peterson, k. svenson, m. s. tam, y. wen, r. chopra, j. ellingboe, k. arndt, f. boschelli
  Keywords: atp binding domain, alternative splicing, atp- binding, cytoplasm, nucleotide-binding, phosphoprotein, stress response
  
• 3bx1.pdb. hydrolase/hydrolase inhibitor 11-jan-08 3bx1 Cl Na Ca
  Title: complex between the barley alpha-amylase/subtilisin inhibitor and the subtilisin savinase
  Author: p. o. micheelsen, j. vevodova, k. wilson, m. skjot
  Keywords: serine protease inhibitor, hydrolase/hydrolase inhibitor complex
  
• 3c0w.pdb. hydrolase/dna 21-jan-08 3c0w Na Ca
  Title: i-scei in complex with a bottom nicked dna substrate
  Author: c. m. moure, f. s. gimble, f. a. quiocho
  Keywords: homing, ladlidadg, catalytic mechanism, metal binding, nicked intermediate, hydrolase, intron homing, mitochondrion, mrna processing, mrna splicing, hydrolase/dna complex
  
• 3c0x.pdb. hydrolase/dna 21-jan-08 3c0x Ca
  Title: i-scei in complex with a top nicked dna substrate
  Author: c. m. moure, f. s. gimble, f. a. quiocho
  Keywords: homing, ladlidadg, catalytic mechanism, metal binding, nicked intermediate, hydrolase, intron homing, mitochondrion, mrna processing, mrna splicing, hydrolase/dna complex
  
• 3c2a.pdb. immune system 24-jan-08 3c2a
  Title: antibody fab fragment 447-52d in complex with ug1033 peptide
  Author: a. k. dhillon, r. l. stanfield, i. a. wilson
  Keywords: envelope protein, immune system
  
• 3c62.pdb. electron transport 02-feb-08 3c62 Zn Fe Ca
  Title: tetrameric cytochrome cb562 (h59/d62/h63/h73/a74/h77) assembly stabilized by interprotein zinc coordination
  Author: f. a. tezcan, e. n. salgado, r. a. lewis, j. faraone-mennella
  Keywords: interfacial zn-coordination, electron transport, heme, iron, metal-binding, periplasm, transport
  
• 3c63.pdb. electron transport 02-feb-08 3c63 Zn Fe Ca
  Title: tetrameric cytochrome cb562 (k34/h59/d62/h63/h73/a74/h77) assembly stabilized by interprotein zinc coordination
  Author: f. a. tezcan, e. n. salgado, r. a. lewis, j. faraone-mennella
  Keywords: interfacial zn-coordination, electron transport, heme, iron, metal-binding, periplasm, transport
  
• 3c66.pdb. transferase 02-feb-08 3c66
  Title: yeast poly(a) polymerase in complex with fip1 residues 80- 105
  Author: a. bohm, g. meinke
  Keywords: mrna processing, nucleus, rna- binding, transferase, phosphoprotein
  
• 3c94.pdb. hydrolase 15-feb-08 3c94 Mg
  Title: exoi/ssb-ct complex
  Author: d. lu, j. l. keck
  Keywords: ssb, genome maintenance, dna damage, dna repair, hydrolase, dna replication, dna-binding, phosphoprotein
  
• 3c95.pdb. hydrolase 15-feb-08 3c95 Mg
  Title: exonuclease i (apo)
  Author: j. l. keck, d. lu
  Keywords: ssb, genome maintenance, dna damage, dna repair, hydrolase
  
• 3c9w.pdb. transferase 18-feb-08 3c9w
  Title: crystal structure of erk-2 with hypothemycin covalently bound
  Author: r. j. rosenfeld
  Keywords: acetylation, atp-binding, cell cycle, kinase, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
  
• 3cfj.pdb. immune system 04-mar-08 3cfj
  Title: crystal structure of catalytic elimination antibody 34e4, orthorhombic crystal form
  Author: e. w. debler, i. a. wilson
  Keywords: catalytic antibody, chimeric fab, apo form, proton transfer, conformational change, immune system, immunoglobulin domain, immunoglobulin v region
  
• 3cfk.pdb. immune system 04-mar-08 3cfk Cd
  Title: crystal structure of catalytic elimination antibody 34e4, triclinic crystal form
  Author: e. w. debler, i. a. wilson
  Keywords: catalytic antibody, chimeric fab, apo form, proton transfer, conformational change, immune system, chimera, immunoglobulin domain, immunoglobulin v region
  
• 3cjo.pdb. motor protein 13-mar-08 3cjo Mg F
  Title: crystal structure of ksp in complex with inhibitor 30
  Author: y. yan
  Keywords: ksp-inhibitor complex, atp-binding, cell cycle, cell division, coiled coil, microtubule, mitosis, motor protein, nucleotide-binding, phosphoprotein
  
• 3ckz.pdb. viral protein, hydrolase 18-mar-08 3ckz Ca
  Title: n1 neuraminidase h274y + zanamivir
  Author: p. colllins, l. f. haire, y. p. lin, j. liu, r. j. russell, p. a. walker, j. j. skehel, s. r. martin, a. j. hay, s. j. gamblin
  Keywords: neuraminidase, h274y, zanamivir, glycosidase, hydrolase, membrane, transmembrane, virion, viral protein
  
• 3cl0.pdb. viral protein, hydrolase 18-mar-08 3cl0 Ca
  Title: n1 neuraminidase h274y + oseltamivir
  Author: p. collins, l. f. haire, y. p. lin, j. liu, r. j. russell, p. a. walker, j. j. skehel, s. r. martin, a. j. hay, s. j. gamblin
  Keywords: neuraminidase, h274y, oseltamivir, glycosidase, hydrolase, membrane, transmembrane, virion, viral protein
  
• 3cl2.pdb. viral protein, hydrolase 18-mar-08 3cl2
  Title: n1 neuraminidase n294s + oseltamivir
  Author: p. collins, l. f. haire, y. p. lin, j. liu, r. j. russell, p. a. walker, j. j. skehel, s. r. martin, a. j. hay, s. j. gamblin
  Keywords: neuraminidase, n294s, oseltamivir, glycosidase, hydrolase, membrane, transmembrane, virion, viral protein
  
• 3coc.pdb. proton transport 27-mar-08 3coc
  Title: crystal structure of d115a mutant of bacteriorhodopsin
  Author: n. h. joh, s. faham, j. u. bowie
  Keywords: transmembrane, transport, proton transport
  
• 3cod.pdb. proton transport 27-mar-08 3cod
  Title: crystal structure of t90a/d115a mutant of bacteriorhodopsin
  Author: n. h. joh, a. min, s. faham, j. u. bowie
  Keywords: transmembrane, transport, proton transport
  
• 3cs7.pdb. hydrolase 09-apr-08 3cs7 F Ca
  Title: factor xa in complex with the inhibitor 1-(4-methoxyphenyl)- 6-(4-(1-(pyrrolidin-1-ylmethyl)cyclopropyl)phenyl)-3- (trifluoromethyl)-5,6-dihydro-1h-pyrazolo[3,4-c]pyridin- 7(4h)-one
  Author: r. s. alexander
  Keywords: hydroxylation, polymorphism, zymogen, blood coagulation, calcium, protease
  
• 3csy.pdb. immune system/viral protein 10-apr-08 3csy Se
  Title: crystal structure of the trimeric prefusion ebola virus glycoprotein in complex with a neutralizing antibody from a human survivor
  Author: j. e. lee, m. l. fusco, a. j. hessell, w. b. oswald, d. r. burton, e. o. saphire
  Keywords: immune system/viral protein complex
  
• 3cu5.pdb. transcription regulator 15-apr-08 3cu5
  Title: crystal structure of a two component transcriptional regulator arac from clostridium phytofermentans isdg
  Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
  Keywords: crystal structure, protein structure initiative, new york structural genomix research consortium, nysgxrc, transcriptional regulator, arac, transcription regulator, psi-2
  
• 3cue.pdb. protein transport 16-apr-08 3cue
  Title: crystal structure of a trapp subassembly activating the rab ypt1p
  Author: y. cai, k. m. reinisch
  Keywords: gtp-binding, nucleotide- binding, phosphoprotein, prenylation, protein transport
  
• 3cvb.pdb. electron transport 18-apr-08 3cvb Cu
  Title: regulation of protein function: crystal packing interfaces and conformational dimerization
  Author: p. b. crowley, p. m. matias, h. mi, s. j. firbank, m. j. banfield, c. dennison
  Keywords: self assembly, copper, electron transport, metal-binding, transport
  
• 3cvc.pdb. electron transport 18-apr-08 3cvc Mg Cu
  Title: regulation of protein function: crystal packing interfaces and conformational dimerization
  Author: p. b. crowley, p. m. matias, h. mi, s. j. firbank, m. j. banfield, c. dennison
  Keywords: self assembly, copper, electron transport, metal-binding, transport
  
• 3cvd.pdb. electron transport 18-apr-08 3cvd Cu Zn
  Title: regulation of protein function: crystal packing interfaces and conformational dimerization
  Author: p. b. crowley, p. m. matias, h. mi, s. j. firbank, m. j. banfield, c. dennison
  Keywords: self assemby, copper, electron transport, metal- binding, transport
  
• 3cwc.pdb. transferase 21-apr-08 3cwc Cl Se
  Title: crystal structure of putative glycerate kinase 2 from salmonella typhimurium lt2
  Author: j. osipiuk, m. zhou, d. holzle, w. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
  Keywords: center for structural genomics of infectious diseases, csgid, idp122, kinase, transferase
  
• 3cwd.pdb. transcription 21-apr-08 3cwd
  Title: molecular recognition of nitro-fatty acids by ppar gamma
  Author: d. martynowski, y. li
  Keywords: transcription regulation, zinc, zinc-finger
  
• 3cwo.pdb. de novo protein 22-apr-08 3cwo
  Title: a beta/alpha-barrel built by the combination of fragments from different folds
  Author: t. a. m. bharat, s. eisenbeis, k. zeth, b. hoecker
  Keywords: chey, hisf, half barrel, de novo protein
  
• 3cxu.pdb. hydrolase 25-apr-08 3cxu
  Title: structure of a y149f mutant of epoxide hydrolase from solanum tuberosum
  Author: a. naworyta, s. l. mowbray, m. widersten, a. thomaeus
  Keywords: alpha/beta hydrolase fold, y149f, proton wire
  
• 3cy6.pdb. unknown function 25-apr-08 3cy6
  Title: crystal structure of e18q dj-1
  Author: a. c. witt, m. lakshminarasimhan, b. c. remington, s. hasim, e. pozharski, m. a. wilson
  Keywords: chaperone, cytoplasm, nucleus, oncogene, oxidation, parkinson disease, unknown function
  
• 3cyf.pdb. unknown function 25-apr-08 3cyf
  Title: crystal structure of e18n dj-1
  Author: a. c. witt, m. lakshminarasimhan, b. c. remington, s. hasim, e. pozharski, m. a. wilson
  Keywords: chaperone, cytoplasm, nucleus, oncogene, oxidation, parkinson disease, unknown function
  
• 3cyp.pdb. membrane protein 26-apr-08 3cyp
  Title: the crystal structure of the c-terminal domain of helicobacter pylori motb (residues 125-256).
  Author: a. roujeinikova
  Keywords: bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, chemotaxis, flagellar rotation, inner membrane, membrane, transmembrane, membrane protein
  
• 3cyq.pdb. membrane protein 26-apr-08 3cyq
  Title: the crystal structure of the complex of the c-terminal domain of helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid
  Author: a. roujeinikova
  Keywords: bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, chemotaxis, flagellar rotation, inner membrane, membrane, transmembrane, membrane protein
  
• 3cz9.pdb. unknown function 28-apr-08 3cz9
  Title: crystal structure of e18l dj-1
  Author: a. c. witt, m. lakshminarasimhan, b. c. remington, s. hasim, e. pozharski, m. a. wilson
  Keywords: chaperone, cytoplasm, nucleus, oncogene, oxidation, parkinson disease, unknown function
  
• 3cza.pdb. unknown function 28-apr-08 3cza
  Title: crystal structure of e18d dj-1
  Author: a. c. witt, m. lakshminarasimhan, b. c. remington, s. hashim, e. pozharski, m. a. wilson
  Keywords: chaperone, cytoplasm, nucleus, oncogene, oxidation, parkinson disease, unknown function
  
• 3d0g.pdb. hydrolase 01-may-08 3d0g Cl Zn
  Title: crystal structure of spike protein receptor-binding domain from the 2002-2003 sars coronavirus human strain complexed with human-civet chimeric receptor ace2
  Author: f. li
  Keywords: virulence, alternative splicing, polymorphism
  
• 3d0h.pdb. hydrolase 01-may-08 3d0h Cl Zn
  Title: crystal structure of spike protein receptor-binding domain from the 2002-2003 sars coronavirus civet strain complexed with human-civet chimeric receptor ace2
  Author: f. li
  Keywords: virulence, alternative splicing, polymorphism
  
• 3d0i.pdb. hydrolase 01-may-08 3d0i Cl Zn
  Title: crystal structure of spike protein receptor-binding domain from the 2005-2006 sars coronavirus civet strain complexed with human-civet chimeric receptor ace2
  Author: f. li
  Keywords: virulence, alternative splicing, polymorphism
  
• 3d19.pdb. structural genomics, unknown function 05-may-08 3d19 Mg Fe
  Title: crystal structure of a conserved metalloprotein from bacillus cereus
  Author: j. b. bonanno, y. patskovsky, j. freeman, k. t. bain, s. chang, s. ozyurt, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: unknown function, psi-2, protein structure initiative, nysgxrc, new york sgx research center for structural genomics
  
• 3d1h.pdb. hydrolase 05-may-08 3d1h
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 500 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, hydrolase
  
• 3d1l.pdb. oxidoreductase 06-may-08 3d1l Cl Se
  Title: crystal structure of putative nadp oxidoreductase bf3122 from bacteroides fragilis
  Author: c. chang, r. hendricks, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: bf3122, bacteroides fragilis, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
  
• 3d1o.pdb. hydrolase 06-may-08 3d1o Cl
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 300 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, ionic strength, hydrolase
  
• 3d1p.pdb. transferase 06-may-08 3d1p Cl Se
  Title: atomic resolution structure of uncharacterized protein from saccharomyces cerevisiae
  Author: b. nocek, e. evdokimova, m. kudritska, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: atomic resolution structure, psi, mcsg, mitochondrial rhodanese-like protein, structural genomics, protein structure initiative, midwest center for structural genomics, mitochondrion, transferase
  
• 3d1q.pdb. hydrolase 06-may-08 3d1q Cl
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 400 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, ionic strength, hydrolase
  
• 3d2u.pdb. immune system 08-may-08 3d2u
  Title: structure of ul18, a peptide-binding viral mhc mimic, bound to a host inhibitory receptor
  Author: z. yang, p. j. bjorkman
  Keywords: transmembrane, immune system
  
• 3d35.pdb. transferase 09-may-08 3d35 Hg
  Title: crystal structure of rtt109-ac-coa complex
  Author: y. tang, r. marmorstein
  Keywords: histone acetyltransferase (hat), p300/cbp, histone h3 k56, genome stability, dna damage, dna repair, nucleus, transcription, transcription regulation
  
• 3d37.pdb. structural genomics, unknown function 09-may-08 3d37 Cl
  Title: the crystal structure of the tail protein from neisseria meningitidis mc58
  Author: r. zhang, h. li, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, unknown function
  
• 3d38.pdb. photosynthesis 09-may-08 3d38 Mg Fe
  Title: crystal structure of new trigonal form of photosynthetic reaction center from blastochloris viridis. crystals grown in microfluidics by detergent capture
  Author: l. li, s. h. m. nachtergaele, a. m. seddon, v. tereshko, n. ponomarenko, r. f. ismagilov, accelerated technologies center for gene to 3d structure (atcg3d)
  Keywords: lipoprotein, membrane, metal-binding, photosynthesis, transport, bacteriochlorophyll, chlorophyll, chromophore, formylation, transmembrane, magnesium
  
• 3d3o.pdb. transcription regulator 12-may-08 3d3o Se
  Title: crystal structure of the effector domain of the putative transcriptional regulator iclr from acinetobacter sp. adp1
  Author: y. kim, g. shackelford, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: effector domain, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, transcription regulator
  
• 3d3t.pdb. hydrolase 12-may-08 3d3t
  Title: crystal structure of hiv-1 crf01_ae in complex with the substrate p1-p6
  Author: r. m. bandaranayake, m. prabu-jeyabalan, j. kakizawa, w. sugiura, c. a. schiffer
  Keywords: non-b clades, crf01_ae, p1-p6 substrate, aids, aspartyl protease, hydrolase
  
• 3d3x.pdb. hydrolase 13-may-08 3d3x Zn
  Title: crystal structure of botulinum neurotoxin serotype e catalytic domain in complex with snap-25 substrate peptide
  Author: r. agarwal, s. swaminathan
  Keywords: bont e, snap-25, enzyme-substrate complex, hydrolase
  
• 3d4e.pdb. hydrolase 14-may-08 3d4e Se
  Title: crystal structure of putative beta-lactamase inhibitor protein (np_721579.1) from streptococcus mutans at 1.40 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative beta-lactamase inhibitor protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function, hydrolase
  
• 3d4o.pdb. oxidoreductase 14-may-08 3d4o Se
  Title: crystal structure of dipicolinate synthase subunit a (np_243269.1) from bacillus halodurans at 2.10 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: oxidoreductase
  
• 3d4r.pdb. structural genomics, unknown function 14-may-08 3d4r Se
  Title: crystal structure of domain of unknown function from the pfam-b_34464 family (np_987166.1) from methanococcus maripaludis jj (dsm 2067) at 2.20 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: domain of unknown function from the pfam- b_34464 family, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3d63.pdb. hydrolase 18-may-08 3d63
  Title: crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: ssgcid, pyrophosphatase, hydrolase, seattle structural genomics center for infectious disease
  
• 3d7k.pdb. lyase 21-may-08 3d7k Ca
  Title: crystal structure of benzaldehyde lyase in complex with the inhibitor mbp
  Author: g. s. brandt
  Keywords: flavoprotein, lyase, thiamine pyrophosphate
  
• 3daj.pdb. transferase 29-may-08 3daj
  Title: crystal structure of aurora a complexed with an inhibitor discovered through site-directed dynamic tethering
  Author: m. m. he
  Keywords: kinase, transferase
  
• 3dcg.pdb. ligase/viral protein 03-jun-08 3dcg
  Title: crystal structure of the hiv vif bc-box in complex with human elonginb and elonginc
  Author: b. j. stanley, e. s. ehrlich, l. short, y. yu, z. xiao, x. -f. yu, y. xiong
  Keywords: ligase/viral protein complex
  
• 3dii.pdb. oxidoreductase 20-jun-08 3dii
  Title: crystal structure of a carbohydrate specific scor enzyme from clostridium thermocellum, ligand-free form
  Author: r. huether, z-j. liu, h. xu, b-c. wang, v. pletnev, q. mao, t. umland, w. duax
  Keywords: scor, rossmann fold, oxidoreductase
  
• 3dij.pdb. oxidoreductase 20-jun-08 3dij
  Title: crystal structure of a carbohydrate specific scor enzyme from clostridium thermocellum, nad-bound form
  Author: r. huether, z-j. liu, h. xu, b-c. wang, v. pletnev, q. mao, t. umland, w. duax
  Keywords: scor, rossmann fold, oxidoreductase
  
• 3dj8.pdb. hydrolase 22-jun-08 3dj8 Mn
  Title: synthesis of (s)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase i
  Author: l. di costanzo, d. w. christianson
  Keywords: manganese cluster, alternative splicing, arginine metabolism, cytoplasm, disease mutation, hydrolase, manganese, metal-binding, phosphoprotein, polymorphism, urea cycle
  
• 3dkb.pdb. hydrolase 24-jun-08 3dkb
  Title: crystal structure of a20, 2.5 angstrom
  Author: s. -c. lin, j. y. chung, y. -c. lo, h. wu
  Keywords: dub domain, apoptosis, cytoplasm, dna-binding, hydrolase, metal-binding, nucleus, phosphoprotein, polymorphism, protease, thiol protease, ubl conjugation pathway, zinc, zinc-finger