Recent PDB releases or updates: week of 9 October 2009
- 1dll.pdb.
toxin 10-dec-99 1dll
Title: the hc fragement of tetanus toxin complexed with lactose
Author: p. emsley, c. fotinou, i. black, n. f. fairweather, i. g. charles, c. watts, e. hewitt, n. w. isaacs
Keywords: jelly roll, toxin
- 1f3w.pdb.
transferase 06-jun-00 1f3w
Mn K
Title: recombinant rabbit muscle pyruvate kinase
Author: j. o. wooll, r. h. e. friesen, m. a. white, s. j. watowich, r. o. fox, j. c. lee, e. w. czerwinski
Keywords: recombinant, muscle isozyme, transferase
- 1fy4.pdb.
hydrolase 28-sep-00 1fy4
Title: fusarium oxysporum trypsin at atomic resolution
Author: w. r. rypniewski, p. oestergaard, m. noerregaard-madsen, m. dauter, k. s. wilson
Keywords: hydrolase
- 1gwv.pdb.
transferase 26-mar-02 1gwv
Mn
Title: alpha-,1,3 galactosyltransferase - lactose complex
Author: e. boix, y. zhang, g. j. swaminathan, k. brew, k. r. acharya
Keywords: blood group sugars, lactose, n- acetyl lactosamine, transferase, glycosyltransferase
- 1gz9.pdb.
sugar binding protein 17-may-02 1gz9
Mn Ca
Title: high-resolution crystal structure of erythrina cristagalli lectin in complex with 2'-alpha-l-fucosyllactose
Author: c. svensson, s. teneberg, c. l. nilsson, a. kjellberg, f. p. schwarz, n. sharon, u. krengel
Keywords: fucosyllactose, sugar binding protein, protein-carbohydrate interactions, carbohydrate, glycoprotein, legume lectin
- 1gzc.pdb.
sugar binding protein 17-may-02 1gzc
Mn Ca
Title: high-resolution crystal structure of erythrina cristagalli lectin in complex with lactose
Author: c. svensson, u. krengel
Keywords: carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein
- 1i7j.pdb.
rna 09-mar-01 1i7j
Mg
Title: crystal structure of 2'-o-me(cgcgcg)2: an rna duplex at 1.19 a resolution. 2-methyl-2,4-pentanediol and magnesium binding.
Author: d. a. adamiak, w. r. rypniewski, j. milecki, r. w. adamiak
Keywords: 2'-o-merna duplex, 2-methyl-2, 4-pentanediol, magnesium, groove hydration and binding
- 1jyn.pdb.
hydrolase 13-sep-01 1jyn
Mg Na
Title: e. coli (lacz) beta-galactosidase (e537q) in complex with lactose
Author: d. h. juers, b. w. matthews
Keywords: jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase
- 1knm.pdb.
hydrolase 19-dec-01 1knm
Title: streptomyces lividans xylan binding domain cbm13 in complex with lactose
Author: v. notenboom, a. b. boraston, s. j. williams, d. g. kilburn, d. r. rose
Keywords: lectin-like beta trefoil fold, lactose complex, hydrolase
- 1krp.pdb.
transferase/dna 19-aug-97 1krp
Zn
Title: dna polymerase i klenow fragment (e.c.2.7.7.7) mutant/dna complex
Author: c. a. brautigam, t. a. steitz
Keywords: exonuclease, phosphorothioate, transferase/dna complex
- 1ksp.pdb.
transferase/dna 19-aug-97 1ksp
Zn
Title: dna polymerase i klenow fragment (e.c.2.7.7.7) mutant/dna complex
Author: c. a. brautigam, t. a. steitz
Keywords: exonuclease, phosphorothioate, transferase/dna complex
- 1ms0.pdb.
hydrolase 19-sep-02 1ms0
Title: monoclinic form of trypanosoma cruzi trans-sialidase, in complex with 3-deoxy-2,3-dehydro-n-acetylneuraminic acid (dana)and lactose
Author: a buschiazzo, m. f. amaya, m. l. cremona, a. c. frasch, p. m. alzari
Keywords: beta-propeller, protein-carbohydrate interactions, sialidase, hydrolase
- 1ms9.pdb.
hydrolase 19-sep-02 1ms9
Title: triclinic form of trypanosoma cruzi trans-sialidase, in complex with lactose
Author: a. buschiazzo, m. f. amaya, m. l. cremona, a. c. frasch, p. m. alzari
Keywords: trans-glycosylation, protein-acrbohydrate interactions, beta-propeller, hydrolase
- 1o7o.pdb.
transferase 11-nov-02 1o7o
Mn
Title: roles of individual residues of alpha-1,3 galactosyltransferases in substrate binding and catalysis
Author: y. zhang, g. j. swaminathan, a. deshpande, r. natesh, x. xie, k. r. acharya, k. brew
Keywords: glycosyltransferase, glycoprotein
- 1qqs.pdb.
sugar binding protein 07-jun-99 1qqs
Title: neutrophil gelatinase associated lipocalin homodimer
Author: d. h. goetz, s. t. willie, r. armen, t. bratt, n. borregaard, r. k. strong
Keywords: signal protein, glycoprotein, sugar binding protein
- 1rit.pdb.
sugar binding protein 17-nov-03 1rit
Mn Ca
Title: crystal structure of peanut lectin in complex with meso- tetrasulphonatophenylporphyrin and lactose
Author: m. goel, k. j. kaur, b. g. maiya, m. j. swamy, d. m. salunke
- 1se4.pdb.
toxin 16-apr-97 1se4
Title: staphylococcal enterotoxin b complexed with lactose
Author: s. swaminathan, m. sax
Keywords: superantigen, seb, 3d structure, x-ray, lactose, complex
- 1v00.pdb.
sugar binding protein 21-mar-04 1v00
Mn Ca
Title: erythrina cristagalli lectin
Author: k. turton, r. natesh, n. thiyagarajan, j. a. chaddock, k. r. acharya
Keywords: non-canonical dimer, carbohydrate-binding, sugar binding protein
- 1vpd.pdb.
oxidoreductase 22-oct-04 1vpd
Cl Se
Title: x-ray crystal structure of tartronate semialdehyde reductase [salmonella typhimurium lt2]
Author: j. osipiuk, m. zhou, s. moy, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg, protein structure initiative, reductase, tartronate, psi, midwest center for structural genomics, oxidoreductase
- 1vzu.pdb.
transferase 27-may-04 1vzu
Mn
Title: roles of active site tryptophans in substrate binding and catalysis by alpha-1,3 galactosyltransferase
Author: y. zhang, a. deshpande, z. xie, r. natesh, k. r. acharya, k. brew
Keywords: glycosyltransferase, glycoprotein
- 1w25.pdb.
signaling protein 28-jun-04 1w25
Mg Zn
Title: response regulator pled in complex with c-digmp
Author: c. chan, t. schirmer, u. jenal
Keywords: response regulator, diguanylate cyclase, ggdef domain, cyclic dinucleotide, cyclic-digmp, allosteric product inhibition, phosphorylation, signaling protein
- 1w3a.pdb.
toxin/sugar binding protein 14-jul-04 1w3a
Title: three dimensional structure of a novel pore-forming lectin from the mushroom laetiporus sulphureus
Author: j. m. mancheno, h. tateno, i. j. goldstein, m. martinez-ripoll, j. a. hermoso
Keywords: pore-forming toxin, hemolytic lectin, oligomer, beta-trefoil, sugar-binding protein
- 1w6o.pdb.
sugar binding protein 20-aug-04 1w6o
Title: x-ray crystal structure of c2s human galectin-1 complexed with lactose
Author: m. i. f. lopez-lucendo, h. j. gabius, a. romero
Keywords: carbohydrate-binding proteins, galactosides, galectin, sugar binding protein
- 1w8o.pdb.
hydrolase 24-sep-04 1w8o
Na
Title: contribution of the active site aspartic acid to catalysis in the bacterial neuraminidase from micromonospora viridifaciens
Author: s. newstead, j. n. watson, v. dookhun, a. j. bennet, g. taylor
Keywords: glycosidase, hydrolase, sialidase, beta- propeller
- 1wvq.pdb.
structural genomics, unknown function 24-dec-04 1wvq
Title: structure of conserved hypothetical protein pae2307 from pyrobaculum aerophilum
Author: j. s. lott, l. t. delbaere, m. j. banfield, j. a. sigrell-simon, e. n. baker
Keywords: structural genomics, unknown function
- 1xmu.pdb.
hydrolase 04-oct-04 1xmu
Cl Mg F Zn
Title: catalytic domain of human phosphodiesterase 4b in complex with roflumilast
Author: g. l. card, b. p. england, y. suzuki, d. fong, b. powell, b. lee, c. luu, m. tabrizizad, s. gillette, p. n. ibrahim, d. r. artis, g. bollag, m. v. milburn, s. -h. kim, j. schlessinger, k. y. j. zhang
Keywords: pde, pde4b, roflumilast, hydrolase
- 1y2h.pdb.
hydrolase 22-nov-04 1y2h
Cl Mg Zn
Title: catalytic domain of human phosphodiesterase 4b in complex with 1-(2-chloro-phenyl)-3,5-dimethyl-1h-pyrazole-4- carboxylic acid ethyl ester
Author: g. l. card, l. blasdel, b. p. england, c. zhang, y. suzuki, s. gillette, d. fong, p. n. ibrahim, d. r. artis, g. bollag, m. v. milburn, s. -h. kim, j. schlessinger, k. y. j. zhang
Keywords: pde, pde4b, pyrazole, hydrolase
- 1yaj.pdb.
hydrolase 17-dec-04 1yaj
Title: crystal structure of human liver carboxylesterase in complex with benzil
Author: c. d. fleming, s. bencharit, c. c. edwards, j. l. hyatt, c. m. morton, e. l. howard-williams, p. m. potter, m. r. redinbo
Keywords: carboxylesterase, benzil, inhibition
- 1zj0.pdb.
transferase 27-apr-05 1zj0
Cl Hg
Title: crystal structure of human galactosyltransferase (gtb) complexed with lactose
Author: j. a. letts, n. l. rose, y. r. fang, c. h. barry, s. n. borisova, n. o. seto, m. m. palcic, s. v. evans
Keywords: abo(h), h-antigen, blood groups, transferase, retaining
- 2d5r.pdb.
transcription 04-nov-05 2d5r
Title: crystal structure of a tob-hcaf1 complex
Author: m. horiuchi, n. n. suzuki, n. muroya, k. takahasi, m. nishida, y. yoshida, n. ikematsu, t. nakamura, j. kawamura-tsuzuku, t. yamamoto, f. inagaki
Keywords: antiproliferative protein, transcription
- 2e85.pdb.
hydrolase 18-jan-07 2e85
Ca
Title: crystal structure of the hydrogenase 3 maturation protease
Author: t. tanaka, t. s. kumarevel, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: maturation, protease, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, hydrolase
- 2eum.pdb.
lipid transport 28-oct-05 2eum
Title: crystal structure of human glycolipid transfer protein complexed with 8:0 lactosylceramide
Author: l. malinina, m. l. malakhova, a. t. kanack, r. abagyan, r. e. brown, d. j. patel
Keywords: lipid transport
- 2evd.pdb.
lipid transport 31-oct-05 2evd
Title: crystal structure of human glycolipid transfer protein complexed with 12:0 lactosylceramide
Author: l. malinina, m. l. malakhova, a. t. kanack, r. abagyan, r. e. brown, d. j patel
Keywords: lipid transport
- 2f14.pdb.
lyase 14-nov-05 2f14
Hg Zn
Title: tne crystal structure of the human carbonic anhydrase ii in complex with a fluorescent inhibitor
Author: v. alterio, c. pedone, g. de simone
Keywords: lyase
- 2gkl.pdb.
hydrolase 03-apr-06 2gkl
Zn
Title: crystal structure of the zinc carbapenemase cpha in complex with the inhibitor pyridine-2,4-dicarboxylate
Author: g. garau, o. dideberg
Keywords: lactamase, inhibitor, zn
- 2h0a.pdb.
transcription 14-may-06 2h0a
Title: crystal structure of probable transcription regulator from thermus thermophilus
Author: t. s. kumarevel, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: regulator, repressor, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2ihz.pdb.
transferase 27-sep-06 2ihz
F
Title: crystal structure of multifunctional sialyltransferase from pasteurella multocida with cmp-3f-neu5ac and alpha-lactose bound
Author: a. j. fisher, l. ni
Keywords: alpha-lactose, two rossmann domain
- 2ilv.pdb.
transferase 03-oct-06 2ilv
Title: crystal structure of multifunctional sialyltransferase from pasteurella multocida with cmp and alpha-lactose bound
Author: a. j. fisher, l. ni
Keywords: cmp, alpha-lactose, two rossmann domains
- 2iy8.pdb.
transferase 13-jul-06 2iy8
F Se
Title: crystal structure of the sialyltransferase pm0188 with cmp- 3fneuac and lactose
Author: d. u. kim, h. s. cho
Keywords: pm0188, sialyltransferase, cmp-3fneuac, lactose, hypothetical protein
- 2k8g.pdb.
translation 09-sep-08 2k8g
(solution NMR)
Title: solution structure of rrm2 domain of pabp1
Author: i. barsukov, s. parnham
Keywords: alternative splicing, cytoplasm, methylation, mrna processing, mrna splicing, nucleus, phosphoprotein, rna- binding, spliceosome, translation
- 2kb5.pdb.
hydrolase 20-nov-08 2kb5
(solution NMR)
Title: solution nmr structure of eosinophil cationic protein/rnase 3
Author: m. rico, m. bruix, d. v. laurents, j. santoro, m. jimenez, e. boix, m. moussaoui, m. nogues
Keywords: antibiotic, antimicrobial, endonuclease, glycoprotein, hydrolase, polymorphism
- 2ke4.pdb.
membrane protein 22-jan-09 2ke4
(solution NMR)
Title: the nmr structure of the tc10 and cdc42 interacting domain of cip4
Author: h. kumeta, d. kanoh, y. kobashigawa, f. inagaki
Keywords: membrane protein
- 2kep.pdb.
transport protein 02-feb-09 2kep
(solution NMR)
Title: solution structure of xcpt, the main component of the type 2 secretion system of pseudomonas aeruginosa
Author: s. alphonse, e. durand, b. douzi, h. darbon, a. filloux, r. voulhoux, c. bernard
Keywords: transport, transport protein
- 2kfj.pdb.
signaling protein 22-feb-09 2kfj
(solution NMR)
Title: solution structure of the loop deletion mutant of pb1 domain of cdc24p
Author: k. ogura, t. tandai, s. yoshinaga, y. kobashigawa, h. kumeta, f. inagaki
Keywords: cdc24p, yeast, guanine-nucleotide releasing factor, phosphoprotein, signaling protein
- 2kfk.pdb.
signaling protein 23-feb-09 2kfk
(solution NMR)
Title: solution structure of bem1p pb1 domain complexed with cdc24p pb1 domain
Author: y. kobashigawa, s. yoshinaga, t. tandai, k. ogura, f. inagaki
Keywords: budding, yeast, phox, signaling protein
- 2kid.pdb.
protein binding,hydrolase 01-may-09 2kid
Ca
(solution NMR)
Title: solution structure of the s. aureus sortase a-substrate complex
Author: n. suree, c. k. liew, v. a. villareal, w. thieu, e. a. fadeev, j. j. clemens, m. e. jung, r. t. clubb
Keywords: eight stranded beta barrel, transpeptidase, enzyme- substrate complex, solution nmr, protein binding,hydrolase
- 2kiv.pdb.
signaling protein 12-may-09 2kiv
(solution NMR)
Title: aida-1 sam domain tandem
Author: l. w. donaldson, a. kurabi
Keywords: tandem, signaling protein, alternative splicing, ank repeat, cell junction, cell membrane, cell projection, cytoplasm, membrane, nucleus, phosphoprotein, postsynaptic cell membrane, synapse
- 2kja.pdb.
toxin 26-may-09 2kja
(solution NMR)
Title: chemical shift assignments, constraints, and coordinates for cn5 scorpion toxin
Author: a. prochnicka-chalufour, g. corzo, b. i. garcia, l. d. possani, m. delepierre
Keywords: scorpion toxin, centruroides noxius, centruroides suffusus suffusus, na +channel inhibitor, disulfide bond, ionic channel inhibitor, neurotoxin, secreted, sodium channel inhibitor, toxin
- 2kkm.pdb.
translation 26-jun-09 2kkm
(solution NMR)
Title: solution nmr structure of yeast protein yor252w [residues 38-178]: northeast structural genomics consortium target yt654
Author: j. r. cort, a. yee, c. liu, c. h. arrowsmith, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: nucleus, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2kkn.pdb.
structural genomics, unknown function 26-jun-09 2kkn
(solution NMR)
Title: solution nmr structure of themotoga maritima protein tm1076: northeast structural genomics consortium target vt57
Author: j. r. cort, a. yee, m. garcia, n. g. isern, c. h. arrowsmith, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi- 2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
- 2kld.pdb.
membrane protein 01-jul-09 2kld
(solution NMR)
Title: solution structure of the calcium binding domain of the c- terminal cytosolic domain of polycystin-2
Author: h. r. kalbitzer
Keywords: membrane protein
- 2kle.pdb.
membrane protein 01-jul-09 2kle
(solution NMR)
Title: isic refined solution structure of the calcium binding domain of the c-terminal cytosolic domain of polycystin-2
Author: h. r. kalbitzer
Keywords: membrane protein
- 2klf.pdb.
transport protein 02-jul-09 2klf
(solution NMR)
Title: pere nmr structure of maltodextrin-binding protein
Author: t. madl, w. bermel, k. zangger
Keywords: nmr, paramagnetic relaxation, gd(dtpa-bma), periplasm, sugar transport, transport, transport protein
- 2klg.pdb.
signaling protein 02-jul-09 2klg
(solution NMR)
Title: pere nmr structure of ubiquitin
Author: t. madl, w. bermel, k. zangger
Keywords: nmr, paramagnetic relaxation, gd(dtpa-bma), cytoplasm, isopeptide bond, nucleus, phosphoprotein, ubl conjugation, signaling protein
- 2klj.pdb.
structural protein 06-jul-09 2klj
(solution scattering; solution NMR)
Title: solution structure of gammad-crystallin with rdc and saxs
Author: j. wang, x. zuo, p. yu, i. byeon, j. jung, a. m. gronenborn, y. wang
Keywords: 3d structure, rdc, saxs, cataract, disease mutation, eye lens protein, oxidation, polymorphism, sensory transduction, vision, structural protein
- 2klk.pdb.
immune system 06-jul-09 2klk
(solution scattering; solution NMR)
Title: solution structure of gb1 a34f mutant with rdc and saxs
Author: j. wang, x. zuo, p. yu, i. l. byeon, j. jung, c. d. schwieters, a. m. gronenborn, y. wang
Keywords: rdc, saxs, protein binding, immune system
- 2klm.pdb.
ribosomal protein 06-jul-09 2klm
(solution scattering; solution NMR)
Title: solution structure of l11 with saxs and rdc
Author: j. wang, x. zuo, p. yu, c. d. schwieters, y. wang
Keywords: rdc, saxs, ribosomal protein
- 2klv.pdb.
membrane protein 08-jul-09 2klv
(solution NMR)
Title: membrane-bound structure of the pf1 major coat protein in dhpc micelle
Author: s. park, w. son, r. mukhopadhyay, h. valafar, s. j. opella
Keywords: alignment, alpha helix, capsid protein, membrane, transmembrane, virion
- 2klw.pdb.
de novo protein 09-jul-09 2klw
(solution NMR)
Title: solution structure of an abc collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions
Author: j. a. fallas, v. gauba, j. d. hartgerink
Keywords: synthetic peptide, heterotrimer, de novo protein
- 2kmc.pdb.
cell adhesion 27-jul-09 2kmc
(solution NMR)
Title: solution structure of the n-terminal domain of kindlin-1
Author: b. t. goult, n. bate, g. c. roberts, i. l. barsukov, d. r. critchley
Keywords: cytoskeleton, integrin, nmr, n-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection, cytoplasm, membrane, phosphoprotein
- 2kmj.pdb.
rna/peptide 30-jul-09 2kmj
(solution NMR)
Title: high resolution nmr solution structure of a complex of hiv-2 tar rna and a synthetic tripeptide in a 1:2 stoichiometry
Author: j. ferner, m. suhartono, s. breitung, h. r. a. jonker, m. hennig, j. woehnert, m. goebel, h. schwalbe
Keywords: binding stoichiometry, hiv-2 tar, rna/peptide complex
- 2kmw.pdb.
structural genomics, unknown function 05-aug-09 2kmw
(solution NMR)
Title: solution structure of at3g03773.1 protein from arabidopsis thaliana
Author: s. c. sahu, s. singh, m. tonelli, j. l. markley, center for eukaryotic structural genomics (cesg)
Keywords: psi-2, center for eukaryotic structural genomics, cesg, structural genomics, alternative splicing, unknown function
- 2knh.pdb.
transcription regulator 25-aug-09 2knh
(solution NMR)
Title: the solution structure of the etafh domain of aml1-eto complexed with heb peptide
Author: s. park, t. cierpicki, m. tonelli, j. h. bushweller
Keywords: developmental protein, phosphoprotein, transcription regulator
- 2ko7.pdb.
isomerase 11-sep-09 2ko7
(solution NMR)
Title: solution structure of peptidyl-prolyl cis-trans isomerase from burkholderia pseudomallei complexed with cycloheximide-n-ethylethanoate
Author: s. zheng, t. leeper, g. varani
Keywords: fkbp, cycloheximide-n-ethylethanoate, nmr, complex, isomerase, rotamase, structural genomics, ssgcid, seattle structural genomics center for infectious disease
- 2koe.pdb.
membrane protein, signaling protein 18-sep-09 2koe
(solution NMR)
Title: human cannabinoid receptor 1 - helix 7/8 peptide
Author: l. deshmukh, o. vinogradova, a. makriyannis, e. tiburu, s. tyukhtenko, d. janero
Keywords: hcb1, membrane protein, signaling protein
- 2nn8.pdb.
sugar binding protein 24-oct-06 2nn8
Cl
Title: crystal structure of human galectin-3 carbohydrate- recognition domain with lactose bound, at 1.35 angstrom resolution
Author: h. blanchard, p. m. collins
Keywords: sugar binding protein
- 2o0t.pdb.
lyase 28-nov-06 2o0t
Title: the three dimensional structure of diaminopimelate decarboxylase from mycobacterium tuberculosis reveals a tetrameric enzyme organisation
Author: s. weyand, g. kefala, m. s. weiss, tb structural genomics consortium (tbsgc)
Keywords: decarboxylase, lysine biosynthesis, structural genomics, tb structural genomics consortium, tbsgc, lyase
- 2pel.pdb.
lectin (agglutinin) 23-aug-95 2pel
Mn Ca
Title: peanut lectin
Author: r. banerjee, k. das, r. ravishankar, k. suguna, a. surolia, m. vijayan
Keywords: open quaternary structure, carbohydrate specificity, protein crystallography, agglutinin, lectin (agglutinin)
- 2py4.pdb.
hydrolase 15-may-07 2py4
Mg
Title: full length structure of the mycobacterium tuberculosis dutpase complexed with magnesium and alpha,beta-imido-dutp.
Author: o. barabas, n. nagy, e. takacs, b. g. vertessy
Keywords: enzyme-ligand complex, hydrolase
- 2pz9.pdb.
transcription 17-may-07 2pz9
Se
Title: crystal structure of putative transcriptional regulator sco4942 from streptomyces coelicolor
Author: e. v. filippova, m. chruszcz, x. xu, h. zheng, m. cymborowski, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, streptomyces coelicolor a3(2), psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2q24.pdb.
transcription 25-may-07 2q24
Cl Se
Title: crystal structure of tetr transcriptional regulator sco0520 from streptomyces coelicolor
Author: m. cymborowski, m. chruszcz, k. d. koclega, e. v. filippova, x. xu, j. gu, a. savchenko, a. m. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2qnu.pdb.
structural genomics, unknown function 19-jul-07 2qnu
Se
Title: crystal structure of pa0076 from pseudomonas aeruginosa pao1 at 2.05 a resolution
Author: e. v. filippova, m. chruszcz, t. skarina, o. kagan, m. cymborowski, a. savchenko, a. m. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: pseudomonas aeruginosa pa01, uncharacterized protein, unknown function, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2rde.pdb.
structural genomics, unknown function 22-sep-07 2rde
Title: crystal structure of vca0042 complexed with c-di-gmp
Author: j. benach, s. s. swaminathan, r. tamayo, j. seetharaman, s. handelman, f. forouhar, h. neely, a. camilli, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: vibrio cholerae, vca0042, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
- 2v0n.pdb.
lyase 15-may-07 2v0n
Cl Mg F Be
Title: activated response regulator pled in complex with c-digmp and gtp-alpha-s
Author: p. wassmann, t. schirmer
Keywords: nucleotidyl cyclase, ggdef domain, cyclic-digmp, metal-binding, two-component regulatory system
- 2w2h.pdb.
rna-binding protein 30-oct-08 2w2h
Mn
Title: structural basis of transcription activation by the cyclin t1-tat-tar rna complex from eiav
Author: k. anand, m. geyer
Keywords: tar, tat, cyclin, nucleus, activator, cyclin t1, host-virus interaction, transcription regulation, cell cycle, rna-binding, acetylation, coiled coil, transcription, cell division, crystallization
- 2waa.pdb.
hydrolase 04-feb-09 2waa
Title: structure of a family two carbohydrate esterase from cellvibrio japonicus
Author: c. montainer, v. a. money, v. m. r. pires, j. e. flint, b. a. pinheiro, a. goyal, j. a. m. prates, a. izumi, h. stalbrand, k. kolenova, e. topakas, e. j. dodson, d. n. bolam, g. j. davies, c. m. g. a. fontes, h. j. gilbert
Keywords: plant cell wall degradation, esterase, hydrolase, cellulases
- 2wab.pdb.
hydrolase 04-feb-09 2wab
I
Title: structure of an active site mutant of a family two carbohydrate esterase from clostridium thermocellum in complex with celluohexase
Author: c. montainer, v. a. money, v. m. r. pires, j. e. flint, b. a. pinheiro, a. goyal, j. a. m. prates, a. izumi, h. stalbrand, k. kolenova, e. topakas, e. j. dodson, d. n. bolam, g. j. davies, c. m. g. a. fontes, h. j. gilbert
Keywords: carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases, glycosidase, carbohydrate binding, cellulose degradation
- 2wam.pdb.
unknown function 09-feb-09 2wam
Title: crystal structure of mycobacterium tuberculosis unknown function protein rv2714
Author: m. bellinzoni, m. grana, a. buschiazzo, i. miras, a. haouz, p. m. alzari
- 2wao.pdb.
hydrolase 10-feb-09 2wao
Title: structure of a family two carbohydrate esterase from clostridium thermocellum in complex with cellohexaose
Author: c. montainer, v. a. money, v. m. r. pires, j. e. flint, b. a. pinheiro, a. goyal, j. a. m. prates, a. izumi, h. stalbrand, k. kolenova, e. topakas, e. j. dodson, d. n. bolam, g. j. davies, c. m. g. a. fontes, h. j. gilbert
Keywords: carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases, glycosidase, carbohydrate binding, cellulose degradation
- 2wau.pdb.
membrane protein 16-feb-09 2wau
Title: structure of dbl6 epsilon domain from var2csa
Author: p. khunrae, m. k. higgins
Keywords: chondroitin sulphate a, membrane protein dbl, pfemp1, malaria, var2csa
- 2wgp.pdb.
hydrolase 22-apr-09 2wgp
Title: crystal structure of human dual specificity phosphatase 14
Author: g. t. lountos, j. e. tropea, s. cherry, d. s. waugh
Keywords: dusp14, hydrolase, protein phosphatase, dual specificity phosphatase
- 2wie.pdb.
hydrolase 11-may-09 2wie
Title: high-resolution structure of the rotor ring from a proton dependent atp synthase
Author: d. pogoryelov, o. yildiz, j. d. faraldo-gomez, t. meier
Keywords: f1fo atp synthase rotor, ion proton-translocation, ion transport, transmembrane, c-ring structure, spirulina platensis, hydrogen ion transport, membrane protein complex, cf(0), membrane, lipid-bindin...
- 2wm4.pdb.
oxidoreductase 30-jun-09 2wm4
Fe Ca
Title: biochemical and structural characterization of cyp124: a methyl-branched lipid omega-hydroxylase from mycobacterium tuberculosis
Author: j. b. johnston, p. m. kells, l. m. podust, p. r. ortiz de montellano
Keywords: oxidoreductase, omega-hydroxylation, p450, iron, heme, fatty acid, monooxygenase
- 2wm5.pdb.
oxidoreductase 30-jun-09 2wm5
Fe
Title: biochemical and structural characterization of cyp124: a methyl-branched lipid omega-hydroxylase from mycobacterium tuberculosis
Author: j. b. johnston, p. m. kells, l. m. podust, p. r. ortiz de montellano
Keywords: oxidoreductase, omega-hydroxylation, p450, iron, heme, fatty acid, monooxygenase
- 2wp1.pdb.
transcription/peptide 02-aug-09 2wp1
Title: structure of brdt bromodomain 2 bound to an acetylated histone h3 peptide
Author: j. moriniere, s. rousseaux, u. steuerwald, m. soler-lopez, s. curtet, a. -l. vitte, j. govin, j. gaucher, k. sadoul, d. j. hart, j. krijgsveld, s. khochbin, c. w. mueller, c. petosa
Keywords: transcription regulation, acetyllysine, brdt, nucleus, coiled coil, bromodomain, chromosomal protein, nucleosome
- 2wp2.pdb.
transcription/peptide 02-aug-09 2wp2
Title: structure of brdt bromodomain bd1 bound to a diacetylated histone h4 peptide.
Author: j. moriniere, s. rousseaux, u. steuerwald, m. soler-lopez, s. curtet, a. -l. vitte, j. govin, j. gaucher, k. sadoul, d. j. hart, j. krijgsveld, s. khochbin, c. w. mueller, c. petosa
Keywords: transcription regulation, acetyllysine, brdt, nucleus, coiled coil, bromodomain, chromosomal protein, nucleosome
- 2wqi.pdb.
transcription 21-aug-09 2wqi
Title: crystal structure of the human p73 tetramerization domain
Author: a. c. joerger
Keywords: development
- 2wqj.pdb.
transcription 21-aug-09 2wqj
Title: crystal structure of a truncated variant of the human p73 tetramerization domain
Author: a. c. joerger
Keywords: cell cycle, development
- 2wr9.pdb.
sugar binding protein 01-sep-09 2wr9
Ca
Title: crystal structure of burkholderia cenocepacia lectin (bcla) complexed with aman1-3man disaccharide
Author: e. lameignere, t. c. shiao, r. roy, m. wimmerova, f. dubreuil, a. varrot, a. imberty
Keywords: bacterial lectin, oligosaccharides
- 2wra.pdb.
sugar binding protein 01-sep-09 2wra
Ca
Title: bcla lectin from burkholderia cenocepacia complexed with aman1(aman1-6)-3man trisaccharide
Author: e. lameignere, t. c. shiao, r. roy, m. wimmerova, f. dubreuil, a. varrot, a. imberty
Keywords: bacterial lectin, oligosaccharides
- 2wu1.pdb.
hydrolase 25-sep-09 2wu1
Title: glucosamine-6-phosphate deaminase complexed with the allosteric activator n-acetyl-glucoamine-6-phosphate both in the active and allosteric sites.
Author: e. rudino-pinera, s. p. rojas-trejo, e. horjales
Keywords: carbohydrate metabolism, aldose-ketose isomerase, hydrolase, disulfide bond, entropic effects
- 2z0d.pdb.
hydrolase/structural protein 07-may-07 2z0d
Title: the crystal structure of human atg4b- lc3(1-120) complex
Author: k. satoo, n. n. noda, f. inagaki
Keywords: ubiquitin fold, hydrolase/structural protein complex
- 2z0e.pdb.
hydrolase/structural protein 07-may-07 2z0e
Title: the crystal structure of human atg4b- lc3(1-124) complex
Author: k. satoo, n. n. noda, f. inagaki
Keywords: ubiquitin fold, hydrolase/structural protein complex
- 2zvt.pdb.
transcription 19-nov-08 2zvt
Title: cys285ser mutant ppargamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin j2
Author: t. waku, t. oyama, t. shiraki, k. morikawa
Keywords: zinc, zinc-finger
- 2zwr.pdb.
hydrolase 17-dec-08 2zwr
Zn
Title: crystal structure of ttha1623 from thermus thermophilus hb8
Author: a. yamamura, a. okada, y. kameda, j. ohtsuka, n. nakagawa, a. ebihara, s. yokoyama, s. kuramitsu, k. nagata, m. tanokura
Keywords: hydrolase
- 2zzl.pdb.
proton transport 18-feb-09 2zzl
Title: structure of bacteriorhodopsin's m intermediate at ph 7
Author: m. yamamoto, t. kouyama
Keywords: sensory transduction, transmembrane, transport, proton transport
- 2zzp.pdb.
hydrolase/structural protein 22-feb-09 2zzp
Title: the crystal structure of human atg4b(c74s)- lc3(1-124) complex
Author: k. satoo, n. n. noda, f. inagaki
Keywords: cytoplasmic vesicle, lipoprotein, membrane, microtubule, hydrolase/structural protein complex
- 3a07.pdb.
antiviral protein 04-mar-09 3a07
Na
Title: crystal structure of actinohivin; potent anti-hiv protein
Author: m. tsunoda, k. suzuki, t. sagara, a. takenaka
Keywords: antiviral protein, lectin
- 3a24.pdb.
hydrolase 28-apr-09 3a24
Ca
Title: crystal structure of bt1871 retaining glycosidase
Author: m. okuyama, m. kitamura, h. hondoh, i. tanaka, m. yao
Keywords: retaining glycosidase
- 3a29.pdb.
hydrolase 08-may-09 3a29
Title: crystal structure of human liver fbpase in complex with tricyclic inhibitor
Author: m. takahashi, j. sone, h. hanzawa
Keywords: allosteric enzyme, carbohydrate metabolism, disease mutation, gluconeogenesis, magnesium, metal- binding, polymorphism
- 3a43.pdb.
metal binding protein 30-jun-09 3a43
Zn
Title: crystal sructure of hypa
Author: s. watanabe, t. arai, r. matsumi, h. aromi, t. imanaka, k. miki
Keywords: zinc-finger, nickel binding, metal-binding, nickel, metal binding protein
- 3a44.pdb.
metal binding protein 30-jun-09 3a44
Zn
Title: crystal structure of hypa in the dimeric form
Author: s. watanabe, t. arai, r. matsumi, h. atomi, t. imanaka, k. miki
Keywords: zinc-finger, nickel binding, domain swapping, metal-binding, nickel, metal binding protein
- 3bdc.pdb.
hydrolase 14-nov-07 3bdc
Ca
Title: crystal structure of staphylococcal nuclease variant delta+phs at cryogenic temperature
Author: v. khangulov, j. l. schlessman, b. e. garcia-moreno
Keywords: hyperstable variant, hydrolase, pdtp
- 3bl7.pdb.
hydrolase 10-dec-07 3bl7
F
Title: synthetic gene encoded dcps bound to inhibitor dg156844
Author: b. l. staker, j. christensen, l. stewart, accelerated technologies center for gene to 3d structure (atcg3d)
Keywords: accelerated technologies center for gene to 3d structure, atcg3d
- 3bl9.pdb.
hydrolase 10-dec-07 3bl9
Cl
Title: synthetic gene encoded dcps bound to inhibitor dg157493
Author: b. l. staker, j. christensen, l. stewart, accelerated technologies center for gene to 3d structure (atcg3d)
Keywords: accelerated technologies center for gene to 3d structure, atcg3d
- 3bla.pdb.
hydrolase 10-dec-07 3bla
Cl
Title: synthetic gene encoded dcps bound to inhibitor dg153249
Author: b. l. staker, j. christensen, l. stewart, accelerated technologies center for gene to 3d structure (atcg3d)
Keywords: accelerated technologies center for gene to 3d structure, atcg3d
- 3bre.pdb.
signaling protein 21-dec-07 3bre
Mg
Title: crystal structure of p.aeruginosa pa3702
Author: n. de, m. pirruccello, p. v. krasteva, n. bae, r. v. raghavan, h. sondermann
Keywords: signaling protein
- 3ca4.pdb.
sugar binding protein, plant protein 19-feb-08 3ca4
Title: sambucus nigra agglutinin ii, tetragonal crystal form- complexed to lactose
Author: l. maveyraud, l. mourey
Keywords: ricin-b domain, glycosylation, lactose, glycoprotein, lectin, sugar binding protein, plant protein
- 3cni.pdb.
transport protein 25-mar-08 3cni
Ca Se
Title: crystal structure of a domain of a putative abc type-2 transporter from thermotoga maritima msb8
Author: e. v. filippova, i. shumilin, k. tkaczuk, m. cymborowski, m. chruszcz, x. xu, q. que, a. savchenko, a. m. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: abc type-2 transporter, thermotoga maritima, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, transport protein
- 3cnv.pdb.
transcription regulator 26-mar-08 3cnv
Cl Se
Title: crystal structure of the ligand-binding domain of a putative gntr-family transcriptional regulator from bordetella bronchiseptica
Author: m. d. zimmerman, x. xu, h. cui, e. v. filippova, a. savchenko, a. m. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: transcription regulator
- 3dkc.pdb.
oncoprotein 24-jun-08 3dkc
Cl Mg
Title: sgx clone 5698a65kfg1h1
Author: j. hendle
Keywords: c-met kinase, fragment based, membrane, receptor, transmembrane, oncoprotein
- 3dkf.pdb.
oncoprotein 24-jun-08 3dkf
Cl
Title: sgx clone 5698a65kfg1h1
Author: j. hendle
Keywords: c-met kinase, fragment based, membrane, receptor, transmembrane, oncoprotein
- 3dkg.pdb.
oncoprotein 24-jun-08 3dkg
Cl
Title: sgx clone 5698a109kfg1h1
Author: j. hendle
Keywords: c-met kinase, fragment based, membrane, receptor, transmembrane, oncoprotein
- 3dxt.pdb.
oxidoreductase, nuclear protein 25-jul-08 3dxt
Zn
Title: crystal structure of the catalytic core domain of jmjd2d
Author: z. chen, g. zhang
Keywords: transcription regulation, zinc, nuclear protein
- 3e4d.pdb.
hydrolase 11-aug-08 3e4d
Cl Mg Se
Title: structural and kinetic study of an s-formylglutathione hydrolase from agrobacterium tumefaciens
Author: k. e. van straaten, c. f. gonzalez, r. b. valladares, x. xu, a. v. savchenko, d. a. r. sanders
Keywords: hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism
- 3ecy.pdb.
hydrolase 02-sep-08 3ecy
Title: crystal structural analysis of drosophila melanogaster dutpase
Author: e. takacs, o. barabas, b. g. vertessy
Keywords: dimeric assembly, hydrolase
- 3eim.pdb.
hydrolase 16-sep-08 3eim
Cu Ca
Title: metal exchange in thermolysin
Author: l. englert, a. heine, g. klebe
Keywords: calcium, hydrolase, metal-binding, metalloprotease, protease, secreted, zinc, zymogen
- 3ejc.pdb.
viral protein, sugar binding protein 18-sep-08 3ejc
Title: full length receptor binding protein from lactococcal phage tp901-1
Author: s. spinelli, j. lichiere, s. blangy, g. sciara, c. cambillau, v. campanacci
Keywords: siphoviridae, receptor binding protein, phage tp901-1, p335 species, viral protein, sugar binding protein
- 3eod.pdb.
signaling protein 26-sep-08 3eod
Title: crystal structure of n-terminal domain of e. coli rssb
Author: i. levchenko, r. a. grant, r. t. sauer, t. a. baker
Keywords: phosphoprotein, two-component regulatory system, signaling protein
- 3eok.pdb.
transport protein 28-sep-08 3eok
Fe
Title: crystal structure determination of duck (anas platyrhynchos) hemoglobin at 2.1 angstrom resolution
Author: p. sathya moorthy, k. neelagandan, m. balasubramanian, m. n. ponnuswamy
Keywords: avian species, quaternary structure, heme, iron, metal-binding, oxygen transport, transport, transport protein
- 3eyc.pdb.
transport protein 20-oct-08 3eyc
Title: new crystal structure of human tear lipocalin in complex with 1,4-butanediol in space group p21
Author: d. a. breustedt, l. keil, a. skerra
Keywords: ligand-binding protein, beta-barrel, secreted, sensory transduction, taste, transport
- 3f01.pdb.
metal binding protein 24-oct-08 3f01
Cu
Title: crystal structure of synaptotagmin i c2a domain with cu(ii)
Author: f. guo, r. dakshinamurthy, s. k. k. thallapuranam, j. sakon
Keywords: c2a, copper, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding, palmitate, phosphoprotein, synapse, transmembrane, metal binding protein
- 3f05.pdb.
metal binding protein 24-oct-08 3f05
Mn
Title: crystal structure of synaptotagmin i c2a domain with mn(ii)
Author: f. guo, r. dakshinamurthy, s. k. k. thallapuranam, j. sakon
Keywords: c2a, mn, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding, palmitate, phosphoprotein, synapse, transmembrane, metal binding protein
- 3f0a.pdb.
transferase 24-oct-08 3f0a
Cl Ni Se
Title: structure of a putative n-acetyltransferase (ta0374) in complex with acetyl-coa from thermoplasma acidophilum
Author: e. v. filippova, g. minasov, l. shuvalova, o. kiryukhina, s. clancy, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: thermoplasma acidophilum, acetyl-coa, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 3f0q.pdb.
oxidoreductase 25-oct-08 3f0q
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-(2,6- dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
- 3f0s.pdb.
oxidoreductase 25-oct-08 3f0s
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-(3,5- dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
- 3f0v.pdb.
oxidoreductase 26-oct-08 3f0v
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-(2, 6-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
- 3f0x.pdb.
oxidoreductase 27-oct-08 3f0x
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-(3, 5-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
- 3f8e.pdb.
lyase 12-nov-08 3f8e
Hg Zn
Title: coumarins are a novel class of suicide carbonic anhydrase inhibitors
Author: c. temperini, a. maresca, a. scozzafava, c. t. supuran
Keywords: inhibitors, crystal structure, acetylation, cytoplasm, disease mutation, lyase, metal- binding, polymorphism, zinc
- 3f9o.pdb.
hydrolase 14-nov-08 3f9o
Cl Zn
Title: crystal structure of the di-zinc carbapenemase cpha from aeromonas hydrophila
Author: h. delbruck, k. m. v. hoffmann
Keywords: antibiotic resistance, metal-binding, periplasm, zinc
- 3fah.pdb.
oxidoreductase 17-nov-08 3fah
Cl Mg Mo Fe
Title: glycerol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas
Author: t. santos-silva, m. j. romao
Keywords: 2fe-2s, fad, flavoprotein, iron, iron- sulfur, metal-binding, molybdenum, nad, oxidoreductase
- 3fai.pdb.
hydrolase 17-nov-08 3fai
Cl Zn
Title: the di zinc carbapenemase cpha n220g mutant
Author: h. delbruck, k. m. v. hoffmann
Keywords: antibiotic resistance, metal-binding, periplasm, zinc
- 3fc4.pdb.
oxidoreductase 21-nov-08 3fc4
Cl Mg Mo Fe
Title: ethylene glycol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas
Author: t. santos-silva, m. j. romao
Keywords: 2fe-2s, fad, flavoprotein, iron, iron-sulfur, metal-binding, molybdenum, nad, oxidoreductase
- 3fex.pdb.
translation, protein transport 01-dec-08 3fex
Title: crystal structure of the cbc-importin alpha complex.
Author: s. m. g. dias, a. l. b. ambrosio, r. a. cerione
Keywords: importin alpha, nuclear transport, coiled coil, mrna transport, nucleus, phosphoprotein, rna- binding, acetylation, cytoplasm, host-virus interaction, translation, protein transport
- 3fey.pdb.
translation, protein transport 01-dec-08 3fey
Title: crystal structure of the cbc-importin alpha complex.
Author: s. m. g. dias, a. l. b. ambrosio, r. a. cerione
Keywords: importin alpha, nuclear transport, coiled coil, mrna transport, nucleus, phosphoprotein, rna- binding, acetylation, cytoplasm, host-virus interaction, translation, protein transport
- 3ffa.pdb.
signaling protein 02-dec-08 3ffa
Mg
Title: crystal structure of a fast activating g protein mutant
Author: r. chauhan, n. kapoor
Keywords: gtp-binding, lipoprotein, myristate, nucleotide-binding, palmitate, transducer, signal transduction, signaling protein
- 3ffb.pdb.
signaling protein 02-dec-08 3ffb
Title: gi-alpha-1 mutant in gdp bound form
Author: r. chauhan, n. kapoor
Keywords: gtp-binding, lipoprotein, myristate, nucleotide-binding, palmitate, transducer, signal transduction, signaling protein
- 3ffk.pdb.
structural protein 03-dec-08 3ffk
Ca
Title: crystal structure of human gelsolin domains g1-g3 bound to actin
Author: s. chumnarnsilpa, r. c. robinson, l. d. burtnick
Keywords: actin, ca-dependent, ca-activated, contractile protein, structural protein
- 3ffn.pdb.
actin binding protein 04-dec-08 3ffn
Title: crystal structure of calcium-free human gelsolin
Author: s. chumnarnsilpa, r. c. robinson, l. d. burtnick
Keywords: secreted, actin binding protein
- 3fg6.pdb.
actin-binding protein 05-dec-08 3fg6
Ca
Title: structure of the c-terminus of adseverin
Author: r. c. robinson
Keywords: actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, phosphoprotein, actin-binding protein
- 3fgm.pdb.
hormone 06-dec-08 3fgm
Title: crystal structure of l44f/c83t/c117v/f132w mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fgx.pdb.
structural genomics, unknown function 08-dec-08 3fgx
Title: structure of uncharacterised protein rbstp2171 from bacillus stearothermophilus
Author: g. minasov, e. v. filippova, l. shuvalova, s. moy, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, structural genomics, unknown function
- 3fix.pdb.
transferase 12-dec-08 3fix
Se
Title: crystal structure of a putative n-acetyltransferase (ta0374) from thermoplasma acidophilum
Author: e. v. filippova, g. minasov, l. shuvalova, o. kiryukhina, s. clancy, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: termoplasma acidophilum, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 3fj8.pdb.
hormone 14-dec-08 3fj8
Title: crystal structure of c117i mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fj9.pdb.
hormone 14-dec-08 3fj9
Title: crystal structure of f85w mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fja.pdb.
hormone 14-dec-08 3fja
Title: crystal structure of f132w mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjb.pdb.
hormone 14-dec-08 3fjb
Title: crystal structure of v31i mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjc.pdb.
hormone 14-dec-08 3fjc
Title: crystal structure of l44w mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjd.pdb.
hormone 14-dec-08 3fjd
Title: crystal structure of l44f/f132w mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fje.pdb.
hormone 14-dec-08 3fje
Title: crystal structure of c83s mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjf.pdb.
hormone 14-dec-08 3fjf
Title: crystal structure of c83t mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjh.pdb.
hormone 14-dec-08 3fjh
Title: crystal structure of c83a mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fji.pdb.
hormone 14-dec-08 3fji
Title: crystal structure of k12v/c83i/c117v mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjj.pdb.
hormone 14-dec-08 3fjj
Title: crystal structure of c83v mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjk.pdb.
hormone 14-dec-08 3fjk
Title: crystal structure of a66c mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3fjq.pdb.
transferase 15-dec-08 3fjq
Mn
Title: crystal structure of camp-dependent protein kinase catalytic subunit alpha in complex with peptide inhibitor pki alpha (6-25)
Author: c. kim
Keywords: atp- binding, camp, cytoplasm, kinase, lipoprotein, myristate, nucleotide-binding, nucleus, phosphoprotein, serine/threonine-protein kinase, transferase, protein kinase inhibitor
- 3fky.pdb.
ligase 18-dec-08 3fky
Title: crystal structure of the glutamine synthetase gln1deltan18 from the yeast saccharomyces cerevisiae
Author: y. x. he, l. gui, y. z. liu, y. du, y. y. zhou, p. li, c. z. zhou
Keywords: catalytic domain, acetylation, cytoplasm, ligase, ubl conjugation
- 3fkz.pdb.
hydrolase 18-dec-08 3fkz
Title: x-ray structure of the non covalent swapped form of the s16g/t17n/a19p/a20s/k31c/s32c mutant of bovine pancreatic ribonuclease
Author: a. merlino, i. russo krauss, m. perillo, c. a. mattia, c. ercole, d. picone, a. vergara, f. sica
Keywords: secreted
- 3fl0.pdb.
hydrolase 18-dec-08 3fl0
Title: x-ray structure of the non covalent swapped form of the q28l/k31c/s32c mutant of bovine pancreatic ribonuclease in complex with 2'-deoxycytidine-2'-deoxyguanosine-3',5'- monophosphate
Author: a. merlino, i. russo krauss, m. perillo, c. a. mattia, c. ercole, d. picone, a. vergara, f. sica
Keywords: secreted
- 3fl1.pdb.
hydrolase 18-dec-08 3fl1
Title: x-ray structure of the non covalent swapped form of the a19p/q28l/k31c/s32c mutant of bovine pancreatic ribonuclease in complex with 2'-deoxycytidine-2'- deoxyguanosine-3',5'-monophosphate
Author: a. merlino, i. russo krauss, m. perillo, c. a. mattia, c. ercole, d. picone, a. vergara, f. sica
Keywords: secreted
- 3fl3.pdb.
hydrolase 18-dec-08 3fl3
Title: x-ray structure of the ligand free non covalent swapped form of the a19p/q28l/k31c/s32c mutant of bovine pancreatic ribonuclease
Author: a. merlino, i. russo krauss, m. perillo, c. a. mattia, c. ercole, d. picone, a. vergara, f. sica
Keywords: secreted
- 3fpe.pdb.
biosynthetic protein, transferase 05-jan-09 3fpe
Br
Title: crystal structure of mtnas in complex with thermonicotianamine
Author: c. dreyfus, d. pignol, p. arnoux
Keywords: nicotianamine, biosynthetic protein, transferase
- 3fpf.pdb.
biosynthetic protein, transferase 05-jan-09 3fpf
Br
Title: crystal structure of mtnas in complex with mta and tna
Author: c. dreyfus, d. pignol, p. arnoux
Keywords: nicotianamine, biosynthetic protein, transferase
- 3fpg.pdb.
biosynthetic protein, transferase 05-jan-09 3fpg
Br
Title: crystal structure of e81q mutant of mtnas
Author: c. dreyfus, d. pignol, p. arnoux
Keywords: nicotianamine, biosynthetic protein, transferase
- 3fph.pdb.
biosynthetic protein, transferase 05-jan-09 3fph
Na
Title: crystal structure of e81q mutant of mtnas in complex with l- glutamate
Author: c. dreyfus, d. pignol, p. arnoux
Keywords: nicotianamine, biosynthetic protein, transferase
- 3fpj.pdb.
biosynthetic protein, transferase 05-jan-09 3fpj
Br
Title: crystal structure of e81q mutant of mtnas in complex with s- adenosylmethionine
Author: c. dreyfus, d. pignol, p. arnoux
Keywords: nicotianamine, biosynthetic protein, transferase
- 3g1q.pdb.
oxidoreductase 30-jan-09 3g1q
Fe
Title: crystal structure of sterol 14-alpha demethylase (cyp51) from trypanosoma brucei in ligand free state
Author: g. i. lepesheva, t. y. hargrove, j. harp, z. wawrzak, m. r. waterman, h. park
Keywords: cyp51, cytochrome p450, heme, oxidoreductase, monooxygenase, membrane protein, sterol biosynthesis
- 3g62.pdb.
phosphate binding protein 06-feb-09 3g62
Title: subatomic resolution structure of pfluding at ph 4.5
Author: d. liebschner, m. elias, s. moniot, b. fournier, k. scott, c. jelsch, b. guillot, c. lecomte, e. chabriere
Keywords: phosphate binding, ding protein, hydrogen atom, phosphate binding protein
- 3g63.pdb.
phosphate binding protein 06-feb-09 3g63
Title: subatomic resolution structure of pfluding at ph 8.5
Author: d. liebschner, m. elias, s. moniot, b. fournier, k. scott, c. jelsch, b. guillot, c. lecomte, e. chabriere
Keywords: phosphate binding, ding protein, hydrogen atom, phosphate binding protein
- 3g98.pdb.
ligase 13-feb-09 3g98
Title: crystal structure of the c-ala domain from aquifex aeolicus alanyl-trna synthetase
Author: m. guo, x. l. yang, p. schimmel
Keywords: aminoacyl-trna synthetase, atp-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis
- 3gb4.pdb.
electron transport, oxidoreductase 18-feb-09 3gb4
Cl Co Fe
Title: crystal structure of dicamba monooxygenase with non-heme cobalt and dicamba
Author: t. j. rydel, e. j. sturman, f. moshiri, g. r. brown, y. qi
Keywords: electron transport, oxidoreductase, 2fe-2s, iron, iron-sulfur, metal-binding
- 3gbs.pdb.
hydrolase 20-feb-09 3gbs
Title: crystal structure of aspergillus oryzae cutinase
Author: y. gosser, z. lu, g. alemu, h. li, x. kong, z. liu, j. montclare
Keywords: alpha beta hydrolase, hydrolase, secreted
- 3gfb.pdb.
oxidoreductase 26-feb-09 3gfb
Title: l-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis
Author: a. bowyer
Keywords: cytoplasm, metal-binding, nad, oxidoreductase, zinc
- 3gfx.pdb.
hydrolase, signaling protein 27-feb-09 3gfx
Ca
Title: klebsiella pneumoniae blrp1 ph 4.5 calcium/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: bluf-domain, eal-domain, hydrolase, signaling protein
- 3gfy.pdb.
hydrolase, signaling protein 27-feb-09 3gfy
Title: klebsiella pneumoniae blrp1 with fmn and cyclic digmp, no metal ions
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gfz.pdb.
hydrolase, signaling protein 27-feb-09 3gfz
Mn
Title: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gg0.pdb.
hydrolase, signaling protein 27-feb-09 3gg0
Mn
Title: klebsiella pneumoniae blrp1 ph 9.0 manganese/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gg1.pdb.
hydrolase, signaling protein 27-feb-09 3gg1
Ca
Title: klebsiella pneumoniae blrp1 ph 8.0 calcium/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: bluf domain, eal domain, hydrolase, signaling protein
- 3ghq.pdb.
metal binding protein 04-mar-09 3ghq
Fe
Title: crystal structure of e. coli w35f bfr mutant
Author: a. crow, t. l. lawson, a. lewin, g. r. moore, n. e. le brun
Keywords: w35f, heme, iron, iron storage, metal binding protein
- 3gis.pdb.
blood clotting 06-mar-09 3gis
Ca
Title: crystal structure of na-free thrombin in complex with thrombomodulin
Author: t. e. adams, j. a. huntington
Keywords: polymorphism, protease, secreted, serine protease, zymogen, egf-like domain, hydroxylation, membrane, receptor, thrombophilia, transmembrane, blood clotting
- 3git.pdb.
transferase 06-mar-09 3git
Zn Fe
Title: crystal structure of a truncated acetyl-coa synthase
Author: a. volbeda, c. darnault, j. c. fontecilla-camps
Keywords: 4fe-4s, carbon dioxide fixation, iron, iron-sulfur, metal-binding, nickel, transferase
- 3gkz.pdb.
immune system 11-mar-09 3gkz
Title: crystal structures of a therapeutic single chain antibody in complex methamphetamine
Author: r. celikel, e. c. peterson, m. owens, k. i. varughese
Keywords: methamphetamine, amphetamine, mdma, igg, immune system
- 3gm0.pdb.
immune system 12-mar-09 3gm0
Title: anti-methamphetamine single chain fv in complex with mdma
Author: r. celikel, e. c. peterson, m. owens, k. i. varughese
Keywords: single chain fv, therapeutic antibody, immune system
- 3gob.pdb.
electron transport, oxidoreductase 18-mar-09 3gob
Cl Co Fe
Title: crystal structure of dicamba monooxygenase with non-heme cobalt and dcsa
Author: t. j. rydel, e. j. sturman, f. moshiri, g. r. brown, y. qi
Keywords: electron transport, oxidoreductase
- 3gsy.pdb.
oxidoreductase 27-mar-09 3gsy
Mg
Title: structure of berberine bridge enzyme in complex with dehydroscoulerine
Author: a. winkler, p. macheroux, k. gruber
Keywords: bicovalent flavinylation, n- glycosylation, p-cresol methyl hydroxylase superfamily, alkaloid metabolism, cytoplasmic vesicle, fad, flavoprotein, glycoprotein, oxidoreductase
- 3gte.pdb.
electron transport, oxidoreductase 27-mar-09 3gte
Fe
Title: crystal structure of dicamba monooxygenase with non-heme iron
Author: t. j. rydel, e. j. sturman, f. moshiri, g. r. brown, y. qi
Keywords: electron transport, oxidoreductase
- 3gts.pdb.
electron transport, oxidoreductase 28-mar-09 3gts
Cl Fe
Title: crystal structure of dicamba monooxygenase with non-heme iron and dicamba
Author: t. j. rydel, e. j. sturman, f. moshiri, g. r. brown, y. qi
Keywords: electron transport, oxidoreductase
- 3gui.pdb.
hydrolase 30-mar-09 3gui
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--apo structure
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3guj.pdb.
hydrolase 30-mar-09 3guj
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--benzene binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3guk.pdb.
hydrolase 30-mar-09 3guk
Cl Ca
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--toluene binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3gul.pdb.
hydrolase 30-mar-09 3gul
Cl Ca
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--ethylbenzene binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3gum.pdb.
hydrolase 30-mar-09 3gum
Cl Ca
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--p-xylene binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3gun.pdb.
hydrolase 30-mar-09 3gun
Cl Ca
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--aniline binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3guo.pdb.
hydrolase 30-mar-09 3guo
Cl Ca
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--phenol binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3gup.pdb.
hydrolase 30-mar-09 3gup
Cl Mg
Title: t4 lysozyme m102e/l99a mutant with buried charge in apolar cavity--pyridine binding
Author: l. liu, b. w. matthews
Keywords: apolar cavity, buried charge, ligand binding, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3h1v.pdb.
transferase 14-apr-09 3h1v
Na
Title: human glucokinase in complex with a synthetic activator
Author: k. kamata, k. takahashi
Keywords: diabetes, allosteric activator, alternative splicing, atp-binding, diabetes mellitus, disease mutation, glycolysis, kinase, nucleotide-binding, polymorphism, transferase
- 3h6f.pdb.
hydrolase 23-apr-09 3h6f
Title: crystal structure of mycobacterium tuberculosis proteasome modified by inhibitor ht1171
Author: d. li, h. li, g. lin
Keywords: oxazolidin-2-one, crystallography, x-ray, mycobacterium tuberculosis, protease inhibitors, proteasome endopeptidase complex, protein subunits, substrate specificity, hydrolase, proteasome
- 3h6i.pdb.
hydrolase 23-apr-09 3h6i
Title: crystal structure of mycobacterium tuberculosis proteasome modified by inhibitor gl1
Author: d. li, h. li, g. lin
Keywords: oxazolidin-2-one, crystallography, x-ray, mycobacterium tuberculosis, protease inhibitors, proteasome endopeptidase complex, protein subunits, substrate specificity, hydrolase, proteasome
- 3h86.pdb.
transferase 28-apr-09 3h86
Title: crystal structure of adenylate kinase from methanococcus maripaludis
Author: d. g. milya, s. yousif
Keywords: kinase, adenylate kinase, phosphotransferase, atp-binding, cytoplasm, nucleotide-binding, transferase
- 3h9d.pdb.
structural protein 30-apr-09 3h9d
Ca
Title: crystal structure of trypanosoma brucei atg8
Author: r. koopmann, k. muhammad, m. perbandt, c. betzel, m. duszenko
Keywords: lipidation, ubiquitin-like, trypanosoma brucei, structural protein
- 3hbf.pdb.
transferase 04-may-09 3hbf
Title: structure of ugt78g1 complexed with myricetin and udp
Author: x. wang, l. modolo, l. li, r. dixon
Keywords: gt-b fold, gt1, phenylpropanoid metabolism, transferase
- 3hbj.pdb.
transferase 04-may-09 3hbj
Title: structure of ugt78g1 complexed with udp
Author: x. wang, l. modolo, l. li, r. dixon
Keywords: gt-b fold, gt1, phenylpropanoid metabolism, transferase
- 3hd3.pdb.
hydrolase 06-may-09 3hd3
Cl
Title: high resolution crystal structure of cruzain bound to the vinyl sulfone inhibitor smdc-256047
Author: i. d. kerr, m. debnath, l. s. brinen
Keywords: autocatalytic cleavage, disulfide bond, glycoprotein, hydrolase, protease, thiol protease, zymogen
- 3hf9.pdb.
hydrolase 11-may-09 3hf9
Title: crystal structure of mycobacterium tuberculosis proteasome open-gate mutant modified by inhibitor gl1
Author: d. li, h. li
Keywords: proteasome
- 3hfa.pdb.
hydrolase 11-may-09 3hfa
Title: crystal structure of mycobacterium tuberculosis proteasome open-gate mutant
Author: d. li, h. li
Keywords: x-ray, mycobacterium tuberculosis, proteasome endopeptidase, open gate, mutant, hydrolase, proteasome
- 3hfh.pdb.
transcription regulator 11-may-09 3hfh
Se
Title: crystal structure of tandem ff domains
Author: m. lu, j. yang, z. ren, s. subir, m. t. bedford, r. h. jacobson, j. s. mcmurray, x. chen
Keywords: activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor, transcription, transcription regulation, transcription regulator
- 3hjf.pdb.
nucleic acid binding protein/dna/rna 21-may-09 3hjf
Mg
Title: crystal structure of t. thermophilus argonaute e546 mutant protein complexed with dna guide strand and 15-nt rna target strand
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna_rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3hjr.pdb.
hydrolase 22-may-09 3hjr
Ca
Title: crystal structure of serine protease of aeromonas sobria
Author: h. utsunomiya, h. tsuge, h. kobayashi, k. okamoto
Keywords: kexin, hydrolase, protease
- 3hk2.pdb.
nucleic acid binding protein/dna/rna 22-may-09 3hk2
Mg
Title: crystal structure of t. thermophilus argonaute n478 mutant protein complexed with dna guide strand and 19-nt rna target strand
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna-rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3hl2.pdb.
transferase 26-may-09 3hl2
Title: the crystal structure of the human sepsecs-trnasec complex
Author: s. palioura, t. a. steitz, d. soll, m simonovic
Keywords: trnasec, sepsecs, protein-rna complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium, transferase
- 3hm9.pdb.
nucleic acid binding protein/dna/rna 28-may-09 3hm9
Mg
Title: crystal structure of t. thermophilus argonaute complexed with dna guide strand and 19-nt rna target strand
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna-rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3ho1.pdb.
nucleic acid binding protein/dna/rna 01-jun-09 3ho1
Mg
Title: crystal structure of t. thermophilus argonaute n546 mutant protein complexed with dna guide strand and 12-nt rna target strand
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna-rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3hoe.pdb.
transport protein 02-jun-09 3hoe
Title: crystal structure of surface lipoprotein
Author: t. f. moraes, r. h. yu, a. b. schryvers, n. c. j. strynadka
Keywords: ion transport, receptor, transferrin, vaccine, transport protein
- 3hol.pdb.
transport protein 02-jun-09 3hol
Title: the structure of intact ap-tbpb (n and c lobes)
Author: t. f. moraes, r. h. yu, a. b. schryvers, n. c. j. strynadka
Keywords: iron acquisition, vaccine, lipoprotein, transport protein
- 3hom.pdb.
hormone 02-jun-09 3hom
Title: crystal structure of oxidized a66c mutant of human acidic fibroblast growth factor
Author: m. blaber, j. lee
Keywords: acetylation, alternative splicing, angiogenesis, developmental protein, differentiation, growth factor, heparin-binding, mitogen, polymorphism, hormone
- 3hos.pdb.
transferase, dna binding protein/dna 03-jun-09 3hos
Mg
Title: crystal structure of the mariner mos1 paired end complex with mg
Author: j. m. richardson, m. d. walkinshaw
Keywords: synaptic complex, transposase, inverted repeat dna, dna binding protein/dna complex, transferase
- 3hot.pdb.
transferase, dna binding protein/dna 03-jun-09 3hot
Mn I
Title: crystal structure of the mos1 mariner paired end complex with mn
Author: j. m. richardson, m. d. walkinshaw
Keywords: synaptic complex, transposase, inverted repeat dna, dna binding protein/dna complex, transferase
- 3hrl.pdb.
structural genomics, unknown function 09-jun-09 3hrl
Cl Se
Title: crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae
Author: e. v. filippova, g. minasov, l. shuvalova, o. kiryukhina, g. cobb, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, structural genomics, unknown function
- 3hus.pdb.
blood clotting 15-jun-09 3hus
Ca
Title: crystal structure of recombinant gamma n308k fibrinogen fragment d with the peptide ligand gly-pro-arg-pro-amide
Author: s. t. lord, s. r. bowley, n. okumura
Keywords: pyrrolidone carboxylic acid, calcium, sulfation, blood clotting
- 3hv8.pdb.
hydrolase 15-jun-09 3hv8
Title: crystal structure of fimx eal domain from pseudomonas aeruginosa bound to c-di-gmp
Author: m. v. a. s. navarro, n. de, n. bae, h. sondermann
Keywords: biofilm, c-di-gmp, hydrolase
- 3hvd.pdb.
transport protein, toxin 15-jun-09 3hvd
Ca
Title: the protective antigen component of anthrax toxin forms functional octameric complexes
Author: a. f. kintzer, k. c. dong, j. m. berger, b. a. krantz
Keywords: anthrax protective antigen, octamer, xray-crystallography, transport protein, toxin
- 3hvr.pdb.
nucleic acid binding protein/dna/rna 16-jun-09 3hvr
Mg
Title: crystal structure of t. thermophilus argonaute complexed with dna guide strand and 19-nt rna target strand with two mg2+ at the cleavage site
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna-rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3hxm.pdb.
nucleic acid binding protein/dna/rna 21-jun-09 3hxm
Mg
Title: structure of an argonaute complexed with guide dna and target rna duplex containing two mismatches.
Author: y. wang, h. li, g. sheng, d. j. patel
Keywords: protein-dna-rna complex, plasmid, nucleic acid binding protein/dna/rna complex
- 3hy2.pdb.
oxidoreductase 22-jun-09 3hy2
Mg
Title: crystal structure of sulfiredoxin in complex with peroxiredoxin i and atp:mg2+
Author: t. j. jonsson, l. c. johnson, w. t. lowther
Keywords: nucleotide- binding
- 3hyd.pdb.
protein fibril 22-jun-09 3hyd
Title: lvealyl peptide derived from human insulin chain b, residues 11-17
Author: m. i. ivanova, m. r. sawaya, d. eisenberg
Keywords: carbohydrate metabolism, cleavage on pair of basic residues, diabetes mellitus, disease mutation, disulfide bond, glucose metabolism, hormone, pharmaceutical, secreted, protein fibril
- 3i2e.pdb.
hydrolase 29-jun-09 3i2e
Title: crystal structure of human dimethylarginine dymethylaminohydrolase-1 (ddah-1)
Author: a. f. monzingo, y. wang, s. hu, t. h. schaller, j. d. robertus, w. fast
Keywords: hydrolase, nitric oxide synthase regulator, metal- binding, zinc
- 3i38.pdb.
chaperone 30-jun-09 3i38
Se
Title: structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578
Author: e. v. filippova, g. minasov, l. shuvalova, o. kiryukhina, j. bearden, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, chaperone
- 3i4a.pdb.
hydrolase 01-jul-09 3i4a
Title: crystal structure of dimethylarginine dimethylaminohydrolase-1 (ddah-1) in complex with n5-(1- iminopropyl)-l-ornithine
Author: a. f. monzingo, y. wang, s. hu, t. h. schaller, w. fast, j. d. robertus
Keywords: hydrolase, nitric oxide synthase regulation, acetylation, metal-binding, zinc
- 3i5a.pdb.
signaling protein 03-jul-09 3i5a
Sr
Title: crystal structure of full-length wpsr from pseudomonas syringae
Author: m. v. a. s. navarro, n. de, h. sondermann
Keywords: ggdef, chey, signaling protein
- 3i5c.pdb.
signaling protein 03-jul-09 3i5c
Mg
Title: crystal structure of a fusion protein containing the leucine zipper of gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, h. sondermann
Keywords: ggdef, leucine zipper, signaling protein
- 3i84.pdb.
cell adhesion 09-jul-09 3i84
Cl
Title: the crystal structure of human emmprin n-terminal domain 1 in p6(1)22 space group
Author: j. luo, g. l. gilliland
- 3i85.pdb.
cell adhesion 09-jul-09 3i85
Title: the crystal structure of human emmprin n-terminal domain 1
Author: j. luo, g. l. gilliland
- 3i9j.pdb.
hydrolase 12-jul-09 3i9j
F
Title: crystal structure of adp ribosyl cyclase complexed with a substrate analog and a product nicotinamide
Author: q. liu, r. graeff, i. a. kriksunov, h. jiang, b. zhang, n. oppenheimer, h. lin, b. v. l. potter, h. c. lee, q. hao
Keywords: enzyme-analog-nicotinamide complex, adp-ribosyl cyclase, calcium, disulfide bond, fertilization, hydrolase, nad
- 3i9k.pdb.
hydrolase 12-jul-09 3i9k
Title: crystal structure of adp ribosyl cyclase complexed with substrate nad
Author: q. liu, r. graeff, i. a. kriksunov, h. jiang, b. zhang, n. oppenheimer, h. lin, b. v. l. potter, h. c. lee, q. hao
Keywords: protein substrate nad complex, adp-ribosyl cyclase, calcium, disulfide bond, fertilization, hydrolase, nad
- 3i9l.pdb.
hydrolase 12-jul-09 3i9l
Title: crystal structure of adp ribosyl cyclase complexed with n1- cidpr
Author: q. liu, r. graeff, i. a. kriksunov, h. jiang, b. zhang, n. oppenheimer, h. lin, b. v. l. potter, h. c. lee, q. hao
Keywords: enzyme-product analog complex, adp-ribosyl cyclase, calcium, disulfide bond, fertilization, hydrolase, nad
- 3i9m.pdb.
hydrolase 12-jul-09 3i9m
F
Title: crystal structure of human cd38 complexed with an analog ara-2'f-adpr
Author: q. liu, r. graeff, i. a. kriksunov, h. jiang, b. zhang, n. oppenheimer, h. lin, b. v. l. potter, h. c. lee, q. hao
Keywords: signal- anchor, transmembrane
- 3i9n.pdb.
hydrolase 12-jul-09 3i9n
F
Title: crystal structure of human cd38 complexed with an analog ribo-2'f-adp ribose
Author: q. liu, r. graeff, i. a. kriksunov, h. jiang, b. zhang, n. oppenheimer, h. lin, b. v. l. potter, h. c. lee, q. hao
Keywords: signal- anchor, transmembrane
- 3i9o.pdb.
hydrolase 12-jul-09 3i9o
F
Title: crystal structure of adp ribosyl cyclase complexed with ribo-2'f-adp ribose
Author: r. graeff, q. liu, i. a. kriksunov, m. kotaka, n. oppenheimer, q. hao, h. c. lee
Keywords: enzyme-reaction-intermediate complex, adp-ribosyl cyclase, calcium, disulfide bond, fertilization, hydrolase, nad
- 3i9w.pdb.
transferase 13-jul-09 3i9w
Title: crystal structure of the e. coli histidine kinase sensor tors sensor domain
Author: j. o. moore, w. a. hendrickson
Keywords: atp-binding, cell inner membrane, cell membrane, kinase, membrane, nucleotide- binding, phosphoprotein, transferase, transmembrane, two- component regulatory system
- 3i9y.pdb.
transferase 13-jul-09 3i9y
Title: crystal structure of the v. parahaemolyticus histidine kinase sensor tors sensor domain
Author: j. o. moore, w. a. hendrickson
Keywords: atp-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane, two-component regulatory system
- 3icu.pdb.
ligase 18-jul-09 3icu
Title: protease-associated domain of the e3 ligase grail
Author: j. r. walker, l. yermekbayeva, a. seitova, j. weigelt, c. bountra, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: metal- binding, zinc, zinc-finger
- 3icv.pdb.
hydrolase 18-jul-09 3icv
Title: structural consequences of a circular permutation on lipase b from candida antartica
Author: j. r. horton, z. qian, d. jia, s. lutz, x. cheng
Keywords: cleavage on pair of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulfide bond
- 3icw.pdb.
hydrolase 18-jul-09 3icw
Title: structure of a circular permutation on lipase b from candida antartica with bound suicide inhibitor
Author: j. r. horton, z. qian, d. jia, s. a. lutz, x. cheng
Keywords: suicide inhibition, hydrolase, cleavage on pair of basic residues, disulfide bond, glycoprotein, lipid degradation, zymogen
- 3idd.pdb.
isomerase 20-jul-09 3idd
Se
Title: cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Author: a. joachimiak, n. e. c. duke, n. marshall, k. buck, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, glycolysis, isomerase
- 3idp.pdb.
transferase 21-jul-09 3idp
Cl
Title: b-raf v600e kinase domain in complex with an aminoisoquinoline inhibitor
Author: d. a. whittington, l. f. epstein
Keywords: proto-oncogene, serine/threonine-protein kinase, zinc, zinc-finger
- 3ie9.pdb.
electron transport 22-jul-09 3ie9
Cl Cu Zn
Title: structure of oxidized m98l mutant of amicyanin
Author: n sukumar, v. l. davidson
Keywords: electron transport, copper, metal-binding, periplasm, transport
- 3iea.pdb.
electron transport 22-jul-09 3iea
Cl Cu Zn
Title: structure of reduced m98l mutant of amicyanin
Author: n. sukumar, v. l. davidson
Keywords: electron transport, copper, metal-binding, periplasm, transport
- 3iej.pdb.
hydrolase 22-jul-09 3iej
Cl
Title: pyrazole-based cathepsin s inhibitors with arylalkynes as p1 binding elements
Author: s. bembenek
Keywords: disulfide bond, glycoprotein, hydrolase, lysosome, polymorphism, protease, thiol protease, zymogen
- 3ifj.pdb.
splicing 24-jul-09 3ifj
Zn
Title: crystal structure of mtu reca intein, splicing domain
Author: p. van roey, m. belfort
Keywords: sos response
- 3igd.pdb.
splicing 27-jul-09 3igd
Zn
Title: crystal structure of mtu reca intein, splicing domain
Author: p. van roey, m. belfort
Keywords: sos response
- 3ign.pdb.
transferase 28-jul-09 3ign
Se
Title: crystal structure of the ggdef domain from marinobacter aquaeolei diguanylate cyclase complexed with c-di-gmp - northeast structural genomics consortium target mqr89a
Author: s. vorobiev, h. neely, j. seetharaman, h. wang, e. l. foote, c. ciccosanti, s. sahdev, r. xiao, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: ggdef domain, a1u3w3_marav, nesg, mqr89a, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, transferase
- 3ii8.pdb.
structural genomics, unknown function 31-jul-09 3ii8
Cl Mg Se
Title: crystal structure of putative diguanylate cyclase/phosphodiesterase complex with cycli di-gmp
Author: c. chang, x. xu, h. cui, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: putative diguanylate cyclase/phosphodiesterase (ggdef & eal domains), structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3ijh.pdb.
immune system 04-aug-09 3ijh
Mg
Title: structure of s67-27 in complex with ko
Author: c. l. brooks, r. j. blackler, s. v. evans
Keywords: kdo, chlamydia, lps, fab, carbohydrate, immune system
- 3ijk.pdb.
dna 04-aug-09 3ijk
Se
Title: 5-ome modified dna 8mer
Author: j. sheng, w. zhang, a. e. a. hassan, j. gan, z. huang
Keywords: dna, 5-methoxy-uridine
- 3ijn.pdb.
dna 04-aug-09 3ijn
Se
Title: 5-seme-cytidine modified dna 8mer
Author: j. sheng, w. zhang, a. e. a. hassan, j. gan, z. huang
Keywords: dna, 5-seme-cytidine
- 3ijs.pdb.
immune system 04-aug-09 3ijs
Mg
Title: structure of s67-27 in complex with tsbp
Author: c. l. brooks, r. j. blackler, s. v. evans
Keywords: kdo, chlamydia, lps, fab, carbohydrate, immune system
- 3ijy.pdb.
immune system 05-aug-09 3ijy
Mg
Title: structure of s67-27 in complex with kdo(2.8)kdo
Author: c. l. brooks, r. j. blackler, s. v. evans
Keywords: kdo, chlamydia, lps, fab, carbohydrate, immune system
- 3ikc.pdb.
immune system 05-aug-09 3ikc
Mg
Title: structure of s67-27 in complex with kdo(2.8)-7-o-methyl-kdo
Author: c. l. brooks, r. j. blackler, s. v. evans
Keywords: kdo, chlamydia, lps, fab, carbohydrate, immune system
- 3il3.pdb.
transferase 06-aug-09 3il3
Title: structure of haemophilus influenzae fabh
Author: k. s. gajiwala, s. margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3il4.pdb.
transferase 06-aug-09 3il4
Title: structure of e. faecalis fabh in complex with acetyl coa
Author: k. s. gajiwala, s margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3il5.pdb.
transferase 06-aug-09 3il5
Br
Title: structure of e. faecalis fabh in complex with 2-({4-bromo-3- [(diethylamino)sulfonyl]benzoyl}amino)benzoic acid
Author: k. s. gajiwala, s margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3il6.pdb.
transferase 06-aug-09 3il6
Title: structure of e. faecalis fabh in complex with 2-({4-[(3r, 5s)-3,5-dimethylpiperidin-1-yl]-3-phenoxybenzoyl}amino) benzoic acid
Author: k. s. gajiwala, s. margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3il7.pdb.
transferase 06-aug-09 3il7
Title: crystal structure of s. aureus fabh
Author: k. s. gajiwala, s. margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3il9.pdb.
transferase 06-aug-09 3il9
Title: structure of e. coli fabh
Author: k. s. gajiwala, s margosiak, j. lu, j. cortez, y. su, z. nie, k. appelt
Keywords: fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis, multifunctional enzyme, transferase
- 3ilw.pdb.
isomerase 07-aug-09 3ilw
Title: structure of dna gyrase subunit a n-terminal domain
Author: e. m. tretter, a. j. schoeffler, s. r. weisfield, j. m. berger, tb structural genomics consortium (tbsgc)
Keywords: nucleotide- binding
- 3imx.pdb.
transferase 11-aug-09 3imx
Na
Title: crystal structure of human glucokinase in complex with a synthetic activator
Author: t. stams, b. vash
Keywords: atp-binding, glycolysis, kinase, nucleotide- binding, transferase
- 3inn.pdb.
ligase 12-aug-09 3inn
Title: crystal structure of pantoate-beta-alanine-ligase in complex with atp at low occupancy at 2.1 a resolution
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: seattle structural genomics center for infectious disease
- 3ip8.pdb.
lyase 17-aug-09 3ip8
Title: crystal structure of arylmalonate decarboxylase (amdase) from bordatella bronchiseptic in complex with benzylphosphonate
Author: k. okrasa, c. levy, d. leys, j. micklefield
Keywords: decarboxylase, lyase
- 3iqe.pdb.
oxidoreductase 20-aug-09 3iqe
Na Ca
Title: structure of f420 dependent methylene- tetrahydromethanopterin dehydrogenase in complex with methylene-tetrahydromethanopterin and coenzyme f420
Author: k. e. ceh, u. demmer, e. warkentin, j. moll, r. k. thauer, s. shima, u. ermler
Keywords: substrate and co-substrate, methanogenesis, one-carbon metabolism, oxidoreductase
- 3iqf.pdb.
oxidoreductase 20-aug-09 3iqf
Na Ca
Title: structure of f420 dependent methylene- tetrahydromethanopterin dehydrogenase in complex with methenyl-tetrahydromethanopterin
Author: k. e. ceh, u. demmer, e. warkentin, j. moll, r. k. thauer, s. shima, u. ermler
Keywords: methanogenesis, one-carbon metabolism, oxidoreductase
- 3iqz.pdb.
oxidoreductase 21-aug-09 3iqz
Na Ca
Title: structure of f420 dependent methylene- tetrahydromethanopterin dehydrogenase in complex with methylene-tetrahydromethanopterin
Author: k. e. ceh, u. demmer, e. warkentin, j. moll, r. k. thauer, s. shima, u. ermler
Keywords: oxidoreductase, methanogenesis, one-carbon metabolism
- 3ish.pdb.
oxidoreductase 25-aug-09 3ish
Title: crystal structure of helicobacter pylori thioredoxin reductase
Author: d. sanders, j. obiero, k. van straaten
Keywords: disulfide bond, fad, flavoprotein, nadp, oxidoreductase, redox-active center
- 3iwa.pdb.
oxidoreductase 02-sep-09 3iwa
Ca
Title: crystal structure of a fad-dependent pyridine nucleotide- disulphide oxidoreductase from desulfovibrio vulgaris
Author: j. b. bonanno, j. freeman, k. t. bain, m. iizuka, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: oxidoreductase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3ixq.pdb.
isomerase 04-sep-09 3ixq
Cl
Title: structure of ribose 5-phosphate isomerase a from methanocaldococcus jannaschii
Author: s. v. antonyuk, m. j. ellis, r. w. strange, s. s. hasnain, y. bessho, s. kuramitsu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi, carbohydrate metabolism
- 3jtw.pdb.
oxidoreductase 14-sep-09 3jtw
Se
Title: crystal structure of putative dihydrofolate reductase (yp_805003.1) from pediococcus pentosaceus atcc 25745 at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative dihydrofolate reductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, ribd c-terminal domain, oxidoreductase
- 3jtz.pdb.
dna binding protein 14-sep-09 3jtz
Na
Title: structure of the arm-type binding domain of hpi integrase
Author: a. szwagierczak, u. antonenka, g. m. popowicz, t. sitar, t. a. holak, a. rakin
Keywords: dna binding protein
- 3ju0.pdb.
dna binding protein 14-sep-09 3ju0
Title: structure of the arm-type binding domain of hai7 integrase
Author: a. szwagierczak, u. antonenka, g. m. popowicz, t. sitar, t. a. holak, a. rakin
Keywords: dna binding protein
- 3jui.pdb.
translation 15-sep-09 3jui
Se
Title: crystal structure of the c-terminal domain of human translation initiation factor eif2b epsilon subunit
Author: j. wei, h. xu, c. zhang, m. wang, f. gao, w. gong
Keywords: guanine nucleotide exchange factor, translation initiation factor, disease mutation, initiation factor, leukodystrophy, phosphoprotein, polymorphism, protein biosynthesis
- 3jul.pdb.
transferase 15-sep-09 3jul
Mg Se
Title: crystal structure of listeria innocua d-tagatose-6-phosphate kinase bound with substrate
Author: l. satyanarayana, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics
- 3jvr.pdb.
transferase 17-sep-09 3jvr
Cl
Title: characterization of the chk1 allosteric inhibitor binding site
Author: p. chen
Keywords: ubl conjugation
- 3jvs.pdb.
transferase 17-sep-09 3jvs
Title: characterization of the chk1 allosteric inhibitor binding site
Author: p. chen
Keywords: ubl conjugation
- 3jw1.pdb.
hydrolase 17-sep-09 3jw1
Title: crystal structure of bovine pancreatic ribonuclease complexed with uridine-5'-monophosphate at 1.60 a resolution
Author: s. b. larson, j. s. day, c. nguyen, r. cudney, a. mcpherson, center for high-throughput structural biology (chtsb)
Keywords: secreted
- 3jxo.pdb.
transport protein 20-sep-09 3jxo
Title: crystal structure of an octomeric two-subunit trka k+ channel ring gating assembly, tm1088a:tm1088b, from thermotoga maritima
Author: m. c. deller, h. a. johnson, m. miller, g. spraggon, i. a. wilson, s. a. lesley, joint center for structural genomics (jcsg)
Keywords: structural genomics, psi-2-2, protein structure initiative, joint center for structural genomics, jcsg, potassium, potassium transport, transport protein
- 3jyi.pdb.
hydrolase 21-sep-09 3jyi
Title: structural and biochemical characterization suggests a tem-1 -lactamase asn170gly active site mutant acts via substrate- assisted catalysis
Author: n. g. brown, t. g. palzkill, b. v. v. prasad, s. shanker
Keywords: enzyme, antibiotic resistance, disulfide bond, hydrolase, plasmid, transposable element
- 3jys.pdb.
sugar binding protein 22-sep-09 3jys
Mg Se
Title: crystal structure of susd superfamily protein (yp_001298690.1) from bacteroides vulgatus atcc 8482 at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: sugar binding protein
- 3jyt.pdb.
transferase/dna complex 22-sep-09 3jyt
Mg
Title: k65r mutant hiv-1 reverse transcriptase cross-linked to ds- dna and complexed with datp as the incoming nucleotide substrate
Author: k. das, e. arnold
Keywords: multifunctional enzyme, nucleotidyltransferase, rna- directed dna polymerase transferase
- 3jzd.pdb.
oxidoreductase 23-sep-09 3jzd
Cl Ca Se
Title: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from ralstonia eutropha jmp134 at 2.10 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative alcohol dehedrogenase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, oxidoreductase
- 3jzl.pdb.
lyase 23-sep-09 3jzl
Se
Title: crystal structure of putative cystathionine beta-lyase involved in aluminum resistance (yp_013912.1) from listeria monocytogenes 4b f2365 at 1.91 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative cystathionine beta-lyase involved in aluminum resistance, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, lyase
- 3jzy.pdb.
endocytosis 24-sep-09 3jzy
Title: crystal structure of human intersectin 2 rhogef domain
Author: y. shen, w. tempel, y. tong, y. li, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: structural genomics consortium (sgc), sh3 domain, endocytosis
- 3k0y.pdb.
toxin 25-sep-09 3k0y
Se
Title: crystal structure of putative toxin related protein (yp_001303978.1) from parabacteroides distasonis atcc 8503 at 2.16 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3k14.pdb.
lyase 25-sep-09 3k14
Cl K Zn
Title: co-crystal structure of 2c-methyl-d-erythritol 2,4- cyclodiphosphate synthase from burkholderia pseudomallei with fol fragment 535, ethyl 3-methyl-5,6-dihydroimidazo[2, 1-b][1,3]thiazole-2-carboxylate
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: ssgcid, seattle structural genomics center for infectious disease, fragment crystallography, fragment- based drug-design, fbdd, fragments of life, isoprene biosynthesis, lyase, metal-binding
- 3k17.pdb.
transferase 25-sep-09 3k17
Se
Title: crystal structure of a lin0012 protein from listeria innocua
Author: k. palani, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: transferase
- 3k1u.pdb.
hydrolase 28-sep-09 3k1u
Mg Na Se
Title: beta-xylosidase, family 43 glycosyl hydrolase from clostridium acetobutylicum
Author: j. osipiuk, r. wu, r. jedrzejczak, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc20493, beta-xylosidase, family 43 glycosyl hydrolase, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, hydrolase
- 3k1v.pdb.
rna 28-sep-09 3k1v
Ca
Title: cocrystal structure of a mutant class-i preq1 riboswitch
Author: d. j. klein, t. e. edwards, a. r. ferre-d'amare
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