Recent PDB releases or updates: week of 9 May 2008
- 1geq.pdb.
lyase 21-nov-00 1geq
Title: entropic stabilization of the tryptophan synthase a-subunit from a hyperthermophile, pyrococcus furiosus: x-ray analysis and calorimetry
Author: k. yutani, y. yamagata
Keywords: hyperthermophile, pyrococcus furiosus, x-ray analysis, stability, calorimetry, lyase
- 1h9h.pdb.
hydrolase inhibitor 12-mar-01 1h9h
Ca
Title: complex of eeti-ii with porcine trypsin
Author: r. kraetzner, a. wentzel, h. kolmar, i. uson
Keywords: complex (serine protease/inhibitor), trypsin, squash inhibitor, cystine knot, hydrolase
- 1hr6.pdb.
hydrolase 21-dec-00 1hr6
Zn
Title: yeast mitochondrial processing peptidase
Author: a. b. taylor, b. s. smith, s. kitada, k. kojima, h. miyaura, z. otwinowski, a. ito, j. deisenhofer
Keywords: hydrolase
- 1hr7.pdb.
hydrolase 21-dec-00 1hr7
Zn
Title: yeast mitochondrial processing peptidase beta-e73q mutant
Author: a. b. taylor, b. s. smith, s. kitada, k. kojima, h. miyaura, z. otwinowski, a. ito, j. deisenhofer
Keywords: hydrolase
- 1hr8.pdb.
hydrolase 21-dec-00 1hr8
Zn
Title: yeast mitochondrial processing peptidase beta-e73q mutant complexed with cytochrome c oxidase iv signal peptide
Author: a. b. taylor, b. s. smith, s. kitada, k. kojima, h. miyaura, z. otwinowski, a. ito, j. deisenhofer
Keywords: hydrolase
- 1hr9.pdb.
hydrolase 21-dec-00 1hr9
Zn
Title: yeast mitochondrial processing peptidase beta-e73q mutant complexed with malate dehydrogenase signal peptide
Author: a. b. taylor, b. s. smith, s. kitada, k. kojima, h. miyaura, z. otwinowski, a. ito, j. deisenhofer
Keywords: hydrolase
- 1hyg.pdb.
oxidoreductase 19-jan-01 1hyg
Title: crystal structure of mj0490 gene product, the family of lactate/malate dehydrogenase
Author: b. i. lee, c. chang, s. -j. cho, s. w. suh
Keywords: oxidoreductase
- 1jrl.pdb.
hydrolase 14-aug-01 1jrl
Title: crystal structure of e. coli lysophospholiase l1/acyl-coa thioesterase i/protease i l109p mutant
Author: y. -c. lo, s. -c. lin, j. -f. shaw, y. -c. liaw
Keywords: protease
- 1k62.pdb.
lyase 14-oct-01 1k62
Title: crystal structure of the human argininosuccinate lyase q286r mutant
Author: l. m. sampaleanu, f. vallee, g. d. thompson, p. l. howell
Keywords: arginiosuccinate lyase, delta crystallin, enzyme mechanism
- 1u8u.pdb.
hydrolase 07-aug-04 1u8u
Title: e. coli thioesterase i/protease i/lysophospholiase l1 in complexed with octanoic acid
Author: y. -c. lo, s. -c. lin, y. -c. liaw
Keywords: protease
- 1v2g.pdb.
hydrolase 15-oct-03 1v2g
Title: the l109p mutant of e. coli thioesterase i/protease i/lysophospholipase l1 (tap) in complexed with octanoic acid
Author: y. -c. lo, s. -c. lin, y. -c. liaw
- 1vsq.pdb.
transferase 10-jan-08 1vsq
He Hg
(NMR, 2 structures)
Title: solution nmr structure of the productive complex between iiamannose and iibmannose of the mannose transporter of the e. coli phosphotransferase system
Author: g. m. clore, j. hu, k. hu
Keywords: sugar transport, transferase, complex (transferase/phosphocarrier, cytoplasm, membrane, phosphoprotein, phosphotransferase system
- 1yt8.pdb.
transferase 10-feb-05 1yt8
Se
Title: crystal structure of thiosulfate sulfurtransferase from pseudomonas aeruginosa
Author: d. kumaran, s. swaminathan, s. k. burley, new york structural genomix research consortium (nysgxrc)
Keywords: rhodanase domains, cyanide detoxification, structural genomics, psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2b4z.pdb.
electron transport 27-sep-05 2b4z
Fe
Title: crystal structure of cytochrome c from bovine heart at 1.5 a resolution.
Author: n. mirkin, j. jakoncic, v. stojanoff, a. moreno
Keywords: low ionic strength, electron transport
- 2b5o.pdb.
oxidoreductase 29-sep-05 2b5o
Title: ferredoxin-nadp reductase
Author: m. r. sawaya, c. a. kerfeld, c. gomez-lojero, d. krogmann, d. a. bryant, t. o. yeates
Keywords: oxidoreductase
- 2b7o.pdb.
transferase 05-oct-05 2b7o
Mn Se
Title: the structure of 3-deoxy-d-arabino-heptulosonate 7- phosphate synthase from mycobacterium tuberculosis
Author: c. j. webby, h. m. baker, j. s. lott, e. n. baker, e. j. parker, mycobacterium tuberculosis structural proteomics project (xmtb)
Keywords: dah7ps synthase, shikimate pathway, aromatic biosynthesis, evolutionary relationships, structural genomics, mycobacterium tuberculosis structural proteomics project, xmtb, transferase
- 2bgq.pdb.
oxidoreductase 04-jan-05 2bgq
Title: apo aldose reductase from barley
Author: j. g. olsen, l. pedersen, c. l. christensen, o. olsen, a. henriksen
Keywords: apoenzyme, aldo/keto reductase oxidoreductase
- 2bgs.pdb.
oxidoreductase 05-jan-05 2bgs
Title: holo aldose reductase from barley
Author: j. g. olsen, l. pedersen, c. l. christensen, o. olsen, a. henriksen
Keywords: holoenzyme, aldo/keto reductase, oxidoreductase
- 2die.pdb.
hydrolase 29-mar-06 2die
Na Ca
Title: alkaline alpha-amylase amyk from bacillus sp. ksm-1378
Author: t. shirai, k. igarashi, t. ozawa, h. hagihara, t. kobayashi, k. ozaki, s. ito
Keywords: hydrolase
- 2dqs.pdb.
hydrolase 29-may-06 2dqs
Mg Na
Title: crystal structure of the calcium pump with amppcp in the absence of calcium
Author: c. toyoshima, y. norimatsu, j. tsueda
Keywords: p-type atpase, amppcp, hydrolase
- 2dwo.pdb.
transferase, hydrolase 16-aug-06 2dwo
Title: pfkfb3 in complex with adp and pep
Author: y. h. lee
Keywords: transferase, hydrolase
- 2dwp.pdb.
transferase, hydrolase 16-aug-06 2dwp
Mg
Title: a pseudo substrate complex of 6-phosphofructo-2-kinase of pfkfb
Author: y. h. lee
Keywords: amppcp, fructose-6-phosphate, transferase, hydrolase
- 2e2s.pdb.
toxin 17-nov-06 2e2s
Hg
(NMR, 20 structures)
Title: solution structure of agelenin, an insecticidal peptide from the venom of agelena opulenta
Author: n. yamaji
Keywords: presynaptic calcium channel inhibitor, toxin
- 2e3w.pdb.
hydrolase 30-nov-06 2e3w
Cl
Title: x-ray structure of native rnase a
Author: d. j. boerema, v. a. tereshko, s. b. h. kent
Keywords: beta-sheet, hydrolase
- 2f7l.pdb.
isomerase 01-dec-05 2f7l
Title: crystal structure of sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Author: t. kawamura, n. sakai, j. akutsu, z. zhang, n. watanabe, y. kawarabayashi, i. tanaka
Keywords: phosphoglucomutase, isomerase
- 2fsv.pdb.
oxidoreductase 23-jan-06 2fsv
Title: structure of transhydrogenase (di.d135n.nad+) 2(diii.e155w.nadp+)1 asymmetric complex
Author: t. h. brondijk, g. i. van boxel, o. c. mather, p. g. quirk, s. a. white, j. b. jackson
Keywords: nad+, nadp+, oxidoreductase
- 2gez.pdb.
hydrolase 21-mar-06 2gez
Cl Na
Title: crystal structure of potassium-independent plant asparaginase
Author: k. michalska, g. bujacz, m. jaskolski
Keywords: l-asparaginase, ntn-hydrolase, autoproteolysis, taspase, sodium binding
- 2h6u.pdb.
hydrolase 01-jun-06 2h6u
Title: crystal structure of 5-hydroxyisourate hydrolase (formerly known as trp, transthyretin related protein)
Author: g. zanotti, l. cendron, c. folli, i. ramazzina, r. percudani, r. berni
Keywords: trp, uric acid degradation, allantoin
- 2hm7.pdb.
hydrolase 11-jul-06 2hm7
Title: crystal structure analysis of the g84s est2 mutant
Author: v. menchise, v. alterio, g. de simone
Keywords: x-ray diffraction
- 2i1v.pdb.
transferase, hydrolase 15-aug-06 2i1v
Title: crystal structure of pfkfb3 in complex with adp and fructose-2,6-bisphosphate
Author: s. g. kim, m. r. el-maghrabi, y. h. lee
Keywords: adp and f-2,6-p2 in 2-kase, e-p and f-6-p in 2-pase, transferase, hydrolase
- 2itu.pdb.
transferase 25-may-06 2itu
Title: crystal structure of egfr kinase domain l858r mutation in complex with afn941
Author: c. -h. yun, t. j. boggon, y. li, s. woo, h. greulich, m. meyerson, m. j. eck
Keywords: staurosporine, membrane tyrosine-protein kinase, epidermal growth factor
- 2j9b.pdb.
electron transport 06-nov-06 2j9b
Fe
Title: the crystal structure of cytochrome c' from rubrivivax gelatinosus at 1.5 a resolution and ph 6.3
Author: s. benini, s. ciurli, w. r. rypniewski, k. s. wilson
Keywords: iron, transport, cytochrome, metal-binding, electron transfer, electron transport, rubrivivax gelatinosus
- 2jcp.pdb.
sugar-binding protein 03-jan-07 2jcp
Title: the hyaluronan binding domain of murine cd44
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: pyrrolidone carboxylic acid, transmembrane, sugar- binding, phosphorylation
- 2jcq.pdb.
sugar-binding protein 03-jan-07 2jcq
He Hg
Title: the hyaluronan binding domain of murine cd44 in a type a complex with an ha 8-mer
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: extracellular matrix, pyrrolidone carboxylic acid, transmembrane, sugar- binding, phosphorylation
- 2jcr.pdb.
sugar-binding protein 03-jan-07 2jcr
Title: the hyaluronan binding domain of murine cd44 in a type b complex with an ha 8-mer
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: pyrrolidone carboxylic acid, transmembrane, sugar-binding, phosphorylation
- 2jj6.pdb.
sugar-binding protein 18-mar-08 2jj6
Title: crystal structure of the putative carbohydrate recognition domain of the human galectin-related protein
Author: s. thore, m. a. walti, m. kunzler, m. aebi
Keywords: galectin, carbohydrate recognition domain sugar-binding protein
- 2jj8.pdb.
transferase 19-mar-08 2jj8
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2jqc.pdb.
toxin 31-may-07 2jqc
Hg
(NMR, 20 structures)
Title: a l-amino acid mutant of a d-amino acid containing conopeptide
Author: f. huang, w. du, y. han, c. wang, c. chi
Keywords: mr12, nmr solution structure
- 2jr2.pdb.
structural genomics, unknown function 19-jun-07 2jr2
He Hg
(NMR, 20 structures)
Title: solution nmr structure of homodimer cps_2611 from colwellia psychrerythraea. northeast structural genomics consortium target csr4.
Author: t. a. ramelot, j. r. cort, h. wang, c. nwosu, k. cunningham, l. owens, l- c. ma, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: all alpha helix, homodimer, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jr5.pdb.
structural genomics, unknown function 20-jun-07 2jr5
He Hg
(NMR, 20 structures)
Title: solution structure of upf0350 protein vc_2471. northeast structural genomics target vcr36
Author: y. wu, d. parish, k. k. singarapu, d. sukumaran, a. eletski, r. shastry, c. nwosu, m. maglaqui, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: nmr, upf0350 protein vc_2471, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jr6.pdb.
structural genomics, unknown function 20-jun-07 2jr6
He Hg
(NMR, 20 structures)
Title: solution structure of upf0434 protein nma0874. northeast structural genomics target mr32
Author: a. ghosh, k. k. singarapu, y. wu, g. liu, d. sukumaran, c. x. chen, c. nwosu, l. owens, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: nmr, upf0434 protein nma0874, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrf.pdb.
structural genomics, unknown function 25-jun-07 2jrf
He Hg
(NMR, 20 structures)
Title: solution nmr structure of tubulin polymerization-promoting protein family member 3 from homo sapiens. northeast structural genomics target hr387.
Author: j. m. aramini, p. rossi, r. shastry, c. nwosu, k. cunningham, r. xiao, j. liu, m. c. baran, p. k. rajan, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrj.pdb.
ligase 27-jun-07 2jrj
He Hg Zn
(NMR, 20 structures)
Title: solution structure of the human pirh2 ring-h2 domain. northeast structural genomics consortium target ht2b
Author: y. sheng, a. lemak, r. laister, b. wu, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: ring domain, structural genomics, protein structure initiative, psi-2, northeast structural genomics consortium, nesg
- 2jrm.pdb.
structural genomics, unknown function 27-jun-07 2jrm
He Hg
(NMR, 20 structures)
Title: solution nmr structure of ribosome modulation factor vp1593 from vibrio parahaemolyticus. northeast structural genomics target vpr55
Author: y. tang, p. rossi, g. swapna, h. wang, m. jiang, k. cunningham, l. owens, l. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrn.pdb.
structural genomics, unknown function 27-jun-07 2jrn
He Hg
(NMR, 20 structures)
Title: nmr solution structure of staphylococcus saprophyticus chap (cysteine, histidine-dependent amidohydrolases/peptidases) domain protein. northeast structural genomics target syr11
Author: p. rossi, j. m. aramini, c. x. chen, c. nwosu, k. cunningham, l. owens, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: monomer, chap domain, putative amidase, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jro.pdb.
structural genomics, unknown function 28-jun-07 2jro
He Hg
(NMR, 20 structures)
Title: solution nmr structure of so0334 from shewanella oneidensis. northeast structural genomics target sor75
Author: y. tang, d. wang, c. nwosu, k. cunningham, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrp.pdb.
structural genomics, unknown function 28-jun-07 2jrp
He Hg Zn
(NMR, 20 structures)
Title: solution nmr structure of yfgj from salmonella typhimurium modeled with two zn+2 bound, northeast structural genomics consortium target str86
Author: k. ding, t. a. ramelot, j. r. cort, h. wang, c. nwosu, k. cunningham, l. owens, l. ma, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrr.pdb.
structural genomics, unknown function 28-jun-07 2jrr
He Hg
(NMR, 20 structures)
Title: solution nmr structure of q5lls5 from silicibacter pomeroyi. northeast structural genomics consortium target sir90
Author: g. v. t. swapna, r. tejero, m. jiang, k. cunningham, m. maglaqui, l. owens, j. liu, h. wang, t. b. acton, r. xiao, m. c. baran, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: protein, sir90, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2jrs.pdb.
rna binding protein 28-jun-07 2jrs
He Hg
(NMR, 20 structures)
Title: solution nmr structure of caper rrm2 domain. northeast structural genomics target hr4730a
Author: p. rossi, l. zhao, c. nwosu, k. cunningham, l. owens, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: rrm2 domain, solution nmr structure, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, rna binding protein
- 2jrt.pdb.
structural genomics, unknown function 28-jun-07 2jrt
He Hg
(NMR, 20 structures)
Title: nmr solution structure of the protein coded by gene rhos4_12090 of rhodobacter sphaeroides. northeast structural genomics target rhr5
Author: l. wang, c. chen, c. nwosu, k. cunningham, l. owens, l. ma, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: structure, nesg, psi, target rhr5, rhodobacter sphaeroides, structural genomics, protein structure initiative, northeast structural genomics consortium, structural genomics, unknown function
- 2js0.pdb.
signaling protein 29-jun-07 2js0
He Hg
(NMR, 20 structures)
Title: solution structure of second sh3 domain of adaptor nck
Author: m. j. hake, k. choowongkomon, c. r. carlin, f. d. sonnichsen
Keywords: adaptor, signaling, signaling protein
- 2js2.pdb.
signaling protein 29-jun-07 2js2
He Hg
(NMR, 20 structures)
Title: solution structure of first sh3 domain of adaptor nck
Author: m. j. hake, k. choowongkomon, c. r. carlin, f. d. sonnichsen
Keywords: adaptor, signaling, signaling protein
- 2js3.pdb.
structural genomics, unknown function 29-jun-07 2js3
He Hg
(NMR, 20 structures)
Title: nmr structure of protein q6n9a4_rhopa. northeast structural genomics consortium target rpt8
Author: k. k. singarapu, y. wu, a. yee, a. eletsky, d. sukumaran, m. garcia, r. xiao, s. bansal, m. c. baran, g. t. montelione, p. h. james, c. h. arrowsmith, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: protein structure, nmr spectroscopy, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2js5.pdb.
structural genomics, unknown function 29-jun-07 2js5
He Hg
(NMR, 20 structures)
Title: nmr structure of protein q60c73_metca. northeast structural genomics consortium target mcr1
Author: k. k. singarapu, y. wu, a. eletsky, d. sukumaran, d. parish, c. x. chen, c. nwosu, m. maglaqui, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: protein structure, nmr spectroscopy, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics, unknown function
- 2ju0.pdb.
metal binding protein/signaling protein 11-aug-07 2ju0
He Hg Ca
(NMR, 15 structures)
Title: structure of yeast frequenin bound to pdtins 4-kinase
Author: j. ames
Keywords: calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus, phosphorylation, transferase, metal binding protein/signaling protein complex
- 2jzh.pdb.
transferase 08-jan-08 2jzh
He Hg
(NMR, minimized average structure)
Title: structure of iib domain of the mannose transporter of e. coli
Author: m. komlosh, d. c. williams jr.
Keywords: iib domain, iibman phosphotransferase enzyme ii, b component, cytoplasm, membrane, phosphoprotein, phosphotransferase system, sugar transport, transport
- 2jzn.pdb.
transferase 10-jan-08 2jzn
He Hg
(NMR, minimized average structure)
Title: solution nmr structure of the productive complex between iiamannose and iibmannose of the mannose transporter of the e. coli phosphotransferase system
Author: g. m. clore, j. hu, k. hu
Keywords: sugar transport, transferase, complex (transferase/phosphocarrier, cytoplasm, membrane, phosphoprotein, phosphotransferase system
- 2jzo.pdb.
transferase 10-jan-08 2jzo
He Hg
(NMR, minimized average structure)
Title: solution nmr structure of the non-productive complex between iiamannose and iibmannose of the mannose transporter of the e. coli phosphotransferase system
Author: g. clore, j. hu, k. hu
Keywords: sugar transport, transferase, complex transferase/phosphocarrier, cytoplasm, membrane, phosphoprotein, phosphotransferase system
- 2nui.pdb.
hydrolase 09-nov-06 2nui
Cl
Title: x-ray structure of synthetic [d83a]rnase a
Author: d. j. boerema, v. a. tereshko, s. b. h. kent
Keywords: hydrolase
- 2odj.pdb.
membrane protein 22-dec-06 2odj
Se
Title: crystal structure of the outer membrane protein oprd from pseudomonas aeruginosa
Author: s. biswas, b. van den berg
Keywords: beta-barrel, amino acid transport
- 2oxj.pdb.
unknown function 20-feb-07 2oxj
He Hg
Title: helix bundle quaternary structure from alpha/beta-peptide foldamers: gcn4-p1 with beta-residues at b and f heptad positions.
Author: w. s. horne, j. l. price, j. l. keck, s. h. gellman
Keywords: foldamer, coiled coil, unknown function
- 2oxk.pdb.
unknown function 20-feb-07 2oxk
He Hg
Title: helix bundle quaternary structure from alpha/beta-peptide foldamers: gcn4-pli with beta-residues at b and f heptad positions.
Author: w. s. horne, j. l. price, j. l. keck, s. h. gellman
Keywords: foldamer, coiled coil, unknown function
- 2ozn.pdb.
toxin 26-feb-07 2ozn
Cl Ca
Title: the cohesin-dockerin complex of nagj and nagh from clostridium perfringens
Author: j. j. adams, a. boraston, s. p. smith
Keywords: toxin
- 2paq.pdb.
hydrolase 27-mar-07 2paq
Se
Title: crystal structure of the 5'-deoxynucleotidase yfbr
Author: m. d. zimmerman, m. chruszcz, m. cymborowski, m. kudritska, w. minor, midwest center for structural genomics (mcsg)
Keywords: 5'-deoxynucleotidase, yfbr, hd domain phosphohydrolase, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2par.pdb.
hydrolase 27-mar-07 2par
Co
Title: crystal structure of the 5'-deoxynucleotidase yfbr mutant e72a complexed with co(2+) and tmp
Author: m. d. zimmerman, m. proudfoot, a. yakunin, w. minor
Keywords: 5'-deoxynucleotidase, yfbr, hd domain phosphohydrolase
- 2pau.pdb.
hydrolase 27-mar-07 2pau
Co
Title: crystal structure of the 5'-deoxynucleotidase yfbr mutant e72a complexed with co(2+) and damp
Author: m. d. zimmerman, m. proudfoot, a. yakunin, w. minor
Keywords: 5'-deoxynucleotidase, yfbr, hd domain phosphohydrolase
- 2pc2.pdb.
hydrolase 29-mar-07 2pc2
Cl Eu
Title: lysozyme cocrystallized with tris-dipicolinate eu complex
Author: g. pompidor, j. vicat, r. kahn
- 2po8.pdb.
plant protein 26-apr-07 2po8
Hg
(NMR, 20 structures)
Title: the structure of a two-disulfide intermediate of mcoti-ii
Author: m. cemazar, a. joshi, a. e. mark, d. j. craik, n. l. daly
Keywords: plant protein
- 2ppy.pdb.
lyase 01-may-07 2ppy
Se
Title: crystal structure of enoyl-coa hydrates (gk_1992) from geobacillus kaustophilus hta426
Author: s. p. kanaujia, j. jeyakanthan, m. kavyashree, k. sekar, a. ebihara, s. kuramitsu, a. shinkai, y. shiro, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2pq0.pdb.
structural genomics, unknown function 01-may-07 2pq0
Se
Title: crystal structure of hyopthetical protein (gk_1056) from geobacillus kaustophilus hta426
Author: s. p. kanaujia, j. jeyakanthan, m. kavyashree, k. sekar, y. agari, a. ebihara, s. kuramitsu, a. shinkai, y. shiro, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, unknown function, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2pq1.pdb.
hydrolase 01-may-07 2pq1
Title: crystal structure of ap4a hydrolase complexed with amp and atp (aq_158) from aquifex aeolicus vf5
Author: s. p. kanaujia, n. nakagawa, j. jeyakanthan, m. kavyashree, k. sekar, a. ebihara, s. kuramitsu, a. shinkai, y. shiro, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: diadenosine polyphosphate, ap4a, hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2pxg.pdb.
membrane protein 14-may-07 2pxg
He Hg
(NMR, 20 structures)
Title: nmr solution structure of omla
Author: m. m. t. vanini, t. a. pertinhez, m. l. sforca, a. spisni, c. e. benedetti
Keywords: two layer sandwich architecture, membrane protein
- 2q17.pdb.
unknown function 23-may-07 2q17
Ca
Title: formylglycine generating enzyme from streptomyces coelicolor
Author: b. l. carlson, e. r. ballister, e. skordalakes, d. s. king, m. a. breidenbach, s. a. gilmore, j. m. berger, c. r. bertozzi
Keywords: formylglycine, sulfatase, unknown function
- 2q1x.pdb.
cell cycle, signaling protein 25-may-07 2q1x
Title: crystal structure of cell division protein ftsz from mycobacterium tuberculosis in complex with citrate.
Author: j. j. truglio
Keywords: cell division, protein, tuberculosis, cell cycle, signaling protein
- 2q1y.pdb.
cell cycle, signaling protein 25-may-07 2q1y
Title: crystal structure of cell division protein ftsz from mycobacterium tuberculosis in complex with gtp-gamma-s
Author: j. j. truglio
Keywords: cell division, protein, tuberculosis, gtp, gtp-gamma- s, cell cycle, signaling protein
- 2q91.pdb.
metal binding protein 12-jun-07 2q91
Ca
Title: structure of the ca2+-bound activated form of the s100a4 metastasis factor
Author: v. n. malashkevich, d. knight, u. a. ramagopal, s. c. almo, a. r. bresnick
Keywords: myosin, calcium, metastatic tumors, ef-hand, metal binding protein
- 2qef.pdb.
deoxyribonucleic acid 25-jun-07 2qef
Title: x-ray structure of 7-deaza-dg and z3du modified duplex cgcgaatxczcg
Author: f. wang, f. li, m. ganguly, l. a. marky, b. gold, m. egli, m. p. stone
Keywords: z3du, 7-deaza-dg
- 2qeg.pdb.
deoxyribonucleic acid 25-jun-07 2qeg
Title: b-dna with 7-deaza-dg modification
Author: f. wang, f. li, m. ganguly, l. a. marky, b. gold, m. egli, m. p. stone
Keywords: 7-deaza-dg
- 2qek.pdb.
ribonucleic acid 26-jun-07 2qek
Mg K
Title: hiv-1 subtype f dis rna extended duplex form
Author: s. freisz, e. ennifar, p. dumas
- 2qnx.pdb.
transferase 19-jul-07 2qnx
Title: crystal structure of the complex between the mycobacterium beta-ketoacyl-acyl carrier protein synthase iii (fabh) and 11-[(decyloxycarbonyl)dithio]-undecanoic acid
Author: s. sachdeva, f. musayev, m. alhamadsheh, j. n. scarsdale, h. t. wright, k. a. reynolds
Keywords: transferase
- 2qny.pdb.
transferase 19-jul-07 2qny
Title: crystal structure of the complex between the a246f mutant of mycobacterium beta-ketoacyl-acyl carrier protein synthase iii (fabh) and ss-(2-hydroxyethyl) o-decyl ester carbono(dithioperoxoic) acid
Author: s. sachdeva, f. musayev, m. alhamadsheh, j. n. scarsdale, h. t. wright, k. a. reynolds
Keywords: transferase
- 2qnz.pdb.
transferase 19-jul-07 2qnz
Title: crystal structure of the complex between the mycobacterium beta-ketoacyl-acyl carrier protein synthase iii (fabh) and ss-(2-hydroxyethyl)-o-decyl ester carbono(dithioperoxoic) acid
Author: s. sachdeva, f. musayev, m. alhamadsheh, j. n. scarsdale, h. t. wright, k. a. reynolds
Keywords: transferase
- 2qo0.pdb.
transferase 19-jul-07 2qo0
Title: crystal structure of the complex between the a246f mutant of mycobacterium beta-ketoacyl-acyl carrier protein synthase iii (fabh) and 11-(decyldithiocarbonyloxy)- undecanoic acid
Author: s. sachdeva, f. musayev, m. alhamadsheh, j. n. scarsdale, h. t. wright, k. a. reynolds
Keywords: transferase
- 2qo1.pdb.
transferase 19-jul-07 2qo1
Title: 2.6 angstrom crystal structure of the complex between 11- (decyldithiocarbonyloxy)-undecanoic acid and mycobacterium tuberculosis fabh.
Author: s. sachdeva, f. musayev, m. alhamadsheh, j. n. scarsdale, h. t. wright, k. a. reynolds
Keywords: multifunctional enzyme, transferase
- 2r2l.pdb.
transferase 27-aug-07 2r2l
Zn
Title: structure of farnesyl protein transferase bound to pb-93
Author: c. o. strickland, w. voorhis
Keywords: fpt, transferase, metal-binding, phosphorylation, prenyltransferase, zinc
- 2r5h.pdb.
viral protein 03-sep-07 2r5h
Title: pentamer structure of major capsid protein l1 of human papilloma virus type 16
Author: b. bishop, j. dasgupta, x. s. chen
Keywords: pentamer, protein, structure, type specific epitope, capsid protein, virion, viral protein
- 2r5i.pdb.
viral protein 03-sep-07 2r5i
Title: pentamer structure of major capsid protein l1 of human papilloma virus type 18
Author: b. bishop, j. dasgupta, x. s. chen
Keywords: pentamer, structure, type specific epitope, capsid, capsid protein, virion, viral protein
- 2r5j.pdb.
viral protein 03-sep-07 2r5j
Title: pentamer structure of major capsid protein l1 of human papilloma virus type 35
Author: b. bishop, j. dasgupta, x. s. chen
Keywords: capsid, pentamer, structure, type specific epitope, capsid protein, late protein, virion, viral protein
- 2r5k.pdb.
viral protein 03-sep-07 2r5k
Title: pentamer structure of major capsid protein l1 of human papilloma virus type 11
Author: b. bishop, j. dasgupta, x. s. chen
Keywords: capsid, pentamer, structure, type specific epitope, capsid protein, late protein, virion, viral protein
- 2r7y.pdb.
hydrolase/rna/dna 10-sep-07 2r7y
Mg Se
Title: selenium derivatized rna/dna hybrid in complex with rnase h catalytic domain mutant d132n
Author: j. -s. jiang, o. gerlits, z. huang
Keywords: rnase h, ribonuclease h rna/dna complex, cytoplasm, endonuclease, hydrolase, magnesium, manganese, metal-binding, hydrolase/rna/dna complex
- 2rar.pdb.
unknown function 17-sep-07 2rar
Mg V
Title: x-ray crystallographic structures show conservation of a trigonal-bipyramidal intermediate in a phosphoryl-transfer superfamily.
Author: z. lu, d. dunaway-mariano, k. n. allen
Keywords: unknown function
- 2rav.pdb.
unknown function 17-sep-07 2rav
Mg W
Title: x-ray crystallographic structures show conservation of a trigonal-bipyramidal intermediate in a phosphoryl-transfer superfamily.
Author: z. lu, d. dunaway-mariano, k. n. allen
Keywords: unknown function
- 2rb5.pdb.
unknown function 18-sep-07 2rb5
Mg W
Title: x-ray crystallographic structures show conservation of a trigonal-bipyramidal intermediate in a phosphoryl-transfer superfamily.
Author: z. lu, d. dunaway-mariano, k. n. allen
Keywords: unknown function
- 2rbk.pdb.
unknown function 19-sep-07 2rbk
Mg V
Title: x-ray crystallographic structures show conservation of a trigonal-bipyramidal intermediate in a phosphoryl-transfer superfamily.
Author: z. lu, d. dunaway-mariano, k. n. allen
Keywords: unknown function
- 2rdk.pdb.
antiviral protein 24-sep-07 2rdk
Title: five site mutated cyanovirin-n with mannose dimer bound
Author: r. fromme, z. katiliene, p. fromme, g. ghirlanda
Keywords: sugar binding protein, anti hiv, x-ray diffraction, antiviral protein, protein synthesis inhibitor
- 2rhq.pdb.
ligase 09-oct-07 2rhq
Zn
Title: phers from staphylococcus haemolyticus- rational protein engineering and inhibitor studies
Author: a. g. evdokimov, m. mekel
Keywords: phenylalanine, trna, aminoacyl-trna synthetase, atp-binding, cytoplasm, ligase, magnesium, metal-binding, nucleotide-binding, protein biosynthesis, rna-binding, trna-binding
- 2rhs.pdb.
ligase 09-oct-07 2rhs
Zn
Title: phers from staphylococcus haemolyticus- rational protein engineering and inhibitor studies
Author: a. g. evdokimov, m. mekel
Keywords: phenylalanine, trna, aminoacyl-trna synthetase, atp-binding, cytoplasm, ligase, magnesium, metal-binding, nucleotide-binding, protein biosynthesis, rna-binding, trna-binding
- 2rkb.pdb.
lyase 16-oct-07 2rkb
K
Title: serine dehydratase like-1 from human cancer cells
Author: t. yamada, j. komoto, t. kasuya, h. mori, h. ogawa, f. takusagawa
Keywords: plp bound enzyme, enzyme found in human cancer cells, lyase, pyridoxal phosphate
- 2rks.pdb.
hydrolase 17-oct-07 2rks
Title: crystal structure of staphylococcal nuclease variant phs l38k at cryogenic temperature
Author: j. l. schlessman, m. j. harms, e. b. garcia-moreno
Keywords: hyperstable variant, hydrolase, internal ion pair
- 2rnw.pdb.
transferase/nuclear protein 03-feb-08 2rnw
He Hg
(NMR, 20 structures)
Title: the structural basis for site-specific lysine-acetylated histone recognition by the bromodomains of the human transcriptional co-activators pcaf and cbp
Author: l. zeng, q. zhang, g. gerona-navarro, m. m. zhou
Keywords: dna repair, dna-binding, methylation, nucleosome core, phosphoprotein, transferase/nuclear protein complex
- 2rnx.pdb.
transferase/nuclear protein 03-feb-08 2rnx
He Hg
(NMR, 20 structures)
Title: the structural basis for site-specific lysine-acetylated histone recognition by the bromodomains of the human transcriptional co-activators pcaf and cbp
Author: l. zeng, q. zhang, g. gerona-navarro, m. m. zhou
Keywords: dna repair, dna-binding, methylation, nucleosome core, phosphoprotein, transferase/nuclear protein complex
- 2rny.pdb.
transferase/nuclear protein 03-feb-08 2rny
He Hg
(NMR, 20 structures)
Title: complex structures of cbp bromodomain with h4 ack20 peptide
Author: l. zeng, q. zhang, g. gerona-navarro, m. m. zhou
Keywords: transcription regulation, transferase, zinc, zinc-finger, chromosomal protein, dna- binding, nucleosome core, transferase/nuclear protein complex
- 2uvd.pdb.
oxidoreductase 09-mar-07 2uvd
Title: the crystal structure of a 3-oxoacyl-(acyl carrier protein) reductase from bacillus anthracis (ba3989)
Author: n. r. zaccai, l. g. carter, n. s. berrow, s. sainsbury, j. e. nettleship, t. s. walter, k. harlos, r. j. owens, k. s. wilson, d. i. stuart, r. m. esnouf, oxford protein production facility (oppf), structural proteomics in europe (spine)
Keywords: structural proteomics in europe (spine), structural genomics, fatty acid biosynthesis
- 2uvh.pdb.
sugar-binding protein 10-mar-07 2uvh
Title: structure of a periplasmic oligogalacturonide binding protein from yersinia enterocolitica in complex with saturated digalacturonic acid
Author: d. w. abbott, a. b. boraston
Keywords: periplasmic binding protein, togb, pectin degradation, digalacturonic acid, sugar-binding protein
- 2uvi.pdb.
sugar-binding protein 10-mar-07 2uvi
Title: structure of a periplasmic oligogalacturonide binding protein from yersinia enterocolitica in complex with 4,5- unsaturated digalacturonic acid
Author: d. w. abbott, a. b. boraston
Keywords: periplasmic binding protein, 4, togb, pectin degradation, yersinia enterocolitica, 5-unsaturated digalacturonic acid, sugar-binding protein
- 2v3f.pdb.
hydrolase 17-jun-07 2v3f
Title: acid-beta-glucosidase produced in carrot
Author: y. shaaltiel, d. bartfeld, s. hashmueli, g. baum, e. brill-almon, g. galili, o. dym, s. a. boldin-adamsky, i. silman, j. l. sussman, a. h. futerman, d. aviezer, israel structural proteomics center(ispc)
Keywords: membrane, lysosome, hydrolase, glycosidase
- 2v9h.pdb.
protein-binding 23-aug-07 2v9h
He Hg
(NMR, 20 structures)
Title: solution structure of an escherichia coli yaet tandem potra domain
Author: t. j. knowles, m. jeeves, s. bobat, f. dancea, d. m. mcclelland, t. palmer, m. overduin, i. r. henderson
Keywords: membrane, potra domain, outer membrane, outer membrane protein folding, protein-binding
- 2vdg.pdb.
oxidoreductase 08-oct-07 2vdg
Title: barley aldose reductase 1 complex with butanol
Author: j. g. olsen, l. pedersen, c. l. christensen, o. olsen, a. henriksen
Keywords: aldose reductase, aldo-keto reductase, nadp, akr4c, ligand complex, oxidoreductase
- 2vfk.pdb.
hydrolase 05-nov-07 2vfk
Title: akap18 delta central domain - amp
Author: m. g. gold, f. d. smith, j. d. scott, d. barford
Keywords: hydrolase
- 2vfl.pdb.
hydrolase 05-nov-07 2vfl
Title: akap18 delta central domain - cmp
Author: m. g. gold, f. d. smith, j. d. scott, d. barford
Keywords: hydrolase, phosphoesterase, camp, akap, pka, scaffold, cmp
- 2vfy.pdb.
hydrolase 06-nov-07 2vfy
Title: akap18 delta central domain
Author: m. g. gold, f. d. smith, j. d. scott, d. barford
Keywords: hydrolase
- 2vg3.pdb.
transferase 08-nov-07 2vg3
Cl Mg
Title: rv2361 with citronellyl pyrophosphate
Author: j. h. naismith, w. wang, c. dong
Keywords: cell cycle, cell shape, transferase, cell division, prenyl transferase, peptidoglycan synthesis
- 2vkj.pdb.
membrane protein 19-dec-07 2vkj
Title: structure of the soluble domain of the membrane protein tm1634 from thermotoga maritima
Author: c. j. mccleverty, l. columbus, a. kreusch, s. a. lesley, joint center for structural genomics (jcsg)
Keywords: x-ray, tpr motif, thermotoga maritima, sad, joint center for structural genomics, jcsg, structural genomics
- 2vko.pdb.
membrane protein 20-dec-07 2vko
Title: structure of the soluble domain of the membrane protein tm1634 from thermotoga maritima
Author: c. j. mccleverty, l. columbus, a. kreusch, s. a. lesley, joint center for structural genomics (jcsg)
Keywords: tpr motif, membrane protein, thermotoga maritima, structural genomics, jcsg, joint center for structural genomics
- 2vla.pdb.
hydrolase 11-jan-08 2vla
Na
Title: crystal structure of restriction endonuclease bpuji recognition domain in complex with cognate dna
Author: r. sukackaite, s. grazulis, m. bochtler, v. siksnys
Keywords: hydrolase, endonuclease, dna recognition, helix-turn-helix
- 2vmg.pdb.
sugar-binding protein 25-jan-08 2vmg
Ca
Title: the structure of cbm51 from clostridium perfringens gh95 in complex with methyl-galactose
Author: k. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: sugar-binding protein, galactose, fucosidase, clostridium perfringens
- 2vmh.pdb.
sugar-binding protein 25-jan-08 2vmh
Ca
Title: the structure of cbm51 from clostridium perfringens gh95
Author: k. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: sugar-binding protein, galactose, fucosidase, clostridium perfringens
- 2vmi.pdb.
sugar-binding protein 25-jan-08 2vmi
Ca Se
Title: the structure of seleno-methionine labelled cbm51 from clostridium perfringens gh95
Author: k. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: sugar-binding protein, galactose, fucosidase, clostridium perfringens
- 2vnd.pdb.
hydrolase 04-feb-08 2vnd
Cl Mg
Title: the n69q mutant of vibrio cholerae endonuclease i
Author: l. niiranen, b. altermark, b. o. brandsdal, h. -k. s. leiros, r. helland, a. o. smalas, n. p. willassen
Keywords: endonuclease i, salt adaptation, vibrio, nuclease, kinetics, secreted, hydrolase, thermodynamic stability
- 2vng.pdb.
hydrolase 04-feb-08 2vng
Ca
Title: family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by clostridium perfringens in complex with blood group a-trisaccharide ligand.
Author: k. j. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: clostridium perfringens, family 98 glycoside hydrolase, a-trisaccharide, blood group antigen, hydrolase
- 2vno.pdb.
hydrolase 05-feb-08 2vno
Ca
Title: family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by clostridium perfringens in complex with blood group b-trisaccharide ligand.
Author: k. j. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: clostridium perfringens, family 98 glycoside hydrolase, b-trisaccharide, blood group antigens, hydrolase
- 2vnp.pdb.
isomerase 06-feb-08 2vnp
Mg Mn
Title: monoclinic form of idi-1
Author: j. de ruyck, y. oudjama, j. wouters
Keywords: polymorphism, metal-binding, ipp isomerase, manganese, cytoplasm, isomerase, magnesium
- 2vnq.pdb.
isomerase 06-feb-08 2vnq
Mn
Title: monoclinic form of idi-1
Author: j. de ruyck, y. oudjama, j. wouters
Keywords: polymorphism, metal-binding, ipp isomerase, manganese, cytoplasm, isomerase, magnesium
- 2vnr.pdb.
hydrolase 06-feb-08 2vnr
Ca
Title: family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by clostridium perfringens.
Author: k. j. gregg, r. finn, d. w. abbott, a. b. boraston
Keywords: family 98 glycoside hydrolase, clostridium perfringens, hydrolase
- 2vns.pdb.
oxidoreductase 07-feb-08 2vns
Title: crystal structure of the membrane proximal oxidoreductase domain of human steap3, the dominant ferric reductase of the erythroid transferrin cycle
Author: a. k. sendamarai, r. s. ohgami, m. d. fleming, c. m. lawrence
Keywords: oxidoreductase, steap3, copper, membrane, endosome, apoptosis, tf, nad, tfr, fad, fno, nadp, tfr1, iron, steap, polymorphism, glycoprotein, ion transport, dinucleotide-binding domain
- 2vob.pdb.
ligase 13-feb-08 2vob
Cl
Title: trypanothione synthetase
Author: p. k. fyfe, s. l. oza, a. h. fairlamb, w. n. hunter
- 2vod.pdb.
rna-binding protein 15-feb-08 2vod
Title: crystal structure of n-terminal domains of human la protein complexed with rna oligomer auauuuu
Author: o. kotik-kogan, e. valentine, d. sanfelice, m. r. conte, s. curry
Keywords: systemic lupus erythematosus, phosphoprotein, rna maturation, rna-binding protein, nucleus, la motif, rna-binding, polymorphism
- 2vok.pdb.
immune system 19-feb-08 2vok
Title: murine trim21
Author: a. h. keeble, z. khan, a. forster, l. c. james
Keywords: zinc-finger, dna-binding, rna-binding, coiled coil
- 2vol.pdb.
immune system 19-feb-08 2vol
Title: murine trim21 in complex with murine igg fc
Author: a. h. keeble, z. khan, a. forster, l. c. james
Keywords: polymorphism, metal-binding, ribonucleoprotein, systemic lupus erythematosus
- 2von.pdb.
rna-binding protein 19-feb-08 2von
Title: crystal structure of n-terminal domains of human la protein complexed with rna oligomer auaauuu
Author: o. kotik-kogan, e. valentine, d. sanfelice, m. r. conte, s. curry
Keywords: systemic lupus erythematosus, phosphoprotein, rna maturation, rna binding protein, nucleus, la motif, rna-binding, polymorphism, rna-binding protein
- 2voo.pdb.
rna-binding protein 19-feb-08 2voo
Title: crystal structure of n-terminal domains of human la protein complexed with rna oligomer uuuuuuuu
Author: o. kotik-kogan, e. valentine, d. sanfelice, m. r. conte, s. curry
Keywords: systemic lupus erythematosus, phosphoprotein, rna maturation, rna binding protein, nucleus, la motif, rna-binding, polymorphism, rna-binding protein
- 2vop.pdb.
rna-binding protein 19-feb-08 2vop
Title: crystal structure of n-terminal domains of human la protein complexed with rna oligomer auuuu
Author: o. kotik-kogan, e. valentine, d. sanfelice, m. r. conte, s. curry
Keywords: systemic lupus erythematosus, phosphoprotein, rna maturation, rna binding protein, nucleus, la motif, rna-binding, polymorphism, rna-binding protein
- 2vp0.pdb.
transferase 26-feb-08 2vp0
Mg
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vp2.pdb.
transferase 26-feb-08 2vp2
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vp4.pdb.
transferase 26-feb-08 2vp4
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vp5.pdb.
transferase 26-feb-08 2vp5
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vp6.pdb.
transferase 26-feb-08 2vp6
F
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vp9.pdb.
transferase 27-feb-08 2vp9
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vpm.pdb.
ligase 03-mar-08 2vpm
Cl Br
Title: trypanothione synthetase
Author: p. k. fyfe, s. l. oza, a. h. fairlamb, w. n. hunter
- 2vps.pdb.
ligase 04-mar-08 2vps
Cl Br
Title: structure of the bifunctional leishmania major trypanothione synthetase-amidase
Author: p. k. fyfe, s. l. oza, a. h. fairlamb, w. n. hunter
- 2vpt.pdb.
hydrolase 04-mar-08 2vpt
Ca Se
Title: clostridium thermocellum family 3 carbohydrate esterase
Author: m. a. s. correia, j. a. m. prates, j. bras, c. m. g. a. fontes, j. a. newman, r. j. lewis, h. j. gilbert, j. e. flint
Keywords: hydrolase
- 2vq3.pdb.
oxidoreductase 10-mar-08 2vq3
Title: crystal structure of the membrane proximal oxidoreductase domain of human steap3, the dominant ferric reductase of the erythroid transferrin cycle
Author: a. k. sendamarai, r. s. ohgami, m. d. fleming, c. m. lawrence
Keywords: oxidoreductase, steap3, copper, membrane, endosome, apoptosis, tf, nad, tfr, fad, fno, nadp, tfr1, iron, steap, polymorphism, glycoprotein, ion transport, dinucleotide-binding domain
- 2vqc.pdb.
dna-binding protein 12-mar-08 2vqc
Se
Title: structure of a dna binding winged-helix protein, f-112, from sulfolobus spindle-shaped virus 1.
Author: s. menon, p. kraft, g. j. corn, b. wiedenheft, m. young, c. m. lawrence
Keywords: winged-helix, crenarchaeal, dna-binding protein, thermophilic protein, sulfolobus spindle virus
- 2vqs.pdb.
transferase 18-mar-08 2vqs
Br
Title: structural studies of nucleoside analog and feedback inhibitor binding to drosophila melanogaster multisubstrate deoxyribonucleoside kinase
Author: n. e. mikkelsen, b. munch-petersen, h. eklund
Keywords: dna synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway, nucleotide-binding, dttp, kinase, complex, drosophila, transferase
- 2vrl.pdb.
oxidoreductase 09-apr-08 2vrl
Title: structure of human mao b in complex with benzylhydrazine
Author: c. binda, j. wang, m. li, f. hubalek, a. mattevi, d. e. edmondson
Keywords: flavin, membrane, hydrazine, acetylation, flavoprotein, mitochondrion, transmembrane, inhibitor binding, oxidoreductase, membrane protein, monoamine oxidase
- 2vrm.pdb.
oxidoreductase 09-apr-08 2vrm
Title: structure of human mao b in complex with phenyethylhydrazine
Author: c. binda, j. wang, m. li, f. hubalek, a. mattevi, d. e. edmondson
Keywords: flavin, membrane, hydrazine, acetylation, flavoprotein, mitochondrion, transmembrane, inhibitor binding, oxidoreductase, membrane protein, monoamine oxidase
- 2vry.pdb.
oxygen storage/transport 16-apr-08 2vry
Fe
Title: mouse neuroglobin with heme iron in the reduced ferrous state
Author: a. arcovito, t. moschetti, p. d'angelo, g. mancini, b. vallone, m. brunori, s. della longa
Keywords: metal- binding, photoreduction, oxygen transport, iron, heme, ferrous, transport, neuroglobin, globin fold, heme protein, metal-binding
- 2vsj.pdb.
oxidoreductase 24-apr-08 2vsj
Fe
Title: crystal structure of the yc-17-bound pikc d50n mutant
Author: s. li, d. h. sherman, l. m. podust
Keywords: pikc, iron, heme, cyp107l1, monooxygenase, antibiotic biosynthesis, macrolide monooxygenase, metal-binding, oxidoreductase, cytochrome p450
- 2yxs.pdb.
sugar binding protein 27-apr-07 2yxs
Se
Title: crystal sturcture of n-terminal domain of human galectin-8 with d-lactose
Author: s. kishishita, a. nishino, k. murayama, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: lactose, galectin, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, sugar binding protein
- 2yy4.pdb.
hydrolase 27-apr-07 2yy4
Title: crystal structure of ms8104
Author: h. wang, y. kim, t. muramatsu, c. takemoto, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: sars coronavirus main proteinase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2yyb.pdb.
structural genomics, unknown function 28-apr-07 2yyb
Title: crystal structure of ttha1606 from thermus thermophilus hb8
Author: f. tomoike, n. nakagwa, a. ebihara, s. yokoyama, r. masui, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, unknown function, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2yyd.pdb.
transferase 29-apr-07 2yyd
Title: crystal structure of selenophosphate synthetase
Author: s. sekine, e. matsumoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, transferase
- 2yyn.pdb.
transcription 30-apr-07 2yyn
Title: crystal sturcture of human bromodomain protein
Author: s. kishishita, t. uchikubo-kamo, k. murayama, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: transcription, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2yyo.pdb.
structural genomics, unknown function 30-apr-07 2yyo
Se
Title: crystal sturcture of human spry domain
Author: s. kishishita, t. uchikubo-kamo, k. murayama, t. terada, l. chen, z. q. fu, j. chrzas, m. shirouzu, b. c. wang, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, structural genomics, unknown function
- 2yyr.pdb.
metal binding protein 01-may-07 2yyr
Zn Se
Title: structural analysis of phd domain of pygopus complexed with trimethylated histone h3 peptide
Author: y. nakamura, b. padmanabhan, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: metal binding protein
- 2yyw.pdb.
electron transport 02-may-07 2yyw
Fe
Title: the f20m mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Author: y. higuchi, h. komori
- 2yyx.pdb.
electron transport 02-may-07 2yyx
Fe
Title: the y65a mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Author: y. higuchi, h. komori
- 2yz0.pdb.
transferase 02-may-07 2yz0
He Hg
(NMR, 20 structures)
Title: solution structure of rwd/gi domain of saccharomyces cerevisiae gcn2
Author: k. ogura, s. torikai, h. kumeta, f. inagaki
Keywords: amino acid starvation signal response, eif2alpha kinase, transferase
- 2yz8.pdb.
structural protein 04-may-07 2yz8
Se
Title: crystal structure of the 32th ig-like domain of human obscurin (kiaa1556)
Author: s. saijo, n. ohsawa, a. nishino, s. kishishita, l. chen, z. q. fu, j. chrzas, b. c. wang, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: kiaa1556, ig fold, structural protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2yza.pdb.
transferase 04-may-07 2yza
Title: crystal structure of kinase domain of human 5'-amp- activated protein kinase alpha-2 subunit mutant (t172d)
Author: s. saijo, t. takagi, s. yoshikawa, s. kishishita, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2yzb.pdb.
oxidoreductase 05-may-07 2yzb
Title: crystal structure of uricase from arthrobacter globiformis in complex with uric acid (substrate)
Author: e. c. m. juan, m. t. hossain, m. m. hoque, k. suzuki, t. sekiguchi, a. takenaka
Keywords: oxidoreductase, uric acid
- 2yzc.pdb.
oxidoreductase 05-may-07 2yzc
Title: crystal structure of uricase from arthrobacter globiformis in complex with allantoate
Author: e. c. m. juan, m. t. hossain, m. m. hoque, k. suzuki, t. sekiguchi, a. takenaka
Keywords: oxidoreductase, allantoate
- 2yzd.pdb.
oxidoreductase 05-may-07 2yzd
Title: crystal structure of uricase from arthrobacter globiformis in complex with 8-azaxanthin (inhibitor)
Author: e. c. m. juan, m. t. hossain, m. m. hoque, k. suzuki, t. sekiguchi, a. takenaka
Keywords: oxidoreductase, 8-azaxanthin
- 2yze.pdb.
oxidoreductase 05-may-07 2yze
B Li
Title: crystal structure of uricase from arthrobacter globiformis
Author: e. c. m. juan, m. t. hossain, m. m. hoque, k. suzuki, t. sekiguchi, a. takenaka
Keywords: oxidoreductase
- 2z0b.pdb.
hydrolase 07-may-07 2z0b
Se
Title: crystal structure of cbm20 domain of human putative glycerophosphodiester phosphodiesterase 5 (kiaa1434)
Author: s. saijo, a. nishino, s. kishishita, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2z2n.pdb.
lyase 25-may-07 2z2n
Cl Se
Title: crystal structure of selenomethionine substituted virginiamycin b lyase from staphylococcus aureus
Author: m. korczynska, a. m. berghuis
Keywords: seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin b lyase, virginiamycin b hydrolase, streptogramin
- 2z2o.pdb.
lyase 25-may-07 2z2o
Cl
Title: crystal structure of apo virginiamycin b lyase from staphylococcus aureus
Author: m. korczynska, a. m. berghuis
Keywords: seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin b lyase, virginiamycin b hydrolase, streptogramin
- 2z2p.pdb.
lyase 25-may-07 2z2p
Mg
Title: crystal structure of catalytically inactive h270a virginiamycin b lyase from staphylococcus aureus with quinupristin
Author: m. korczynska, a. m. berghuis
Keywords: seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, streptogramin, quinupristin, dalfopristin, virginiamycin b lyase, virginiamycin b hydrolase
- 2z2w.pdb.
transferase 29-may-07 2z2w
Cl
Title: humand wee1 kinase complexed with inhibitor pf0335770
Author: c. j. squire, e. n. baker
Keywords: inhibitor complex, transferase
- 2z3c.pdb.
hydrolase 04-jun-07 2z3c
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
Keywords: hydrolase
- 2z3d.pdb.
hydrolase 04-jun-07 2z3d
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
Keywords: hydrolase
- 2z3e.pdb.
hydrolase inhibitor, viral protein 04-jun-07 2z3e
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
Keywords: 3c-like peptidase, 3cl, main proteinase, chymotrypsin, viral cysteine protease, hydrolase inhibitor, viral protein
- 2z7h.pdb.
transferase 23-aug-07 2z7h
Mg
Title: s. cerevisiae geranylgeranyl pyrophosphate synthase in complex with inhibitor bph-210
Author: r. cao, c. k. -m. chen, r. -t. guo, m. hudock, a. h. -j. wang, e. oldfield
Keywords: geranylgeranyl pyrophosphate, bisphosphonate, carotenoid biosynthesis, cytoplasm, isoprene biosynthesis, multifunctional enzyme, protein transport, transport
- 2z8r.pdb.
lyase 10-sep-07 2z8r
Ca
Title: crystal structure of rhamnogalacturonan lyase yesw at 1.40 a resolution
Author: a. ochiai, t. itoh, y. maruyama, a. kawamata, b. mikami, w. hashimoto, k. murata
Keywords: lyase
- 2z8s.pdb.
lyase 10-sep-07 2z8s
Ca
Title: crystal structure of rhamnogalacturonan lyase yesw complexed with digalacturonic acid
Author: a. ochiai, t. itoh, y. maruyama, a. kawamata, b. mikami, w. hashimoto, k. murata
Keywords: lyase
- 2z91.pdb.
immune system 14-sep-07 2z91
Title: crystal structure of the fab fragment of anti-ciguatoxin antibody 10c9
Author: m. ui, y. tanaka, k. tsumoto
Keywords: immune system
- 2z92.pdb.
immune system 14-sep-07 2z92
Title: crystal structure of the fab fragment of anti-ciguatoxin antibody 10c9 in complex with ctx3c_abcde
Author: m. ui, y. tanaka, k. tsumoto
Keywords: immune system
- 2z93.pdb.
immune system 14-sep-07 2z93
Title: crystal structure of fab fragment of anti-ciguatoxin antibody 10c9 in complex with ctx3c-abcd
Author: m. ui, y. tanaka, k. tsumoto
Keywords: immune system
- 2zf5.pdb.
transferase 20-dec-07 2zf5
Title: crystal structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon
Author: y. koga, r. katsumi, d. -j. you, h. matsumura, k. takano, s. kanaya
Keywords: hyperthermophilic archaeon, atp-binding, glycerol metabolism, nucleotide-binding, transferase
- 2zhr.pdb.
hydrolase/hydrolase inhibitor 08-feb-08 2zhr
Title: crystal structure of bace1 in complex with om99-2 at ph 5.0
Author: h. shimizu, n. nukina
Keywords: ph 5.0, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, protease, transmembrane, zymogen, hydrolase/hydrolase inhibitor complex
- 2ziy.pdb.
signaling protein 27-feb-08 2ziy
Title: crystal structure of squid rhodopsin
Author: m. miyano, t. shimamura
Keywords: signaling protein
- 2zkq.pdb.
ribosomal protein/rna 27-mar-08 2zkq
(cryo-electron microscopy)
Title: structure of a mammalian ribosomal 40s subunit within an 80s complex obtained by docking homology models of the rna and proteins into an 8.7 a cryo-em map
Author: p. chandramouli, c. w. akey
Keywords: 40s ribosomal subunit, ribosomal protein/rna complex
- 2zkr.pdb.
ribosomal protein/rna 27-mar-08 2zkr
(cryo-electron microscopy)
Title: structure of a mammalian ribosomal 60s subunit within an 80s complex obtained by docking homology models of the rna and proteins into an 8.7 a cryo-em map
Author: p. chandramouli, c. w. akey
Keywords: 60s ribosomal subunit, ribosomal protein/rna complex
- 3b2p.pdb.
hydrolase 18-oct-07 3b2p
Zn Na
Title: crystal structure of e. coli aminopeptidase n in complex with arginine
Author: a. anthony, g. leslie, b. w. matthews
Keywords: hydrolase, aminopeptidase n, thermolysin, , membrane, metal-binding, metalloprotease, zinc, ----
- 3b2x.pdb.
hydrolase 19-oct-07 3b2x
Zn Na
Title: crystal structure of e. coli aminopeptidase n in complex with lysine
Author: a. addlagatta, l. gay, b. w. matthews
Keywords: protease, hydrolase, thermolysin, lysin, membrane, metal-binding, metalloprotease, zinc
- 3b34.pdb.
hydrolase 19-oct-07 3b34
Zn Na
Title: crystal structure of e. coli aminopeptidase n in complex with phenylalanine
Author: a. addlagatta
Keywords: protease, hydrolase, thermolysin, phenylalanine, membrane, metal-binding, metalloprotease, zinc
- 3b37.pdb.
hydrolase 19-oct-07 3b37
Zn Na
Title: crystal structure of e. coli aminopeptidase n in complex with tyrosine
Author: a. addlagatta
Keywords: protease, hydrolase, thermolysin, tyrosine, membrane, metal-binding, metalloprotease, zinc
- 3b3b.pdb.
hydrolase 19-oct-07 3b3b
Zn Na
Title: crystal structure of e. coli aminopeptidase n in complex with tryptophan
Author: a. addlagatta
Keywords: protease, hydrolase, thermolysin, trptophan, membrane, metal-binding, metalloprotease, zinc
- 3b5h.pdb.
cell invasion 26-oct-07 3b5h
Title: crystal structure of the extracellular portion of hab18g/cd147
Author: x. -l. yu, z. -n. chen
Keywords: cell invasion
- 3brx.pdb.
membrane protein 21-dec-07 3brx
Ca
Title: crystal structure of calcium-bound cotton annexin gh1
Author: n. -j. hu, a. hofmann
Keywords: membrane binding, annexin, membrane protein
- 3bt5.pdb.
structural genomics, unknown function 27-dec-07 3bt5
Cl
Title: crystal structure of duf305 fragment from deinococcus radiodurans
Author: u. a. ramagopal, y. patskovsky, m. rutter, r. toro, k. bain, a. j. meyer, a. powell, t. gheyi, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3btn.pdb.
biosynthetic protein 30-dec-07 3btn
Title: crystal structure of antizyme inhibitor, an ornithine decarboxylase homologous protein
Author: o. dym, t. unger, s. albeck, c. kahana, israel structural proteomics center (ispc)
Keywords: structural genomics, israel structural proteomics center, ispc, polyamine biosynthesis, biosynthetic protein
- 3bv9.pdb.
hydrolase 05-jan-08 3bv9
I Na
Title: structure of thrombin bound to the inhibitor fm19
Author: m. t. nieman, f. burke, m. warnock, y. zhou, j. sweigert, a. chen, d. ricketts, b. r. lucchesi, z. chen, e. di cera, j. hilfinger, h. i. mosberg, a. h. schmaier
Keywords: acute phase, blood coagulation, calcium, cleavage on pair of basic residues, disease mutation, gamma- carboxyglutamic acid, glycoprotein, hydrolase, kringle, polymorphism, secreted, zymogen
- 3by1.pdb.
viral protein 15-jan-08 3by1
Title: unliganded norvalk virus p domain
Author: r. hegde, w. bu
Keywords: viral protein
- 3by2.pdb.
viral protein 15-jan-08 3by2
Title: norwalk p polypeptide (228-523)
Author: r. hegde, w. bu
Keywords: viral protein
- 3by3.pdb.
viral protein 15-jan-08 3by3
Title: norwalk p domain a-trisaccharide complex
Author: r. hegde, w. bu
Keywords: viral protein
- 3bzl.pdb.
membrane protein, protein transport 18-jan-08 3bzl
Na
Title: crystal structural of native escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, t3ss, type iii secretion system, membrane protein, membrane protein, protein transport
- 3bzo.pdb.
membrane protein, protein transport 18-jan-08 3bzo
Title: crystal structural of native escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, t3ss, membrane protein, protein transport
- 3bzp.pdb.
membrane protein, protein transport 18-jan-08 3bzp
Title: crystal structural of the mutated n262a escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: t3ss, membrane, asparagine cyclization, membrane protein, protein transport
- 3bzr.pdb.
membrane protein, protein transport 18-jan-08 3bzr
Title: crystal structure of escu c-terminal domain with n262d mutation, space group p 41 21 2
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: asparagine cyclyzation, intein, membrane, membrane protein, protein transport
- 3bzs.pdb.
membrane protein, protein transport 18-jan-08 3bzs
Title: crystal structure of escu c-terminal domain with n262d mutation, space group p 21 21 21
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, t3ss, ttss, asparagine cyclization, membrane, membrane protein, protein transport
- 3bzt.pdb.
membrane protein, protein transport 18-jan-08 3bzt
Title: crystal structural of the mutated p263a escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, asparagine cyclization, type iii secretion system, t3ss, membrane protein, protein transport
- 3bzv.pdb.
membrane protein, protein transport 18-jan-08 3bzv
Title: crystal structural of the mutated t264a escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, t3ss, membrane protein, protein transport
- 3bzx.pdb.
membrane protein, protein transport 18-jan-08 3bzx
Title: crystal structure of the mutated h265a escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, t3ss, membrane protein, protein transport
- 3bzy.pdb.
membrane protein, protein transport 18-jan-08 3bzy
Title: crystal structure of the mutated y316d escu c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: flagella, intein, t3ss, membrane, membrane protein, protein transport
- 3bzz.pdb.
membrane protein, protein transport 18-jan-08 3bzz
Title: crystal structural of the mutated r313t escu/spas c- terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein, flagella, t3ss, membrane protein, protein transport
- 3c00.pdb.
membrane protein, protein transport 18-jan-08 3c00
Title: crystal structural of the mutated g247t escu/spas c- terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: flagella, t3ss, intein, asparagine cyclization, yscu, membrane protein, protein transport
- 3c01.pdb.
membrane protein, protein transport 18-jan-08 3c01
Title: crystal structural of native spas c-terminal domain
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: flagella, escu, yscu, intein, t3ss, membrane, inner membrane, transmembrane, virulence, membrane protein, protein transport
- 3c03.pdb.
membrane protein, protein transport 18-jan-08 3c03
Title: crystal structure of the escu c-terminal domain with p263a mutation,space group p 1 21 1
Author: r. zarivach, w. deng, m. vuckovic, h. b. felise, h. v. nguyen, s. i. miller, b. b. finlay, n. c. j. strynadka
Keywords: intein succinimid, asparagine cyclization, flagella, t3ss, membrane protein, protein transport
- 3c0f.pdb.
unknown function 20-jan-08 3c0f
Title: crystal structure of a novel non-pfam protein af1514 from archeoglobus fulgidus dsm 4304 solved by s-sad using a cr x-ray source
Author: y. li, p. bahti, n. shaw, g. song, j. yin, j. -y. zhu, h. zhang, h. xu, b. - c. wang, z. -j. liu
Keywords: sulphur sad, methylated, unknown function
- 3c0w.pdb.
hydrolase/dna 21-jan-08 3c0w
Na Ca
Title: i-scei in complex with a bottom nicked dna substrate
Author: c. m. moure, f. s. gimble, f. a. quiocho
Keywords: homing, ladlidadg, catalytic mechanism, metal binding, nicked intermediate, hydrolase, intron homing, mitochondrion, mrna processing, mrna splicing, hydrolase/dna complex
- 3c0x.pdb.
hydrolase/dna 21-jan-08 3c0x
Ca
Title: i-scei in complex with a top nicked dna substrate
Author: c. m. moure, f. s. gimble, f. a. quiocho
Keywords: homing, ladlidadg, catalytic mechanism, metal binding, nicked intermediate, hydrolase, intron homing, mitochondrion, mrna processing, mrna splicing, hydrolase/dna complex
- 3c1o.pdb.
oxidoreductase 23-jan-08 3c1o
Title: the multiple phenylpropene synthases in both clarkia breweri and petunia hybrida represent two distinct lineages
Author: g. v. louie, j. p. noel, m. e. bowman
Keywords: phenylpropene, pip reductase, short-chain dehydrogenase/reductase, oxidoreductase
- 3c1x.pdb.
transferase 24-jan-08 3c1x
F
Title: crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-met in complex with a pyrrolotriazine based inhibitor
Author: j. sack
Keywords: signal transduction, grb2, shc, atp-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene, transferase, transmembrane, tyrosine-protein kinase
- 3c1y.pdb.
dna binding protein 24-jan-08 3c1y
Title: structure of bacterial dna damage sensor protein with co- purified and co-crystallized ligand
Author: g. witte, s. hartung, k. buttner, k. p. hopfner
Keywords: dna repair, dna-binding, dna binding protein
- 3c1z.pdb.
dna binding protein 24-jan-08 3c1z
Title: structure of the ligand-free form of a bacterial dna damage sensor protein
Author: g. witte, s. hartung, k. buttner, k. p. hopfner
Keywords: dna repair, dna-binding, dna binding protein
- 3c21.pdb.
dna binding protein 24-jan-08 3c21
Title: structure of a bacterial dna damage sensor protein with reaction product
Author: g. witte, s. hartung, k. buttner, k. p. hopfner
Keywords: dna repair, dna-binding, dna binding protein
- 3c23.pdb.
dna binding protein 24-jan-08 3c23
Title: structure of a bacterial dna damage sensor protein with non- reactive ligand
Author: g. witte, s. hartung, k. buttner, k. p. hopfner
Keywords: dna repair, dna-binding, dna binding protein
- 3c3d.pdb.
transferase 28-jan-08 3c3d
Se
Title: crystal structure of 2-phospho-(s)-lactate transferase from methanosarcina mazei in complex with fo and phosphate. northeast structural genomics consortium target mar46
Author: f. forouhar, m. abashidze, h. xu, l. l. grochowski, j. seetharaman, m. hussain, a. p. kuzin, y. chen, w. zhou, r. xiao, t. b. acton, g. t. montelione, a. galinier, r. h. white, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, magnesium, transferase
- 3c3e.pdb.
transferase 28-jan-08 3c3e
Se
Title: crystal structure of 2-phospho-(s)-lactate transferase from methanosarcina mazei in complex with fo and gdp. northeast structural genomics consortium target mar46
Author: f. forouhar, m. abashidze, h. xu, l. l. grochowski, j. seetharaman, m. hussain, a. p. kuzin, y. chen, w. zhou, r. xiao, t. b. acton, g. t. montelione, a. galinier, r. h. white, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg , magnesium, transferase
- 3c3x.pdb.
oxidoreductase 29-jan-08 3c3x
Title: the multiple phenylpropene synthases in both clarkia breweri and petunia hybrida represent two distinct lineages
Author: g. v. louie, j. p. noel, m. e. bowman
Keywords: phenylpropene, pip reductase, short-chain dehydrogenase/reductase, nadp, oxidoreductase, phenylpropanoid metabolism
- 3c3z.pdb.
ribonucleic acid 29-jan-08 3c3z
Se
Title: crystal structure of hiv-1 subtype f dis extended duplex rna bound to ribostamycin
Author: s. freisz, k. lang, r. micura, p. dumas, e. ennifar
Keywords: rna, antibiotic
- 3c44.pdb.
ribonucleic acid 29-jan-08 3c44
Cl K
Title: crystal structure of hiv-1 subtype f dis extended duplex rna bound to paromomycin
Author: s. freisz, e. ennifar, p. dumas
Keywords: rna, antibiotic, paromomycin, extended duplex
- 3c59.pdb.
signaling protein/signaling protein 31-jan-08 3c59
Se
Title: crystal structure of the ligand-bound glucagon-like peptide- 1 receptor extracellular domain
Author: s. runge
Keywords: signaling protein/signaling protein complex
- 3c5d.pdb.
ribonucleic acid 31-jan-08 3c5d
K Se
Title: crystal structure of hiv-1 subtype f dis extended duplex rna bound to lividomycin
Author: s. freisz, k. lang, r. micura, p. dumas, e. ennifar
Keywords: rna, aminoglycoside,lividomycin, extended duplex
- 3c5t.pdb.
signaling protein/signaling protein 01-feb-08 3c5t
Title: crystal structure of the ligand-bound glucagon-like peptide- 1 receptor extracellular domain
Author: s. runge
Keywords: signaling protein/signaling protein complex
- 3c5u.pdb.
transferase 01-feb-08 3c5u
F
Title: p38 alpha map kinase complexed with a benzothiazole based inhibitor
Author: j. s. sack
Keywords: kinase, transferase, p38 map kinase, alternative splicing, atp-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein
- 3c62.pdb.
electron transport 02-feb-08 3c62
Zn Fe Ca
Title: tetrameric cytochrome cb562 (h59/d62/h63/h73/a74/h77) assembly stabilized by interprotein zinc coordination
Author: f. a. tezcan, e. n. salgado, r. a. lewis, j. faraone-mennella
Keywords: interfacial zn-coordination, electron transport, heme, iron, metal-binding, periplasm, transport
- 3c63.pdb.
electron transport 02-feb-08 3c63
Zn Fe Ca
Title: tetrameric cytochrome cb562 (k34/h59/d62/h63/h73/a74/h77) assembly stabilized by interprotein zinc coordination
Author: f. a. tezcan, e. n. salgado, r. a. lewis, j. faraone-mennella
Keywords: interfacial zn-coordination, electron transport, heme, iron, metal-binding, periplasm, transport
- 3c7k.pdb.
signaling protein 07-feb-08 3c7k
Mg F Al
Title: molecular architecture of galphao and the structural basis for rgs16-mediated deactivation
Author: k. c. slep, m. a. kercher, t. wieland, c. chen, m. i. simon, p. b. sigler
Keywords: signaling protein
- 3c7l.pdb.
signaling protein 07-feb-08 3c7l
Title: molecular architecture of galphao and the structural basis for rgs16-mediated deactivation
Author: k. c. slep, m. a. kercher, t. wieland, c. chen, m. i. simon, p. b. sigler
Keywords: rgs16, gap, gtpase activating protein, heterotrimeric g-protein, lipoprotein, palmitate, phosphoprotein, signal transduction inhibitor, signaling protein
- 3c7r.pdb.
ribonucleic acid 08-feb-08 3c7r
K Se
Title: crystal structure of hiv-1 subtype f dis extended duplex rna bound to neomycin
Author: s. freisz, k. lang, r. micura, p. dumas, e. ennifar
Keywords: rna, aminoglycoside, neomycin, extended duplex
- 3c9n.pdb.
immune system 18-feb-08 3c9n
Title: crystal structure of a sars corona virus derived peptide bound to the human major histocompatibility complex class i molecule hla-b*1501
Author: g. a. roder, o. kristensen, j. s. kastrup, s. buus, m. gajhede
Keywords: pyrrolidone carboxylic acid, secreted, immune system
- 3ca8.pdb.
structural genomics, unknown function 19-feb-08 3ca8
Title: crystal structure of escherichia coli ydcf, an s-adenosyl-l- methionine utilizing enzyme
Author: k. lim, k. chao, c. lehmann, o. herzberg, structure 2 function project (s2f)
Keywords: alpha/beta fold, helix bundle, structural genomics, structure 2 function project, s2f, structural genomics, unknown function
- 3cam.pdb.
gene regulation 20-feb-08 3cam
Se
Title: crystal structure of the cold shock domain protein from neisseria meningitidis
Author: j. ren, s. sainsbury, r. j. owens, oxford protein production facility (oppf)
Keywords: cold shock protein, chain swap, structural genomics, oxford protein production facility, oppf, cytoplasm, gene regulation
- 3cax.pdb.
structural genomics, unknown function 20-feb-08 3cax
Title: crystal structure of uncharacterized protein pf0695
Author: u. a. ramagopal, s. hu, r. toro, m. gilmore, k. bain, a. j. meyer, l. rodgers, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3ce2.pdb.
structural genomics, unknown function 28-feb-08 3ce2
Zn
Title: crystal structure of putative peptidase from chlamydophila abortus
Author: u. a. ramagopal, r. toro, m. gilmore, m. eberle, m. maletic, a. j. meyer, l. rodgers, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, putative peptidase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cey.pdb.
transcription regulator 29-feb-08 3cey
Title: crystal structure of l3mbtl2
Author: n. nady, y. guo, p. pan, a. allali-hassani, c. qi, h. zhu, a. dong, f. mackenzie, l. crombet, p. loppnau, i. kozieradzki, m. vedadi, a. m. edwards, j. weigelt, c. bountra, c. h. arrowsmith, a. bochkarev, r. read, j. min, structural genomics consortium (sgc)
Keywords: transcription regulator
- 3cf1.pdb.
transport protein 01-mar-08 3cf1
F Al
Title: structure of p97/vcp in complex with adp/adp.alfx
Author: j. m. davies, b. delabarre, a. t. brunger, w. i. weis
Keywords: cdc48, erad, atpase, transport protein
- 3cg2.pdb.
transferase 04-mar-08 3cg2
Title: p38 alpha kinase complexed with a pyrazolo-pyrimidine based inhibitor
Author: j. s. sack
Keywords: kinase, transferase, p38 map kinase, alternative splicing, atp-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein
- 3cgw.pdb.
transferase 06-mar-08 3cgw
Se
Title: crystal structure of 2-phospho-(s)-lactate transferase from methanosarcina mazei. northeast structural genomics consortium target mar46
Author: f. forouhar, m. abashidze, j. seetharaman, s. m. vorobiev, m. ciao, h. janjua, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, magnesium, transferase
- 3cig.pdb.
immune system 11-mar-08 3cig
Title: crystal structure of mouse tlr3 ectodomain
Author: l. liu, i. botos, y. wang, j. n. leonard, j. shiloach, d. m. segal, d. r. davies
Keywords: innate immunity, tlr, lrr, glycoprotein, immune response, inflammatory response, membrane, receptor, transmembrane, immune system
- 3ciy.pdb.
immune system/rna 12-mar-08 3ciy
Title: mouse toll-like receptor 3 ectodomain complexed with double- stranded rna
Author: l. liu, i. botos, y. wang, j. n. leonard, j. shiloach, d. m. segal, d. r. davies
Keywords: lrr, protein-dsrna complex, innate immunity, tlr, dsrna, glycoprotein, immune response, inflammatory response, leucine-rich repeat, membrane, receptor, transmembrane, immune system/rna complex
- 3cnq.pdb.
hydrolase 26-mar-08 3cnq
Zn
Title: prosubtilisin substrate complex of subtilisin subt_bacam
Author: d. t. gallagher, p. n. bryan
Keywords: proenzyme, substrate complex, calcium, hydrolase, metal-binding, protease, secreted, serine protease, sporulation, zymogen
- 3cph.pdb.
protein transport 31-mar-08 3cph
Mg
Title: crystal structure of sec4 in complex with rab-gdi
Author: s. kravchenko, a. ignatev, r. s. goody, a. rak, o. pylypenko
Keywords: prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, gtp-binding, lipoprotein, membrane, nucleotide-binding, palmitate, phosphoprotein, protein transport, gtpase activation
- 3cpi.pdb.
protein transport 31-mar-08 3cpi
Title: crystal structure of yeast rab-gdi
Author: s. kravchenko, a. ignatev, r. s. goody, a. rak, o. pylypenko
Keywords: gdi, vesicular transport, cytoplasm, gtpase activation, phosphoprotein, protein transport
- 3cpj.pdb.
protein transport 31-mar-08 3cpj
Cl Mg
Title: crystal structure of ypt31 in complex with yeast rab-gdi
Author: s. kravchenko, a. ignatev, r. s. goody, a. rak, o. pylypenko
Keywords: prenylation, vesicular transport, acetylation, golgi apparatus, gtp-binding, lipoprotein, membrane, nucleotide-binding, protein transport, cytoplasm, gtpase activation, phosphoprotein
- 3ct9.pdb.
hydrolase 11-apr-08 3ct9
Cl I Se
Title: crystal structure of a putative zinc peptidase (np_812461.1) from bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: a putative zinc peptidase, peptidase family m20/m25/m40, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
- 3ctp.pdb.
transcription regulator 14-apr-08 3ctp
Na
Title: crystal structure of periplasmic binding protein/laci transcriptional regulator from alkaliphilus metalliredigens qymf complexed with d-xylulofuranose
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: transcription regulation, transcription regulator, psi-2
- 3cu0.pdb.
transferase 15-apr-08 3cu0
Mn
Title: human beta 1,3-glucuronyltransferase i (glcat-i) in complex with udp and gal-gal(6-so4)-xyl(2-po4)-o-ser
Author: y. tone, l. c. pedersen, t. yamamoto, h. kitagawa, j. nishihara- shimizu, j. tamura, m. negishi, k. sugahara
Keywords: glycosyltransferase, heparan sulfate biosynthesis, glycoprotein, golgi apparatus, manganese, membrane, metal- binding, signal-anchor, transmembrane
- 3cu5.pdb.
transcription regulator 15-apr-08 3cu5
Title: crystal structure of a two component transcriptional regulator arac from clostridium phytofermentans isdg
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: crystal structure, protein structure initiative, new york structural genomix research consortium, nysgxrc, transcriptional regulator, arac, transcription regulator, psi-2
- 3cvj.pdb.
structural genomics, unknown function 18-apr-08 3cvj
Mg Se
Title: crystal structure of putative phosphoheptose isomerase (np_244191.1) from bacillus halodurans at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative phosphoheptose isomerase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, structural genomics, unknown function
- 3cvo.pdb.
structural genomics, unknown function 18-apr-08 3cvo
Se
Title: crystal structure of methyltransferase-like protein of unknown function (yp_167254.1) from silicibacter pomeroyi dss-3 at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: methyltransferase-like protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, structural genomics, unknown function
- 3cwf.pdb.
transferase 21-apr-08 3cwf
Title: crystal structure of pas domain of two-component sensor histidine kinase
Author: c. chang, c. tesar, m. gu, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: phosphate transport, phosphoprotein, transferase, transmembrane, transport, two- component regulatory system
- 3cwi.pdb.
biosynthetic protein 21-apr-08 3cwi
Se
Title: crystal structure of thiamine biosynthesis protein (this) from geobacter metallireducens. northeast structural genomics consortium target gmr137
Author: f. forouhar, m. abashidze, j. seetharaman, l. mao, h. janjua, r. xiao, m. maglaqui, c. ciccosanti, e. l. foote, h. wang, j. k. everett, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, biosynthetic protein
- 3cwr.pdb.
transcription regulator 22-apr-08 3cwr
Se
Title: crystal structure of transcriptional regulator of tetr family (yp_425770.1) from rhodospirillum rubrum atcc 11170 at 1.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: transcription regulation, transcription regulator
- 3cwv.pdb.
isomerase 22-apr-08 3cwv
Title: crystal structure of b-subunit of the dna gyrase from myxococcus xanthus
Author: u. a. ramagopal, r. toro, a. j. meyer, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, dna gyrase, b- subunit, atp-binding, isomerase, nucleotide-binding, topoisomerase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cxm.pdb.
hydrolase 24-apr-08 3cxm
Br
Title: leishmania naiffi uracil-dna glycosylase in complex with 5- bromouracil
Author: e. t. larson, e. a. merritt, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: ber, dna damage repair, leishmania, msgpp, sgpp, glycosylase, hydrolase, 5-bromouracil, structural genomics, structural genomics of pathogenic protozoa consortium, dna repair, glycosidase
- 3cyj.pdb.
isomerase 25-apr-08 3cyj
Na
Title: crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from rubrobacter xylanophilus
Author: j. b. bonanno, j. freeman, k. t. bain, f. zhang, j. bravo, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: isomerase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cz5.pdb.
transcription regulator 28-apr-08 3cz5
Title: crystal structure of two-component response regulator, luxr family, from aurantimonas sp. si85-9a1
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: new york structural genomix research consortium, dna-binding, transcription, transcription regulation, transcription regulator
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS