Recent PDB releases or updates: week of 21 August 2009
- 1a69.pdb.
glycosyltransferase 08-mar-98 1a69
Title: purine nucleoside phosphorylase in complex with formycin b and sulphate (phosphate)
Author: g. koellner, m. luic, d. shugar, w. saenger, a. bzowska
Keywords: purine nucleoside phosphorylase, transferase
- 1f9z.pdb.
lyase 11-jul-00 1f9z
Ni
Title: crystal structure of the ni(ii)-bound glyoxalase i from escherichia coli
Author: m. m. he, s. l. clugston, j. f. honek, b. w. matthews
Keywords: protein-ni(ii) complex, homodimer, lyase
- 1fa5.pdb.
lyase 12-jul-00 1fa5
Zn
Title: crystal structure of the zn(ii)-bound glyoxalase i of escherichia coli
Author: m. m. he, s. l. clugston, j. f. honek, b. w. matthews
Keywords: homodimer, zn(ii)-bound, lyase
- 1fa6.pdb.
lyase 12-jul-00 1fa6
Co
Title: crystal structure of the co(ii)-bound glyoxalase i of escherichia coli
Author: m. m. he, s. l. clugston, j. f. honek, b. w. matthews
Keywords: homodimer, protein-co(ii) complex, lyase
- 1fa7.pdb.
lyase 12-jul-00 1fa7
Cd
Title: crystal structure of cd(ii)-bound glyoxalase i of escherichia coli
Author: m. m. he, s. l. clugston, j. f. honek, b. w. matthews
Keywords: homodimer, protein-cd(ii) complex, lyase
- 1fa8.pdb.
lyase 12-jul-00 1fa8
Title: crystal structure of the apo form glyoxalase i of escherichia coli
Author: m. m. he, s. l. clugston, j. f. honek, b. w. matthews
Keywords: homodimer, apo enzyme., lyase
- 1hhu.pdb.
antibiotic 28-dec-00 1hhu
Cl
Title: balhimycin in complex with d-ala-d-ala
Author: c. lehmann, g. bunkoczi, g. m. sheldrick, l. vertessy
Keywords: glycopeptide, vacomycin, direct methods, cell wall peptides
- 1js4.pdb.
glycosyl hydrolase 30-may-97 1js4
Ca
Title: endo/exocellulase:cellobiose from thermomonospora
Author: j. sakon, d. b. wilson, p. a. karplus
- 1lte.pdb.
lectin 25-jun-91 1lte
Mn Ca
Title: structure of a legume lectin with an ordered n-linked carbohydrate in complex with lactose
Author: b. shaanan, h. lis, n. sharon
- 1y25.pdb.
oxidoreductase 20-nov-04 1y25
Title: structure of mycobacterial thiol peroxidase tpx
Author: m. stehr, b. hoffmann, t. jger, m. singh, h. j. hecht
- 2cod.pdb.
signaling protein 17-may-05 2cod
(solution NMR)
Title: solution structure of the n-terminal ph domain of arap2 protein from human
Author: h. li, t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: ph domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, signaling protein
- 2cr5.pdb.
structural genomics, unknown function 20-may-05 2cr5
(solution NMR)
Title: solution structure of the ubx domain of d0h8s2298e protein
Author: h. p. zhang, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: reproduction 8, d0h8s2298e protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, unknown functio...
- 2goj.pdb.
oxidoreductase 13-apr-06 2goj
Fe
Title: the crystal structure of the enzyme fe-superoxide dismutase from plasmodium falciparum
Author: m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 2gpc.pdb.
oxidoreductase 17-apr-06 2gpc
Mg Fe
Title: the crystal structure of the enzyme fe-superoxide dismutase from trypanosoma cruzi
Author: m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 2jlt.pdb.
rna 15-sep-08 2jlt
Br
Title: crystal structure of an rna kissing complex
Author: c. diprimo, s. fribourg
Keywords: kissing complex
- 2jrz.pdb.
oxidoreductase 29-jun-07 2jrz
(solution NMR)
Title: solution structure of the bright/arid domain from the human jarid1c protein.
Author: c. koehler, s. bishop, e. f. dowler, a. diehl, p. schmieder, m. leidert, m. sundstrom, c. h. arrowsmith, j. wiegelt, a. edwards, h. oschkinat, l. j. ball, structural genomics consortium (sgc)
Keywords: bright/arid domain, helical, structural genomics, structural genomics consortium, sgc, oxidoreductase
- 2k9s.pdb.
transcription 23-oct-08 2k9s
(solution NMR)
Title: solution structure of dna binding domain of e. coli arac
Author: m. e. rodgers, r. f. schleif
Keywords: arabinose catabolism, carbohydrate metabolism, cytoplasm, dna-binding, repressor, transcription, transcription regulation
- 2kjf.pdb.
antimicrobial protein 28-may-09 2kjf
(solution NMR)
Title: the solution structure of the circular bacteriocin carnocyclin a (ccla)
Author: l. a. martin-visscher, x. gong, m. duszyk, j. vederas
Keywords: antimicrobial peptide, solution nmr, helical, saposin-fold, antibiotic, antimicrobial, bacteriocin, antimicrobial protein
- 2kls.pdb.
metal binding protein 08-jul-09 2kls
(solution NMR)
Title: apo-form of the second ca2+ binding domain of ncx1.4
Author: m. hilge, j. aelen, a. foarce, a. perrakis, g. w. vuister
Keywords: electrostatic switch, ca2+ sensor, ca2+ regulation, alternative splicing, metal binding protein
- 2klt.pdb.
metal binding protein 08-jul-09 2klt
(solution NMR)
Title: second ca2+ binding domain of ncx1.3
Author: m. hilge, j. aelen, a. foarce, a. perrakis, g. w. vuister
Keywords: electrostatic switch, ca2+ sensor, ca2+ regulation, alternative splicing, metal binding protein
- 2kmj.pdb.
rna/peptide 30-jul-09 2kmj
(solution NMR)
Title: high resolution nmr solution structure of a complex of hiv-2 tar rna and a synthetic tripeptide in a 1:2 stoichiometry
Author: j. ferner, m. suhartono, s. breitung, h. r. jonker, m. hennig, j. woehnert, m. goebel, h. schwalbe
Keywords: binding stoichiometry, hiv-2 tar, rna/peptide complex
- 2nna.pdb.
immune system 24-oct-06 2nna
Title: structure of the mhc class ii molecule hla-dq8 bound with a deamidated gluten peptide
Author: k. n. henderson, j. a. tye-din, j. rossjohn, r. p. anderson
Keywords: deamidated gluten peptide, post translational modification, immune system
- 2qu8.pdb.
structural genomics, unknown function 03-aug-07 2qu8
Title: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w from plasmodium falciparum
Author: a. k. wernimont, j. lew, l. lin, i. kozieradzki, y. zhao, m. ravichandran, m. shapiro, a. bochkarev, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, r. hui, w. qiu, d. sukumar, a. hassanali, structural genomics consortium (sgc)
Keywords: malaria, plasmodium falciparum, structural genomics, structural genomics consortium, sgc, unknown function
- 2r0j.pdb.
ligase 20-aug-07 2r0j
Title: crystal structure of the putative ubiquitin conjugating enzyme, pfe1350c, from plasmodium falciparum
Author: a. k. wernimont, j. lew, l. lin, a. hassanali, i. kozieradzki, y. zhao, m. schapira, a. bochkarev, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, r. hui, s. brokx, structural genomics consortium (sgc)
Keywords: malaria, plasmodium falciparum, ligase, ubl conjugation pathway, structural genomics, structural genomics consortium, sgc
- 2rcy.pdb.
oxidoreductase 20-sep-07 2rcy
Mg Se
Title: crystal structure of plasmodium falciparum pyrroline carboxylate reductase (mal13p1.284) with nadp bound
Author: a. k. wernimont, j. lew, l. lin, h. ren, x. sun, c. khuu, a. hassanali, g. wasney, y. zhao, i. kozieradzki, m. schapira, a. bochkarev, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, r. hui, j. d. artz, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics, pyrroline reductase, oxidoreductase, structural genomics consortium, sgc
- 2vkl.pdb.
isomerase 20-dec-07 2vkl
Title: x-ray crystal structure of the intracellular chorismate mutase from mycobactrerium tuberculosis in complex with malate
Author: m. okvist, k. roderer, s. sasso, p. kast, u. krengel
Keywords: tuberculosis, intracellular, chorismate mutase, isomerase
- 2w19.pdb.
transferase/isomerase 16-oct-08 2w19
Title: non-covalent complex between dahp synthase and chorismate mutase from mycobacterium tuberculosis
Author: m. okvist, s. sasso, k. roderer, m. gamper, g. codoni, u. krengel, p. kast
Keywords: isomerase, transferase, drug target, enzyme catalysis
- 2w1a.pdb.
transferase/isomerase 16-oct-08 2w1a
Mn
Title: non-covalent complex between dahp synthase and chorismate mutase from mycobacterium tuberculosis with bound tsa
Author: m. okvist, s. sasso, k. roderer, m. gamper, g. codoni, u. krengel, p. kast
Keywords: isomerase, transferase, drug target, enzyme catalysis
- 2zpx.pdb.
cytokine 29-jul-08 2zpx
Title: tnf receptor subtype one-selective tnf mutant with antagonistic activity; r1anttnf-t8
Author: y. mukai, t. nakamura, y. yamagata, y. tsutsumi
Keywords: trimer, antagonistic activity, tnfr1 specific, phage display system, cytokine, cell membrane, lipoprotein, membrane, myristate, phosphoprotein, polymorphism, secreted, signal-anchor, transmembrane
- 3a2e.pdb.
plant protein 13-may-09 3a2e
Title: crystal structure of ginkbilobin-2, the novel antifungal protein from ginkgo biloba seeds
Author: t. miyakawa, k. miyazono, y. sawano, k. hatano, m. tanokura
Keywords: c-x8-c-x2-c motif, antifungal protein, embryo-abundant protein (eap), plant protein
- 3a3n.pdb.
hydrolase 15-jun-09 3a3n
Zn Ca
Title: crystal structure of complex between sa-subtilisin and tk- propeptide with deletion of the two c-terminal residues
Author: s. tanaka, h. matsumura, y. koga, k. takano, s. kanaya
Keywords: propeptide, thermococcus kodakaraensis, crystal structure, calcium, hydrolase, protease, secreted, serine protease, zymogen
- 3a3o.pdb.
hydrolase 15-jun-09 3a3o
Zn Ca
Title: crystal structure of complex between sa-subtilisin and tk- propeptide with deletion of the five c-terminal residues
Author: s. tanaka, h. matsumura, y. koga, k. takano, s. kanaya
Keywords: propeptide, thermococcus kodakaraensis, crystal structure, calcium, hydrolase, protease, secreted, serine protease, zymogen
- 3a3p.pdb.
hydrolase 15-jun-09 3a3p
Zn Ca
Title: crystal structure of complex between e201a/sa-subtilisin and tk-propeptide
Author: s. tanaka, h. matsumura, y. koga, k. takano, s. kanaya
Keywords: propeptide, thermococcus kodakaraensis, crystal structure, calcium, hydrolase, protease, secreted, serine protease, zymogen
- 3a59.pdb.
oxygen storage, oxygen transport 03-aug-09 3a59
Fe
Title: structure of hemoglobin from flightless bird (struthio camelus)
Author: s. m. jaimohan, m. d. naresh, a. b. mandal
Keywords: struthio camelus, hemoglobin, heme, iron, metal- binding, oxygen transport, polymorphism, transport, oxygen storage
- 3bp4.pdb.
immune system 18-dec-07 3bp4
Title: the high resolution crystal structure of hla-b*2705 in complex with a cathepsin a signal sequence peptide pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: transmembrane, ubl conjugation, disease mutation, glycation, immunoglobulin domain, pyrrolidone carboxylic acid, secreted, carboxypeptidase, hydrolase, lysosome, protease, zymogen, immune system
- 3bp7.pdb.
immune system 18-dec-07 3bp7
Title: the high resolution crystal structure of hla-b*2709 in complex with a cathepsin a signal sequence peptide, pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: protease, zymogen, immune system
- 3bvn.pdb.
immune system 07-jan-08 3bvn
Title: high resolution crystal structure of hla-b*1402 in complex with the latent membrane protein 2 peptide (lmp2) of epstein-barr virus
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: pyrrolidone carboxylic acid, secreted, alternative splicing, cytoplasm, host-virus interaction, membrane, phosphoprotein, transmembrane, ubl conjugation, immune system
- 3bxn.pdb.
immune system 14-jan-08 3bxn
Title: the high resolution crystal structure of hla-b*1402 complexed with a cathepsin a signal sequence peptide, pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: mhc, human leokocyte antigen, hla, hla-b14, hla-b*1402, hla-b1402, hla-b*14, pcata, cathepsin a, ankylosing spondylitis, autoimmunity, immune system
- 3dfa.pdb.
transferase 11-jun-08 3dfa
Title: crystal structure of kinase domain of calcium-dependent protein kinase cgd3_920 from cryptosporidium parvum
Author: a. k. wernimont, j. lew, y. h. lin, a. hassanali, c. khuu, z. alam, i. kozieradzki, d. cossar, a. bochkarev, c. h. arrowsmith, c. bountra, m. wilkstrom, a. m. edwards, r. hui, j. d. artz, t. xiao, structural genomics consortium (sgc)
Keywords: calmodulin, kinase, malaria, transferase, structural genomics, structural genomics consortium, sgc
- 3dgr.pdb.
transferase 15-jun-08 3dgr
Title: crystal structure of human nampt complexed with adp analogue
Author: m. ho, e. s. burgos, s. c. almo, v. l. schramm
Keywords: nmprtase, visfatin, adenosine 5'-(alpha, beta- methylene)diphosphate, alternative splicing, cytoplasm, glycosyltransferase, phosphoprotein, polymorphism, pyridine nucleotide biosynthesis
- 3dhd.pdb.
transferase 17-jun-08 3dhd
Mg
Title: crystal structure of human nampt complexed with nicotinamide mononucleotide and pyrophosphate
Author: m. ho, e. s. burgos, s. c. almo, v. l. schramm
Keywords: nmprtase, namprtase, visfatin, nmn, nicotinamide d-ribonucleotide, pyrophosphate, alternative splicing, cytoplasm, glycosyltransferase, phosphoprotein, polymorphism, pyridine nucleotide biosynthesis
- 3dhf.pdb.
transferase 17-jun-08 3dhf
Mg F Be
Title: crystal structure of phosphorylated mimic form of human nampt complexed with nicotinamide mononucleotide and pyrophosphate
Author: m. ho, e. s. burgos, s. c. almo, v. l. schramm
Keywords: phosphoprotein, polymorphism, pyridine nucleotide biosynthesis
- 3dkj.pdb.
transferase 25-jun-08 3dkj
Title: crystal structure of human nampt complexed with benzamide and phosphoribosyl pyrophosphate
Author: m. ho, e. s. burgos, s. c. almo, v. l. schramm
Keywords: pyridine nucleotide biosynthesis
- 3dkl.pdb.
transferase 25-jun-08 3dkl
Mg F Be
Title: crystal structure of phosphorylated mimic form of human nampt complexed with benzamide and phosphoribosyl pyrophosphate
Author: m. ho, e. s. burgos, s. c. almo, v. l. schramm
Keywords: polymorphism, pyridine nucleotide biosynthesis
- 3dmm.pdb.
immune system 01-jul-08 3dmm
Title: crystal structure of the cd8 alpha beta/h-2dd complex
Author: r. wang, k. natarajan, d. h. margulies
Keywords: glycoprotein, immune response, membrane, mhc i, phosphoprotein, transmembrane, immunoglobulin domain, secreted, envelope protein, alternative splicing, polymorphism, immune system
- 3dmy.pdb.
structural genomics, unknown function 01-jul-08 3dmy
Se
Title: crystal structure of a predicated acyl-coa synthetase from e.coli
Author: r. sugadev, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: 10300a, nysgrc, psi-ii, structural genomics, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, membrane, transmembrane, unknown function
- 3do7.pdb.
transcription/dna 03-jul-08 3do7
Title: x-ray structure of a nf-kb p52/relb/dna complex
Author: a. fusco, d. b. huang, d. miller, d. vu, g. ghosh
Keywords: transcription regulation, ubl conjugation, transcription/dna complex
- 3dwk.pdb.
transferase 22-jul-08 3dwk
Title: identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer
Author: a. l. lovering, l. de castro, n. c. j. strynadka
Keywords: cell shape, cell wall biogenesis/degradation, membrane, peptidoglycan synthesis, transferase
- 3dxk.pdb.
structural protein 24-jul-08 3dxk
Title: structure of bos taurus arp2/3 complex with bound inhibitor ck0944636
Author: b. j. nolen, n. tomasevic, a. russell, d. w. pierce, z. jia, j. hartman, r. sakowicz, t. d. pollard
Keywords: acetylation, actin-binding, atp-binding, cell projection, cytoplasm, cytoskeleton, nucleotide- binding, phosphoprotein, wd repeat, structural protein
- 3dxm.pdb.
structural protein 24-jul-08 3dxm
Cl Br
Title: structure of bos taurus arp2/3 complex with bound inhibitor ck0993548
Author: b. j. nolen, n. tomasevic, a. russell, d. w. pierce, z. jia, j. hartman, r. sakowicz, t. d. pollard
Keywords: structural protein
- 3dxn.pdb.
transferase 24-jul-08 3dxn
Title: crystal structure of the calcium-dependent kinase from toxoplasma gondii, 541.m00134, kinase domain.
Author: a. k. wernimont, j. lew, i. kozieradzki, d. cossar, g. wasney, y. h. lin, a. hassani, a. ali, m. schapira, a. bochkarev, c. h. arrowsmith, c. bountra, m. wikstrom, a. m. edwards, r. hui, j. d. artz, m. amani, structural genomics consortium (sgc)
Keywords: calcium dependent kinase, calmodulin, parasite, atp- binding, calcium, kinase, nucleotide-binding, transferase, structural genomics, structural genomics consortium, sgc
- 3dzo.pdb.
transferase 30-jul-08 3dzo
Mg
Title: crystal structure of a rhoptry kinase from toxoplasma gondii
Author: a. k. wernimont, a. lam, a. ali, y. h. lin, s. ni, m. ravichandran, g. wasney, m. vedadi, i. kozieradzki, m. schapira, a. bochkarev, m. wilkstrom, c. bountra, c. h. arrowsmith, a. m. edwards, d. sibley, r. hui, w. qiu, structural genomics consortium (sgc)
Keywords: toxoplasma, parasitic disease, transferase, structural genomics, structural genomics consortium, sgc
- 3e0q.pdb.
transferase 31-jul-08 3e0q
Br
Title: crystal structure of schistosoma mansoni purine nucleoside phosphorylase complexed with a novel monocyclic inhibitor
Author: h. m. pereira, v. berdini, m. r. ferri, a. cleasby, r. c. garratt
Keywords: glycosyltransferase, transferase
- 3e1a.pdb.
ribosome 03-aug-08 3e1a
(electron microscopy)
Title: structure of the 30s subunit and the trnas of e. coli ribosome in pre-accommodation state
Author: b. devkota, t. r. caulfield, r. -z. tan, s. c. harvey
Keywords: transcription, transcription regulation, transcription termination, translation regulation
- 3e1b.pdb.
ribosome 03-aug-08 3e1b
(electron microscopy)
Title: structure of the 50s subunit of e. coli ribosome in pre- accommodation state
Author: b. devkota, t. r. caulfield, r. -z. tan, s. c. harvey
Keywords: repressor, translation regulation
- 3e1c.pdb.
ribosome 03-aug-08 3e1c
(electron microscopy)
Title: structure of the 30s subunit and the trnas of e. coli ribosome in post-accommodation state
Author: b. devkota, t. r. caulfield, r. -z. tan, s. c. harvey
Keywords: translation, accommodation, trna selection
- 3e1d.pdb.
ribosome 03-aug-08 3e1d
(electron microscopy)
Title: structure of the 50s subunit of e. coli ribosome in post- accommodation state
Author: b. devkota, t. r. caulfield, r. -z. tan, s. c. harvey
Keywords: repressor, translation regulation
- 3e1q.pdb.
metal binding protein 04-aug-08 3e1q
Fe
Title: crystal structure of w133f variant e. coli bacterioferritn with iron.
Author: a. crow, t. l. lawson, a. lewin, g. r. moore, n. e. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e2w.pdb.
lyase 06-aug-08 3e2w
Zn
Title: h. influenzae beta-carbonic anhydrase, variant y181f with 1m bicarbonate
Author: r. s. rowlett, j. lee
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e2x.pdb.
lyase 06-aug-08 3e2x
Zn
Title: h. influenzae beta-carbonic anhydrase, variant v47a
Author: r. s. rowlett, j. lee
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e31.pdb.
lyase 05-aug-08 3e31
Zn
Title: h. influenzae beta-carbonic anhydrase, variant v47a
Author: r. s. rowlett, j. lee
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e3f.pdb.
lyase 07-aug-08 3e3f
Zn
Title: h. influenzae beta-carbonic anhydrase, variant v47a with 100 mm bicarbonate
Author: r. s. rowlett, m. mysliwiec
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e3g.pdb.
lyase 07-aug-08 3e3g
Zn
Title: h. influenzae beta-carbonic anhydrase, variant g41a
Author: r. s. rowlett, h. failing
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e3i.pdb.
lyase 07-aug-08 3e3i
Zn
Title: h. influenzae beta-carbonic anhydrase, variant g41a with 100 mm bicarbonate
Author: r. s. rowlett, h. failing
Keywords: allosteric site mutant, lyase, metal-binding, zinc
- 3e3n.pdb.
transferase 07-aug-08 3e3n
Title: the glycogen phosphorylase b r state- amp complex
Author: d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: transferase
- 3e3o.pdb.
transferase 07-aug-08 3e3o
Title: glycogen phosphorylase r state-imp complex
Author: d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: transferase
- 3e4d.pdb.
hydrolase 11-aug-08 3e4d
Cl Mg Se
Title: structural and kinetic study of an s-formylglutathione hydrolase from agrobacterium tumefaciens
Author: k. e. van straaten, c. f. gonzalez, r. b. valladares, x. xu, a. v. savchenko, d. a. r. sanders
Keywords: hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism
- 3e4w.pdb.
oxidoreductase 12-aug-08 3e4w
Fe
Title: crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Author: s. pakhomova, m. e. newcomer
Keywords: catalase, peroxidase, oxidoreductase
- 3e4y.pdb.
oxidoreductase 12-aug-08 3e4y
Fe
Title: crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. i2(1)2(1)2(1) crystal form
Author: s. pakhomova, m. e. newcomer
Keywords: catalase, peroxidase, oxidoreductase
- 3e4z.pdb.
hydrolase/hormone 12-aug-08 3e4z
Zn
Title: crystal structure of human insulin degrading enzyme in complex with insulin-like growth factor ii
Author: q. guo, m. manolopoulou, w. -j. tang
Keywords: igf-ii, degrading, complex, alternative splicing, glycoprotein, growth factor, mitogen, polymorphism, secreted, hydrolase/hormone complex
- 3e50.pdb.
hydrolase/hormone 12-aug-08 3e50
Zn
Title: crystal structure of human insulin degrading enzyme in complex with transforming growth factor-alpha
Author: q. guo, m. manolopoulou, w. -j. tang
Keywords: secreted, transmembrane, hydrolase/hormone complex
- 3e51.pdb.
transferase 12-aug-08 3e51
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. han, r. e. showalter, q. zhao, c. r. kissinger
Keywords: rna-directed rna polymerase, nucleotidyltransferase, nucleotide-binding, transcription, transferase
- 3e5n.pdb.
ligase 14-aug-08 3e5n
Title: crystal strucutre of d-alanine-d-alanine ligase from xanthomonas oryzae pv. oryzae kacc10331
Author: t. n. t. doan, j. k. kim, h. s. kim, y. j. ahn, j. g. kim, b. m. lee, l. w. kang
Keywords: magnesium, manganese, metal-binding, nucleotide-binding, peptidoglycan synthesis
- 3e5p.pdb.
isomerase 14-aug-08 3e5p
Title: crystal structure of alanine racemase from e.faecalis
Author: k. y. hwang, a. priyadarshi, e. h. lee, m. w. sung
Keywords: alanine racemase, plp, scp, isomerase, pyridoxal phosphate
- 3e5r.pdb.
oxidoreductase 14-aug-08 3e5r
Title: crystal structure and functional analysis of glyceraldehyde- 3-phosphate dehydrogenase from oryza sativa
Author: y. c. tien, y. h. lin, s. l. chang, c. j. chen
Keywords: glyceraldehyde-3-phosphate, oryza sativa, rice, oxidoreductase, cytoplasm, glycolysis, nad
- 3e6a.pdb.
oxidoreductase 15-aug-08 3e6a
Title: crystal structure and functional analysis of glyceraldehyde- 3-phosphate dehydrogenase from oryza sativa
Author: y. c. tien, y. h. lin, s. l. chang, c. j. chen
Keywords: glyceraldehyde-3-phosphate, oryza sativa, rice, sulfate, cytoplasm, glycolysis, nad, oxidoreductase
- 3e6e.pdb.
isomerase 15-aug-08 3e6e
Title: crystal structure of alanine racemase from e.faecalis complex with cycloserine
Author: k. y. hwang, a. priyadarshi, e. h. lee, m. w. sung
Keywords: scp, isomerase, pyridoxal phosphate
- 3e6f.pdb.
immune system 15-aug-08 3e6f
Title: mhc class i h-2dd heavy chain complexed with beta-2 microglobulin and a variant peptide, pa9, from the human immunodeficiency virus (bal) envelope glycoprotein 120
Author: r. wang, k. natarajan, h. robinson, d. h. margulies
Keywords: glycoprotein, immune response, membrane, mhc i, phosphoprotein, transmembrane, immunoglobulin domain, secreted, envelope protein, immune system
- 3e6g.pdb.
lyase 15-aug-08 3e6g
Title: crystal structure of xometc, a cystathionine c-lyase-like protein from xanthomonas oryzae pv.oryzae
Author: h. p. t. ngo, j. k. kim, h. s. kim, j. h. jung, y. j. ahn, j. g. kim, b. m. lee, h. w. kang, l. w. kang
Keywords: cystathionine lyase, reverse transsulfuration pathway, xanthomonas oryzae pv.oryzae, lyase
- 3e6h.pdb.
immune system 15-aug-08 3e6h
Title: mhc class i h-2dd heavy chain complexed with beta-2 microglobulin and a variant peptide, pi10, from the human immunodeficiency virus (bal) envelope glycoprotein 120
Author: r. wang, k. natarajan, h. robinson, d. h. margulies
Keywords: glycoprotein, immune response, membrane, mhc i, phosphoprotein, transmembrane, immunoglobulin domain, secreted, envelope protein, immune system
- 3e95.pdb.
ligase 21-aug-08 3e95
Title: crystal structure of the plasmodium falciparum ubiquitin conjugating enzyme complex, pfubc13-pfuev1a
Author: a. k. wernimont, a. lam, a. ali, s. brokx, y. h. lin, y. zhao, j. lew, m. ravichandran, g. wasney, m. vedadi, i. kozieradzki, m. schapira, a. bochkarev, m. wilkstrom, c. bountra, c. h. arrowsmith, a. m. edwards, r. hui, w. qiu, v. b. brand, structural genomics consortium (sgc)
Keywords: ligase, ubl conjugation pathway, structural genomics consortium, sgc
- 3e9p.pdb.
rna binding protein, splicing 22-aug-08 3e9p
Title: crystal structure of yeast prp8, residues 1827-2092
Author: v. pena, a. rozov, c. w. wahl
Keywords: mrna processing, mrna splicing, nucleus, phosphoprotein, rna-binding, spliceosome, rna binding protein, splicing
- 3eb0.pdb.
transferase 26-aug-08 3eb0
Title: crystal structure of cgd4_240 from cryptosporidium parvum in complex with indirubin e804
Author: a. k. wernimont, o. fedorov, a. lam, a. ali, y. zhao, j. lew, g. wasney, m. vedadi, i. kozieradzki, m. schapira, a. bochkarev, m. wilstrom, c. bountra, c. h. arrowsmith, a. m. edwards, r. hui, y. h. lin, structural genomics consortium (sgc)
Keywords: atp-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase, unknown function, structural genomics, structural genomics consortium, sgc
- 3eej.pdb.
oxidoreductase 04-sep-08 3eej
Title: candida glabrata dihydrofolate reductase complexed with 2,4- diamino-5-[3-methyl-3-(3-methoxy-5-phenylphenyl)prop-1- ynyl]-6-methylpyrimidine(ucp111d) and nadph
Author: j. liu, a. anderson
Keywords: oxidoreductase
- 3eek.pdb.
oxidoreductase 04-sep-08 3eek
Title: candida glabrata dihydrofolate reductase complexed with 2,4- diamino-5-[3-methyl-3-(3-methoxy-5-(4-methylphenyl)phenyl) prop-1-ynyl]-6-methylpyrimidine(ucp111d4m) and nadph
Author: j. liu, a. anderson
Keywords: oxidoreductase
- 3eel.pdb.
oxidoreductase 04-sep-08 3eel
Title: candida glabrata dihydrofolate reductase complexed with 2,4- diamino-5-[3-methyl-3-(3-methoxy-5-(3,5-dimethylphenyl) phenyl)prop-1-ynyl]-6-methylpyrimidine(ucp11153tm) and nadph
Author: j. liu, a. anderson
Keywords: oxidoreductase
- 3eem.pdb.
oxidoreductase 04-sep-08 3eem
Title: candida glabrata dihydrofolate reductase complexed with 2,4- diamino-5-[3-methyl-3-(3-methoxy-5-(2,6-dimethylphenyl) phenyl)prop-1-ynyl]-6-methylpyrimidine(ucp111d26m) and nadph
Author: j. liu, a. anderson
Keywords: oxidoreductase
- 3efz.pdb.
signaling protein 10-sep-08 3efz
Title: crystal structure of a 14-3-3 protein from cryptosporidium parvum (cgd1_2980)
Author: a. k. wernimont, a. dong, w. qiu, j. lew, g. a. wasney, m. vedadi, i. kozieradzki, y. zhao, h. ren, z. alam, y. h. lin, m. sundstrom, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, r. hui, s. brokx, structural genomics consortium (sgc)
Keywords: cell regulation, signaling protein, structural genomics, structural genomics consortium, sgc
- 3egy.pdb.
transferase 11-sep-08 3egy
Title: crystal structure of human thymidyalte synthase a191k with loop 181-197 stabilized in the inactive conformation
Author: l. l. lovelace, l. m. gibson, s. r. johnson, s. h. berger, l. lebioda
Keywords: nucleotide biosynthesis, transferase
- 3eh0.pdb.
transferase 11-sep-08 3eh0
Title: crystal structure of lpxd from escherichia coli
Author: c. m. bartling, c. r. h. raetz
Keywords: acyltransferase, left-handed parallel beta helix, acyl carrier protein, antibiotic resistance, lipid a biosynthesis, lipid synthesis, transferase
- 3ehi.pdb.
transferase 12-sep-08 3ehi
Title: crystal structure of human thymidyalte synthase m190k with loop 181-197 stabilized in the inactive conformation
Author: l. l. lovelace, l. m. gibson, s. r. johnson, s. h. berger, l. lebioda
Keywords: nucleotide biosynthesis, transferase
- 3eq0.pdb.
blood clotting/hydrolase inhibitor 30-sep-08 3eq0
Cl Na
Title: thrombin inhibitor
Author: b. baum, a. heine, g. klebe, t. steinmetzer
Keywords: secreted, serine protease, zymogen
- 3esf.pdb.
oxidoreductase 05-oct-08 3esf
Fe
Title: crystal structure of the enzyme fe-superoxide dismutase tbsodb2 from trypanosoma brucei
Author: j. f. r. bachega, m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 3eun.pdb.
electron transport 10-oct-08 3eun
Fe
Title: crystal structure of the 2[4fe-4s] c57a ferredoxin variant from allochromatium vinosum
Author: e. saridakis, i. m. mavridis
Keywords: ferredoxin, [4fe-4s] cluster, 4fe-4s, iron, iron-sulfur, metal-binding, transport
- 3ewi.pdb.
transferase 15-oct-08 3ewi
Title: structural analysis of the c-terminal domain of murine cmp- sialic acid synthetase
Author: m. oschlies, a. dickmanns, k. stummeyer, r. gerardy-schahn, r. ficner, a. k. muenster-kuehnel
Keywords: had-like, rossmannoid fold, nucleotidyltransferase, nucleus, transferase
- 3f4d.pdb.
hydrolase 31-oct-08 3f4d
Co
Title: crystal structure of organophosphorus hydrolase from geobacillus stearothermophilus strain 10
Author: r. hawwa, j. aikens, r. j. turner, b. santarsiero, a. mesecar
Keywords: amidohydrolase, binuclear metal enzyme
- 3f5o.pdb.
hydrolase 04-nov-08 3f5o
Cl
Title: crystal structure of hthem2(undecan-2-one-coa) complex
Author: h. xu, w. gong
Keywords: hydrolase
- 3f6w.pdb.
dna binding protein 06-nov-08 3f6w
Se
Title: xre-family like protein from pseudomonas syringae pv. tomato str. dc3000
Author: t. petrova, m. cuff, g. shackleford, m. gu, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, dna-binding
- 3f7f.pdb.
structural protein 08-nov-08 3f7f
Hg
Title: structure of nup120
Author: h. s. seo, y. ma, e. w. debler, g. blobel, a. hoelz
Keywords: translocation, structural protein
- 3f86.pdb.
unknown function 11-nov-08 3f86
Title: an alpha/beta-peptide helix bundle with a pure beta-amino acid core and a distinctive quaternary structure: gcn4pli derivative with beta residues at a and d heptad positions
Author: m. w. giuliano, w. s. horne, s. h. gellman
Keywords: helix bundle, foldamer, coiled coil, gcn4 derivative, unknown function
- 3f87.pdb.
unknown function 11-nov-08 3f87
I
Title: an alpha/beta-peptide helix bundle with a pure beta-amino acid core and a distinctive quarternary structure: gcn4pli derivative with beta residues at a and d heptad positions - higher symmetry crystal
Author: m. w. giuliano, w. s. horne, s. h. gellman
Keywords: helix bundle, foldamer, coiled coil, gcn4 derivative, unknown function
- 3f8y.pdb.
oxidoreductase 13-nov-08 3f8y
Title: correlations of human dihydrofolate reductase with structural data for human active site mutant enzyme complexes
Author: v. cody, j. pace, j. makin, j. piraino, s. f. queener, a. rosowsky
Keywords: nadp, one-carbon metabolism, oxidoreductase
- 3f8z.pdb.
oxidoreductase 13-nov-08 3f8z
Title: human dihydrofolate reductase structural data with active site mutant enzyme complexes
Author: v. cody, j. pace, j. makin, j. piraino, s. f. queener, a. rosowsky
Keywords: nadp, one-carbon metabolism, oxidoreductase
- 3f91.pdb.
oxidoreductase 13-nov-08 3f91
Title: structural data for human active site mutant enzyme complexes
Author: v. cody, j. pace, j. makin, j. piraino, s. f. queener, a. rosowsky
Keywords: nadp, one-carbon metabolism, oxidoreductase
- 3ffp.pdb.
lyase 04-dec-08 3ffp
Hg Zn
Title: x ray structure of the complex between carbonic anhydrase ii and lc inhibitors
Author: c. temperini, l. crocetti, a. scozzafava, c. t. supuran
Keywords: inhibitors, crystal structure, acetylation, cytoplasm, disease mutation, lyase, metal- binding, polymorphism, zinc
- 3fg1.pdb.
oxidoreductase 04-dec-08 3fg1
Cl Fe Ca
Title: crystal structure of delta413-417:gs lox
Author: d. b. neau, m. e. newcomer
Keywords: oxylipin biosynthesis
- 3fg3.pdb.
oxidoreductase 04-dec-08 3fg3
Cl Fe Ca
Title: crystal structure of delta413-417:gs i805w lox
Author: d. b. neau, m. e. newcomer
Keywords: oxylipin biosynthesis
- 3fg4.pdb.
oxidoreductase 04-dec-08 3fg4
Cl Fe Ca
Title: crystal structure of delta413-417:gs i805a lox
Author: d. b. neau, m. e. newcomer
Keywords: oxylipin biosynthesis
- 3fil.pdb.
protein binding 12-dec-08 3fil
Ca
Title: structural and energetic determinants for hyperstable variants of gb1 obtained from in-vitro evolution
Author: k. e. a. max, u. heinemann
Keywords: beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding, cell wall, igg- binding protein, peptidoglycan-anchor, secreted
- 3fl5.pdb.
transferase 18-dec-08 3fl5
Title: protein kinase ck2 in complex with the inhibitor quinalizarin
Author: m. mazzorana, c. franchin, r. battistutta
Keywords: atp-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase
- 3fnv.pdb.
metal binding protein 26-dec-08 3fnv
Fe
Title: title suppressed
Author: a. r. conlan, h. l. axelrod, a. e. cohen, e. c. abresch, d. yee, j. zuris, r. nechushtai, p. a. jennings, m. l. paddock
Keywords: metal binding protein
- 3fod.pdb.
protein fibril 29-dec-08 3fod
Title: ailsst segment from islet amyloid polypeptide
Author: j. j. w. wiltzius, m. r. sawaya, k. rajashankar, d. eisenberg
Keywords: protein fibril
- 3fp6.pdb.
hydrolase/hydrolase inhibitor 04-jan-09 3fp6
Ca
Title: anionic trypsin in complex with bovine pancreatic trypsin inhibitor (bpti) determined to the 1.49 a resolution limit
Author: e. zakharova, m. p. horvath, d. p. goldenberg
Keywords: calcium, digestion, hydrolase, metal-binding, protease, secreted, serine protease, zymogen, pharmaceutical, protease inhibitor, serine protease inhibitor, hydrolase/hydrolase inhibitor complex
- 3fp7.pdb.
hydrolase/hydrolase inhibitor 04-jan-09 3fp7
Ca
Title: anionic trypsin variant s195a in complex with bovine pancreatic trypsin inhibitor (bpti) cleaved at the scissile bond (lys15-ala16) determined to the 1.46 a resolution limit
Author: e. zakharova, m. p. horvath, d. p. goldenberg
Keywords: hydrolase/hydrolase inhibitor complex
- 3fp8.pdb.
hydrolase/hydrolase inhibitor 04-jan-09 3fp8
Ca
Title: anionic trypsin variant s195a in complex with bovine pancreatic trypsin inhibitor (bpti) determined to the 1.46 a resolution limit
Author: e. zakharova, m. p. horvath, d. p. goldenberg, k. curtice
Keywords: hydrolase/hydrolase inhibitor complex
- 3fpo.pdb.
protein fibril 05-jan-09 3fpo
Title: hssnnf segment from islet amyloid polypeptide (iapp or amylin)
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: protein fibril
- 3fqp.pdb.
protein fibril 07-jan-09 3fqp
Title: structure of an amyloid forming peptide vqivyk from the human tau protein (alternate polymorph)
Author: m. landau, d. eisenberg
Keywords: alzheimer disease, microtubule, phosphoprotein, polymorphism, neurofibrillary tangle protein, protein fibril
- 3fr1.pdb.
protein fibril 08-jan-09 3fr1
Cl
Title: nflvhs segment from islet amyloid polypeptide (iapp or amylin)
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: amidation, amyloid, cleavage on pair of basic residues, hormone, polymorphism, secreted, protein fibril
- 3fs6.pdb.
oxidoreductase 09-jan-09 3fs6
Title: correlations of inhibitor kinetics for pneumocystis jirovecii and human dihydrofolate reductase with structural data for human active site mutant enzyme complexes
Author: v. cody, j. pace, j. makin, j. piraino, s. f. queener, a. rosowsky
Keywords: nadp, one- carbon metabolism, oxidoreductase
- 3fth.pdb.
protein fibril 13-jan-09 3fth
Title: nflvhss segment from islet amyloid polypeptide (iapp or amylin)
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: protein fibril
- 3ftk.pdb.
protein fibril 13-jan-09 3ftk
Title: nvgsnty segment from islet amyloid polypeptide (iapp or amylin), hydrated crystal form
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: protein fibril
- 3ftl.pdb.
protein fibril 13-jan-09 3ftl
Title: nvgsnty segment from islet amyloid polypeptide (iapp or amylin), dehydrated crystal form
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: membrane protein, protein fibril
- 3ftr.pdb.
protein fibril 13-jan-09 3ftr
Title: structure of an amyloid forming peptide sstnvg from iapp (alternate polymorph)
Author: m. landau, d. eisenberg
Keywords: protein fibril
- 3fva.pdb.
protein fibril 15-jan-09 3fva
Title: nnqntf segment from elk prion
Author: m. i. apostol, d. eisenberg
Keywords: cell membrane, glycoprotein, golgi apparatus, gpi-anchor, lipoprotein, membrane, prion, protein fibril
- 3g5c.pdb.
membrane protein 04-feb-09 3g5c
Ca
Title: structural and biochemical studies on the ectodomain of human adam22
Author: h. liu, a. shim, x. chen, x. he
Keywords: cross-linked domain, alternative splicing, cell adhesion, cleavage on pair of basic residues, egf-like domain, glycoprotein, membrane, phosphoprotein, polymorphism, transmembrane, membrane protein
- 3g89.pdb.
transferase 11-feb-09 3g89
Title: t. thermophilus 16s rrna g527 methyltransferase in complex with adomet and amp in space group p61
Author: h. demirci, s. t. gregory, r. belardinelli, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: 16s rrna methyltransferase, translation, cytoplasm, rrna processing, s-adenosyl-l-methionine, transferase
- 3g8a.pdb.
transferase 11-feb-09 3g8a
Title: t. thermophilus 16s rrna g527 methyltransferase in complex with adohcy in space group p61
Author: h. demirci, s. t. gregory, r. belardinelli, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: 16s rrna methyltransferase, translation, cytoplasm, rrna processing, s-adenosyl-l-methionine, transferase
- 3g8b.pdb.
transferase 11-feb-09 3g8b
Title: t. thermophilus 16s rrna g527 methyltransferase in complex with adomet in space group i222
Author: h. demirci, s. t. gregory, r. belardinelli, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: 16s rrna methyltransferase, translation, cytoplasm, rrna processing, s-adenosyl-l-methionine, transferase
- 3g8e.pdb.
transferase 12-feb-09 3g8e
Title: crystal structure of rattus norvegicus visfatin/pbef/nampt in complex with an fk866-based inhibitor
Author: g. b. kang, m. h. bae, m. k. kim, i. im, y. c. kim, s. h. eom
Keywords: is001, cytoplasm, glycosyltransferase, nucleus, phosphoprotein, pyridine nucleotide biosynthesis, transferase
- 3g9k.pdb.
hydrolase 13-feb-09 3g9k
Se
Title: crystal structure of bacillus anthracis transpeptidase enzyme capd
Author: r. zhang, r. wu, s. richter, v. j. anderson, d. missiakas, a. joachimiak, the great lakes regional center of excellence (glrce), midwest center for structural genomics (mcsg)
Keywords: protein structure initiative, midwest center for structural genomics, mcsg
- 3ga9.pdb.
hydrolase 16-feb-09 3ga9
Se
Title: crystal structure of bacillus anthracis transpeptidase enzyme capd, crystal form ii
Author: r. zhang, r. wu, s. richter, v. j. anderson, d. missiakas, a. joachimiak, the great lakes regional center of excellence (glrce), midwest center for structural genomics (mcsg)
Keywords: protein structure initiative, midwest center for structural genomics, mcsg
- 3gep.pdb.
transferase 25-feb-09 3gep
Title: human hypoxanthine guanine phosphoribosyltranserfase in complex with (s)-9-(3-hydroxy-2-phosphonylmethoxypropyl) guanine
Author: l. w. guddat, d. t. keough, j. jersey
Keywords: transferase
- 3ggc.pdb.
transferase 27-feb-09 3ggc
Title: human hypoxanthine-guanine phosphoribosyltransferase in complex with 9-(2-phosphonoethoxyethyl)hypoxanthine
Author: l. w. guddat, d. t. keough, j. jersey
Keywords: phosphoribosyltransferase, acyclic nucleoside phosphonate, acetylation, cytoplasm, disease mutation, glycosyltransferase, gout, magnesium, metal- binding, transferase
- 3ggj.pdb.
transferase 28-feb-09 3ggj
Title: human hypoxanthine-guanine phosphoribosyltransferase in complex with 9-(2-phosphonoethoxyethyl)guanine
Author: l. w. guddat, d. t. keough, j. jersey
Keywords: anti-malarial chemotherapeutic, acyclic nucleoside phosphonate, acetylation, cytoplasm, disease mutation, glycosyltransferase, gout, magnesium, metal- binding, transferase
- 3gi8.pdb.
transport protein 05-mar-09 3gi8
Title: crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment
Author: p. l. shaffer, a. s. goehring, a. shankaranarayanan, e. gouaux
Keywords: transporter, antibody, cell membrane, membrane, transmembrane, transport protein
- 3gi9.pdb.
transport protein 05-mar-09 3gi9
Title: crystal structure of apct transporter bound to 7f11 monoclonal fab fragment
Author: p. l. shaffer, a. s. goehring, a. shankaranarayanan, e. gouaux
Keywords: transporter, antibody, cell membrane, membrane, transmembrane, transport protein
- 3gia.pdb.
transport protein 05-mar-09 3gia
Title: crystal structure of apct transporter
Author: p. l. shaffer, a. s. goehring, a. shankaranarayanan, e. gouaux
Keywords: transporter, cell membrane, membrane, transmembrane, transport protein
- 3gis.pdb.
blood clotting 06-mar-09 3gis
Ca
Title: crystal structure of na-free thrombin in complex with thrombomodulin
Author: t. e. adams, j. a. huntington
Keywords: polymorphism, protease, secreted, serine protease, zymogen, egf-like domain, hydroxylation, membrane, receptor, thrombophilia, transmembrane, blood clotting
- 3gqi.pdb.
transferase/transferase inhibitor 24-mar-09 3gqi
Mg V
Title: crystal structure of activated receptor tyrosine kinase in complex with substrates
Author: j. h. bae, e. d. lew, s. yuzawa, f. tome, i. lax, j. schlessinger
Keywords: tyrosine-protein kinase, calcium, hydrolase, lipid degradation, sh2 domain, sh3 domain, transducer, ubl conjugation, transferase/transferase inhibitor complex
- 3gql.pdb.
transferase/transferase inhibitor 24-mar-09 3gql
F
Title: crystal structure of activated receptor tyrosine kinase in complex with substrates
Author: j. h. bae, e. d. lew, s. yuzawa, f. tome, i. lax, j. schlessinger
Keywords: tyrosine-protein kinase, transferase/transferase inhibitor complex
- 3gue.pdb.
transferase 29-mar-09 3gue
Title: crystal structure of udp-glucose phosphorylase from trypanosoma brucei, (tb10.389.0330)
Author: a. k. wernimont, k. marino, y. h. lin, f. mackenzie, i. kozieradzki, d. cossar, y. zhao, m. schapira, a. bochkarev, c. h. arrowsmith, c. bountra, j. weigelt, a. m. edwards, m. a. j. ferguson, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: phosphatase, udp, glucose, structural genomics, structural genomics consortium, sgc, nucleotidyltransferase, transferase
- 3gzf.pdb.
viral protein 07-apr-09 3gzf
Title: structure of the c-terminal domain of nsp4 from feline coronavirus
Author: i. manolaridis, j. a. wojdyla, s. panjikar, e. j. snijder, a. e. gorbalenya, b. coutard, p. a. tucker
Keywords: fcov, nsp4, viral protein
- 3gzj.pdb.
hydrolase 07-apr-09 3gzj
Title: crystal structure of polyneuridine aldehyde esterase complexed with 16-epi-vellosimine
Author: l. yang, m. hill, m. wang, s. panjikar, j. stoeckigt
Keywords: alkaloid metabolism, hydrolase, serine esterase
- 3gzu.pdb.
virus 07-apr-09 3gzu
Zn
(electron microscopy)
Title: vp7 recoated rotavirus dlp
Author: j. z. chen, e. c. settembre, s. c. harrison, n. grigorieff
Keywords: vp7, vp6, vp2, 7rp, dlp, capsid protein, metal- binding, virion, zinc, core protein, rna-binding, icosaderal virus
- 3h16.pdb.
signaling protein 11-apr-09 3h16
Title: crystal structure of a bacteria tir domain, pdtir from paracoccus denitrificans
Author: s. l. chan, l. y. low, e. santelli, j. pascual
Keywords: signaling protein
- 3h2g.pdb.
hydrolase 14-apr-09 3h2g
Title: crystal structure of a rice cell wall degrading esterase lipa from xanthomonas oryzae
Author: g. aparna, a. chatterjee, r. v. sonti, r. sankaranarayanan
Keywords: xanthomonas oryzae pv. oryzae, esterase, cell wall degrading enzyme, rice, virulence, innate immune responses, pathogenesis, glycoside binding, hydrolase
- 3h2h.pdb.
hydrolase 14-apr-09 3h2h
Title: crystal structure of g231f mutant of the rice cell wall degrading esterase lipa from xanthomonas oryzae
Author: g. aparna, a. chatterjee, r. v. sonti, r. sankaranarayanan
Keywords: xanthomonas oryzae pv. oryzae, esterase, cell wall degrading enzyme, rice, virulence, innate immune responses, pathogenesis, glycoside binding, hydrolase
- 3h2i.pdb.
hydrolase 14-apr-09 3h2i
Title: crystal structure of n228w mutant of the rice cell wall degrading esterase lipa from xanthomonas oryzae
Author: g. aparna, a. chatterjee, r. v. sonti, r. sankaranarayanan
Keywords: xanthomonas oryzae pv. oryzae, esterase, cell wall degrading enzyme, rice, virulence, innate immune responses, pathogenesis, glycoside binding, hydrolase
- 3h2j.pdb.
hydrolase 14-apr-09 3h2j
Title: crystal structure of the rice cell wall degrading esterase lipa from xanthomonas oryzae
Author: g. aparna, a. chatterjee, r. v. sonti, r. sankaranarayanan
Keywords: xanthomonas oryzae pv. oryzae, esterase, cell wall degrading enzyme, rice, virulence, innate immune responses, pathogenesis, glycoside binding, hydrolase
- 3h2k.pdb.
hydrolase 14-apr-09 3h2k
Title: crystal structure of a ligand-bound form of the rice cell wall degrading esterase lipa from xanthomonas oryzae
Author: g. aparna, a. chatterjee, r. v. sonti, r. sankaranarayanan
Keywords: xanthomonas oryzae pv. oryzae, esterase, cell wall degrading enzyme, rice, virulence, innate immune responses, pathogenesis, glycoside binding, hydrolase
- 3h3v.pdb.
transferase/dna/rna 17-apr-09 3h3v
Mg Zn
Title: yeast rnap ii containing poly(a)-signal sequence in the active site
Author: s. dengl, p. cramer
Keywords: mrna processing
- 3h7c.pdb.
hydrolase 24-apr-09 3h7c
Cl Mg K Na Se
Title: crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
Author: e. s. burgie, c. a. bingman, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg, n- carbamoylputrescine, arginine decarboxylase pathway, hydrolase, polyamine biosynthesis
- 3h7m.pdb.
transferase 27-apr-09 3h7m
Na
Title: crystal structure of a histidine kinase sensor domain with similarity to periplasmic binding proteins
Author: j. cheung, m. le-khac, w. a. hendrickson
Keywords: kinase, phosphoprotein, transferase
- 3h7n.pdb.
structural protein 27-apr-09 3h7n
Title: structure of nup120
Author: h. s. seo, y. ma, e. w. debler, g. blobel, a. hoelz
Keywords: protein transport, translocation, transport, structural protein
- 3h91.pdb.
transcription 29-apr-09 3h91
Title: crystal structure of the complex of human chromobox homolog 2 (cbx2) and h3k27 peptide
Author: m. f. amaya, m. ravichandran, p. loppnau, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, j. min, h. ouyang, structural genomics consortium (sgc)
Keywords: cbx2, h3k27, structural genomics, structural genomics consortium, sgc, alternative splicing, chromatin regulator, dna-binding, nucleus, repressor, transcription, transcription regulation
- 3h94.pdb.
transport protein 30-apr-09 3h94
Ag
Title: crystal structure of the membrane fusion protein cusb from escherichia coli
Author: c. -c. su, f. yang, f. long, d. reyon, k. r. rajashankar, e. w. yu, m. d. routh, j. a. hoy, y. j. lee
Keywords: cuscfba copper/silver efflux system, , copper, copper transport, ion transport, transport, transport protein
- 3h9t.pdb.
transport protein 30-apr-09 3h9t
Cu
Title: crystal structure of the membrane fusion protein cusb from escherichia coli
Author: c. -c. su, f. yang, f. long, d. reyon, k. r. rajashankar, e. w. yu, m. d. routh, j. a. hoy, y. j. lee
Keywords: beta barrel, copper, copper transport, ion transport, transport, transport protein
- 3hfh.pdb.
transcription regulator 11-may-09 3hfh
Se
Title: crystal structure of tandem ff domains
Author: m. lu, j. yang, z. ren, s. subir, m. t. bedford, r. h. jacobson, j. s. mcmurray, x. chen
Keywords: activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor, transcription, transcription regulation, transcription regulator
- 3hfy.pdb.
transferase 13-may-09 3hfy
Zn
Title: mutant of trna-guanine transglycosylase (k52m)
Author: t. ritschel, g. klebe
Keywords: dimer interface, mutation, glycosyltransferase, metal- binding, queuosine biosynthesis, transferase, trna processing, zinc
- 3hga.pdb.
rna 13-may-09 3hga
Se
Title: crystal structure of 4-se-uridine derivatized rna
Author: jia sheng, soares alexei, zhen huang
- 3hgd.pdb.
dna 13-may-09 3hgd
Se
Title: crystal structure of 2-se-thymidine derivatized dna
Author: j. sheng, a. e. a. hassan, w. zhang, z. huang
- 3hgk.pdb.
transferase 14-may-09 3hgk
Title: crystal structure of effect protein avrptob complexed with kinase pto
Author: j. dong, f. fan, l. gu, j. chai
Keywords: transferase
- 3hgl.pdb.
ligase 14-may-09 3hgl
Se
Title: crystal of avrptob 121-205
Author: j. dong, f. xiao, f. fan, l. gu, h. cang, g. b. martin, j. chai
Keywords: hypersensitive response elicitation, ligase, secreted, ubl conjugation, ubl conjugation pathway, virulence
- 3hgn.pdb.
hydrolase 14-may-09 3hgn
D F Ca
(x-ray diffraction; neutron diffraction)
Title: structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor fr130180 determined by neutron crystallography
Author: t. tamada, t. kinoshita, r. kuroki, t. tada
Keywords: hydrolase, serine protease, calcium, disulfide bond, metal-binding, protease, secreted, zymogen
- 3hgp.pdb.
hydrolase 14-may-09 3hgp
F Ca
Title: structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor fr130180 determined by high resolution crystallography
Author: t. tamada, t. kinoshita, r. kuroki, t. tada
Keywords: hydrolase, serine protease, calcium, disulfide bond, metal-binding, protease, secreted, zymogen
- 3hgq.pdb.
transcription 14-may-09 3hgq
Se
Title: structural and functional studies of the yeast class ii hda1 hdac complex
Author: j. h. lee, k. maskos, r. huber
Keywords: swi2/snf2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription, transcription regulation
- 3hgt.pdb.
transcription 14-may-09 3hgt
Title: structural and functional studies of the yeast class ii hda1 hdac complex
Author: j. h. lee, k. maskos, r. huber
Keywords: swi2/snf2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription, transcription regulation
- 3hih.pdb.
transferase 20-may-09 3hih
Title: structure of human plk1-pbd with glycerol and sulfate in the phophopeptide binding site
Author: a. wlodawer, t. moulaei
Keywords: serine/threonine-protein kinase
- 3hjr.pdb.
hydrolase 22-may-09 3hjr
Ca
Title: crystal structure of serine protease of aeromonas sobria
Author: h. utsunomiya, h. tsuge, h. kobayashi, k. okamoto
Keywords: kexin, hydrolase, protease
- 3hk0.pdb.
signaling protein 22-may-09 3hk0
Title: crystal structure of the ra and ph domains of grb10
Author: s. r. hubbard, r. s. depetris, j. wu
Keywords: ra, ph, ras-associating, pleckstrin-homology, adapter protein, alternative splicing, phosphoprotein, polymorphism, sh2 domain, signaling protein
- 3hqk.pdb.
transport protein 07-jun-09 3hqk
Title: x-ray crystal structure of an arginine agmatine antiporter (adic) in complex with a fab fragment
Author: y. fang, h. jayaram, t. shane, l. kolmakova-partensky, f. wu, c. williams, y. xiong, c. miller
Keywords: transmembrane, transport, transport protein
- 3hr0.pdb.
transport protein 08-jun-09 3hr0
Title: crystal structure of homo sapiens conserved oligomeric golgi subunit 4
Author: b. c. richardson, d. ungar, a. nakamura, p. d. jeffrey, f. m. hughson
Keywords: intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst, alternative splicing, golgi apparatus, membrane, phosphoprotein, protein transport, transport, transport protein
- 3hsm.pdb.
signaling protein 10-jun-09 3hsm
Title: crystal structure of distal n-terminal beta-trefoil domain of ryanodine receptor type 1
Author: f. j. amador, s. liu, n. ishiyama, m. j. plevin, a. wilson, d. h. maclennan, m. ikura
Keywords: calcium, calcium channel, calcium transport, glycoprotein, ion transport, ionic channel, membrane, phosphoprotein, receptor, s-nitrosylation, transmembrane, transport, signaling protein
- 3hus.pdb.
blood clotting 15-jun-09 3hus
Ca
Title: crystal structure of recombinant gamma n308k fibrinogen fragment d with the peptide ligand gly-pro-arg-pro-amide
Author: s. t. lord, s. r. bowley, n. okumura
Keywords: pyrrolidone carboxylic acid, calcium, sulfation, blood clotting
- 3hv8.pdb.
hydrolase 15-jun-09 3hv8
Title: crystal structure of fimx eal domain from pseudomonas aeruginosa bound to c-di-gmp
Author: m. v. a. s. navarro, n. de, n. bae, h. sondermann
Keywords: biofilm, c-di-gmp, hydrolase
- 3hv9.pdb.
hydrolase 15-jun-09 3hv9
Title: crystal structure of fimx eal domain from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, n. bae, h. sondermann
Keywords: biofilm, c-di-gmp, hydrolase
- 3hva.pdb.
transferase 15-jun-09 3hva
Title: crystal structure of fimx ggdef domain from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, n. bae, h. sondermann
Keywords: biofilm, c-di-gmp, transferase
- 3hvb.pdb.
hydrolase 15-jun-09 3hvb
Title: crystal structure of the dual-domain ggdef-eal module of fimx from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, n. bae, h. sondermann
Keywords: biofilm, c-di-gmp, hydrolase
- 3hx2.pdb.
iron storage 19-jun-09 3hx2
Ca
Title: crystal structure of human ferritin phe167serfsx26 mutant. this file is a part 1/3 of the split entry and contains the copies 1 and 2 of the total six copies of the biological unit that are present in the crystallographic asymmetric unit. the entire structure contains six copies of the biological unit in the crystallographic asymmetric unit and is described in remark 400
Author: t. d. hurley, r. vidal
Keywords: disorder, iron, iron storage, metal- binding
- 3hx4.pdb.
transferase 19-jun-09 3hx4
Ca
Title: crystal structure of cdpk1 of toxoplasma gondii, tgme49_101440, in presence of calcium
Author: a. k. wernimont, j. d. artz, p. finnerty, t. xiao, h. he, f. mackenzie, g. sinestera, a. a. hassani, g. wasney, m. vedadi, s. lourido, a. bochkarev, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, d. l. sibley, r. hui, y. h. lin, structural genomics consortium (sgc)
Keywords: toxoplasma, calcium, kinase, protist, structural genomics, structural genomics consortium, sgc, atp-binding, nucleotide-binding, serine/threonine-protein kinase, transferase
- 3hx5.pdb.
iron storage 19-jun-09 3hx5
Ca
Title: crystal structure of human ferritin phe167serfsx26 mutant. this file is a part 2/3 of the split entry and contains the copies 3 and 4 of the total six copies of the biological unit that are present in the crystallographic asymmetric unit. the entire structure contains six copies of the biological unit in the crystallographic asymmetric unit and is described in remark 400
Author: t. d. hurley, r. vidal
Keywords: disorder, iron, iron storage, metal- binding
- 3hx7.pdb.
iron storage 19-jun-09 3hx7
Ca
Title: crystal structure of human ferritin phe167serfsx26 mutant. this file is a part 3/3 of the split entry and contains the copies 5 and 6 of the total six copies of the biological unit that are present in the crystallographic asymmetric unit. the entire structure contains six copies of the biological unit in the crystallographic asymmetric unit and is described in remark 400
Author: t. d. hurley, r. vidal
Keywords: disorder, iron, iron storage, metal- binding
- 3i12.pdb.
ligase 25-jun-09 3i12
Title: the crystal structure of the d-alanyl-alanine synthetase a from salmonella enterica subsp. enterica serovar typhimurium str. lt2
Author: r. zhang, n. maltseva, l. papazisi, w. anderson, a. joachimiak
Keywords: structural genomics, niaid structural genomics, center for structural genomics of infectious diseases
- 3i1c.pdb.
hydrolase 26-jun-09 3i1c
Title: crystal structure of a novel engineered diels-alderase: da_20_00_a74i
Author: a. r. lambert, b. l. stoddard
Keywords: calcium, hydrolase, metal-binding
- 3i2n.pdb.
transcription 29-jun-09 3i2n
Title: crystal structure of wd40 repeats protein wdr92
Author: m. f. amaya, z. li, h. he, a. seitova, s. ni, a. m. edwards, c. h. arrowsmith, weigelt, j. , c. bountra, a bochkarev, j. min, h. ouyang, structural genomics consortium (sgc)
Keywords: wdr92, structural genomics, structural genomics consortium, sgc, apoptosis, polymorphism, wd repeat, transcription
- 3i3c.pdb.
transcription 30-jun-09 3i3c
Na
Title: crystal structural of cbx5 chromo shadow domain
Author: m. f. amaya, z. li, y. li, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, j. min, h. ouyang, structural genomics consortium (sgc)
Keywords: chromo shadow domain, structural genomics, structural genomics consortium, sgc, centromere, nucleus, phosphoprotein, transcription
- 3i3r.pdb.
transferase 30-jun-09 3i3r
Cl
Title: x-ray structure dihydrofolate reductase/thymidylate synthase from babesia bovis at 2.35a resolution
Author: seattle structural genomics center for infectious disease (ssgsid)
Keywords: babesia bovis, dihydrofolate reductase, thymidylate synthase, methyltransferase, transferase, structural genomics, seattle structural genomics center for infectious disease
- 3i5a.pdb.
signaling protein 03-jul-09 3i5a
Sr
Title: crystal structure of full-length wpsr from pseudomonas syringae
Author: m. v. a. s. navarro, n. de, h. sondermann
Keywords: ggdef, chey, signaling protein
- 3i5b.pdb.
signaling protein 03-jul-09 3i5b
Title: crystal structure of the isolated ggdef domain of wpsr from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, h. sondermann
Keywords: ggdef, signaling protein
- 3i5c.pdb.
signaling protein 03-jul-09 3i5c
Mg
Title: crystal structure of a fusion protein containing the leucine zipper of gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
Author: m. v. a. s. navarro, n. de, h. sondermann
Keywords: ggdef, leucine zipper, signaling protein
- 3i5w.pdb.
antimicrobial protein 06-jul-09 3i5w
Cl
Title: crystal structure of human alpha-defensin 5 (mutant r13h)
Author: m. pazgier, w. lu
Keywords: hd5, antimicrobial peptide, antibiotic, antimicrobial, defensin, disulfide bond, fungicide, secreted, antimicrobial protein
- 3i98.pdb.
hydrolase 10-jul-09 3i98
Ca
Title: x-ray crystallographic structure of inorganic pyrophosphatase at 298k from archaeon thermococcus thioreducens
Author: r. c. hughes, l. coates, e. j. meehan, j. d. ng
Keywords: beta barrel, hydrolase
- 3ib2.pdb.
metal binding protein 15-jul-09 3ib2
Zn Fe
Title: structure of the complex of c-terminal half (c-lobe) of bovine lactoferrin with alpha-methyl-4-(2-methylpropyl) benzene acetic acid
Author: r. mir, g. vikram, r. prem kumar, m. sinha, n. singh, s. sharma, p. kaur, t. p. singh
Keywords: secreted, serine protease, transport
- 3ibz.pdb.
structural genomics, unknown function 17-jul-09 3ibz
Ca Se
Title: crystal structure of putative tellurium resistant like protein (terd) from streptomyces coelicolor a3(2)
Author: m. klimecka, m. chruszcz, m. cymborowski, x. xu, h. cui, a. joachimiak, a. edwards, a. savchenko, w. minor, midwest center for structural genomics (mcsg)
Keywords: stress protein, tellurium resistance, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3ic4.pdb.
oxidoreductase 17-jul-09 3ic4
Mg Se
Title: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus fulgidus
Author: r. zhang, x. xu, h. cui, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, oxidoreductase
- 3ids.pdb.
oxidoreductase 21-jul-09 3ids
Title: structure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from trypanosoma cruzi in complex with the irreversible iodoacetamide inhibitor
Author: t. l. balliano, r. v. c. guido, a. d. andricopulo, g. oliva
Keywords: protein-ligand complex,x-ray, glycolysis, nad, oxireductase, glycosome, oxidoreductase
- 3ie4.pdb.
immune system 22-jul-09 3ie4
Zn
Title: b-glucan binding domain of drosophila gnbp3 defines a novel family of pattern recognition receptor
Author: y. mishima, f. coste, c. kellenberger, a. roussel
Keywords: immune system
- 3ieb.pdb.
biosynthetic protein 22-jul-09 3ieb
Se
Title: crystal structure of 3-keto-l-gulonate-6-phosphate decarboxylase from vibrio cholerae o1 biovar el tor str. n16961
Author: b. nocek, n. maltseva, j. osipiuk, j. stam, w. anderson, a. joachimiak
Keywords: ulad, csgid, niaid, structural genomics, national institute of allergy and infectious diseases (niaid), center for structural genomics of infectious diseases, biosynthetic protein
- 3iew.pdb.
lyase 23-jul-09 3iew
Zn
Title: crystal structure of 2c-methyl-d-erythritol 2,4- cyclodiphosphate synthase from burkholderia pseudomallei with bound ctp and cdp
Author: b. l. staker
Keywords: structural genomics, isoprene biosynthesis, lyase, metal-binding, seattle structural genomics center for infectious disease, ssgcid
- 3if0.pdb.
hydrolase 23-jul-09 3if0
Title: crystal structure of the nanoarchaeum equitans trna splicing endonuclease structural subunit
Author: m. mitchell, h. li
Keywords: hydrolase
- 3ift.pdb.
oxidoreductase 25-jul-09 3ift
Title: crystal structure of glycine cleavage system protiein h from mycobacterium tuberculosis
Author: accelerated technologies center for gene to 3d structure (atcg3d), seattle structural genomics center for infectious disease (ssgcid)
Keywords: seattle structural genomics center for infectious disease, lipoyl, methylamine binding protein, oxidoreductase
- 3igt.pdb.
dna 28-jul-09 3igt
Title: a rare nucleotide base tautomer in the structure of an asymmetric dna junction
Author: p. khuu, p. s. ho
- 3ih6.pdb.
hydrolase 29-jul-09 3ih6
Se
Title: crystal structure of putative zinc protease from bordetella pertussis tohama i
Author: c. chang, g. chhor, j. bearden, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: bordetella pertussis tohama i, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, protease, hydrolase
- 3ihj.pdb.
transferase 30-jul-09 3ihj
Title: human alanine aminotransferase 2 in complex with plp
Author: m. wisniewska, m. i. siponen, c. h. arrowsmith, h. berglund, c. bountra, r. collins, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. karlberg, t. kotenyova, a. kotzsch, m. moche, t. k. nielsen, p. nordlund, t. nyman, c. persson, a. k. roos, p. schutz, l. svensson, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, h. schuler, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc, alternative splicing, aminotransferase, pyridoxal phosphate, transferase
- 3ihx.pdb.
transferase 31-jul-09 3ihx
Title: methyltransferase domain of human pr domain-containing protein 10
Author: m. f. amaya, l. dombrovski, s. ni, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. botchkarev, j. min, a. n. plotnikov, h. wu, structural genomics consortium (sgc)
Keywords: transcription regulation, zinc, zinc-finger
- 3ii8.pdb.
structural genomics, unknown function 31-jul-09 3ii8
Cl Mg Se
Title: crystal structure of putative diguanylate cyclase/phosphodiesterase complex with cycli di-gmp
Author: c. chang, x. xu, h. cui, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: putative diguanylate cyclase/phosphodiesterase (ggdef & eal domains), structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3iic.pdb.
hydrolase 31-jul-09 3iic
Se
Title: crystal structure of chec-like superfamily protein (yp_001095400.1) from shewanella sp. pv-4 at 2.13 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: chec-like superfamily protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
- 3iid.pdb.
gene regulation 31-jul-09 3iid
Title: crystal structure of the macro domain of human histone macroh2a1.1 in complex with adp-ribose (form a)
Author: m. hothorn, m. bortfeld, a. g. ladurner, k. scheffzek
Keywords: gene regulation
- 3iif.pdb.
gene regulation 31-jul-09 3iif
Title: crystal structure of the macro domain of human histone macroh2a1.1 in complex with adp-ribose (form b)
Author: m. hothorn, m. bortfeld, a. g. ladurner, k. scheffzek
Keywords: gene regulation
- 3iii.pdb.
hydrolase 01-aug-09 3iii
Cl Ni Se
Title: 1.95 angstrom crystal structure of coce/nond family hydrolase (sacol2612) from staphylococcus aureus
Author: t. osinski, m. chruszcz, m. j. domagalski, m. cymborowski, i. a. shumilin, t. skarina, o. onopriyenko, m. d. zimmerman, a. savchenko, a. edwards, w. f. anderson, w. minor, center for structural genomics of infectious diseases (csgid)
Keywords: hydrolase, center for structural genomics of infectious diseases, csgid
- 3ij6.pdb.
hydrolase 03-aug-09 3ij6
Zn Na
Title: crystal structure of an uncharacterized metal-dependent hydrolase from lactobacillus acidophilus
Author: y. patskovsky, r. toro, m. dickey, s. chang, j. m. sauder, f. m. raushel, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: amidohydrolase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3ik2.pdb.
hydrolase 05-aug-09 3ik2
Cl Ca
Title: crystal structure of a glycoside hydrolase family 44 endoglucanase produced by clostridium acetobutylium atcc 824
Author: c. d. warner, j. a. hoy, c. f. ford, r. b. honzatko, p. j. reilly
Keywords: hydrolase
- 3ik4.pdb.
isomerase 05-aug-09 3ik4
K
Title: crystal structure of mandelate racemase/muconate lactonizing protein from herpetosiphon aurantiacus
Author: y. patskovsky, r. toro, m. dickey, m. iizuka, j. m. sauder, j. a. gerlt, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: enolase, epimerase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, isomerase
- 3ikb.pdb.
structural genomics, unknown function 05-aug-09 3ikb
Se
Title: the structure of a conserved protein from streptococcus mutans ua159.
Author: k. tan, c. hatzos, k. buck, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: conserved protein, streptococcus mutans ua159, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3ike.pdb.
lyase 05-aug-09 3ike
Cl Mg Zn
Title: crystal structure of 2c-methyl-d-erythritol 2,4- cyclodiphosphate synthase from burkholderia pseudomallei with cytosine
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: ssgcid, seattle structural genomics center for infectious disease, fragment, isoprene biosynthesis, lyase, metal-binding
- 3ikf.pdb.
lyase 05-aug-09 3ikf
Cl K Zn
Title: crystal structure of 2c-methyl-d-erythritol 2,4- cyclodiphosphate synthase from burkholderia pseudomallei with fol fragment 717, imidazo[2,,1-b][1,3]thiazol-6- ylmethanol
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: ssgcid, seattle structural genomics center for infectious disease, fragment-based drug design, fbdd, isoprene biosynthesis, lyase, metal-binding
- 3ikh.pdb.
transferase 05-aug-09 3ikh
Se
Title: crystal structure of ribokinase in complex with atp and glycerol in the active site from klebsiella pneumoniae
Author: l. satyanarayana, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics
- 3ikz.pdb.
transferase 06-aug-09 3ikz
Title: crystal structure of phosphopantetheine adenylyltransferase from burkholderia pseudomallei
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: nucleotidyltransferase, transferase
- 3ilh.pdb.
transcription regulator 07-aug-09 3ilh
Title: crystal structure of two component response regulator from cytophaga hutchinsonii
Author: b. syed ibrahim, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: psi-ii, two component response regulator, protein structure initiative, crystal structure, structural genomics, new york sgx research center for structural genomics, transcription regulator
- 3ilv.pdb.
ligase 07-aug-09 3ilv
Se
Title: crystal structure of a glutamine-dependent nad(+) synthetase from cytophaga hutchinsonii
Author: k. palani, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: nucleotide-binding
- 3imf.pdb.
oxidoreductase 10-aug-09 3imf
Se
Title: 1.99 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor'
Author: a. s. halavaty, g. minasov, t. skarina, o. onopriyenko, e. gordon, s. peterson, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase, csgid
- 3imh.pdb.
isomerase 10-aug-09 3imh
Cl Mg
Title: crystal structure of galactose 1-epimerase from lactobacillus acidophilus ncfm
Author: y. patskovsky, r. toro, m. dickey, s. chang, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: psi-2, epimerase, galactose, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, isomerase
- 3imi.pdb.
structural genomics, unknown function 10-aug-09 3imi
Zn Se
Title: 2.01 angstrom resolution crystal structure of a hit family protein from bacillus anthracis str. 'ames ancestor'
Author: a. s. halavaty, z. wawrzak, t. skarina, o. onopriyenko, e. gordon, l. papazisi, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics, infectious diseases, center for structural genomics of infectious diseases, unknown function, csgid
- 3imm.pdb.
hydrolase 10-aug-09 3imm
Cl Na Se
Title: crystal structure of putative glycosyl hydrolase (yp_001301887.1) from parabacteroides distasonis atcc 8503 at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative glycosyl hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
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