Recent PDB releases or updates: week of 27 June 2008

• 1gqa.pdb. electron transport 22-nov-01 1gqa Fe
  Title: cytochrome c' from rhodobacter spheriodes
  Author: k. a. kantardjieff, b. rupp
  Keywords: heme
  
• 1k9t.pdb. hydrolase 30-oct-01 1k9t
  Title: chitinase a complexed with tetra-n-acetylchitotriose
  Author: g. prag, p. a. tucker, a. b. oppenheim
  Keywords: chitinase, chitinolysis, a/b- (tim)-barrel
  
• 1tu9.pdb. structural genomics, unknown function 24-jun-04 1tu9 Fe
  Title: crystal structure of a protein pa3967, a structurally highly homologous to a human hemoglobin, from pseudomonas aeruginosa pao1
  Author: y. kim, a. joachimiak, t. skarina, o. egorova, a. bochkarev, a. savchenko, a. edwards, midwest center for structural genomics (mcsg)
  Keywords: heme, hemoglobin, pseudomonas aeruginosa pao1, psi, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 1uwr.pdb. hydrolase 11-feb-04 1uwr F
  Title: structure of beta-glycosidase from sulfolobus solfataricus in complex with 2-deoxy-2-fluoro-galactose
  Author: t. m. gloster, s. roberts, v. m-a. ducros, g. perugino, m. rossi, r. hoos, m. moracci, a. vasella, g. j. davies
  Keywords: glycoside hydrolase, family 1, 2-deoxy-2-fluoro-galactose hydrolase, archaeon
  
• 1wui.pdb. oxidoreductase 07-dec-04 1wui Mg Fe Ni
  Title: ultra-high resolution structure of the ni-a state of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f
  Author: h. ogata, s. hirota, a. nakahara, h. komori, n. shibata, t. kato, k. kano, y. higuchi
  Keywords: [nife]hydrogenase, oxidoreductase, ni-a state, unready state
  
• 1wuj.pdb. oxidoreductase 07-dec-04 1wuj Mg Fe Ni
  Title: three-dimensional structure of the ni-b state of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f
  Author: h. ogata, s. hirota, a. nakahara, h. komori, n. shibata, t. kato, k. kano, y. higuchi
  Keywords: [nife]hydrogenase, oxidoreductase, ni-b state, ready state
  
• 1wuk.pdb. oxidoreductase 07-dec-04 1wuk Mg Fe Ni
  Title: high resolution structure of the oxidized state of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f
  Author: h. ogata, s. hirota, a. nakahara, h. komori, n. shibata, t. kato, k. kano, y. higuchi
  Keywords: [nife]hydrogenase, oxidoreductase, oxidized state
  
• 1wul.pdb. oxidoreductase 07-dec-04 1wul Mg Fe Ni
  Title: high resolution structure of the reduced state of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f
  Author: h. ogata, s. hirota, a. nakahara, h. komori, n. shibata, t. kato, k. kano, y. higuchi
  Keywords: [nife]hydrogenase, oxidoreductase, reduced state
  
• 1xm8.pdb. hydrolase 01-oct-04 1xm8 Zn Fe
  Title: x-ray structure of glyoxalase ii from arabidopsis thaliana gene at2g31350
  Author: g. e. wesenberg, d. w. smith, g. n. phillips jr. , e. bitto, c. a. bingman, s. t. m. allard, center for eukaryotic structural genomics (cesg)
  Keywords: center for eukaryotic structural genomics
  
• 1xmt.pdb. structural genomics, unknown function 04-oct-04 1xmt Br
  Title: x-ray structure of gene product from arabidopsis thaliana at1g77540
  Author: g. e. wesenberg, d. w. smith, g. n. phillips jr. , e. bitto, c. a. bingman, s. t. m. allard, center for eukaryotic structural genomics (cesg)
  Keywords: protein structure initiative, cesg, at1g77540, putative acetyltransferase, psi, center for eukaryotic structural genomics, unknown function
  
• 2ate.pdb. lyase 24-aug-05 2ate Se
  Title: structure of the complex of pure with nitroair
  Author: t. j. kappock, i. i. mathews, j. b. zaugg, p. peng, a. a. hoskins, a. okamoto, s. e. ealick, j. stubbe
  Keywords: nitroair complex, lyase
  
• 2eue.pdb. transferase 28-oct-05 2eue
  Title: crystal structure of the protein kinase domain of yeast amp- activated protein kinase snf1
  Author: m. j. rudolph, g. a. amodeo, y. bai, l. tong
  Keywords: transferase
  
• 2fc8.pdb. rna binding protein 12-dec-05 2fc8 He Hg (NMR, 20 structures)
  Title: solution structure of the rrm_1 domain of ncl protein
  Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: rna binding protein
  
• 2fc9.pdb. rna binding protein 12-dec-05 2fc9 He Hg (NMR, 20 structures)
  Title: solution structure of the rrm_1 domain of ncl protein
  Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: rna binding protein
  
• 2fk5.pdb. lyase 04-jan-06 2fk5 Cl
  Title: crystal structure of l-fuculose-1-phosphate aldolase from thermus thermophilus hb8
  Author: j. jeyakanthan, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: metal binding, fuculose phosphate, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses, lyase
  
• 2flf.pdb. lyase 06-jan-06 2flf
  Title: crystal structure of l-fuculose-1-phosphate aldolase from thermus thermophilus hb8
  Author: j. jeyakanthan, s. yokoyama, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: metal binding, fuculose phosphate, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses, lyase
  
• 2i5v.pdb. de novo protein 25-aug-06 2i5v
  Title: crystal structure of ospa mutant
  Author: k. makabe, v. terechko, s. koide
  Keywords: de novo protein
  
• 2igs.pdb. structural genomics, unknown function 25-sep-06 2igs Se
  Title: crystal structure of the protein of unknown function from pseudomonas aeruginosa
  Author: y. kim, a. joachimiak, t. skarina, o. egorova, a. edwards, a. savchenko, midwest center for structural genomics (mcsg)
  Keywords: alpha-beta, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 2j3d.pdb. hydrolase 20-aug-06 2j3d Mg
  Title: native monoclinic form of torpedo acetylcholinesterase
  Author: m. harel, j. l. sussman
  Keywords: hydrolase
  
• 2jf1.pdb. cell adhesion 25-jan-07 2jf1
  Title: crystal structure of the filamin a repeat 21 complexed with the integrin beta2 cytoplasmic tail peptide
  Author: t. kiema, j. ylanne
  Keywords: immunoglobulin like
  
• 2jfw.pdb. isomerase 06-feb-07 2jfw
  Title: crystal structure of enterococcus faecium glutamate racemase in complex with tartrate
  Author: t. lundqvist
  Keywords: isomerase, glutamate racemase
  
• 2jhe.pdb. transcription 21-feb-07 2jhe
  Title: n-terminal domain of tyrr transcription factor (residues 1 - 190)
  Author: d. verger, p. d. carr, t. kwok, d. l. ollis
  Keywords: aromatic hydrocarbons catabolism, tyrr protein, transcription, nucleotide-binding, transcription regulation, activator, repressor, atp-binding, dna-binding, two-component regulatory system
  
• 2jqi.pdb. cell cycle 01-jun-07 2jqi He Hg (NMR, 20 structures)
  Title: nmr structure of the rad53 fha1 domain in complex with a phosphothreonien peptide derived from rad53 scd1
  Author: c. yuan, a. mahajan, m. tsai
  Keywords: cell cycle
  
• 2jqj.pdb. cell cycle 02-jun-07 2jqj He Hg (NMR, 20 structures)
  Title: nmr structure of yeast dun1 fha domain
  Author: c. yuan, h. lee, c. chang, j. heierhorst, m. tsai
  Keywords: cell cycle
  
• 2jql.pdb. cell cycle 02-jun-07 2jql He Hg (NMR, 20 structures)
  Title: nmr structure of the yeast dun1 fha domain in complex with a doubly phosphorylated (pt) peptide derived from rad53 scd1
  Author: c. yuan, h. lee, c. chang, j. heierhorst, m. tsai
  Keywords: cell cycle
  
• 2jyo.pdb. cytokine 14-dec-07 2jyo He Hg (NMR, 20 structures)
  Title: nmr solution structure of human mip-3alpha/ccl20
  Author: d. i. chan, h. n. hunter, b. f. tack, h. j. vogel
  Keywords: chemokine, cytokine, alternative splicing, antibiotic, antimicrobial, chemotaxis, inflammatory response, polymorphism, secreted
  
• 2jyq.pdb. transferase 17-dec-07 2jyq He Hg (NMR, 20 structures)
  Title: nmr structure of the apo v-src sh2 domain
  Author: j. d. taylor, a. ababou, m. a. williams, j. e. ladbury
  Keywords: src, sh2, src homology 2, atp-binding, kinase, lipoprotein, myristate, nucleotide-binding, oncogene, phosphoprotein, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
  
• 2k19.pdb. antimicrobial protein 25-feb-08 2k19 He Hg (NMR, 20 structures)
  Title: nmr solution structure of pisi
  Author: l. a. martin-visscher, t. sprules, l. j. gursky, j. c. vederas
  Keywords: immunity protein, bacteriocin, immune system, antimicrobial protein
  
• 2k1c.pdb. viral protein 29-feb-08 2k1c He Hg (NMR, 20 structures)
  Title: nmr structure of the c-terminal domain of hiv-1 capsid in complex with peptide inhibitor
  Author: s. bhattacharya, h. zhang, a. k. debnath, d. cowburn
  Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger, viral protein
  
• 2k29.pdb. transcription 28-mar-08 2k29 He Hg (NMR, 20 structures)
  Title: structure of the dbd domain of e. coli antitoxin relb
  Author: g. li, y. zhang, m. inouye, m. ikura
  Keywords: ribbon-helix-helix, antitoxin, repressor, stress response, transcription, transcription regulation
  
• 2k39.pdb. signaling protein 25-apr-08 2k39 He Hg (NMR, 116 structures)
  Title: recognition dynamics up to microseconds revealed from rdc derived ubiquitin ensemble in solution
  Author: o. f. lange, n. a. lakomek, c. fares, g. schroder, k. walter, s. becker, j. meiler, h. grubmuller, c. griesinger, b. l. de groot
  Keywords: rdc, residual dipolar coupling, , cytoplasm, nucleus, ubl conjugation, signaling protein
  
• 2ow6.pdb. hydrolase 15-feb-07 2ow6 Zn
  Title: golgi alpha-mannosidase ii complex with (1r,5s,6s,7r,8s)-1- thioniabicyclo[4.3.0]nonan-5,7,8-triol chloride
  Author: d. a. kuntz
  
  
• 2ow7.pdb. hydrolase 15-feb-07 2ow7 Zn
  Title: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1- thioniabicyclo[4.3.0]nonan-7,8-diol chloride
  Author: d. a. kuntz
  
  
• 2p4m.pdb. luminescent protein 12-mar-07 2p4m I
  Title: high ph structure of rtms5 h146s variant
  Author: j. m. battad, p. g. wilmann, s. olsen, e. byres, s. c. smith, s. g. dove, k. n. turcic, r. j. devenish, j. rossjohn, m. prescott
  Keywords: gfp-like protein, chromophore, chromoprotein, luminescent protein
  
• 2pd3.pdb. oxidoreductase 31-mar-07 2pd3 Cl
  Title: crystal structure of the helicobacter pylori enoyl-acyl carrier protein reductase in complex with hydroxydiphenyl ether compounds, triclosan and diclosan
  Author: h. h. lee, j. h. moon, s. w. suh
  Keywords: helicobacter pylori, type ii fatty acid biosynthesis, enoyl-acp-reductase, fabi, oxidoreductase
  
• 2pd4.pdb. oxidoreductase 31-mar-07 2pd4 Cl
  Title: crystal structure of the helicobacter pylori enoyl-acyl carrier protein reductase in complex with hydroxydiphenyl ether compounds, triclosan and diclosan
  Author: h. h. lee, j. h. moon, s. w. suh
  Keywords: helicobacter pylori, type ii fatty acid biosynthesis, enoyl-acp-reductase, fabi, oxidoreductase
  
• 2qc7.pdb. chaperone 19-jun-07 2qc7
  Title: crystal structure of the protein-disulfide isomerase related chaperone erp29
  Author: n. n. barak, m. sevvana, p. neumann, m. malesevic, k. naumann, g. fischer, g. m. sheldrick, m. t. stubbs, d. m. ferrari
  Keywords: d domain (residues 154-261), chaperone
  
• 2qdc.pdb. hydrolase 20-jun-07 2qdc
  Title: crystal structure of the heptp catalytic domain d236a mutant
  Author: d. a. critton, a. tortajada, r. page
  Keywords: human hematopoietic tyrosine phosphatase catalytic domain mutant, lc-ptp, ptpn7, hydrolase
  
• 2qdm.pdb. hydrolase 21-jun-07 2qdm
  Title: crystal structure of the heptp catalytic domain c270s/d236a/q314a mutant
  Author: d. a. critton, a. tortajada, r. page
  Keywords: human hematopoietic tyrosine phosphatase catalytic domain mutant, lc-ptp, ptpn7, hydrolase
  
• 2qdp.pdb. hydrolase 21-jun-07 2qdp
  Title: crystal structure of the heptp catalytic domain c270s mutant crystallized in ammonium acetate
  Author: d. a. critton, a. tortajada, r. page
  Keywords: human hematopoietic tyrosine phosphatase catalytic domain mutant, lc-ptp, ptpn7, hydrolase
  
• 2qhl.pdb. immune system 02-jul-07 2qhl
  Title: crystal structure of novel immune-type receptor 10 extracellular fragment from ictalurus punctatus
  Author: d. a. ostrov, j. a. hernandez prada, r. n. haire, j. p. cannon, a. t. magis, k. bailey, g. w. litman
  Keywords: immune- type receptor, immune system
  
• 2qje.pdb. hydrolase 07-jul-07 2qje Zn Fe
  Title: crystal structure of the complex of bovine c-lobe with amygdalin at 2.3a resolution
  Author: r. mir, r. jain, s. kumar, m. sinha, n. singh, s. sharma, p. kaur, a. srinivasan, a. bhushan, t. p. singh
  Keywords: c-lobe, aymgdalin, antibiotic, antimicrobial, glycoprotein, hydrolase, ion transport, iron, iron transport, metal-binding, protease, secreted, serine protease, transport
  
• 2qjk.pdb. electron transport 07-jul-07 2qjk Sr Fe
  Title: crystal structure analysis of mutant rhodobacter sphaeroides bc1 with stigmatellin and antimycin
  Author: l. esser
  Keywords: inner membrane, oxidoreductase
  
• 2qjp.pdb. electron transport 08-jul-07 2qjp Sr Fe
  Title: crystal structure of wild type rhodobacter sphaeroides with stigmatellin and antimycin inhibited
  Author: l. esser, d. xia
  Keywords: inner membrane, oxidoreductase
  
• 2qll.pdb. transferase 13-jul-07 2qll
  Title: human liver glycogen phosphorylase- gl complex
  Author: a. pautsch, r. streicher, o. wissdorf, n. stadler
  Keywords: phosphorylation, polymorphism, pyridoxal phosphate, transferase
  
• 2qmy.pdb. oxidoreductase 17-jul-07 2qmy Zn
  Title: quinone reductase 2 in complex with adrenochrome
  Author: z. zhang, y. fu, l. buryanovskky
  Keywords: adrenochrome, parkinson's disease, cytoplasm, fad, flavoprotein, metal-binding, oxidoreductase, polymorphism, zinc
  
• 2qmz.pdb. oxidoreductase 17-jul-07 2qmz Zn
  Title: quinone reductase 2 in complex with dopamine
  Author: y. fu, l. buryanovskyy, z. zhang
  Keywords: dopamine, dopamine oxidation, parkinson's disease, cytoplasm, fad, flavoprotein, metal- binding, oxidoreductase, polymorphism, zinc
  
• 2qtk.pdb. membrane protein 02-aug-07 2qtk
  Title: crystal structure of the outer membrane protein opdk from pseudomonas aeruginosa
  Author: s. biswas, b. van den berg
  Keywords: beta barrel, vanillate transport, porin
  
• 2qty.pdb. hydrolase 03-aug-07 2qty Mg
  Title: crystal structure of mouse adp-ribosylhydrolase 3 (marh3)
  Author: c. mueller-dieckmann
  Keywords: adp-ribose, alternative splicing, cytoplasm, magnesium, metal-binding, nucleus
  
• 2qxv.pdb. gene regulation 13-aug-07 2qxv
  Title: structural basis of ezh2 recognition by eed
  Author: z. han
  Keywords: polycomb repressive complex 2, alternative splicing, dna-binding, nucleus, phosphorylation, transcription, transcription regulation, gene regulation
  
• 2qyg.pdb. unknown function 14-aug-07 2qyg
  Title: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas palustris
  Author: h. li, s. chan, f. r. tabita, d. eisenberg
  Keywords: unknown function
  
• 2r13.pdb. metal binding protein 22-aug-07 2r13 Cl Fe
  Title: crystal structure of human mitoneet reveals a novel [2fe- 2s] cluster coordination
  Author: x. hou, r. liu, s. ross, e. j. smart, h. zhu, w. gong
  Keywords: acetylation, metal-binding, zinc, zinc-finger, metal binding protein
  
• 2r3v.pdb. transferase 30-aug-07 2r3v
  Title: the biochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism
  Author: z. fu, n. e. voynova, h. m. miziorko, j. p. kim
  Keywords: sterol biosynthesis, transferase
  
• 2r42.pdb. transferase 30-aug-07 2r42 Mg
  Title: the biochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism
  Author: z. fu, n. e. voynova, h. m. miziorko, j. p. kim
  Keywords: farnesyl thiodiphosphate, atp-binding, cholesterol biosynthesis, cytoplasm, lipid synthesis, nucleotide-binding, peroxisome, steroid biosynthesis, sterol biosynthesis, transferase
  
• 2rdi.pdb. transferase 24-sep-07 2rdi
  Title: snapshots of a y-family dna polymerase in replication: dpo4 in apo and binary/ternary complex forms
  Author: j. h. y. wong, h. ling
  Keywords: apo-enzyme, y-family, cytoplasm, dna damage, dna repair, dna replication, dna-binding, dna-directed dna polymerase, magnesium, metal-binding, mutator protein, nucleotidyltransferase, transferase
  
• 2rdj.pdb. transferase/dna 24-sep-07 2rdj Ca
  Title: snapshots of a y-family dna polymerase in replication: dpo4 in apo and binary/ternary complex forms
  Author: j. h. y. wong, h. ling
  Keywords: transferase, transferase/dna complex
  
• 2rov.pdb. transferase 25-apr-08 2rov He Hg (NMR, 20 structures)
  Title: the split ph domain of rock ii
  Author: w. wen, m. zhang
  Keywords: atp-binding, coiled coil, cytoplasm, kinase, membrane, metal-binding, nucleotide-binding, phorbol-ester binding, phosphoprotein, serine/threonine-protein kinase, transferase, zinc, zinc-finger
  
• 2row.pdb. transferase 25-apr-08 2row Hg Zn (NMR, 20 structures)
  Title: the c1 domain of rock ii
  Author: w. wen, m. zhang
  Keywords: atp-binding, coiled coil, cytoplasm, kinase, membrane, metal-binding, nucleotide-binding, phorbol-ester binding, phosphoprotein, serine/threonine-protein kinase, transferase, zinc, zinc-finger
  
• 2ux1.pdb. oxidoreductase 26-mar-07 2ux1 Cl Zn Ca
  Title: identification of two zinc-binding sites in the streptococcus suis dpr protein
  Author: h. havukainen, a. kauko, a. t. pulliainen, s. haataja, w. meyer-klaucke, j. finne, a. c. papageorgiou
  Keywords: zinc, metal-binding, oxidoreductase
  
• 2uzq.pdb. hydrolase 01-may-07 2uzq
  Title: protein phosphatase, new crystal form
  Author: r. c. hillig, u. eberspaecher
  Keywords: cell division, phosphorylation, dual specificity, mitosis, cell cycle, phosphatase, protein phosphatase
  
• 2v15.pdb. oxidoreductase 22-may-07 2v15 Cl Tb Ca
  Title: terbium binding in streptococcus suis dpr protein
  Author: h. havukainen, a. c. papageorgiou, a. kauko
  Keywords: iron, dps-family, ferroxidase, iron-binding, peroxide resistance, iron storage, metal-binding, ferritin-like
  
• 2v1z.pdb. hydrolase 31-may-07 2v1z Zn
  Title: structure of a tem-1 beta-lactamase insertant allosterically regulated by kanamycin and anions.
  Author: c. evrard, h. barrios, p. mathonet, p. soumillion, j. fastrez, j. p. declercq
  Keywords: hydrolase, lactamase, insertion mutant, antibiotic resistance, transposable element, allosteric regulation
  
• 2v20.pdb. hydrolase 31-may-07 2v20 Zn
  Title: structure of a tem-1 beta-lactamase insertant allosterically regulated by kanamycin and anions. complex with sulfate.
  Author: c. evrard, h. barrios, p. mathonet, p. soumillion, j. fastrez, j. p. declercq
  Keywords: hydrolase, lactamase, insertion mutant, antibiotic resistance, transposable element, allosteric regulation
  
• 2v2i.pdb. metal transport 06-jun-07 2v2i Cd
  Title: wild type recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding
  
• 2v2j.pdb. metal transport 06-jun-07 2v2j Cd
  Title: wild type recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding, metal transport
  
• 2v2l.pdb. metal transport 06-jun-07 2v2l Cd
  Title: mutant (e53,56,57,60q) recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding, metal transport
  
• 2v2m.pdb. metal transport 06-jun-07 2v2m Cd
  Title: mutant (e53,56,57,60q) recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding, metal transport
  
• 2v2n.pdb. metal transport 06-jun-07 2v2n Cd
  Title: mutant r59m recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding
  
• 2v2o.pdb. metal transport 06-jun-07 2v2o Cd
  Title: mutant r59m recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding, metal transport
  
• 2v2p.pdb. metal transport 06-jun-07 2v2p Cd
  Title: mutant (e53,56,57,60q and r59m) recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding
  
• 2v2r.pdb. metal transport 06-jun-07 2v2r Cd
  Title: mutant (e53,56,57,60q and r59m) recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding, metal transport
  
• 2v2s.pdb. metal transport 06-jun-07 2v2s Cd
  Title: mutant r59m recombinant horse spleen apoferritin crystallized in acidic conditions
  Author: n. de val, j. p. declercq
  Keywords: iron, haemin, apoferritin, iron storage, metal-binding
  
• 2v31.pdb. ligase 11-jun-07 2v31 He Hg (NMR, 20 structures)
  Title: structure of first catalytic cysteine half-domain of mouse ubiquitin-activating enzyme
  Author: l. jaremko, m. jaremko, w. wojciechowski, r. filipek, r. h. szczepanowski, m. bochtler, i. zhukov
  Keywords: phosphorylation, catalytic domain, heteronuclear nmr, first catalytic cysteine half-domain, e1 protein, atp-binding, ubiquitination, nucleotide-binding, ubl conjugation pathway
  
• 2v35.pdb. hydrolase 12-jun-07 2v35 Na
  Title: porcine pancreatic elastase in complex with inhibitor jm54
  Author: t. f. oliveira, j. mulchande, l. martins, r. moreira, j. iley, m. archer
  Keywords: serine proteases, calcium, zymogen, protease, elastase, hydrolase, inhibition, beta-lactams, metal-binding
  
• 2v3h.pdb. blood clotting 18-jun-07 2v3h Na Ca
  Title: thrombin with 3-cycle no f
  Author: d. w. banner, u. obst
  Keywords: glycoprotein, cleavage on pair of basic residues, kringle, calcium, zymogen, protease, hydrolase
  
• 2v3o.pdb. blood clotting 19-jun-07 2v3o F Na Ca
  Title: thrombin with 3-cycle with f
  Author: d. w. banner, h. p. wessel
  Keywords: gamma-carboxyglutamic acid, pharmaceutical, serine protease, calcium-binding, kringle, calcium, zymogen, protease, hydrolase
  
• 2v7d.pdb. signaling protein 30-jul-07 2v7d
  Title: 14-3-3 protein zeta in complex with thr758 phosphorylated integrin beta2 peptide
  Author: h. takala, j. ylanne
  Keywords: integrin, receptor, cytoplasm, acetylation, transmembrane, beta2 integrin, phosphorylation, disease mutation, pyrrolidone carboxylic acid, 14-3-3 zeta, glycoprotein, cell adhesion, signaling protein
  
• 2vso.pdb. hydrolase/translation 28-apr-08 2vso
  Title: crystal structure of a translation initiation complex
  Author: p. schutz, m. bumann, a. e. oberholzer, c. bieniossek, m. altmann, h. trachsel, u. baumann
  Keywords: rna-binding
  
• 2vsx.pdb. translation/hydrolase 30-apr-08 2vsx
  Title: crystal structure of a translation initiation complex
  Author: p. schutz, m. bumann, a. e. oberholzer, c. bieniossek, m. altmann, h. trachsel, u. baumann
  Keywords: rna-binding
  
• 2vt4.pdb. receptor 09-may-08 2vt4 Na
  Title: turkey beta1 adrenergic receptor with stabilising mutations and bound cyanopindolol
  Author: a. warne, m. j. serrano-vega, j. g. baker, r. moukhametzianov, p. c. edwards, r. henderson, a. g. w. leslie, c. g. tate, g. f. x. schertler
  Keywords: seven-helix receptor, lipoprotein, 7tm receptor, glycoprotein, transmembrane
  
• 2vty.pdb. apoptosis 19-may-08 2vty
  Title: vaccinia virus anti-apoptotic f1l is a novel bcl-2-like domain swapped dimer
  Author: m. kvansakul, h. yang, w. d. fairlie, p. e. czabotar, s. f. fischer, m. a. perugini, d. c. s. huang, p. m. colman
  Keywords: apoptosis, vaccinia virus
  
• 2vuf.pdb. transport protein 24-may-08 2vuf
  Title: human serum albumin complexed with fusidic acid
  Author: p. a. zunszain, j. ghuman, s. curry
  Keywords: cleavage on pair of basic residues
  
• 2vvt.pdb. isomerase 11-jun-08 2vvt F
  Title: glutamate racemase (muri) from e. faecalis in complex with a 9-benzyl purine inhibitor
  Author: b. geng, g. breault, j. comita-prevoir, r. petrichko, c. eyermann, t. lundqvist, p. doig, e. gorseth, b. noonan
  Keywords: glutamate racemase, peptidoglycan synthesis, cell wall biogenesis/degradation, cell shape, benzyl purine, muri inhibitor
  
• 2vvz.pdb. hydrolase 13-jun-08 2vvz Cl
  Title: structure of the catalytic domain of streptococcus pneumoniae sialidase nana
  Author: g. xu, x. li, p. w. andrew, g. l. taylor
  Keywords: cell wall, sialidase, hydrolase, peptidoglycan-anchor, glycosidase, neuraminidase, virulence factor
  
• 2vw0.pdb. hydrolase 13-jun-08 2vw0
  Title: crystal structure of the nanb sialidase from streptococcus pneumoniae
  Author: g. xu, j. a. potter, r. j. m. russell, m. r. oggioni, p. w. andrew, g. l. taylor
  Keywords: sialidase, glycosidase, drug design, neuraminidase, virulence factor
  
• 2vw1.pdb. hydrolase 13-jun-08 2vw1
  Title: crystal structure of the nanb sialidase from streptococcus pneumoniae
  Author: g. xu, j. a. potter, r. j. m. russell, m. r. oggioni, p. w. andrew, g. l. taylor
  Keywords: sialidase, neuraminidase, virulence factor, drug design
  
• 2vw2.pdb. hydrolase 13-jun-08 2vw2
  Title: crystal structure of the nanb sialidase from streptococcus pneumoniae
  Author: g. xu, j. a. potter, r. j. m. russell, m. r. oggioni, p. w. andrew, g. l. taylor
  Keywords: sialidase, glycosidase, drug design, neuraminidase, virulence factor
  
• 2ysu.pdb. transport protein/hydrolase 04-apr-07 2ysu
  Title: structure of the complex between btub and colicin e2 receptor binding domain
  Author: w. a. cramer, o. sharma, e. yamashita
  Keywords: coiled-coil, transport protein/hydrolase complex
  
• 2yvc.pdb. cell adhesion 11-apr-07 2yvc
  Title: crystal structure of the radixin ferm domain complexed with the nep cytoplasmic tail
  Author: s. terawaki, k. kitano, t. hakoshima
  Keywords: cell adhesion
  
• 2z1p.pdb. cell adhesion 11-may-07 2z1p
  Title: the enterococcus faecalis mscramm ace binds its ligands by the collagen hug model
  Author: k. ponnuraj
  Keywords: ace, collagen, cell adhesion
  
• 2z44.pdb. chaperone 12-jun-07 2z44 Se
  Title: crystal structure of selenomethionine-labeled orf134
  Author: y. tomimoto, k. ihara, t. onizuka, s. kanai, h. ashida, a. yokota, s. tanaka, h. miyasaka, y. yamada, r. kato, s. wakatsuki
  Keywords: helix bundle
  
• 2z45.pdb. chaperone 12-jun-07 2z45 Zn
  Title: crystal structure of zn-bound orf134
  Author: y. tomimoto, k. ihara, t. onizuka, s. kanai, h. ashida, a. yokota, s. tanaka, h. miyasaka, y. yamada, r. kato, s. wakatsuki
  Keywords: helix bundle
  
• 2z46.pdb. chaperone 12-jun-07 2z46
  Title: crystal structure of native-orf134
  Author: y. tomimoto, k. ihara, t. onizuka, s. kanai, h. ashida, a. yokota, s. tanaka, h. miyasaka, y. yamada, r. kato, s. wakatsuki
  Keywords: helix bundle
  
• 2z5l.pdb. transferase 14-jul-07 2z5l
  Title: the first ketoreductase of the tylosin pks
  Author: a. t. keatinge-clay, r. m. stroud
  Keywords: rossman fold, polyketide synthase ketoreductase, transferase
  
• 2z5u.pdb. oxidoreductase 17-jul-07 2z5u
  Title: crystal structure of lysine-specific histone demethylase 1
  Author: s. mimasu, t. sengoku, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: repressor, transcription regulation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2z70.pdb. hydrolase 09-aug-07 2z70 Ca
  Title: e.coli rnase 1 in complex with d(cgcgatcgcg)
  Author: s. martinez-rodriguez, r. loris, j. messens
  Keywords: hydrolase, cytoplasm, endonuclease, periplasm
  
• 2z74.pdb. dna, rna 15-aug-07 2z74 Mg
  Title: t. tengcongensis glms ribozyme bound to glucose-6-phosphate
  Author: d. j. klein, s. r. wilkinson, m. d. been, a. r. ferre-d'amare
  Keywords: riboswitch, glucose-6-phosphate, glucosamine-6- phosphate, dna, rna
  
• 2z75.pdb. dna, rna 15-aug-07 2z75 Mg
  Title: t. tengcongensis glms ribozyme bound to glucosamine-6- phosphate
  Author: d. j. klein, s. r. wilkinson, m. d. been, a. r. ferre-d'amare
  Keywords: riboswitch, glucose-6-phosphate, glucosamine-6- phosphate, dna, rna
  
• 2z8i.pdb. transferase 05-sep-07 2z8i
  Title: crystal structure of escherichia coli gamma- glutamyltranspeptidase in complex with azaserine
  Author: k. wada, m. irie, k. fukuyama
  Keywords: acyltransferase, glutathione biosynthesis, periplasm, transferase, zymogen
  
• 2z8j.pdb. transferase 05-sep-07 2z8j
  Title: crystal structure of escherichia coli gamma- glutamyltranspeptidase in complex with azaserine prepared in the dark
  Author: k. wada, m. irie, k. fukuyama
  Keywords: covalent bond with thr391, acyltransferase, glutathione biosynthesis, periplasm, transferase, zymogen
  
• 2z8k.pdb. transferase 05-sep-07 2z8k
  Title: crystal structure of escherichia coli gamma- glutamyltranspeptidase in complex with acivicin
  Author: k. wada, m. irie, k. fukuyama
  Keywords: acyltransferase, glutathione biosynthesis, periplasm, transferase, zymogen
  
• 2zau.pdb. transferase 10-oct-07 2zau
  Title: crystal structure of an n-terminally truncated selenophosphate synthetase from aquifex aeolicus
  Author: s. sekine, e. matsumoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 2zay.pdb. signaling protein 12-oct-07 2zay
  Title: crystal structure of response regulator from desulfuromonas acetoxidans
  Author: a. a. fedorov, e. v. fedorov, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgxrc, target 11006u, response regulator, psi-2, protein structure initiative, new york sgx research center for structural genomics, signaling protein
  
• 2ze4.pdb. hydrolase 05-dec-07 2ze4
  Title: crystal structure of phospholipase d from streptomyces antibioticus
  Author: a. suzuki, k. kakuno, r. saito, y. iwasaki, t. yamane, t. yamane
  Keywords: hydrolase, lipid degradation, secreted
  
• 2ze9.pdb. hydrolase 06-dec-07 2ze9
  Title: crystal structure of h168a mutant of phospholipase d from streptomyces antibioticus, as a complex with phosphatidylcholine
  Author: a. suzuki, h. toda, y. iwasaki, t. yamane, t. yamane
  Keywords: hydrolase, lipid degradation, secreted
  
• 2zic.pdb. hydrolase 14-feb-08 2zic Ca
  Title: crystal structure of streptococcus mutans dextran glucosidase
  Author: h. hondoh, w. saburi, h. mori, m. okuyama, t. nakada, y. matsuura, a. kimura
  Keywords: (beta/alpha)8-barrel, hydrolase
  
• 2zid.pdb. hydrolase 14-feb-08 2zid Ca
  Title: crystal structure of dextran glucosidase e236q complex with isomaltotriose
  Author: h. hondoh, w. saburi, h. mori, m. okuyama, t. nakada, y. matsuura, a. kimura
  Keywords: (beta/alpha)8-barrel, hydrolase
  
• 2zit.pdb. biosynthetic protein/transferase 24-feb-08 2zit
  Title: structure of the eef2-exoa-nad+ complex
  Author: r. jorgensen, a. r. merrill
  Keywords: biosynthetic protein/transferase complex
  
• 2zl1.pdb. protein binding 02-apr-08 2zl1
  Title: mp1-p14 scaffolding complex
  Author: j. d. schrag, m. cygler, c. munger, a. magloire
  Keywords: complex, alpha/beta, endosome, membrane, lysosome, protein binding
  
• 2zl9.pdb. hormone 04-apr-08 2zl9
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zla.pdb. hormone 04-apr-08 2zla
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zlc.pdb. hormone 04-apr-08 2zlc
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zlt.pdb. oxygen storage, oxygen transport 10-apr-08 2zlt Fe
  Title: horse methemoglobin high salt, ph 7.0
  Author: p. s. kaushal, r. sankaranarayanan, m. vijayan
  Keywords: oxygen storage
  
• 2zlu.pdb. oxygen storage, oxygen transport 10-apr-08 2zlu Fe
  Title: horse methemoglobin high salt, ph 7.0 (88% relative humidity)
  Author: p. s. kaushal, r. sankaranarayanan, m. vijayan
  Keywords: oxygen storage
  
• 2zlv.pdb. oxygen storage, oxygen transport 10-apr-08 2zlv Fe
  Title: horse methemoglobin high salt, ph 7.0 (79% relative humidity)
  Author: p. s. kaushal, r. sankaranarayanan, m. vijayan
  Keywords: oxygen storage
  
• 2zlw.pdb. oxygen storage, oxygen transport 10-apr-08 2zlw Fe
  Title: horse methemoglobin high salt, ph 7.0 (75% relative humidity)
  Author: p. s. kaushal, r. sankaranarayanan, m. vijayan
  Keywords: oxygen storage
  
• 2zlx.pdb. oxygen storage, oxygen transport 10-apr-08 2zlx Fe
  Title: horse methemoglobin high salt, ph 7.0 (66% relative humidity)
  Author: p. s. kaushal, r. sankaranarayanan, m. vijayan
  Keywords: oxygen storage
  
• 2zm3.pdb. transferase 10-apr-08 2zm3 Br
  Title: complex structure of insulin-like growth factor receptor and isoquinolinedione inhibitor
  Author: w. xu, s. c. mayer, f. boschelli, m. johnson, b. dwyer
  Keywords: transferase, transmembrane, tyrosine-protein kinase
  
• 2zmb.pdb. hydrolase 15-apr-08 2zmb Zn Fe
  Title: crystal structure of the complex of c-terminal lobe of bovine lactoferrin with parecoxib at 2.9 a resolution
  Author: r. jain, r. mir, m. sinha, n. singh, p. kaur, s. sharma, t. p. singh
  Keywords: parecoxib, antibiotic, antimicrobial, glycoprotein, hydrolase, ion transport, iron, iron transport, metal- binding, protease, secreted, serine protease, transport
  
• 3b5t.pdb. immune system receptor 26-oct-07 3b5t Se
  Title: crystal structure of novel immune-type receptor 10 se-met extracellular fragment mutant n30d
  Author: d. a. ostrov, j. a. hernandez prada, r. n. haire, j. p. cannon, a. t. magis, k. . bailey, g. w. litman
  Keywords: immune- type receptor, immune system, immune system receptor
  
• 3bbr.pdb. membrane protein 11-nov-07 3bbr Cl
  Title: crystal structure of the iglur2 ligand binding core (s1s2j- n775s) in complex with a dimeric positive modulator as well as glutamate at 2.25 a resolution
  Author: j. s. kastrup, m. gajhede
  Keywords: palmitate, phosphorylation, postsynaptic cell membrane, rna editing, synapse, transmembrane, transport, membrane protein
  
• 3bdb.pdb. immune system 14-nov-07 3bdb
  Title: crystal structure of novel immune-type receptor 11 extracellular fragment from ictalurus punctatus including stalk region
  Author: d. a. ostrov, j. a. hernandez-prada, r. n. haire, j. p. cannon, a. t. magis, k. . bailey, g. w. litman
  Keywords: immune- type receptor, stalk region, immune system
  
• 3bex.pdb. transferase 20-nov-07 3bex
  Title: type iii pantothenate kinase from thermotoga maritima complexed with panothenate
  Author: k. yang, c. huerta, e. strauss, h. zhang
  Keywords: atp-binding, coenzyme a biosynthesis, cytoplasm, kinase, metal-binding, nucleotide-binding, potassium, transferase
  
• 3bf1.pdb. transferase 20-nov-07 3bf1
  Title: type iii pantothenate kinase from thermotoga maritima complexed with panothenate and adp
  Author: k. yang, c. huerta, e. strauss, h. zhang
  Keywords: atp-binding, coenzyme a biosynthesis, cytoplasm, kinase, metal-binding, nucleotide-binding, potassium, transferase
  
• 3bf3.pdb. transferase 20-nov-07 3bf3 Mg
  Title: type iii pantothenate kinase from thermotoga maritima complexed with product phosphopanothenate
  Author: k. yang, c. huerta, e. strauss, h. zhang
  Keywords: atp-binding, coenzyme a biosynthesis, cytoplasm, kinase, metal-binding, nucleotide-binding, potassium, transferase
  
• 3bfa.pdb. pheromone binding protein 21-nov-07 3bfa
  Title: crystal structure of a pheromone binding protein from apis mellifera in complex with the queen mandibular pheromone
  Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
  Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone, pheromone-binding protein
  
• 3bfb.pdb. pheromone binding protein 21-nov-07 3bfb Cl
  Title: crystal structure of a pheromone binding protein from apis mellifera in complex with the 9-keto-2(e)-decenoic acid
  Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
  Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone, pheromone-binding protein
  
• 3bfh.pdb. pheromone binding protein 21-nov-07 3bfh Cl
  Title: crystal structure of a pheromone binding protein from apis mellifera in complex with hexadecanoic acid
  Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
  Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone, hexadecanoic acid, pheromone-binding protein
  
• 3bfv.pdb. transferase 23-nov-07 3bfv Mg
  Title: crystal structure of the chimerical protein capab
  Author: v. olivares-illana, p. meyer, s. morera, s. nessler
  Keywords: p-loop protein, capsule biogenesis/degradation, exopolysaccharide synthesis, membrane, transmembrane, virulence, transferase
  
• 3bho.pdb. nuclear protein 28-nov-07 3bho
  Title: crystal structure of the 25kda subunit of human cleavage factor im
  Author: m. coseno, s. doublie
  Keywords: rna processing, cleavage factor, diadenosine tetraphosphate, mrna processing, nucleus, phosphoprotein, rna-binding, nuclear protein
  
• 3bnl.pdb. ribonucleic acid 14-dec-07 3bnl Co
  Title: crystal structure of the bacterial ribosomal decoding a site in the presence of [co(nh3)6]cl3
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bnn.pdb. ribonucleic acid 14-dec-07 3bnn
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bno.pdb. ribonucleic acid 14-dec-07 3bno Br
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site (br-derivative)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bnp.pdb. ribonucleic acid 14-dec-07 3bnp K
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site (a1555g mutant)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bnq.pdb. ribonucleic acid 14-dec-07 3bnq Sr K Br
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site in the presence of srcl2 (a1555g mutant, br-derivative)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bnr.pdb. ribonucleic acid 14-dec-07 3bnr K Br
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site in the presence of nonspecifically bound paromomycin (a1555g mutant, br-derivative)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bns.pdb. ribonucleic acid 14-dec-07 3bns K Br
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site (a1555g mutant, br-derivative)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bnt.pdb. ribonucleic acid 14-dec-07 3bnt Co Br Na
  Title: crystal structure of the homo sapiens mitochondrial ribosomal decoding site in the presence of [co(nh3)6]cl3 (a1555g mutant, br-derivative)
  Author: j. kondo, e. westhof
  Keywords: decoding site, rna
  
• 3bqi.pdb. cell adhesion 20-dec-07 3bqi
  Title: structure of a chondroitin sulphate binding dbl3x from a var2csa encoded pfemp1 protein
  Author: m. k. higgins
  Keywords: pregnancy, pfemp1, var2csa, dbl3x, chondroitin sulphate, cell adhesion
  
• 3bqk.pdb. cell adhesion 20-dec-07 3bqk
  Title: structure of a chondroitin sulphate binding dbl3x from a var2csa encoded pfemp1 protein in complex with sulphate
  Author: m. k. higgins
  Keywords: pregnancy, var2csa encoded pfemp1 protein, dbl3x domain, chondroitin sulphate a, cell adhesion
  
• 3bql.pdb. cell adhesion 20-dec-07 3bql
  Title: structure of a chondroitin sulphate binding dbl3x domain from a var2csa encoded pfemp1 protein
  Author: m. k. higgins
  Keywords: preganacy, var2csa encoded pfemp1 protein dbl3x domain, chondroitin sulphate a, cell adhesion
  
• 3br8.pdb. hydrolase 21-dec-07 3br8
  Title: crystal structure of acylphosphatase from bacillus subtilis
  Author: d. li, j. c. hu, b. xia, x. d. su
  Keywords: acp, yfll, hydrolase
  
• 3bt6.pdb. viral protein 27-dec-07 3bt6
  Title: crystal structure of influenza b virus hemagglutinin
  Author: q. wang, f. cheng, m. lu, x. tian, j. ma
  Keywords: membrane fusion, envelope protein, fusion protein, hemagglutinin, transmembrane, virion, glycoprotein, lipoprotein, palmitate, viral protein
  
• 3bur.pdb. oxidoreductase 03-jan-08 3bur
  Title: crystal structure of delta(4)-3-ketosteroid 5-beta- reductase in complex with nadp and testosterone. resolution: 1.62 a.
  Author: l. di costanzo, d. w. christianson
  Keywords: bile acid catabolism, cytoplasm, disease mutation, lipid metabolism, oxidoreductase, steroid metabolism
  
• 3buv.pdb. oxidoreductase 03-jan-08 3buv
  Title: crystal structure of human delta(4)-3-ketosteroid 5-beta- reductase in complex with nadp and hepes. resolution: 1.35 a.
  Author: l. di costanzo, j. drury, t. m. penning, d. w. christianson
  Keywords: bile acid catabolism, cytoplasm, disease mutation, lipid metabolism, oxidoreductase, steroid metabolism
  
• 3bv4.pdb. lyase 04-jan-08 3bv4
  Title: crystal structure of a rabbit muscle fructose-1,6- bisphosphate aldolase a dimer variant
  Author: m. sherawat, d. r. tolan, k. n. allen
  Keywords: acetylation, glycolysis, phosphoprotein, schiff base
  
• 3bv7.pdb. oxidoreductase 04-jan-08 3bv7
  Title: crystal structure of delta(4)-3-ketosteroid 5-beta- reductase in complex with nadp and glycerol. resolution: 1.79 a.
  Author: l. di costanzo, j. drury, t. m. penning, d. w. christianson
  Keywords: bile acid catabolism, cytoplasm, disease mutation, lipid metabolism, nadp, oxidoreductase, steroid metabolism
  
• 3bwf.pdb. transferase 09-jan-08 3bwf Os
  Title: crystal structure of the human pim1 in complex with an osmium compound
  Author: j. maksimoska, p. filippakopoulos, s. knapp, e. meggers
  Keywords: serine/threonine-protein kinase
  
• 3bwm.pdb. transferase 09-jan-08 3bwm Mg K
  Title: crystal structure of human catechol o-methyltransferase with bound sam and dnc
  Author: k. rutherford, i. le trong, r. e. stenkamp, w. w. parson
  Keywords: transferase, transmembrane
  
• 3bwq.pdb. viral protein 10-jan-08 3bwq
  Title: structure of free sv40 vp1 pentamer
  Author: u. neu, t. stehle
  Keywords: polyomavirus, ganglioside, gm1, viral receptor, virus attachment, capsid protein, late protein, nucleus, virion, viral protein
  
• 3bwr.pdb. viral protein 10-jan-08 3bwr
  Title: sv40 vp1 pentamer in complex with gm1 oligosaccharide
  Author: u. neu, t. stehle
  Keywords: gm1, viral receptor, viral attachment, ganglioside, vp1, polyomaviruses, capsid protein, late protein, nucleus, virion, viral protein
  
• 3c31.pdb. membrane protein 27-jan-08 3c31 Cl Li
  Title: crystal structure of glur5 ligand-binding core in complex with lithium at 1.49 angstrom resolution
  Author: m. l. mayer
  
  
• 3c32.pdb. membrane protein 27-jan-08 3c32 Cl Na
  Title: crystal structure of glur5 ligand-binding core in complex with sodium at 1.72 angstrom resolution
  Author: m. l. mayer
  
  
• 3c33.pdb. membrane protein 27-jan-08 3c33 Cl K
  Title: crystal structure of glur5 ligand-binding core in complex with potassium at 1.78 angstrom resolution
  Author: m. l. mayer
  
  
• 3c34.pdb. membrane protein 27-jan-08 3c34 Cl Rb
  Title: crystal structure of glur5 ligand-binding core in complex with rubidium at 1.82 angstrom resolution
  Author: m. l. mayer
  
  
• 3c35.pdb. membrane protein 27-jan-08 3c35 Cl Cs
  Title: crystal structure of glur5 ligand-binding core in complex with cesium at 1.97 angstrom resolution
  Author: m. l. mayer
  
  
• 3c36.pdb. membrane protein 27-jan-08 3c36 Cl
  Title: crystal structure of glur5 ligand-binding core in complex with ammonium ions at 1.68 angstrom resolution
  Author: m. l. mayer
  
  
• 3c3f.pdb. de novo protein 28-jan-08 3c3f He Hg
  Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-alpha-beta) backbone
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, coiled coil, unknown function, de novo protein
  
• 3c3g.pdb. de novo protein 28-jan-08 3c3g Hg
  Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-beta) backbone
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, coiled coil, alpha/beta-peptide, unknown function, de novo protein
  
• 3c3h.pdb. de novo protein 28-jan-08 3c3h Hg
  Title: alpha/beta-peptide helix bundles: a gcn4-pli analogue with an (alpha-alpha-beta) backbone and cyclic beta residues
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, alpha/beta-peptide, coiled coil, unknown function, de novo protein
  
• 3cab.pdb. pheromone-binding protein 19-feb-08 3cab
  Title: crystal structure of a pheromone binding protein from apis mellifera soaked at ph 7.0
  Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
  Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone, pheromone-binding protein
  
• 3cap.pdb. signaling protein 20-feb-08 3cap
  Title: crystal structure of native opsin: the g protein-coupled receptor rhodopsin in its ligand-free state
  Author: j. h. park, p. scheerer, k. p. hofmann, h. -w. choe, o. p. ernst
  Keywords: photoreceptor protein, sensory transduction, transducer, transmembrane, vision, signaling protein
  
• 3cdn.pdb. pheromone-binding protein 27-feb-08 3cdn Cl
  Title: crystal structure of a pheromone binding protein from apis mellifera soaked at ph 4.0
  Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
  Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone, pheromone-binding protein
  
• 3cld.pdb. transcription 18-mar-08 3cld F
  Title: ligand binding domain of the glucocorticoid receptor complexed with fluticazone furoate
  Author: l. m. shewchuk, i. mclay, e. stewart, k. b. biggadike, a. m. hassell, r. k. bledsoe
  Keywords: pseudohermaphroditism, steroid-binding, transcription, transcription regulation, ubl conjugation, zinc, zinc-finger
  
• 3cmf.pdb. oxidoreductase 21-mar-08 3cmf
  Title: crystal structure of human liver 5beta-reductase (akr1d1) in complex with nadp and cortisone. resolution 1.90 a.
  Author: l. di costanzo, j. drury, t. m. penning, d. w. christianson
  Keywords: cortisone, akr1d1, steroid, bile acid catabolism, cytoplasm, disease mutation, lipid metabolism, nadp, oxidoreductase, steroid metabolism
  
• 3cnl.pdb. signaling protein 26-mar-08 3cnl
  Title: crystal structure of gnp-bound ylqf from t. maritima
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gnp, signaling protein
  
• 3cnn.pdb. signaling protein 26-mar-08 3cnn
  Title: gtp-bound structure of tm ylqf
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gtp, signaling protein
  
• 3cno.pdb. signaling protein 26-mar-08 3cno
  Title: gdp-bound structue of tm ylqf
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gdp, signaling protein
  
• 3cob.pdb. motor protein 27-mar-08 3cob Mg
  Title: structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein
  Author: m. v. vinogradova, g. g. malanina, v. reddy, a. s. n. reddy, r. j. fletterick
  Keywords: motor, switch ii, loop l11, conformation, nucleotide, atp-binding, microtubule, motor protein, nucleotide-binding
  
• 3cot.pdb. oxidoreductase 29-mar-08 3cot
  Title: crystal structure of human liver delta(4)-3-ketosteroid 5beta-reductase (akr1d1) in complex with progesterone and nadp. resolution: 2.03 a.
  Author: l. di costanzo, j. drury, t. m. penning, d. w. christianson
  Keywords: 5beta reductase, e120, bile acid catabolism, cytoplasm, disease mutation, lipid metabolism, nadp, oxidoreductase, steroid metabolism
  
• 3cp2.pdb. oxidoreductase 30-mar-08 3cp2
  Title: crystal structure of gida from e. coli
  Author: a. scrima, s. meyer, w. versees, a. wittinghofer
  Keywords: nad, oxidoreductase, trna, cytoplasm, flavoprotein, trna processing
  
• 3cp8.pdb. oxidoreductase 31-mar-08 3cp8
  Title: crystal structure of gida from chlorobium tepidum
  Author: s. meyer, a. scrima, w. versees, a. wittinghofer
  Keywords: fad-binding domain, dinucleotide-binding motif, glutathione reductase, oxido-reductase, trna- modification, cytoplasm, flavoprotein, trna processing, oxidoreductase
  
• 3cr2.pdb. metal binding protein 04-apr-08 3cr2 Zn Ca
  Title: x-ray structure of bovine zn(2+),ca(2+)-s100b
  Author: t. h. charpentier
  Keywords: alpha helical, acetylation, calcium, cytoplasm, metal-binding, nucleus, zinc, metal binding protein
  
• 3cr5.pdb. metal binding protein 04-apr-08 3cr5 Zn Ca
  Title: x-ray structure of bovine pnt-zn(2+),ca(2+)-s100b
  Author: t. h. charpentier
  Keywords: alpha helical, acetylation, calcium, cytoplasm, metal-binding, nucleus, zinc, metal binding protein
  
• 3cs1.pdb. metal binding protein 08-apr-08 3cs1
  Title: flagellar calcium-binding protein (fcabp) from t. cruzi
  Author: j. b. ames, j. e. ladner, j. n. wingard, h. robinson, a. fisher
  Keywords: calcium-binding, myristoylated, palmitoylated, sensor, membrane targeting, ef-hand, cell projection, cilium, flagellum, metal binding protein
  
• 3cu0.pdb. transferase 15-apr-08 3cu0 Mn
  Title: human beta 1,3-glucuronyltransferase i (glcat-i) in complex with udp and gal-gal(6-so4)-xyl(2-po4)-o-ser
  Author: y. tone, l. c. pedersen, t. yamamoto, h. kitagawa, j. nishihara- shimizu, j. tamura, m. negishi, k. sugahara
  Keywords: glycosyltransferase, heparan sulfate biosynthesis, glycoprotein, golgi apparatus, manganese, membrane, metal- binding, signal-anchor, transmembrane
  
• 3cul.pdb. rna/rna binding 16-apr-08 3cul Mg K Se
  Title: aminoacyl-trna synthetase ribozyme
  Author: h. xiao, h. murakami, h. suga, a. r. ferre-d'amare
  Keywords: rna/rna binding complex
  
• 3cun.pdb. rna/rna binding 16-apr-08 3cun Co Mg K Se
  Title: aminoacyl-trna synthetase ribozyme
  Author: h. xiao, h. murakami, h. suga, a. r. ferre-d'amare
  Keywords: rna/rna binding complex
  
• 3cv0.pdb. transport protein 17-apr-08 3cv0
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei phosphoglucoisomerase (pgi) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cv5.pdb. hydrolase 17-apr-08 3cv5 Zn
  Title: golgi mannosidase ii d204a catalytic nucleophile mutant complex with 3alpha,6alpha-mannopentaose
  Author: n. shah, d. a. kuntz, d. r. rose
  Keywords: glycosidase, golgi apparatus, membrane, metal-binding, signal-anchor, transmembrane, zinc
  
• 3cvl.pdb. transport protein 18-apr-08 3cvl
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei phosphofructokinase (pfk) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvn.pdb. transport protein 18-apr-08 3cvn
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei glyceraldehyde-3-phosphate dehydrogenase (gapdh) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvp.pdb. transport protein 18-apr-08 3cvp
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to pts1 peptide (10-skl)
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvq.pdb. transport protein 18-apr-08 3cvq
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to pts1 peptide (7-skl)
  Author: p. sampathkumar, c. roach, p. a. m. michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3czn.pdb. hydrolase 29-apr-08 3czn Zn
  Title: golgi alpha-mannosidase ii (d204a nucleophile mutant) in complex with gnman5gn
  Author: n. shah, d. r. rose
  Keywords: glycosyl hydrolase, mannosidase, n-terminal alpha-beta domain, three helix bundle, 2 c-terminal beta barrels, glycosidase, golgi apparatus, membrane, metal- binding, signal-anchor, transmembrane, zin...
  
• 3czs.pdb. hydrolase 29-apr-08 3czs Zn
  Title: golgi alpha-mannosidase ii (d204a nucleophile mutant)
  Author: n. shah, d. r. rose
  Keywords: glycosyl hydrolase, mannosidase, n-terminal alpha-beta domain, three helix bundle, 2 c-terminal beta barrels
  
• 3d0q.pdb. transferase 02-may-08 3d0q Se
  Title: crystal structure of calg3 from micromonospora echinospora determined in space group i222
  Author: e. bitto, s. singh, c. a. bingman, g. e. wesenberg, g. n. phillips jr.
  Keywords: glycosyltransferase, enediyne antibiotic
  
• 3d0r.pdb. transferase 02-may-08 3d0r
  Title: crystal structure of calg3 from micromonospora echinospora determined in space group p2(1)
  Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr.
  Keywords: glycosyltransferase, enediyne antibiotic
  
• 3d1h.pdb. hydrolase 05-may-08 3d1h
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 500 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, hydrolase
  
• 3d1o.pdb. hydrolase 06-may-08 3d1o Cl
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 300 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, ionic strength, hydrolase
  
• 3d1q.pdb. hydrolase 06-may-08 3d1q Cl
  Title: structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 400 mm
  Author: r. j. gruninger, l. b. selinger, s. c. mosimann
  Keywords: protein tyrosine phosphatase, phytase, p-loop, ionic strength, hydrolase
  
• 3d35.pdb. transferase 09-may-08 3d35 Hg
  Title: crystal structure of rtt109-ac-coa complex
  Author: y. tang, r. marmorstein
  Keywords: histone acetyltransferase (hat), p300/cbp, histone h3 k56, genome stability, dna damage, dna repair, nucleus, transcription, transcription regulation
  
• 3d7v.pdb. apoptosis 22-may-08 3d7v Zn
  Title: crystal structure of mcl-1 in complex with an mcl-1 selective bh3 ligand
  Author: e. f. lee, p. e. czabotar, p. m. colman, w. d. fairlie
  Keywords: amphipathic helix, alternative splicing, apoptosis, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein, polymorphism, transmembrane, ubl conjugation
  
• 3d8k.pdb. hydrolase 23-may-08 3d8k Se
  Title: crsytal structure of a phosphatase from a toxoplasma gondii
  Author: l. damodharan, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3db2.pdb. structural genomics, unknown function 30-may-08 3db2 Se
  Title: crystal structure of putative nadph-dependent oxidoreductase (zp_01370612.1) from desulfitobacterium hafniense dcb-2 at 1.70 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative nadph-dependent oxidoreductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3dcz.pdb. structural genomics, unknown function 04-jun-08 3dcz Se
  Title: crystal structure of putative rnfg subunit of electron transport complex (tm0246) from thermotoga maritima at 1.65 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative rnfg subunit of electron transport complex, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3ddd.pdb. transferase 05-jun-08 3ddd Se
  Title: crystal structure of a putative acetyltransferase (np_142035.1) from pyrococcus horikoshii at 2.25 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: a putative acetyltransferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, acetyltransferase (gnat) family
  
• 3dde.pdb. structural genomics, unknown function 05-jun-08 3dde Se
  Title: crystal structure of domain of unknown function with a heme oxygenase-like fold (yp_564736.1) from shewanella denitrificans os-217 at 2.30 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: domain of unknown function with a heme oxygenase-like fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3ddj.pdb. structural genomics, unknown function 05-jun-08 3ddj Se
  Title: crystal structure of cbs domain-containing protein in complex with amp (np_344512.1) from sulfolobus solfataricus at 1.80 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: cbs domain-containing protein in complex with amp, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, cbs domain, cbs domain pair, unknown function
  
• 3ddm.pdb. lyase 05-jun-08 3ddm
  Title: crystal structure of mandelate racemase/muconate lactonizing enzyme from bordetella bronchiseptica rb50
  Author: a. a. fedorov, e. v. fedorov, r. toro, j. a. gerlt, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgxrc, target 9284b, enolase family, psi-2, protein structure initiative, new york structural genomix research consortium, lyase, new york sgx research center for structural genomics
  
• 3def.pdb. hydrolase 10-jun-08 3def Mg
  Title: crystal structure of toc33 from arabidopsis thaliana, dimerization deficient mutant r130a
  Author: p. koenig, e. schleiff, i. sinning, i. tews
  Keywords: toc33, gtpase, hydrolase
  
• 3deu.pdb. transcription regulator 10-jun-08 3deu
  Title: crystal structure of transcription regulatory protein slya from salmonella typhimurium in complex with salicylate ligands
  Author: i. le trong, p. s. brzovic, f. c. fang, s. j. libby, r. e. stenkamp
  Keywords: marr, salmonella, wing-helix, transcription regulator, activator, dna-binding, repressor, transcription regulation, virulence