Recent PDB releases or updates: week of 17 January 2003
- 1c08.pdb.
immune system/hydrolase 15-jul-99 1c08
Title: crystal structure of hyhel-10 fv-hen lysozyme complex
Author: m. shiroishi, h. kondo, m. matsushima, k. tsumoto, i. kumagai
- 1epv.pdb.
isomerase 29-mar-00 1epv
Title: alanine racemase with bound inhibitor derived from d- cycloserine
Author: g. f. stamper, d. ringe
- 1ftx.pdb.
isomerase 13-sep-00 1ftx
Title: crystal stucture of alanine racemase in complex with d- alanine phosphonate
Author: g. f. stamper, d. ringe
Keywords: d-alanine phosphonate
- 1ghe.pdb.
transferase 13-dec-00 1ghe
Se
Title: crystal structure of tabtoxin resistance protein complexed with an acyl coenzyme a
Author: h. he, y. ding, m. bartlam, f. sun, y. le, x. qin, h. tang, r. zhang, a. joachimiak, y. liu, n. zhao, z. rao
- 1giq.pdb.
toxin 12-mar-01 1giq
Title: crystal structure of the enzymatic componet of iota-toxin from clostridium perfringens with nadh
Author: h. tsuge, m. nagahama, h. nishimura, j. hisatsune, y. sakaguchi, y. itogawa, n. katunuma, j. sakurai
- 1gir.pdb.
toxin 12-mar-01 1gir
Title: crystal structure of the enzymatic componet of iota-toxin from clostridium perfringens with nadph
Author: h. tsuge, m. nagahama, h. nishimura, j. hisatsune, y. sakaguchi, y. itogawa, n. katunuma, j. sakurai
- 1gtf.pdb.
rna binding protein/rna 15-jan-02 1gtf
Title: the structure of the trp rna-binding attenuation protein (trap) bound to a 53-nucleotide rna molecule containing gaguu repeats
Author: n. h. hopcroft, a. l. wendt, p. gollnick, a. a. antson
Keywords: rna-binding protein, trp rna
- 1gu1.pdb.
lyase 22-jan-02 1gu1
Title: crystal structure of type ii dehydroquinase from streptomyces coelicolor complexed with 2,3-anydro-quinic acid
Author: a. w. roszak, d. a. robinson, t. krell, i. s. hunter, j. r. coggins, a. j. lapthorn
Keywords: type ii dehydroquinase, shikimate pathway, dodecameric quaternary structure, tetrahedral symmetry
- 1h1i.pdb.
oxidoreductase 15-jul-02 1h1i
Cu
Title: crystal structure of quercetin 2,3-dioxygenase anaerobically complexed with the substrate quercetn
Author: r. a. steiner, b. w. dijkstra
Keywords: dioxygenase, copper, flavonol
- 1h1m.pdb.
oxidoreductase 19-jul-02 1h1m
Cu
Title: crystal structure of quercetin 2,3-dioxygenase anaerobically complexed with the substrate kaempferol
Author: r. a. steiner, b. w. dijkstra
Keywords: dioxygenase, copper, flavonol
- 1hv2.pdb.
signaling protein 05-jan-01 1hv2
(NMR, 20 structures)
Title: solution structure of yeast elongin c in complex with a von hippel-lindau peptide
Author: m. v. botuyan, g. mer, g. -s. yi, c. m. koth, d. a. case, a. m. edwards, w. j. chazin, c. h. arrowsmith
- 1ioo.pdb.
hydrolase 26-mar-01 1ioo
Title: crystal structure of nicotiana alata gemetophytic self- incompatibility associated sf11-rnase
Author: k. ida, m. sato, f. sakiyama, s. norioka, m. yamamoto, t. kumasaka, e. yamashita
- 1ioq.pdb.
hydrolase 28-mar-01 1ioq
Title: stabilization of hen egg white lysozyme by a cavity-filling mutation
Author: t. ohmura, t. ueda, k. ootsuka, m. saito, t. imoto
Keywords: glycosidase, bacteriolytic enzyme
- 1ior.pdb.
hydrolase 28-mar-01 1ior
Title: stabilization of hen egg white lysozyme by a cavity-filling mutation
Author: t. ohmura, t. ueda, k. ootsuka, m. saito, t. imoto
Keywords: glycosidase, bacteriolytic enzyme
- 1ios.pdb.
hydrolase 28-mar-01 1ios
Title: stabilization of hen egg white lysozyme by a cavity-filling mutation
Author: t. ohmura, t. ueda, k. ootsuka, m. saito, t. imoto
Keywords: glycosidase, bacteriolytic enzyme
- 1iot.pdb.
hydrolase 28-mar-01 1iot
Title: stabilization of hen egg white lysozyme by a cavity-filling mutation
Author: t. ohmura, t. ueda, k. ootsuka, m. saito, t. imoto
Keywords: glycosidase, bacteriolytic enzyme
- 1iox.pdb.
hormone/growth factor 18-apr-01 1iox
(NMR, 40 structures)
Title: nmr structure of human betacellulin-2
Author: k. miura, h. doura, t. aizawa, h. tada, m. seno, h. yamada, k. kawano
- 1ioz.pdb.
signaling protein 18-apr-01 1ioz
Title: crystal structure of the c-ha-ras protein prepared by the cell-free synthesis
Author: t. kigawa, e. yamaguchi-nunokawa, k. kodama, t. matsuda, t. yabuki
Keywords: oncogene protein, gtp-binding protein, cell-free protein synthesis
- 1ip0.pdb.
hormone/growth factor 19-apr-01 1ip0
(NMR)
Title: nmr structure of human betacellulin-2
Author: k. miura, h. doura, t. aizawa, h. tada, m. seno, h. yamada, k. kawano
- 1ip1.pdb.
hydrolase 20-apr-01 1ip1
Na
Title: g37a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip2.pdb.
hydrolase 20-apr-01 1ip2
Na
Title: g48a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip3.pdb.
hydrolase 20-apr-01 1ip3
Na
Title: g68a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip4.pdb.
hydrolase 20-apr-01 1ip4
Na
Title: g72a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip5.pdb.
hydrolase 20-apr-01 1ip5
Na
Title: g105a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip6.pdb.
hydrolase 20-apr-01 1ip6
Na
Title: g127a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip7.pdb.
hydrolase 20-apr-01 1ip7
Na
Title: g129a human lysozyme
Author: k. takano, y. yamagata, k. yutani
Keywords: bacteriolytic enzyme
- 1ip9.pdb.
signaling protein 26-apr-01 1ip9
(NMR, 20 structures)
Title: solution structure of the pb1 domain of bem1p
Author: h. terasawa, y. noda, t. ito, h. hatanaka, s. ichikawa, k. ogura, h. sumimoto, f. inagaki
- 1ipa.pdb.
transferase 02-may-01 1ipa
Title: crystal structure of rna 2'-o ribose methyltransferase
Author: o. nureki, m. shirouzu, k. hashimoto, r. ishitani, t. terada, m. tamakoshi, t. oshima, m. chijimatsu, k. takio, d. g. vassylyev, t. shibata, y. inoue, s. kuramitsu, s. yokoyama
Keywords: rossmann fold, el30-like fold
- 1ipb.pdb.
rna binding protein 08-may-01 1ipb
Title: crystal structure of eukaryotic initiation factor 4e complexed with 7-methyl gpppa
Author: k. tomoo, x. shen, k. okabe, y. nozoe, s. fukuhara, s. morino, t. ishida, t. taniguchi, h. hasegawa, a. terashima, m. sasaki, y. katsuya, k. kitamura, h. miyoshi, m. ishikawa, k. miura
Keywords: protein biosynthesis
- 1ipc.pdb.
rna binding protein 08-may-01 1ipc
Title: crystal structure of eukaryotic initiation factor 4e complexed with 7-methyl gtp
Author: k. tomoo, x. shen, k. okabe, y. nozoe, s. fukuhara, s. morino, t. ishida, t. taniguchi, h. hasegawa, a. terashima, m. sasaki, y. katsuya, k. kitamura, h. miyoshi, m. ishikawa, k. miura
Keywords: protein biosynthesis
- 1ipg.pdb.
signaling protein 14-may-01 1ipg
(NMR)
Title: solution structure of the pb1 domain of bem1p
Author: h. terasawa, y. noda, t. ito, h. hatanaka, s. ichikawa, k. ogura, h. sumimoto, f. inagaki
- 1ipi.pdb.
hydrolase 15-may-01 1ipi
Title: crystal structure of the archaeal holliday junction resolvase hjc from pyrococcus furiosus form ii
Author: t. nishino, k. komori, y. ishino, k. morikawa
Keywords: hjc
- 1ipj.pdb.
sugar binding protein 16-may-01 1ipj
Title: crystal structures of recombinant and native soybean beta- conglycinin beta homotrimers complexes with n-acetyl-d- glucosamine
Author: n. maruyama, m. adachi, k. takahashi, k. yagasaki, m. kohno, y. takenaka, e. okuda, s. nakagawa, b. mikami, s. utsumi
Keywords: storage protein, vicilin
- 1ipk.pdb.
sugar binding protein 16-may-01 1ipk
Title: crystal structures of recombinant and native soybean beta- conglycinin beta homotrimers
Author: n. maruyama, m. adachi, k. takahashi, k. yagasaki, m. kohno, y. takenaka, e. okuda, s. nakagawa, b. mikami, s. utsumi
Keywords: storage protein, vicilin
- 1iq0.pdb.
ligase 24-may-01 1iq0
Title: thermus thermophilus arginyl-trna synthetase
Author: a. shimada, o. nureki, m. goto, s. takahashi, s. yokoyama
- 1iq1.pdb.
protein transport 28-may-01 1iq1
Title: crystal structure of the importin-alpha(44-54)-importin- alpha(70-529) complex
Author: b. catimel, t. teh, m. r. m. fontes, i. g. jennings, b. kobe
Keywords: solenoid, autoinhibition
- 1iq3.pdb.
endocytosis/exocytosis 06-jun-01 1iq3
Ca
(NMR, 18 structures)
Title: solution structure of the eps15 homology domain of a human pob1
Author: s. koshiba, t. kigawa, j. iwahara, a. kikuchi, s. yokoyama
Keywords: pob1 eh domain
- 1iq4.pdb.
rna binding protein 13-jun-01 1iq4
Title: 5s-rrna binding ribosomal protein l5 from bacillus stearothermophilus
Author: t. nakashima, m. yao, s. kawamura, k. iwasaki, m. kimura, i. tanaka
Keywords: rrna-binding, rnp motif
- 1iq5.pdb.
metal binding protein/protein binding 14-jun-01 1iq5
Ca
Title: calmodulin/nematode ca2+/calmodulin dependent kinase kinase fragment
Author: h. kurokawa, m. osawa, h. kurihara, n. katayama, h. tokumitsu, m. b. swindells, m. kainosho, m. ikura
Keywords: calmodulin, protein-peptide complex
- 1iq7.pdb.
metal transport 06-jul-01 1iq7
Title: ovotransferrin, c-terminal lobe, apo form
Author: k. mizutani, b. k. muralidhara, h. yamashita, s. tabata, b. mikami, m. hirose
Keywords: ovotransferrin, iron binding protein, transport protein
- 1iq8.pdb.
transferase 09-jul-01 1iq8
Mg Zn
Title: crystal structure of archaeosine trna-guanine transglycosylase from pyrococcus horikoshii
Author: r. ishitani, o. nureki, s. fukai, t. kijimoto, n. nameki, m. watanabe, h. kondo, m. sekine, n. okada, s. nishimura, s. yokoyama
- 1iqa.pdb.
cytokine 11-jul-01 1iqa
Se
Title: crystal structure of the extracellular domain of mouse rank ligand
Author: s. ito, k. wakabayashi, o. ubukata, s. hayashi, f. okada, t. hata
Keywords: beta-strand jellyroll, rankl, rank ligand, rank, cytokine, tnf, bone remodeling, osteoclast differentiation factor
- 1iqb.pdb.
sugar binding protein 15-jul-01 1iqb
Zn
Title: crystal structure of urtica dioica agglutinin isolectin i
Author: k. harata, w. d. schubert, m. muraki
Keywords: zinc complex, homo-dimer
- 1iqc.pdb.
oxidoreductase 20-jul-01 1iqc
Mg Fe Ca
Title: crystal structure of di-heme peroxidase from nitrosomonas europaea
Author: h. shimizu
Keywords: nitrosomonas europaea, proteobacteria, beta subdivision, ammonia-oxidizing bacteria
- 1iqd.pdb.
immune system/blood clotting 21-jul-01 1iqd
Title: human factor viii c2 domain complexed to human monoclonal bo2c11 fab.
Author: p. c. spiegel jr. , m. jacquemin, j. m. saint-remy, b. l. stoddard, k. p. pratt
Keywords: c2 domain, antibody, blood coagulation, inhibitor, bo2c11
- 1iqo.pdb.
metal binding protein 23-jul-01 1iqo
(NMR, 20 structures)
Title: solution structure of mth1880 from methanobacterium thermoautotrophicum
Author: c. h. lee, j. shin, e. bang, j. w. jung, a. yee, c. h. arrowsmith, w. lee
Keywords: anti-parallel, calcium binding, structural genomics
- 1iqp.pdb.
replication 24-jul-01 1iqp
Title: crystal structure of the clamp loader small subunit from pyrococcus furiosus
Author: t. oyama, y. ishino, i. k. o. cann, s. ishino, k. morikawa
Keywords: extended aaa-atpase domain, complex with adp
- 1iqq.pdb.
hydrolase 25-jul-01 1iqq
Title: crystal structure of japanese pear s3-rnase
Author: t. matsuura, h. sakai, s. norioka
Keywords: japanese pear, s-rnase, self- incompatibility, t2 family ribonuclease, hydrolase
- 1iqr.pdb.
lyase 27-jul-01 1iqr
Title: crystal structure of dna photolyase from thermus thermophilus
Author: h. komori, r. masui, s. kuramitsu, s. yokoyama, t. shibata, y. inoue, k. miki
Keywords: cyclobutane pyrimidine dimer (cpd), fad, photoreactivating enzyme, dna-binding
- 1iqs.pdb.
metal binding protein 29-jul-01 1iqs
(NMR, minimized average structure)
Title: minimized average structure of mth1880 from methanobacterium thermoautotrophicum
Author: c. h. lee, j. shin, e. bang, j. w. jung, a. yee, c. h. arrowsmith, w. lee
Keywords: anti-parallel
- 1iqu.pdb.
lyase 03-aug-01 1iqu
Title: crystal structure of photolyase-thymine complex
Author: h. komori, r. masui, s. kuramitsu, s. yokoyama, t. shibata, y. inoue, k. miki
Keywords: cyclobutane pyrimidine dimer (cpd), fad, photoreactivating enzyme, dna-binding
- 1iqv.pdb.
ribosome 07-aug-01 1iqv
Title: crystal structure analysis of the archaebacterial ribosomal protein s7
Author: h. hosaka, m. yao, m. kimura, i. tanaka
Keywords: rna-binding, decoding center, helix-turn- helix
- 1iqw.pdb.
immune system 10-aug-01 1iqw
Title: crystal structure of the fab fragment of the mouse anti- human fas antibody hfe7a
Author: s. ito, t. takayama, h. hanzawa, k. ichikawa, j. ohsumi, n. serizawa, t. hata, h haruyama
Keywords: fab, anti_fas, agonistic antibody, apoptosis
- 1iqz.pdb.
electron transport 30-aug-01 1iqz
Fe
Title: oxidized [4fe-4s] ferredoxin from bacillus thermoproteolyticus (form i)
Author: k. fukuyama, t. okada, y. kakuta, y. takahashi
Keywords: iron-sulfer protein, ultlahigh resolution analysis, geometry of [4fe-4s] cluster
- 1ir0.pdb.
electron transport 30-aug-01 1ir0
Fe
Title: oxidized [4fe-4s] ferredoxin from bacillus thermoproteolyticus (form ii)
Author: k. fukuyama, t. okada, y. kakuta, y. takahashi
Keywords: iron-sulfer protein, ultlahigh resolution analysis, geometry of [4fe-4s] cluster
- 1ir1.pdb.
lyase 31-aug-01 1ir1
Mg
Title: crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) complexed with co2, mg2+ and 2-carboxyarabinitol-1,5-bisphosphate
Author: e. mizohata, h. matsumura, y. okano, m. kumei, h. takuma, j. onodera, k. kato, n. shibata, t. inoue, a. yokota, y. kai
- 1ir2.pdb.
lyase 03-sep-01 1ir2
Mg
Title: crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from green alga, chlamydomonas reinhardtii complexed with 2- carboxyarabinitol-1,5-bisphosphate (2-cabp)
Author: e. mizohata, h. matsumura, y. okano, m. kumei, h. takuma, j. onodera, k. kato, n. shibata, t. inoue, a. yokota, y. kai
Keywords: 4-hydroxyproline, s-methylcysteine, alpha/beta barrel
- 1ir6.pdb.
hydrolase 11-sep-01 1ir6
Mn
Title: crystal structure of exonuclease recj bound to manganese
Author: a. yamagata, y. kakuta, r. masui, k. fukuyama
Keywords: dna repair, dna recombination, nuclease, single- stranded dna, two domains interconnected by alpha-helix
- 1ir7.pdb.
hydrolase 19-sep-01 1ir7
Title: im mutant of lysozyme
Author: t. ohmura, t. ueda, y. hashimoto, t. imoto
Keywords: egg white
- 1ir8.pdb.
hydrolase 19-sep-01 1ir8
Title: im mutant of lysozyme
Author: t. ohmura, t. ueda, y. hashimoto, t. imoto
Keywords: egg white
- 1ir9.pdb.
hydrolase 19-sep-01 1ir9
Title: im mutant of lysozyme
Author: t. ohmura, t. ueda, y. hashimoto, t. imoto
Keywords: egg white
- 1ird.pdb.
oxygen storage/transport 27-sep-01 1ird
Fe
Title: crystal structure of human carbonmonoxy-haemoglobin at 1.25 a resolution
Author: s. -y. park, j. r. h. tame
Keywords: structure, carbonmonoxy, haemoglobin
- 1irh.pdb.
protein binding 02-oct-01 1irh
(NMR, 20 structures)
Title: the solution structure of the third kunitz domain of tissue factor pathway inhibitor
Author: s. mine, t. yamazaki, t. miyata, s. hara, h. kato
Keywords: kunitz domain
- 1iri.pdb.
isomerase 08-oct-01 1iri
Title: crystal structure of human autocrine motility factor complexed with an inhibitor
Author: n. tanaka, a. haga, h. uemura, h. akiyama, t. funasaka, h. nagase, a. raz, k. t. nakamura
- 1irj.pdb.
metal binding protein 09-oct-01 1irj
Ca
Title: crystal structure of the mrp14 complexed with chaps
Author: h. itou, m. yao, n. watanabe, j. nishihira, i. tanaka
Keywords: mrp14, s100a9, ef-hand
- 1irm.pdb.
oxidoreductase 09-oct-01 1irm
Title: crystal structure of apo heme oxygenase-1
Author: m. sugishima, h. sakamoto, y. kakuta, y. omata, s. hayashi, m. noguchi, k. fukuyama
Keywords: apo form of hemoprotein
- 1irq.pdb.
gene regulation 11-oct-01 1irq
Title: crystal structure of omega transcriptional repressor at 1.5a resolution
Author: k. murayama, p. orth, a. b. de la hoz, j. c. alonso, w. saenger
Keywords: ribbon-helix-helix
- 1iru.pdb.
hydrolase 24-oct-01 1iru
Mg
Title: crystal structure of the mammalian 20s proteasome at 2.75 a resolution
Author: m. unno, t. mizushima, y. morimoto, y. tomisugi, k. tanaka, n. yasuoka, t. tsukihara
Keywords: cell cycle, immune response, proteolysis, ubiquitin
- 1irx.pdb.
ligase 25-oct-01 1irx
Zn
Title: crystal structure of class i lysyl-trna synthetase
Author: o. nureki, t. terada, r. ishitani, a. ambrogelly, m. ibba, d. soll, s. yokoyama
Keywords: zinc-binding structure, rossmann fold, alpha-helix cage
- 1is0.pdb.
transferase 02-nov-01 1is0
Title: crystal structure of a complex of the src sh2 domain with conformationally constrained peptide inhibitor
Author: j. p. davidson, o. lubman, t. rose, g. waksman, s. f. martin
- 1is2.pdb.
oxidoreductase 07-nov-01 1is2
Title: crystal structure of peroxisomal acyl-coa oxidase-ii from rat liver
Author: y. nakajima, i. miyahara, k. hirotsu
Keywords: fad
- 1izl.pdb.
photosynthesis 04-oct-02 1izl
Mg Mn Fe
Title: crystal structure of photosystem ii
Author: n. kamiya, j. -r. shen
Keywords: photosynthetic reaction center, core- antenna, thermophilic cyanobacterium, membrane protein complex, electron transfer, energy transfer
- 1j1o.pdb.
immune system/hydrolase 13-dec-02 1j1o
Title: crystal structure of hyhel-10 fv mutant ly50f complexed with hen egg white lysozyme
Author: a. yokota, k. tsumoto, m. shiroishi, h. kondo, i. kumagai
- 1j1p.pdb.
immune system/hydrolase 13-dec-02 1j1p
Title: crystal structure of hyhel-10 fv mutant ls91a complexed with hen egg white lysozyme
Author: a. yokota, k. tsumoto, m. shiroishi, h. kondo, i. kumagai
- 1j1x.pdb.
immune system/hydrolase 20-dec-02 1j1x
Title: crystal structure of hyhel-10 fv mutant ls93a complexed with hen egg white lysozyme
Author: a. yokota, k. tsumoto, m. shiroishi, h. kondo, i. kumagai
- 1j8b.pdb.
structural genomics, unknown function 21-may-01 1j8b
Se
Title: structure of ybab from haemophilus influenzae (hi0442), a protein of unknown function
Author: k. lim, a. tempcyzk, j. toedt, j. f. parsons, a. howard, e. eisenstein, o. herzberg
Keywords: hypothetical protein, structural genomics
- 1jqn.pdb.
lyase 07-aug-01 1jqn
Cl Mn
Title: crystal structure of e.coli phosphoenolpyruvate carboxylase in complex with mn2+ and dcdp
Author: h. matsumura, y. kai
Keywords: mn2+ and dcdp complex
- 1jqo.pdb.
lyase 07-aug-01 1jqo
Title: crystal structure of c4-form phosphoenolpyruvate carboxylase from maize
Author: h. matsumura, y. kai
Keywords: carbon dioxide fixation
- 1kr2.pdb.
transferase 08-jan-02 1kr2
Title: crystal structure of human nmn/namn adenylyl transferase complexed with tiazofurin adenine dinucleotide (tad)
Author: t. zhou, o. kurnasov, d. r. tomchick, d. d. binns, n. v. grishin, v. e. marquez, a. osterman, h. zhang
- 1kr3.pdb.
hydrolase 08-jan-02 1kr3
Zn Na
Title: crystal structure of the metallo beta-lactamase from bacteroides fragilis (cfia) in complex with the tricyclic inhibitor sb-236050.
Author: d. j. payne, j. a. hueso-rodrguez, h. boyd, n. o. concha, c. a. janson, m. gilpin, j. h. bateson, c. cheever, n. l. niconovich, s. pearson, s. rittenhouse, d. tew, e. dez, p. prez, j. de la fuente, m. rees, a. rivera-sagredo
Keywords: protein-inhibitor complex, metallo, beta- lactamase
- 1kr6.pdb.
hydrolase 09-jan-02 1kr6
Zn Ca
Title: thermolysin complexed with z-d-glutamic acid (benzyloxycarbonyl-d-glutamic acid)
Author: m. senda, t. senda, s. kidokoro
Keywords: metalloproteinase, benzyloxycarbonyl amino acid
- 1krm.pdb.
hydrolase 10-jan-02 1krm
Zn
Title: crystal structure of bovine adenosine deaminase complexed with 6-hydroxyl-1,6-dihydropurine riboside
Author: t. kinoshita
- 1kro.pdb.
hydrolase 10-jan-02 1kro
Zn Ca
Title: thermolysin complexed with z-d-threonine (benzyloxycarbonyl- d-threonine)
Author: m. senda, t. senda, s. kidokoro
Keywords: metalloproteinase, benzyloxycarbonyl amino acid
- 1ks7.pdb.
hydrolase 11-jan-02 1ks7
Zn Ca
Title: thermolysin complexed with z-d-aspartic acid (benzyloxycarbonyl-d-aspartic acid)
Author: m. senda, t. senda, s. kidokoro
Keywords: metalloproteinase, benzyloxycarbonyl amino acid
- 1lfu.pdb.
transcription 12-apr-02 1lfu
(NMR, 20 structures)
Title: nmr solution stucture of the extended pbx homeodomain bound to dna
Author: t. sprules, n. green, m. featherstone, k. gehring
- 1lpj.pdb.
transport protein 08-may-02 1lpj
Title: human crbp iv
Author: v. calderone, g. zanotti, r. berni, c. folli
Keywords: crbp, retinol, vitamin a, ilbps
- 1lq9.pdb.
oxidoreductase 09-may-02 1lq9
Title: crystal structure of a monooxygenase from the gene actva- orf6 of streptomyces coelicolor strain a3(2)
Author: g. sciara, s. g. kendrew, a. e. miele, n. g. marsh, l. federici, f. malatesta, g. schimperna, c. savino, b. vallone
Keywords: aromatic polyketides, actinorhodin, dihydrokalafungin, streptomyces coelicolor
- 1lr1.pdb.
dna binding protein 14-may-02 1lr1
(NMR, 20 structures)
Title: solution structure of the oligomerization domain of the bacterial chromatin-structuring protein h-ns
Author: d. esposito, a. petrovic, r. harris, s. ono, j. eccleston, a. mbabaali, i. haq, c. f. higgins, j. c. d. hinton, p. c. driscoll, j. e. ladbury
Keywords: coiled-coil, dna packaging, nucleoid assembly
- 1lxz.pdb.
plant protein 06-jun-02 1lxz
Title: structure of thaumatin crystallized in the presence of glycerol
Author: c. charron, a. kadri, m. c. robert, r. giege, b. lorber
Keywords: sweet protein
- 1ly0.pdb.
plant protein 06-jun-02 1ly0
Title: structure of thaumatin crystallized in the presence of glycerol
Author: c. charron, a. kadri, m. c. robert, r. giege, b. lorber
Keywords: sweet protein
- 1m06.pdb.
virus/viral protein/dna 12-jun-02 1m06
Title: structural studies of bacteriophage alpha3 assembly, x-ray crystallography
Author: r. a. bernal, s. hafenstein, n. h. olson, v. bowman, p. r. chipman, t. s. baker, b. a. fane, m. g. rossmann
Keywords: three-dimensional structure, virion, morphogenesis, phix174, assembly, microviridae
- 1m4l.pdb.
hydrolase 03-jul-02 1m4l
Zn
Title: structure of native carboxypeptidase a at 1.25 resolution
Author: a. kilshtain-vardi, m. glick, h. m. greenblatt, a. goldblum, g. shoham
Keywords: metalloproteinase, metalloexoproteinase
- 1m58.pdb.
hydrolase 09-jul-02 1m58
(NMR, 15 structures)
Title: solution structure of cytotoxic rc-rnase2
Author: c. -h. hsu, y. -d. liao, s. -h. wu, c. chen
Keywords: cytotoxicity, ribonuclease, nmr
- 1m6k.pdb.
hydrolase 16-jul-02 1m6k
Title: structure of the oxa-1 class d beta-lactamase
Author: t. sun, m. nukaga, k. mayama, e. h. braswell, j. r. knox
Keywords: lysine carbamylation, hydrolysis
- 1m7n.pdb.
transferase 22-jul-02 1m7n
Title: crystal structure of unactivated apo insulin-like growth factor-1 receptor kinase domain
Author: s. munshi, l. kuo
- 1me7.pdb.
oxidoreductase 08-aug-02 1me7
K Na
Title: inosine monophosphate dehydrogenase (impdh) from tritrichomonas foetus with rvp and moa bound
Author: g. l. prosise, j. wu, h. luecke
- 1me8.pdb.
oxidoreductase 08-aug-02 1me8
K Na
Title: inosine monophosphate dehydrogenase (impdh) from tritrichomonas foetus with rvp bound
Author: g. l. prosise, j. wu, h. luecke
- 1mhh.pdb.
immune system 20-aug-02 1mhh
Title: antibody-antigen complex
Author: m. graille, e. a. stura
Keywords: b cell superantigen, immunoglobulin binding protein
- 1mi6.pdb.
translation, ribosome 22-aug-02 1mi6
(cryo-electron microscopy)
Title: docking of the modified rf2 x-ray structure into the low resolution cryo-em map of rf2 e.coli 70s ribosome
Author: u. b. s. rawat, a. v. zavialov, j. sengupta, m. valle, r. a. grassucci, j. linde, b. vestergaard, m ehrenberg, j. frank
Keywords: release complex, conformational changes
- 1mky.pdb.
ligand binding protein 29-aug-02 1mky
Se
Title: structural analysis of the domain interactions in der, a switch protein containing two gtpase domains
Author: v. l. robinson, j. hwang, e. fox, m. inouye, a. m. stock
Keywords: enga, der, kh-domain, tandem g-domains
- 1ml5.pdb.
ribosome 30-aug-02 1ml5
(electron microscopy)
Title: structure of the e. coli ribosomal termination complex with release factor 2
Author: b. p. klaholz, t. pape, a. v. zavialov, a. g. myasnikov, e. v. orlova, b. vestergaard, m. ehrenberg, m. van heel
Keywords: ribosome, termination of protein synthesis, release factor, cryo-eletron microscopy, angular reconstitution
- 1mn8.pdb.
virus/viral protein 05-sep-02 1mn8
Title: structure of moloney murine leukaemia virus matrix protein
Author: n. riffel, k. harlos, o. iourin, z. rao, a. kingsman, d. stuart, e. fry
- 1mnx.pdb.
ribonucleic acid 06-sep-02 1mnx
(NMR, 13 structures)
Title: the solution structure of the loop e region of the 5s rrna from spinach chloroplasts.
Author: p. vallurupalli, p. b. moore
Keywords: 5s rrna
- 1mq8.pdb.
immune system 15-sep-02 1mq8
Mg
Title: crystal structure of alphal i domain in complex with icam-1
Author: m. shimaoka, t. xiao, j. -h. liu, y. yang, y. dong, c. -d. jun, a. mccormack, r. zhang, a. joachimiak, j. takagi, j. -h. wang, t. a. springer
Keywords: rossmann fold, metal mediated protein interface
- 1mq9.pdb.
immune system 15-sep-02 1mq9
Mn
Title: crystal structure of high affinity alphal i domain with ligand mimetic crystal contact
Author: m. shimaoka, t. xiao, j. -h. liu, y. yang, y. dong, c. -d. jun, a. mccormack, r. zhang, a. joachimiak, j. takagi, j. -h. wang, t. a. springer
Keywords: rossmann fold, metal mediated protein interface
- 1mqa.pdb.
immune system 15-sep-02 1mqa
Title: crystal structure of high affinity alphal i domain in the absence of ligand or metal
Author: t. shimaoka, t. xiao, j. -h. liu, y. yang, y. dong, c. -d. jun, r. zhang, j. takagi, j. -h. wang, t. a. springer
Keywords: rossmann fold
- 1mt4.pdb.
ribonucleic acid 20-sep-02 1mt4
(NMR, 17 structures)
Title: structure of 23s ribosomal rna hairpin 35
Author: i. lebars, s. yoshizawa, a. r. stenholm, e. guittet, s. douthwaite, d. fourmy
Keywords: ribosomal rna, u-turn
- 1myw.pdb.
luminescent protein 04-oct-02 1myw
Title: crystal structure of a yellow fluorescent protein with improved maturation and reduced environmental sensitivity
Author: a. rekas, j. r. alattia, t. nagai, a. miyawaki, m. ikura
Keywords: photoactive protein, green fluorescent protein, yellow-emission variant, improved maturation, beta-barrel, chromophore
- 1mza.pdb.
hydrolase 07-oct-02 1mza
Title: crystal structure of human pro-granzyme k
Author: c. hink-schauer, e. estebanez-perpina, e. wilharm, p. fuentes- prior, w. klinkert, w. bode, d. e. jenne
Keywords: apoptosis, serine protease, s1 family
- 1mzd.pdb.
hydrolase 07-oct-02 1mzd
Title: crystal structure of human pro-granzyme k
Author: c. hink-schauer, e. estebanez-perpina, e. wilharm, p. fuentes- prior, w. klinkert, w. bode, d. e. jenne
Keywords: apoptosis, serine protease, s1 family
- 1n3k.pdb.
apoptosis 28-oct-02 1n3k
(NMR, 20 structures)
Title: solution structure of phosphoprotein enriched in astrocytes 15 kda (pea-15)
Author: j. m. hill, h. vaidyanathan, j. w. ramos, m. h. ginsberg, m. h. werner
Keywords: six helix bundle
- 1n5q.pdb.
oxidoreductase 07-nov-02 1n5q
Title: crystal structure of a monooxygenase from the gene actva- orf6 of streptomyces coelicolor in complex with dehydrated sancycline
Author: g. sciara, s. g. kendrew, a. e. miele, n. g. marsh, l. federici, f. malatesta, g. schimperna, c. savino, b. vallone
Keywords: aromatic polyketides, actinorhodin, dihydrokalafungin, sancycline, streptomyces coelicolor
- 1n5s.pdb.
oxidoreductase 07-nov-02 1n5s
Title: crystal structure of a monooxygenase from the gene actva- orf6 of streptomyces coelicolor in complex with the ligand acetyl dithranol
Author: g. sciara, s. g. kendrew, a. e. miele, n. g. marsh, l. federici, f. malatesta, g. schimperna, c. savino, b. vallone
Keywords: aromatic polyketides, actinorhodin, dihydrokalafungin, acetyl dithranol, streptomyces coelicolor
- 1n5t.pdb.
oxidoreductase 07-nov-02 1n5t
Title: crystal structure of a monooxygenase from the gene actva- orf6 of streptomyces coelicolor in complex with the ligand oxidized acetyl dithranol
Author: g. sciara, s. g kendrew, a. e. miele, n. g. marsh, l. federici, f. malatesta, g. schimperna, c. savino, b. vallone
Keywords: aromatic polyketides, actinorhodin, dihydrokalafungin, oxidized acetyl dithranol, streptomyces coelicolor
- 1n5v.pdb.
oxidoreductase 07-nov-02 1n5v
Title: crystal structure of a monooxygenase from the gene actva- orf6 of streptomyces coelicolor in complex with the ligand nanaomycin d
Author: g. sciara, s. g. kendrew, a. e. miele, n. g. marsh, l. federici, f. malatesta, g. schimperna, c. savino, b. vallone
Keywords: aromatic polyketides, actinorhodin, dihydrokalafungin, nanaomycin d, streptomyces coelicolor
- 1n6q.pdb.
transferase/immune system/dna 11-nov-02 1n6q
Mg
Title: hiv-1 reverse transcriptase crosslinked to pre- translocation aztmp-terminated dna (complex n)
Author: s. g. sarafianos, a. d. clark jr. , k. das, s. tuske, j. j. birktoft, i. ilankumaran, a. r. ramesha, j. m. sayer, d. m. jerina, p. l. boyer, s. h. hughes, e. arnold
Keywords: hiv, nucleotide excision, reverse transcriptase, complex n, translocation, pre-translocation
- 1n91.pdb.
structural genomics/unknown function 21-nov-02 1n91
(NMR, 10 structures)
Title: solution structure of the hypothetical protein yggu from e. coli. northeast structural genomics consortium target er14.
Author: j. m. aramini, r. xiao, y. j. huang, t. b. acton, m. j. wu, j. l. mills, r. t. tejero, t. szyperski, g. t. montelione
- 1naa.pdb.
oxidoreductase 27-nov-02 1naa
Title: cellobiose dehydrogenase flavoprotein fragment in complex with cellobionolactam
Author: b. m. hallberg, g. henriksson, g. pettersson, a. vasella, c. divne
Keywords: alpha/beta structure, rossman fold, phbh fold, product analogue complex, 6-hydroxylated fad
- 1nbw.pdb.
hydrolase 04-dec-02 1nbw
Ca
Title: glycerol dehydratase reactivase
Author: d. -i. liao, l. reiss, i. turner jr. , g. dotson
Keywords: reactivase, molecular chaperone, actin-like atpase domain, beta/beta/alpha swiveling domain
- 1ne8.pdb.
structural genomics, unknown function 10-dec-02 1ne8
Title: ydce protein from bacillus subtilis
Author: a. gogos, h. mu, l. shapiro
Keywords: structural genomics, new york structural genomics research consortium
- 1neg.pdb.
structural protein 11-dec-02 1neg
Title: crystal structure analysis of n-and c-terminal labeled sh3- domain of alpha-chicken spectrin
Author: u. mueller, k. buessow, a. diehl, f. niesen, l. nyarsik, u. heinemann
Keywords: five antiparallel beta sheets
- 1ney.pdb.
isomerase 12-dec-02 1ney
F
Title: triosephosphate isomerase in complex with dhap
Author: g. jogl, s. rozovsky, a. e. mcdermott, l. tong
Keywords: triosephosphate isomerase, dhap, dihydroxyacetone phosphate, michaelis complex
- 1nf0.pdb.
isomerase 12-dec-02 1nf0
F
Title: triosephosphate isomerase in complex with dhap
Author: g. jogl, s. rozovsky, a. e. mcdermott, l. tong
Keywords: triosephosphate isomerase, dhap, dihydroxyacetone phosphate, michaelis complex
- 1nhy.pdb.
translation 20-dec-02 1nhy
Se
Title: crystal structure of the gst-like domain of elongation factor 1-gamma from saccharomyces cerevisiae.
Author: m. g. jeppesen, p. ortiz, t. g. kinzy, g. a. andersen, j. nyborg
Keywords: gst-like
- 1nix.pdb.
toxin 29-dec-02 1nix
(NMR, 20 structures)
Title: three dimensional solution structure of hainantoxin-i by 2d 1h-nmr
Author: d. l. li, s. p. liang
- 1niy.pdb.
toxin 30-dec-02 1niy
(NMR, 20 structures)
Title: three dimensional solution structure of hainantoxin-iv by 2d 1h-nmr
Author: d. l. li, s. y. lu, x. c. gu, s. p. liang
Keywords: inhibitor cystine knot motif
- 1nkh.pdb.
transferase activator/transferase 03-jan-03 1nkh
Mn Ca
Title: crystal structure of lactose synthase complex with udp and manganese
Author: b. ramakrishnan, p. k. qasba
Keywords: udp and mn binding
- 1nl6.pdb.
hydrolase 06-jan-03 1nl6
Title: crystal structure of the cysteine protease human cathepsin k in complex with a covalent azepanone inhibitor
Author: w. w. smith, c. a. janson, b. zhao
Keywords: sulfhydryl proteinase
- 1nlj.pdb.
hydrolase 07-jan-03 1nlj
Title: crystal structure of the cysteine protease human cathepsin k in complex with a covalent azepanone inhibitor
Author: w. w. smith, c. a. janson, b. zhao
Keywords: sulfhydryl proteinase
- 1o9l.pdb.
transferase 17-dec-02 1o9l
Hg
Title: succinate:coenzyme-a transferase (pig heart)
Author: e. p. mitchell, a. j. lloyd, g. lewis, p. shoolingin-jordan
Keywords: transferase, mad, pathogenic mutations
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Metalloprotein Structure and Design project home page:
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Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS