Recent PDB releases or updates: week of 19 June 2009
- 1dwv.pdb.
oxidoreductase/transferase 14-dec-99 1dwv
Zn Fe
Title: murine inducible nitric oxide synthase oxygenase dimer n-hydroxyarginine and 4-amino tetrahydrobiopterin
Author: b. r. crane, a. s. arvai, e. d. getzoff, d. j. stuehr, j. a. tainer
Keywords: complex (oxidoreductase/transferase), nitric oxide monooxygenase, heme, dimer, intermediate, pterin, 4-amino-tetrahydrobiopterin
- 1dww.pdb.
oxidoreductase/transferase 14-dec-99 1dww
Zn Fe
Title: murine inducible nitric oxide synthase oxygenase dimer n-hydroxyarginine and dihydrobiopterin
Author: b. r. crane, a. s. arvai, e. d. getzoff, d. j. stuehr, j. a. tainer
Keywords: complex (oxidoreductase/transferase), nitric oxide monooxygenase, heme, dimer, intermediate, pterin, h2b, dihydrobiopterin
- 1dwx.pdb.
oxidoreductase/transferase 14-dec-99 1dwx
Fe
Title: murine inducible nitric oxide synthase oxygenase dimer n-hydroxyarginine and tetrahydrobiopterin
Author: b. r. crane, a. s. arvai, e. d. getzoff, d. j. stuehr, j. a. tainer
Keywords: complex (oxidoreductase/transferase), nitric oxide monooxygenase, heme, dimer, intermediate, pterin, h4b, tetrahydrobiopterin
- 1dxh.pdb.
transferase 05-jan-00 1dxh
Title: catabolic ornithine carbamoyltransferase from pseudomonas aeruginosa
Author: g. sainz, j. vicat, r. kahn, e. duee, c. tricot, v. stalon, o. dideberg
Keywords: transcarbamylase
- 1e2m.pdb.
transferase 23-may-00 1e2m
Title: hpt + hmtt
Author: j. vogt, l. scapozza, g. e. schulz
Keywords: null
- 1e2n.pdb.
transferase 23-may-00 1e2n
Title: hpt + hmtt
Author: j. vogt, l. scapozza, g. e. schulz
Keywords: null
- 1e2y.pdb.
oxidoreductase 30-may-00 1e2y
Cl Se
Title: tryparedoxin peroxidase from crithidia fasciculata
Author: m. s. alphey, c. s. bond, w. n. hunter
Keywords: oxidoreductase
- 1e33.pdb.
hydrolase 06-jun-00 1e33
Mg
Title: crystal structure of an arylsulfatase a mutant p426l
Author: r. von buelow, b. schmidt, t. dierks, k. von figura, i. uson
Keywords: cerebroside-3-sulfate hydrolysis, lysosomal enzyme, formylglycine
- 1e6q.pdb.
hydrolase 22-aug-00 1e6q
Zn
Title: myrosinase from sinapis alba with the bound transition state analogue gluco-tetrazole
Author: w. p. burmeister
Keywords: family 1 glycosyl hydrolase, glucosinolate, myrosinase, tim barrel, d-glucono-1, 5-lactone, transition state
- 1e6v.pdb.
oxidoreductase 23-aug-00 1e6v
Ni
Title: methyl-coenzyme m reductase from methanopyrus kandleri
Author: w. grabarse, u. ermler
Keywords: ni-enzyme, oxidoreductase, ni enzyme
- 1e6x.pdb.
family 1 glycosyl hydrolase 23-aug-00 1e6x
Zn
Title: myrosinase from sinapis alba with a bound transition state analogue,d-glucono-1,5-lactone
Author: w. p. burmeister
Keywords: glucosinolate, myrosinase, tim barrel, d-glucono-1, 5-lactone, transition state
- 1e70.pdb.
hydrolase 23-aug-00 1e70
F Zn
Title: 2-f-glucosylated myrosinase from sinapis alba
Author: w. p. burmeister
Keywords: family 1 glycosyl hydrolase, glucosinolate, myrosinase, tim barrel, glucosyl enzyme
- 1e71.pdb.
hydrolase 23-aug-00 1e71
Zn
Title: myrosinase from sinapis alba with bound ascorbate
Author: w. p. burmeister
Keywords: family 1 glycosyl hydrolase, glucosinolate, myrosinase, tim barrel, ascorbate, activation
- 1e72.pdb.
hydrolase 23-aug-00 1e72
Zn
Title: myrosinase from sinapis alba with bound gluco-hydroximolactam and sulfate or ascorbate
Author: w. p. burmeister
Keywords: family 1 glycosyl hydrolase, glucosinolate, myrosinase, tim barrel, ascorbate, activation, inhibitor, transition state analogue
- 1e73.pdb.
hydrolase 23-aug-00 1e73
F Zn
Title: 2-f-glucosylated myrosinase from sinapis alba with bound l-ascorbate
Author: w. p. burmeister
Keywords: family 1 glycosyl hydrolase, glucosinolate, myrosinase, tim barrel, ascorbate, activation, glucosyl enzyme
- 1e80.pdb.
hydrolase 15-sep-00 1e80
Title: endothiapepsin complex with renin inhibitor merck-kgaa-emd56133
Author: j. a. read, j. b. cooper, l. toldo, f. rippmann, p. raddatz
Keywords: hydrolase (acid proteinase)
- 1e8a.pdb.
antifungal protein 18-sep-00 1e8a
Ca
Title: the three-dimensional structure of human s100a12
Author: o. v. moroz, a. a. antson, g. n. murshudov, n. j. maitland, g. g. dodson, k. s. wilson, i. skibshoj, e. m. lukanidin, i. b. bronstein
Keywords: s100 protein, x-ray structure, ef-hand, calcium binding
- 1e93.pdb.
oxidoreductase 05-oct-00 1e93
Fe
Title: high resolution structure and biochemical properties of a recombinant catalase depleted in iron
Author: p. andreoletti, g. sainz, m. jaquinod, j. gagnon, h. m. jouve
Keywords: oxidoreductase (h2o2 acceptor), peroxidase, iron, hem, hydrogen peroxide, nadp
- 1gmx.pdb.
transferase 25-sep-01 1gmx
Title: escherichia coli glpe sulfurtransferase
Author: a. spallarossa, j. t. donahue, t. j. larson, m. bolognesi, d. bordo
Keywords: rhodanese, sulfurtransferase, glycerol metabolism
- 1gqh.pdb.
oxidoreductase 23-nov-01 1gqh
Cu
Title: quercetin 2,3-dioxygenase in complex with the inhibitor kojic acid
Author: r. a. steiner, b. w. dijkstra
Keywords: dioxygenase
- 1gu7.pdb.
oxidoreductase 24-jan-02 1gu7
Title: enoyl thioester reductase from candida tropicalis
Author: t. t. airenne, j. m. torkko, r. k. wierenga, j. k. hiltunen
Keywords: thioester reduction, fatty acids
- 1gxf.pdb.
oxidoreductase 04-apr-02 1gxf
Cl
Title: crystal structure of trypanosoma cruzi trypanothione reductase in complex with the inhibitor quinacrine mustard
Author: c. s. bond, m. r. peterson, t. j. vickers, a. h. fairlamb, w. n. hunter
Keywords: trypanothione reductase, fad dependent, disulphide oxidoreductase, quinacrine mustard, inhibitor, redox-active center, flavoprotein, fad, nadp
- 1hdh.pdb.
hydrolase 16-nov-00 1hdh
Ca
Title: arylsulfatase from pseudomonas aeruginosa
Author: i. boltes, h. czapinska, a. kahnert, r. v. buelow, t. dirks, b. schmidt, k. v. figura, m. a. kertesz, i. uson
Keywords: sulfatase, formylglycine hydrate
- 1hh6.pdb.
immune system 21-dec-00 1hh6
Title: anti-p24 (hiv-1) fab fragment cb41 complexed with a peptide
Author: m. hahn, h. wessner, j. schneider-mergener, w. hohne
Keywords: polyspecificity, crossreactivity, fab-fragment, peptide, hiv-1, immune system
- 1jum.pdb.
transcription 24-aug-01 1jum
Title: crystal structure of the multidrug binding transcriptional repressor qacr bound to the natural drug berberine
Author: m. a. schumacher, m. c. miller, s. grkovic, m. h. brown, r. a. skurray, r. g. brennan
Keywords: berberine, plant alkaloid, natural drug, qacr, multidrug recognition, s. aureus, transcription
- 1lkr.pdb.
hydrolase 20-jan-98 1lkr
I
Title: monoclinic hen egg white lysozyme iodide
Author: l. k. steinrauf
Keywords: glycosidase, lysozyme
- 1lky.pdb.
transcription 26-apr-02 1lky
Title: structure of the wild-type tel-sam polymer
Author: h. h. tran, c. a. kim, s. faham, j. u. bowie
Keywords: tyrosine kinase, transcriptional repression, drug design
- 1o9d.pdb.
protein-binding 12-dec-02 1o9d
Title: structural view of a fungal toxin acting on a 14-3-3 regulatory complex
Author: m. wurtele, c. jelich-ottmann, a. wittinghofer, c. oecking
Keywords: fusicoccin, 14-3-3 family, activating drug, plant plasma membrane (h+)atpase
- 1o9f.pdb.
protein-binding 12-dec-02 1o9f
Title: structural view of a fungal toxin acting on a 14-3-3 regulatory complex
Author: m. wurtele, c. jelich-ottmann, a. wittinghofer, c. oecking
Keywords: fusicoccin, 14-3-3 family, activating drug, plant plasma membrane (h+)atpase
- 1odb.pdb.
metal-binding protein 15-feb-03 1odb
Cu Ca
Title: the crystal structure of human s100a12 - copper complex
Author: o. v. moroz, a. a. antson, s. j. grist, n. j. maitland, g. g. dodson, k. s. wilson, e. m. lukanidin, i. b. bronstein
Keywords: calcium-binding protein, s100 protein, x-ray structure, ef-hand, calcium binding, host-parasite response
- 1oex.pdb.
hydrolase 31-mar-03 1oex
Title: atomic resolution structure of endothiapepsin in complex with a hydroxyethylene transition state analogue inhibitor h261
Author: l. coates, p. t. erskine, s. mall, r. s. gill, s. p. wood, d. a. a. myles, j. b. cooper
Keywords: aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement
- 1ofr.pdb.
lyase 18-apr-03 1ofr
Mn
Title: crystal structure of the tyrosine-regulated 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase from saccharomyces cerevisiae complexed with phenylalanine and manganese
Author: v. koenig, a. pfeil, g. heinrich, g. braus, t. r. schneider
Keywords: lyase, aromatic amino-acid biosynthesis
- 1ofz.pdb.
sugar-binding protein 22-apr-03 1ofz
Title: crystal structure of fungal lectin: six-bladed beta-propeller fold and novel fucose recognition mode for aleuria aurantia lectin
Author: m. wimmerova, e. mitchell, j. f. sanchez, c. gautier, a. imberty
Keywords: lectin, aal, fucose, aleuria aurantia lectin
- 1og0.pdb.
lyase 22-apr-03 1og0
Mn
Title: crystal structure of the mutant g226s of the tyrosine-regulated 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase from saccharomyces cerevisiae complexed with phenylalanine and manganese
Author: v. koenig, a. pfeil, g. heinrich, g. h. braus, t. r. schneider
Keywords: lyase
- 1ol1.pdb.
transferase/cell cycle 04-aug-03 1ol1
F
Title: cyclin a binding groove inhibitor h-cit-cit-leu-ile- (p-f-phe)-nh2
Author: g. kontopidis, m. andrews, c. mcinnes, a. cowan, h. powers, l. innes, a. plater, g. griffiths, d. paterson, d. zheleva, d. lane, s. green, m. walkinshaw, p. fischer
Keywords: complex(kinase/cyclin), cyclin a, inhibitor, ligand exchange, drug design, transfera serine/threonine-protein kinase, atp-binding, cell cycle, cell division, mitosis, phosphorylation, peptidomimetics
- 1qj3.pdb.
transferase 21-jun-99 1qj3
Na
Title: crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid
Author: h. kaeck, j. sandmark, k. j. gibson, y. lindqvist, g. schneider
Keywords: aminotransferase, pyridoxal-5'-phosphate, biotin biosynthesis
- 1qki.pdb.
oxidoreductase 20-jul-99 1qki
Title: x-ray structure of human glucose 6-phosphate dehydrogenase (variant canton r459l) complexed with structural nadp+
Author: s. w. n. au, s. gover, v. m. s. lam, m. j. adams
Keywords: oxidoredutase, (choh(d)-nadp), glucose metabolism
- 1qlh.pdb.
oxidoreductase 31-aug-99 1qlh
Zn
Title: horse liver alcohol dehydrogenase complexed to nad double mutant of gly 293 ala and pro 295 thr
Author: s. ramaswamy, b. v. plapp
Keywords: dehydrogenase, alcohol, nicotinamide coenzyme, double mutant
- 1qnl.pdb.
transferase 19-oct-99 1qnl
Title: amide receptor/negative regulator of the amidase operon of pseudomonas aeruginosa (amic) complexed with butyramide
Author: l. h. pearl, b. p. o'hara, s. m. roe
Keywords: gene regulator, receptor, kinase, repressor, transferase
- 1qom.pdb.
oxidoreductase 15-nov-99 1qom
Fe
Title: murine inducible nitric oxide synthase oxygenase dimer (delta 65) with swapped n-terminal hook
Author: b. r. crane, r. a. rosenfeld, a. s. arvai, j. a. tainer, d. j. stuehr, e. d. getzoff
Keywords: nitric oxide monooxygenase, heme, dimer, nos, swapped n- terminal hook, disulfide (oxidoreductase/substrate)
- 1tgx.pdb.
cytotoxin 24-nov-93 1tgx
Cl
Title: x-ray structure at 1.55 a of toxin gamma, a cardiotoxin from naja nigricollis venom. crystal packing reveals a model for insertion into membranes
Author: a. bilwes, b. rees, d. moras
- 1thq.pdb.
transferase 01-jun-04 1thq
Title: crystal structure of outer membrane enzyme pagp
Author: v. e. ahn, e. i. lo, c. k. engel, l. chen, p. m. hwang, l. e. kay, r. e. bishop, g. g. prive
Keywords: beta-barrel, outer membrane enzyme, pagp
- 1umr.pdb.
sugar-binding protein 28-aug-03 1umr
Title: crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of crotalus durissus terrificus
Author: m. t. murakami, s. p. zela, l. m. gava, s. michelan-duarte, a. c. o. cintra, r. k. arni
Keywords: c-type lectin, platelet, sugar-binding protein, activator, snake venom, crotalus durissus terrificus
- 1uos.pdb.
sugar-binding protein 22-sep-03 1uos
Title: the crystal structure of the snake venom toxin convulxin
Author: t. batuwangala, m. leduc, j. m. gibbins, c. bon, e. y. jones
Keywords: lectin, convulxin, c-type lectin, snake toxin, gpvi, structural proteomics in europe, spine, structural genomics
- 1uur.pdb.
transcription activator 09-jan-04 1uur
Title: structure of an activated dictyostelium stat in its dna-unbound form
Author: m. soler-lopez, c. petosa, m. fukuzawa, r. ravelli, j. g. williams, c. w. muller
Keywords: dictyostelium, stat, sh2, signal transduction, transducer, transcription factor
- 1uwa.pdb.
lyase 03-feb-04 1uwa
Mg
Title: l290f mutant rubisco from chlamydomonas
Author: s. karkehabadi, t. c. taylor, r. j. spreitzer, i. andersson
Keywords: rubisco, photosynthesis, photorespiration, oxidoreductase, monooxygenase, carbon dioxide fixation
- 1uwl.pdb.
hydrolase 05-feb-04 1uwl
Title: 1.76a structure of urocanate hydratase from pseudomonas putida
Author: d. kessler, j. retey, g. e. schulz
Keywords: urocanase, imidazolonepropionate, histidine metabolism, lyase
- 1uz8.pdb.
immune system 05-mar-04 1uz8
Title: anti-lewis x fab fragment in complex with lewis x
Author: a. m. m. van roon, n. s. pannu, j. p. m. de vrind, c. h. hokke, a. m. deelder, g. a. van der marel, j. h. van boom, j. p. abrahams
Keywords: antibody, anti-carbohydrate
- 1uzm.pdb.
oxidoreductase 14-mar-04 1uzm
Cs
Title: maba from mycobacterium tuberculosis
Author: m. cohen-gonsaud, s. ducasse, a. quemard, g. labesse
Keywords: oxidoreductase
- 1vyw.pdb.
transferase 07-may-04 1vyw
Title: structure of cdk2/cyclin a with pnu-292137
Author: p. pevarello, m. g. brasca, r. amici, p. orsini, g. traquandi, l. corti, c. piutti, p. sansonna, m. villa, b. s. pierce, m. pulici, p. giordano, k. martina, e. l. fritzen, r. a. nugent, e. casale, a. cameron, m. ciomei, f. roletto, a. isacchi, g. fogliatto, e. pesenti, w. pastori, a. marsiglio, k. l. leach, p. m. clare, f. fiorentini, m. varasi, a. vulpetti, m. a. warpehoski
Keywords: protein kinase/complex, protein kinase, transferase, serine/threonine-protein kinase, phosphorylation, cell division, cyclin
- 1w27.pdb.
lyase 29-jun-04 1w27
Title: phenylalanine ammonia-lyase (pal) from petroselinum crispum
Author: h. ritter, g. e. schulz
Keywords: phenylpropanoid metabolism, mio
- 1w5g.pdb.
structural protein 06-aug-04 1w5g
Title: an anti-parallel four helix bundle (acetimide modification).
Author: m. k. yadav, l. j. leman, c. d. stout, m. r. ghadiri
Keywords: four helix bundle, antiparallel four helix bundle
- 1way.pdb.
hydrolase 28-oct-04 1way
Cl
Title: active site thrombin inhibitors
Author: m. j. hartshorn, c. w. murray, a. cleasby, m. frederickson, i. j. tickle, h. jhoti
Keywords: vitamin k
- 1xi1.pdb.
transferase/dna 21-sep-04 1xi1
Mg
Title: phi29 dna polymerase ssdna complex, monoclinic crystal form
Author: s. kamtekar, a. j. berman, j. wang, j. m. lazaro, m. de vega, l. blanco, m. salas, t. a. steitz
Keywords: protein-primed, strand displacement, processivity, replication, transferase/dna complex
- 1xok.pdb.
viral protein/rna 06-oct-04 1xok
Br
Title: crystal structure of alfalfa mosaic virus rna 3'utr in complex with coat protein n terminal peptide
Author: l. m. guogas, d. j. filman, j. m. hogle, l. gehrke
Keywords: alpha helix, atypical rna duplex, viral protein/rna complex
- 1y7r.pdb.
structural genomics, unknown function 09-dec-04 1y7r
Se
Title: 1.7 a crystal structure of protein of unknown function sa2161 from meticillin-resistant staphylococcus aureus, probable acetyltransferase
Author: y. qiu, r. zhang, f. collart, d. holzle, a. joachimiak, a. kossiakoff, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, protein structure initiative, psi, midwest center for structural genomics, mcsg, unknown function
- 233d.pdb.
dna 16-oct-95 233d
Title: the crystal structure analysis of d(cgcgaasscgcg)2: a synthetic dna dodecamer duplex containing four 4'-thio-2'- deoxythymidine nucleotides
Author: t. j. boggon, e. l. hancox, k. e. mcauley-hecht, b. a. connolly, w. n. hunter, t. brown, r. t. walker, g. a. leonard
Keywords: double helix, modified
- 2byq.pdb.
receptor 03-aug-05 2byq
Cl
Title: crystal structure of aplysia californica achbp in complex with epibatidine
Author: s. b. hansen, g. sulzenbacher, t. huxford, p. marchot, p. taylor, y. bourne
Keywords: acetylcholine binding protein, nicotinic acetylcholine, conformational flexibility, agonist
- 2c74.pdb.
signaling protein/peptide 17-nov-05 2c74
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: signaling protein/peptide complex, 14-3-3, phosphoserine, phosphorylation, acetylation
- 2c9i.pdb.
luminescent protein 12-dec-05 2c9i
Title: structure of the fluorescent protein asfp499 from anemonia sulcata
Author: f. renzi, k. nienhaus, j. wiedenmann, b. vallone, g. u. nienhaus
Keywords: beta-barrel, bioluminescence, luminescence, luminescent protein
- 2c9j.pdb.
luminescent protein 12-dec-05 2c9j
Title: structure of the fluorescent protein cmfp512 at 1.35a from cerianthus membranaceus
Author: f. renzi, k. nienhaus, j. wiedenmann, b. vallone, g. u. nienhaus
Keywords: beta-barrel, bioluminescence, luminescence, luminescent protein
- 2cb0.pdb.
isomerase 23-dec-05 2cb0
Se
Title: crystal structure of glucosamine 6-phosphate deaminase from pyrococcus furiosus
Author: k. j. kim, m. h. kim, b. s. kang
Keywords: glucosamine 6-phosphate deaminase, chitin degradation, aldose-ketose isomerase
- 2cd1.pdb.
nucleic acid 19-jan-06 2cd1
(solution NMR)
Title: refinement of p4 stemloop structure using residual dipolar coupling data
Author: m. schmitz
Keywords: p4 stem, ribonuclease p, ribonucleic acid, ribozyme, transfer rna processing, nucleic acid
- 2cd3.pdb.
nucleic acid 19-jan-06 2cd3
(solution NMR)
Title: refinement of rnase p p4 stemloop structure using residual dipolar coupling data - c70u mutant
Author: m. schmitz
Keywords: c70u mutant, metal binding site, p4 stem, ribonuclease p, ribonucleic acid, ribozyme, transfer rna processing
- 2cd5.pdb.
nucleic acid 19-jan-06 2cd5
Co
(solution NMR)
Title: refinement of rnase p p4 stemloop structure using residual dipolar couplings - cobalt(iii) hexammine complex structure
Author: m. schmitz
Keywords: metal binding site, metal complex, p4 stem, ribonuclease p, ribonucleic acid, ribozyme, transfer rna processing, nucleic acid
- 2cd6.pdb.
nucleic acid 19-jan-06 2cd6
Co
(solution NMR)
Title: refinement of rnase p p4 stemloop structure using residual dipolar coupling data, c70u mutant cobalt(iii) hexammine complex
Author: m. schmitz
Keywords: cobalt (iii hexammine complex, metal binding site, metal complex, p4 stem, ribonuclease p, ribonucleic acid, ribozyme, transfer rna processing, nucleic acid
- 2ewf.pdb.
hydrolase 03-nov-05 2ewf
Br
Title: crystal structure of the site-specific dna nickase n.bspd6i
Author: g. s. kachalova, h. d. bartunik, r. i. artyukh, e. a. rogulin, t. a. perevyazova, l. a. zheleznaya, n. i. matvienko
Keywords: beta-alpha-barrel, hydrolase
- 2fhd.pdb.
cell cycle 23-dec-05 2fhd
Se
Title: crystal structure of crb2 tandem tudor domains
Author: j. lee, m. v. botuyan, j. r. thompson, g. mer
Keywords: cell cycle
- 2h36.pdb.
unknown function 22-may-06 2h36
Title: structure of orf14 from sulfolobus islandicus filamentous virus (sifv)
Author: a. goulet, s. spinelli, c. cambillau
Keywords: virus, unknown function
- 2k6b.pdb.
apoptosis 07-jul-08 2k6b
(solution NMR)
Title: solution structure of 1-112 fragment of human programmed cell death 5 protein
Author: y. feng, h. yao, d. liu, j. wang
Keywords: apoptosis, phosphoprotein
- 2k6l.pdb.
unknown function 11-jul-08 2k6l
(solution NMR)
Title: the solution structure of xacb0070 from xanthonomas axonopodis pv citri reveals this new protein is a member of the rhh family of transcriptional repressors
Author: m. gallo, d. o. cicero, i. amata, t. eliseo, m. paci, a. spisni, e. ferrari, t. a. pertinhez, c. s. farah
Keywords: rhh, structural proteomics, nmr, plasmid, hypothetical dna binding protein, unknown function
- 2k6p.pdb.
unknown function 15-jul-08 2k6p
(solution NMR)
Title: solution structure of hypothetical protein, hp1423
Author: j. kim, s. park, k. lee, w. son, n. sohn, b. lee
Keywords: nmr, alpha-l motif, rna-binding, unknown function
- 2k6r.pdb.
de novo protein 18-jul-08 2k6r
(solution NMR)
Title: protein folding on a highly rugged landscape: experimental observation of glassy dynamics and structural frustration
Author: m. sadqi, e. de alba, r. perez-jimenez, j. m. sanchez-ruiz, v. munoz
Keywords: non-natural amino acids, de novo protein design, rugged folding energy landscape, structural frustration
- 2k6s.pdb.
protein transport 18-jul-08 2k6s
(solution NMR)
Title: structure of rab11-fip2 c-terminal coiled-coil domain
Author: j. wei, y. liu, j. d. baleja
Keywords: coiled-coil domain, solution structure, protein transport
- 2k76.pdb.
de novo protein 03-aug-08 2k76
(solution NMR)
Title: solution structure of a paralog-specific mena binder by nmr
Author: n. m. link, c. hunke, j. eichler, p. bayer
Keywords: miniature protein, app, beta-hairpin, acta homolog, de novo protein
- 2k85.pdb.
protein binding 02-sep-08 2k85
(solution NMR)
Title: p190-a rhogap ff1 domain
Author: r. bonet, l. ruiz, p. martin-malpartida, m. macias
Keywords: transcription regulation, protein binding
- 2kb7.pdb.
membrane protein 21-nov-08 2kb7
(solution NMR; solid-state NMR)
Title: hybrid solution and solid-state nmr structure of monomeric phospholamban in lipid bilayers
Author: n. j. traaseth, l. shi, r. verardi, g. veglia
Keywords: solution nmr, solid-state nmr, pisema, hybrid method, lipid bilayers, topology, membrane protein
- 2kcr.pdb.
toxin 29-dec-08 2kcr
(solution NMR)
Title: solution structure of anntoxin
Author: j. hong, d. you, r. lai, d. lin
Keywords: toxin
- 2kdh.pdb.
structural protein 09-jan-09 2kdh
Ca
(solution NMR)
Title: the solution structure of human cardiac troponin c in complex with the green tea polyphenol; (-)- epigallocatechin-3-gallate
Author: i. m. robertson, m. x. li, b. d. sykes
Keywords: ca2+ sensitizer, troponin c, egcg, acetylation, calcium, cardiomyopathy, disease mutation, muscle protein, polymorphism, structural protein
- 2ke1.pdb.
gene regulation 22-jan-09 2ke1
Zn
(solution NMR)
Title: molecular basis of non-modified histone h3 tail recognition by the first phd finger of autoimmune regulator
Author: f. chignola, m. gaetani, a. rebane, t. org, l. mollica, c. zucchelli, a. spitaleri, v. mannella, p. peterson, g. musco
Keywords: phd finger, histone h3, disease mutation, metal- binding, nucleus, transcription, transcription regulation, zinc, zinc-finger, gene regulation
- 2kei.pdb.
transcription/dna 30-jan-09 2kei
(solution NMR)
Title: refined solution structure of a dimer of lac repressor dna- binding domain complexed to its natural operator o1
Author: j. romanuka, g. folkers, n. biris, e. tishchenko, h. wienk, r. kaptein, r. boelens
Keywords: lac operators, nmr, protein-dna complex, dna- binding, repressor, transcription, transcription regulation, transcription/dna complex
- 2kej.pdb.
transcription/dna 30-jan-09 2kej
(solution NMR)
Title: solution structure of a dimer of lac repressor dna-binding domain complexed to its natural operator o2
Author: j. romanuka, g. folkers, n. biris, e. tishchenko, h. wienk, r. kaptein, r. boelens
Keywords: lac operators, nmr, protein-dna complex, dna- binding, repressor, transcription, transcription regulation, transcription/dna complex
- 2kek.pdb.
transcription/dna 30-jan-09 2kek
(solution NMR)
Title: solution structure of a dimer of lac repressor dna-binding domain complexed to its natural operator o3
Author: j. romanuka, g. folkers, n. biris, e. tishchenko, h. wienk, r. kaptein, r. boelens
Keywords: lac operators, nmr, protein-dna complex, dna- binding, repressor, transcription, transcription regulation, transcription/dna complex
- 2kel.pdb.
transcription repressor 30-jan-09 2kel
(solution NMR)
Title: structure of the transcription regulator svtr from the hyperthermophilic archaeal virus sirv1
Author: f. guilliere, a. kessler, n. peixeiro, g. sezonov, d. prangishvili, m. delepierre, j. i. guijarro
Keywords: homodimer, ribbon-helix-helix, transcription repressor
- 2kfl.pdb.
unknown function 24-feb-09 2kfl
(solution NMR)
Title: tammar wallaby prion protein (121-230)
Author: b. christen, s. hornemann, f. f. damberger, k. wuthrich
Keywords: cell membrane, membrane, prion, unknown function
- 2kfm.pdb.
unknown function 24-feb-09 2kfm
(solution NMR)
Title: mouse prion protein (121-231) with mutations y225a and y226a
Author: b. christen, s. hornemann, f. f. damberger, k. wuthrich
Keywords: mutation y225a,y226a, long-range effect, cell membrane, glycoprotein, golgi apparatus, gpi- anchor, hydroxylation, lipoprotein, membrane, polymorphism, prion, membrane protein, unknown function
- 2kfo.pdb.
unknown function 24-feb-09 2kfo
(solution NMR)
Title: mouse prion protein (121-231) with mutation v166a
Author: b. christen, s. hornemann, f. f. damberger, k. wuthrich
Keywords: mutation v166a, long-range effect, cell membrane, glycoprotein, golgi apparatus, gpi-anchor, hydroxylation, lipoprotein, membrane, polymorphism, prion, unknown function
- 2kfu.pdb.
protein binding 27-feb-09 2kfu
(solution NMR)
Title: pknb-phosphorylated rv1827
Author: s. j. smerdon, t. j. nott, g. kelly
Keywords: mycobacterium tuberculosis, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding
- 2kgg.pdb.
metal binding protein 11-mar-09 2kgg
Zn
(solution NMR)
Title: solution structure of jarid1a c-terminal phd finger
Author: j. song, z. wang, d. j. patel
Keywords: transcription, transcription regulation, zinc, zinc-finger, metal binding protein
- 2kgi.pdb.
metal binding protein 12-mar-09 2kgi
Zn
(solution NMR)
Title: solution structure of jarid1a c-terminal phd finger in complex with h3(1-9)k4me3
Author: j. song, z. wang, d. j. patel
Keywords: transcription, transcription regulation, zinc, zinc-finger, metal binding protein
- 2khd.pdb.
structural genomics, unknown function 02-apr-09 2khd
(solution NMR)
Title: solution nmr structure of vc_a0919 from vibrio cholerae. northeast structural genomics consortium target vcr52
Author: t. a. ramelot, j. r. cort, h. wang, c. ciccosanti, m. jiang, j. liu, b. rost, g. v. t. swapna, t. b. acton, r. xiao, j. k. everett, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: structural genomics, unknown function, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2kji.pdb.
hormone 28-may-09 2kji
(solution NMR)
Title: a divergent ins protein in c. elegans structurally resemble insulin and activates the human insulin receptor
Author: q. x. hua, s. h. nakarawa, r. wilken, r. r. ramos, w. h. jia, j. bass, m. a. weiss
Keywords: insulin like peptide, c. elegans, folding, nmr, ins-6, cleavage on pair of basic residues, disulfide bond, secreted
- 2o3c.pdb.
dna binding protein 01-dec-06 2o3c
Pb
Title: crystal structure of zebrafish ape
Author: m. m. georgiadis, r. k. gaur, s. delaplane, j. svenson
Keywords: endonuclease, dna binding protein
- 2o3h.pdb.
lyase 01-dec-06 2o3h
Sm
Title: crystal structure of the human c65a ape
Author: m. m. georgiadis, r. k. gaur, s. delaplane, j. svenson
Keywords: endonuclease, lyase
- 2p14.pdb.
hydrolase 02-mar-07 2p14
Title: crystal structure of small subunit (r.bspd6i2) of the heterodimeric restriction endonuclease r.bspd6i
Author: g. s. kachalova, h. d. bartunik, r. i. artyukh, e. a. rogulin, a. k. yunusova, l. a. zheleznaya, n. i. matvienko
Keywords: hydrolase
- 2qgx.pdb.
ligase 29-jun-07 2qgx
Title: ubiquitin-conjugating enzyme e2q
Author: d. neculai, g. v. avvakumov, s. xue, j. r. walker, f. mackenzie, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, f. sicheri, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: ubc, structural genomics, structural genomics consortium, sgc, ligase
- 2qmi.pdb.
hydrolase 16-jul-07 2qmi
Lu
Title: structure of the octameric penicillin-binding protein homologue from pyrococcus abyssi
Author: v. delfosse, e. girard, l. moulinier, p. schultz, c. mayer
Keywords: octamer, lu-hpdo3a, pbp, archaea, hydrolase
- 2qur.pdb.
signaling protein, transferase 06-aug-07 2qur
Title: crystal structure of f327a/k285p mutant of camp-dependent protein kinase
Author: s. s. taylor, j. yang, j. wu
Keywords: camp-dependent protein kinase, f327a/k285p mutant, isoform specific regulation, agc- specific insert, signaling protein, transferase
- 2rhh.pdb.
cell cycle 09-oct-07 2rhh
Title: bacillus subtilis ftsz with bound sulfate ion
Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
- 2rhj.pdb.
cell cycle 09-oct-07 2rhj
Na
Title: bacillus subtilis ftsz with two sulfate ions and sodium ion in the nucleotide pocket
Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
- 2rhl.pdb.
cell cycle 09-oct-07 2rhl
Title: bacillus subtilis ftsz ncs dimer with bound gdp
Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
- 2rho.pdb.
cell cycle 09-oct-07 2rho
Title: bacillus subtilis ftsz ncs dimer with bound gdp and gtp- gamma-s
Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
- 2rkw.pdb.
hydrolase 18-oct-07 2rkw
Title: intermediate position of atp on its trail to the binding pocket inside the subunit b mutant r416w of the energy converter a1ao atp synthase
Author: a. kumar, m. s. s. manimekalai, a. m. balakrishna, c. hunke, g. gruber
Keywords: atp synthesis, hydrogen ion transport, ion transport, transport
- 2rpn.pdb.
structural protein 12-jun-08 2rpn
(solution NMR)
Title: a crucial role for high intrinsic specificity in the function of yeast sh3 domains
Author: e. j. stollar, b. garcia, a. chong, j. forman-kay, a. davidson
Keywords: extended peptide, 3-10 helix, acetylation, actin-binding, cytoplasm, cytoskeleton, phosphoprotein, structural protein
- 2rps.pdb.
immune system 28-jul-08 2rps
(solution NMR)
Title: solution structure of a novel insect chemokine isolated from integument
Author: m. kamiya, s. nakatogawa, y. oda, t. kamijima, t. aizawa, m. demura, y. hayakawa, k. kawano
Keywords: immune system
- 2v08.pdb.
photosynthesis 10-may-07 2v08
Cl Zn Fe
Title: structure of wild-type phormidium laminosum cytochrome c6
Author: j. a. r. worrall, b. g. schlarb-ridley, t. reda, m. j. marcaida, r. j. moorlen, j. wastl, j. hirst, d. s. bendall, b. f. luisi, c. j. howe
Keywords: photosynthesis, cyano-bacteria, electron-transfer
- 2v4q.pdb.
transferase 26-sep-08 2v4q
Ca
Title: post-insertion complex of the y-family dna polymerase dpo4 with m1dg containing template dna
Author: r. l. eoff, j. b. stafford, j. szekely, c. j. rizzo, m. egli, f. p. guengerich, l. j. marnett
Keywords: dna-binding, metal-binding, dna replication, mutator protein, nucleotidyltransferase, dna adduct, dna damage, dna repair, transferase, dpo4, m1dg, cytoplasm, magnesium, polymerase
- 2v4r.pdb.
transferase 26-sep-08 2v4r
Ca
Title: non-productive complex of the y-family dna polymerase dpo4 with dgtp skipping the m1dg adduct to pair with the next template cytosine
Author: r. l. eoff, j. b. stafford, j. szekely, c. j. rizzo, m. egli, f. p. guengerich, l. j. marnett
Keywords: dna-binding, metal-binding, dna replication, mutator protein, nucleotidyltransferase, dna adduct, dna damage, dna repair, transferase, dpo4, m1dg, cytoplasm, magnesium, polymerase
- 2v54.pdb.
transferase 01-oct-08 2v54
Mg
Title: crystal structure of vaccinia virus thymidylate kinase bound to tdp
Author: c. caillat, d. topalis, l. a. agrofoglio, s. pochet, j. balzarini, d. deville-bonne, p. meyer
Keywords: atp-binding, nucleotide-binding, kinase, poxvirus, tmp kinase, transferase
- 2vae.pdb.
fluorescent protein 31-aug-07 2vae
Title: fast maturing red fluorescent protein, dsred.t4
Author: d. e. strongin, b. bevis, n. khuong, m. e. downing, r. l. strack, k. sundaram, b. s. glick, r. j. keenan
Keywords: fast maturing, fluorescent protein, dsred, gfp-like, chromophore, luminescence
- 2vk2.pdb.
transport 16-dec-07 2vk2
Title: crystal structure of a galactofuranose binding protein
Author: a. muller, r. horler, g. h. thomas, k. s. wilson
Keywords: galactofuranose, transport, periplasm
- 2vla.pdb.
hydrolase 11-jan-08 2vla
Na
Title: crystal structure of restriction endonuclease bpuji recognition domain in complex with cognate dna
Author: r. sukackaite, s. grazulis, m. bochtler, v. siksnys
Keywords: hydrolase, endonuclease, dna recognition, helix-turn-helix
- 2vqr.pdb.
hydrolase 18-mar-08 2vqr
Mn Na Ca
Title: crystal structure of a phosphonate monoester hydrolase from rhizobium leguminosarum: a new member of the alkaline phosphatase superfamily
Author: s. jonas, m. hyvonen, f. hollfelder
Keywords: hydrolase, plasmid, formylglycine, phosphodiesterase, alkaline phosphatase superfamily
- 2vum.pdb.
transferase 27-may-08 2vum
Mg Zn Br
Title: alpha-amanitin inhibited complete rna polymerase ii elongation complex
Author: f. brueckner, p. cramer
Keywords: phosphoprotein, intermediate, fungal toxin, polymorphism, nucleotidyltransferase, transcription mechanism
- 2w0s.pdb.
transferase 08-oct-08 2w0s
Mg Br
Title: crystal structure of vaccinia virus thymidylate kinase bound to brivudin-5'-monophosphate
Author: c. caillat, d. topalis, l. a. agrofoglio, s. pochet, j. balzarini, d. deville-bonne, p. meyer
Keywords: atp-binding, nucleotide-binding, kinase, poxvirus, tmp kinase, transferase
- 2w12.pdb.
hydrolase/inhibitor 14-oct-08 2w12
Zn
Title: high-resolution crystal structure of the p-i snake venom metalloproteinase bap1 in complex with a peptidomimetic: insights into inhibitor binding
Author: t. j. lingott, c. schleberger, j. m. gutierrez, i. merfort
Keywords: endopeptidase, alpha-beta protein, matrixmetalloproteinase, tumor necrosis factor alpha converting enzyme, pyrrolidone carboxylic acid
- 2w13.pdb.
hydrolase/inhibitor 14-oct-08 2w13
Zn
Title: high-resolution crystal structure of the p-i snake venom metalloproteinase bap1 in complex with a peptidomimetic: insights into inhibitor binding
Author: t. j. lingott, c. schleberger, j. m. gutierrez, i. merfort
Keywords: p-i snake venom metalloproteinase, alpha-beta proteins, matrixmetalloproteinase, tumor necrosis factor alpha converting enzyme, pyrrolidone carboxylic acid
- 2w14.pdb.
hydrolase/inhibitor 14-oct-08 2w14
Zn
Title: high-resolution crystal structure of the p-i snake venom metalloproteinase bap1 in complex with a peptidomimetic: insights into inhibitor binding
Author: t. j. lingott, c. schleberger, j. m. gutierrez, i. merfort
Keywords: endopeptidase, alpha-beta protein, matrixmetalloproteinase, tumor necrosis factor alpha converting enzyme, pyrrolidone carboxylic acid
- 2w15.pdb.
hydrolase/inhibitor 14-oct-08 2w15
Zn
Title: high-resolution crystal structure of the p-i snake venom metalloproteinase bap1 in complex with a peptidomimetic: insights into inhibitor binding
Author: t. j. lingott, c. schleberger, j. m. gutierrez, i. merfort
Keywords: endopeptidase, alpha-beta protein, matrixmetalloproteinase, tumor necrosis factor alpha converting enzyme, pyrrolidone carboxylic acid
- 2w1p.pdb.
membrane protein 20-oct-08 2w1p
Cl
Title: 1.4 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a closed conformation at ph 8.0
Author: g. fischer, u. kosinska-eriksson, c. aponte-santamaria, m. palmgren, c. geijer, k. hedfalk, s. hohmann, b. l. de groot, r. neutze, k. lindkvist-petersson
Keywords: membrane protein, gating, yeast
- 2w2e.pdb.
membrane protein 29-oct-08 2w2e
Cl
Title: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a closed conformation at ph 3.5
Author: g. fischer, u. kosinska-eriksson, c. aponte-santamaria, m. palmgren, c. geijer, k. hedfalk, s. hohmann, b. l. de groot, r. neutze, k. lindkvist-petersson
Keywords: gating, aquaporin, membrane protein
- 2w57.pdb.
metal transport 05-dec-08 2w57
Zn
Title: crystal structure of the vibrio cholerae ferric uptake regulator (fur) reveals structural rearrangement of the dna-binding domains
Author: m. a. sheikh, g. l. taylor
Keywords: vibrio cholerae, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, dna-binding, transcription, metal-binding, ferric uptake
- 2w7o.pdb.
dna-binding protein 23-dec-08 2w7o
Ca
Title: structure and activity of bypass synthesis by human dna polymerase kappa opposite the 7,8-dihydro-8- oxodeoxyguanosine adduct
Author: a. irimia, m. egli
Keywords: translesion dna polymerase, human dna polymerase kappa, dgtp, dna repair, dna damage, dna-binding protein
- 2w7p.pdb.
dna-binding protein 23-dec-08 2w7p
Ca
Title: structure and activity of bypass synthesis by human dna polymerase kappa opposite the 7,8-dihydro-8- oxodeoxyguanosine adduct
Author: a. irimia, m. egli
Keywords: translesion dna polymerase, human dna polymerase kappa, datp, dna repair, dna damage, dna-binding protein
- 2wca.pdb.
hydrolase 10-mar-09 2wca
Ca
Title: btgh84 in complex with n-butyl pugnac
Author: y. he, g. j. davies
Keywords: complex, hydrolase, inhibitor, glycosidase
- 2wdc.pdb.
hydrolase 24-mar-09 2wdc
Mn
Title: termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Author: v. sauve, p. roversi, k. leath, e. f. garman, r. antrobus, s. m. lea, b. c. berks
Keywords: sulfur oxidation pathway, sox, soxb, cys s-thiosulfonate, hydrolase
- 2wdd.pdb.
hydrolase 24-mar-09 2wdd
Mn
Title: termus thermophilus sulfate thiohydrolase soxb in complex with sulfate
Author: v. sauve, p. roversi, k. leath, e. f. garman, r. antrobus, s. m. lea, b. c. berks
Keywords: sulfur oxidation pathway, sox, soxb, cys s-thiosulfonate, hydrolase
- 2wde.pdb.
hydrolase 24-mar-09 2wde
Mn
Title: termus thermophilus sulfate thiohydrolase soxb in complex with thiosulfate
Author: v. sauve, p. roversi, k. leath, e. f. garman, r. antrobus, s. m. lea, b. c. berks
Keywords: sulfur oxidation pathway, sox, soxb, sulfur-sulfur hydrolysis, cys s-thiosulfonate
- 2wdf.pdb.
hydrolase 24-mar-09 2wdf
Mn
Title: termus thermophilus sulfate thiohydrolase soxb
Author: v. sauve, p. roversi, k. leath, e. f. garman, r. antrobus, s. m. lea, b. c. berks
Keywords: sulfur-sulfur hydrolysis, sulfur oxidation pathway, sox, soxb, cys s-thiosulfonate
- 2wfh.pdb.
splicing 06-apr-09 2wfh
Title: the human slit 2 dimerization domain d4
Author: e. seiradake, a. c. von philipsborn, m. henry, m. fritz, h. lortat-jacob, m. jamin, w. hemrika, m. bastmeyer, s. cusack, a. a. mccarthy
Keywords: heparan, heparin, secreted, guidance, d4, xds, lrr, slit, axon, neuron, phaser, sulfate
- 2wfi.pdb.
isomerase 06-apr-09 2wfi
Mg
Title: atomic resolution crystal structure of the ppiase domain of human cyclophilin g
Author: c. m. stegmann, g. m. sheldrick, m. c. wahl
Keywords: pre-mrna splicing, alternative splicing, nucleus, rotamase, isomerase, cyclosporin, peptidyl-prolyl cis-trans isomerase
- 2wfj.pdb.
isomerase/immune system 06-apr-09 2wfj
Cl Mg
Title: atomic resolution crystal structure of the ppiase domain of human cyclophilin g in complex with cyclosporin a.
Author: c. m. stegmann, g. m. sheldrick, m. c. wahl
Keywords: cyclophilin, cyclosporin, isomerase, rotamase, peptidyl- prolyl cis-trans isomerase, pre-mrna splicing, immunosuppressant
- 2wfo.pdb.
viral protein 09-apr-09 2wfo
Title: crystal structure of machupo virus envelope glycoprotein gp1
Author: t. a. bowden, m. crispin, s. c. graham, d. j. harvey, j. m. grimes, e. y. jones, d. i. stuart
Keywords: arenavirus, new world arenavirus, hemorrhagic fever virus, envelope protein, machupo, junin, guanarito, sabia, chapare, virion, macv, gp1, viral attachment, transferrin receptor, viral protein
- 2wgz.pdb.
transferase 28-apr-09 2wgz
Mn
Title: crystal structure of alpha-1,3 galactosyltransferase ( alpha3gt) in a complex with p-nitrophenyl-beta-galactoside (pnp-beta-gal)
Author: h. jamaluddin, p. tumbale, t. a. ferns, n. thiyagarajan, k. brew, k. r. acharya
Keywords: glycoprotein, metal-binding, signal-anchor, alpha-1, membrane, manganese, transferase, substrate binding, glycosyltransferase, transmembrane, golgi apparatus, enzyme kinetics
- 2wha.pdb.
transferase 02-may-09 2wha
F
Title: truncation and optimisation of peptide inhibitors of cdk2, cyclin a through structure guided design
Author: g. kontopidis, m. j. andrews, c. mcinnes, a. plater, l. innes, s. renachowski, a. cowan, p. m. fischer
Keywords: beta-peptide, cyclin groove
- 2zj9.pdb.
hydrolase 29-feb-08 2zj9
Na
Title: x-ray crystal structure of ampc beta-lactamase (ampc(d)) from an escherichia coli with a tripeptide deletion (gly286 ser287 asp288) on the h10 helix
Author: y. yamaguchi, g. sato, y. yamagata, j. wachino, y. arakawa, h. kurosaki
Keywords: tripeptide deletion, hydrolase
- 2zm5.pdb.
transferase/rna 11-apr-08 2zm5
Mg Se
Title: crystal structure of trna modification enzyme miaa in the complex with trna(phe)
Author: j. sakai, m. yao, s. chimnaronk, i. tanaka
Keywords: trna modification enzyme, nucleotide- binding, nucleotidyltransferase, transferase, trna processing, transferase/rna complex
- 2zm7.pdb.
hydrolase 14-apr-08 2zm7
Title: structure of 6-aminohexanoate-dimer hydrolase, s112a/g181d mutant complexed with 6-aminohexanoate-dimer
Author: t. ohki, n. shibata, y. higuchi, y. kawashima, m. takeo, d. kato, s. negoro
Keywords: hydrolase, nylon degradation, plasmid
- 2zma.pdb.
hydrolase 14-apr-08 2zma
Title: crystal structure of 6-aminohexanoate-dimer hydrolase s112a/g181d/h266n/d370y mutant with substrate
Author: t. ohki, n. shibata, y. higuchi, m. takeo, s. negoro
Keywords: nylon degradation, plasmid
- 2zmv.pdb.
transport protein 21-apr-08 2zmv
Title: crystal structure of synbindin
Author: f. fan
Keywords: synbindin, endoplasmic reticulum, er-golgi transport, golgi apparatus, transport, transport protein
- 2zxq.pdb.
hydrolase 05-jan-09 2zxq
Mn
Title: crystal structure of endo-alpha-n-acetylgalactosaminidase from bifidobacterium longum (engbf)
Author: r. suzuki, t. katayama, h. ashida, k. yamamoto, m. kitaoka, s. fushinobu
Keywords: glycosidase, hydrolase
- 2zxu.pdb.
transferase/rna 07-jan-09 2zxu
Mg
Title: crystal structure of trna modification enzyme miaa in the complex with trna(phe) and dmaspp
Author: j. sakai, m. yao, s. chimnaronk, i. tanaka
Keywords: atp-binding, trna modification enzyme, nucleotide-binding, nucleotidyltransferase, transferase, trna processing, transferase/rna complex
- 2zyh.pdb.
hydrolase 22-jan-09 2zyh
Ca
Title: mutant a. fulgidus lipase s136a complexed with fatty acid fragment
Author: c. k. chen, t. p. ko, r. t. guo, a. h. wang
Keywords: archaeoglobus fulgidus, fatty acid, hydrolase
- 2zyi.pdb.
hydrolase 22-jan-09 2zyi
Ca
Title: a. fulgidus lipase with fatty acid fragment and calcium
Author: c. k. chen, t. p. ko, r. t. guo, a. h. wang
Keywords: archaeoglobus fulgidus, fatty acid, hydrolase
- 2zyr.pdb.
hydrolase 28-jan-09 2zyr
Mg
Title: a. fulgidus lipase with fatty acid fragment and magnesium
Author: c. k. chen, t. p. ko, r. t. guo, a. h. wang
Keywords: archaeoglobus fulgidus, fatty acid, hydrolase
- 2zys.pdb.
hydrolase 29-jan-09 2zys
Cl
Title: a. fulgidus lipase with fatty acid fragment and chloride
Author: c. k. chen, t. p. ko, r. t. guo, a. h. wang
Keywords: archaeoglobus fulgidus, fatty acid, hydrolase
- 3b2q.pdb.
hydrolase 19-oct-07 3b2q
F
Title: intermediate position of atp on its trail to the binding pocket inside the subunit b mutant r416w of the energy converter a1ao atp synthase
Author: a. kumar, m. s. s. manimekalai, a. m. balakrishna, c. hunke, g. gruber
Keywords: atp synthesis, hydrogen ion transport, ion transport, transport
- 3brx.pdb.
membrane protein 21-dec-07 3brx
Ca
Title: crystal structure of calcium-bound cotton annexin gh1
Author: n. -j. hu, a. hofmann
Keywords: membrane binding, annexin, membrane protein
- 3byb.pdb.
hydrolase inhibitor 15-jan-08 3byb
Title: crystal structure of textilinin-1, a kunitz-type serine protease inhibitor from the australian common brown snake venom
Author: e. k. millers, l. w. guddat
Keywords: beta hairpin, kunitz-type protease inhibitor, trypsin, plasmin, hydrolase inhibitor
- 3c49.pdb.
transferase 29-jan-08 3c49
F
Title: human poly(adp-ribose) polymerase 3, catalytic fragment in complex with an inhibitor ku0058948
Author: l. lehtio, t. karlberg, c. h. arrowsmith, h. berglund, c. bountra, r. busam, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, t. helleday, m. d. herman, a. johansson, i. johansson, a. kallas, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, l. svensson, a. g. thorsell, l. tresaugues, s. van den berg, m. welin, j. weigelt, structural genomics consortium (sgc)
Keywords: catalytic fragment, structural genomics, structural genomics consortium, sgc, alternative splicing, glycosyltransferase, nad, nucleus, transferase
- 3c4h.pdb.
transferase 30-jan-08 3c4h
Title: human poly(adp-ribose) polymerase 3, catalytic fragment in complex with an inhibitor dr2313
Author: l. lehtio, r. collins, c. h. arrowsmith, h. berglund, c. bountra, r. busam, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, m. d. herman, a. johansson, i. johansson, a. kallas, t. karlberg, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, l. svensson, a. g. thorsell, l. tresaugues, s. van den berg, m. welin, j. weigelt, structural genomics consortium (sgc)
Keywords: catalytic fragment, structural genomics, structural genomics consortium, sgc, alternative splicing, glycosyltransferase, nad, nucleus, transferase
- 3ce0.pdb.
transferase 27-feb-08 3ce0
Title: human poly(adp-ribose) polymerase 3, catalytic fragment in complex with an inhibitor pj34
Author: l. lehtio, t. karlberg, c. h. arrowsmith, h berglund, c. bountra, r. busam, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, m. d. herman, a. johansson, i. johansson, a. kallas, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, l. svensson, a. g. thorsell, l. tresaugues, s. van den berg, m. welin, j. weigelt, structural genomics consortium (sgc)
Keywords: catalytic fragment, structural genomics, structural genomics consortium, sgc, alternative splicing, glycosyltransferase, nad, nucleus, transferase
- 3cso.pdb.
transferase 10-apr-08 3cso
Cl
Title: hcv polymerase in complex with a 1,5 benzodiazepine inhibitor
Author: o. nyanguile
Keywords: 5-benzodiazepines, hepatitis c virus, ns5b, polymerase, acetylation, transferase
- 3cvv.pdb.
lyase/dna 20-apr-08 3cvv
Title: drosophila melanogaster (6-4) photolyase bound to ds dna with a t-t (6-4) photolesion and f0 cofactor
Author: a. f. glas, m. j. maul, m. j. cryle, t. r. m. barends, s. schneider, e. kaya, i. schlichting, t. carell
Keywords: lyase/dna complex
- 3cyz.pdb.
pheromone binding protein 27-apr-08 3cyz
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with 9-keto-2(e)-decenoic acid at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz0.pdb.
pheromone binding protein 27-apr-08 3cz0
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with the n-butyl benzene sulfonamide at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz1.pdb.
pheromone binding protein 27-apr-08 3cz1
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with the n-butyl benzene sulfonamide at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz2.pdb.
pheromone binding protein 27-apr-08 3cz2
Cl
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, signal transduction, queen mandibular protein, pheromone binding protein
- 3d2y.pdb.
hydrolase 09-may-08 3d2y
Title: complex of the n-acetylmuramyl-l-alanine amidase amid from e.coli with the substrate anhydro-n-acetylmuramic acid-l- ala-d-gamma-glu-l-lys
Author: f. kerff, s. petrella, r. herman, e. sauvage, f. mercier, a. luxen, j. m. frere, b. joris, p. charlier
Keywords: pgrp, peptidoglycan recognizing protein, ampd, n-acetylmuramyl-l-alanine amidase, cell wall biogenesis/degradation, hydrolase, lipoprotein, membrane, metal-binding, outer membrane, palmitate, zinc
- 3d2z.pdb.
hydrolase 09-may-08 3d2z
Cl Zn
Title: complex of the n-acetylmuramyl-l-alanine amidase amid from e.coli with the product l-ala-d-gamma-glu-l-lys
Author: f. kerff, s. petrella, r. herman, e. sauvage, f. mercier, a. luxen, j. m. frere, b. joris, p. charlier
Keywords: pgrp,peptidoglycan recognizing protein, ampd, n-acetylmuramyl-l-alanine amidase, cell wall biogenesis/degradation, hydrolase, lipoprotein, membrane, metal-binding, outer membrane, palmitate, zinc
- 3d39.pdb.
immune system 09-may-08 3d39
F
Title: the complex between tcr a6 and human class i mhc hla-a2 with the modified htlv-1 tax (y5(4-fluorophenylalanine)) peptide
Author: o. y. borbulevych, j. r. clemens, b. m. baker
Keywords: ubl conjugation, disease mutation, glycation, immunoglobulin domain, pyrrolidone carboxylic acid, secreted, immune system
- 3d3v.pdb.
immune system 12-may-08 3d3v
F
Title: the complex between tcr a6 and human class i mhc hla-a2 with the modified htlv-1 tax (y5(3,4-difluorophenylalanine)) peptide
Author: o. y. borbulevych, j. r. clemens, b. m. baker
Keywords: transmembrane, ubl conjugation, immunoglobulin domain, secreted, disease mutation, glycation, pyrrolidone carboxylic acid, immune system
- 3d65.pdb.
hydrolase inhibitor/hydrolase 19-may-08 3d65
Ca
Title: crystal structure of textilinin-1, a kunitz-type serine protease inhibitor from the australian common brown snake venom, in complex with trypsin
Author: e. -k. i. millers, p. p. masci, m. f. lavin, j. de jersey, l. w. guddat
Keywords: trypsin, blood, coagulation, calcium, digestion, hydrolase, metal-binding, protease, secreted, serine protease, zymogen, hydrolase inhibitor/hydrolase complex
- 3d6c.pdb.
hydrolase 19-may-08 3d6c
Ca
Title: crystal structure of staphylococcal nuclease variant phs l38e at cryogenic temperature
Author: m. j. harms, j. l. schlessman, g. r. sue, garcia-moreno e. b.
Keywords: hyperstable variant, hydrolase, calcium, endonuclease, metal-binding, secreted, zymogen
- 3d6g.pdb.
immune system 19-may-08 3d6g
Title: fc fragment of igg1 (herceptin) with protein-a mimetic peptide dendrimer ligand.
Author: a. d. bujacz, i. redzynia, g. d. bujacz, f. dinon, p. pengo, g. fassina
Keywords: igg1, glycosilated protein, protein a mimetic peptide dendrimer ligand, chromosomal rearrangement, glycoprotein, immunoglobulin c region, immunoglobulin domain, secreted, immune system
- 3d73.pdb.
pheromone binding protein 20-may-08 3d73
Title: crystal structure of a pheromone binding protein mutant d35a, from apis mellifera, at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3d74.pdb.
pheromone binding protein 20-may-08 3d74
Title: crystal structure of a pheromone binding protein mutant d35a, from apis mellifera, soaked at ph 5.5
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3d75.pdb.
pheromone binding protein 20-may-08 3d75
Title: crystal structure of a pheromone binding protein mutant d35n, from apis mellifera, at ph 5.5
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3d76.pdb.
pheromone binding protein 20-may-08 3d76
Na
Title: crystal structure of a pheromone binding protein mutant d35n, from apis mellifera, soaked at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3d77.pdb.
pheromone binding protein 20-may-08 3d77
Na
Title: crystal structure of a pheromone binding protein mutant d35n, from apis mellifera, soaked at ph 4.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3d78.pdb.
pheromone binding protein 20-may-08 3d78
Title: dimeric crystal structure of a pheromone binding protein mutant d35n, from apis mellifera, at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: honey bee, apis mellifera, signal transduction, queen mandibular protein, ph
- 3da8.pdb.
transferase 28-may-08 3da8
Mg I
Title: crystal structure of purn from mycobacterium tuberculosis
Author: z. zhang, c. j. squire, e. n. baker
Keywords: purn, structure, transferase
- 3dcj.pdb.
transferase 03-jun-08 3dcj
Cl Mg
Title: crystal structure of glycinamide formyltransferase (purn) from mycobacterium tuberculosis in complex with 5-methyl-5, 6,7,8-tetrahydrofolic acid derivative
Author: z. zhang, c. j. squire, e. n. baker
Keywords: purn
- 3ddi.pdb.
transferase 05-jun-08 3ddi
Mg
Title: crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with tdp
Author: s. jeudy, a. lartigue, j. m. claverie, a. abergel
Keywords: atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
- 3del.pdb.
protein binding, transport protein 10-jun-08 3del
Title: the structure of ct381, the arginine binding protein from the periplasm chlamydia trachomatis
Author: p. petit, l. vuillard, s. spinelli
Keywords: periplasmic protein, arginine binding, protein binding, transport protein
- 3dez.pdb.
transferase 11-jun-08 3dez
Title: crystal structure of orotate phosphoribosyltransferase from streptococcus mutans
Author: c. p. liu, z. q. gao, h. f. hou, l. f. li, x. d. su, y. h. dong
Keywords: glycosyltransferase, magnesium, pyrimidine biosynthesis, transferase
- 3df6.pdb.
viral protein, unknown function 11-jun-08 3df6
Ca Se
Title: orf99 from the archaeal virus afv1 is a natural mimic of the ab-initio designed protein top7
Author: a. goulet, s. spinelli, d. prangishvili, h. van tilbeurgh, c. cambillau, v. campanacci
Keywords: extremophiles, protein fold, lipothrixviridae, viral protein, unknown function
- 3dfb.pdb.
metal binding protein 11-jun-08 3dfb
Ni
Title: three dimensional structure of the small metal binding protein, smbp
Author: j. p. allen, w. francisco
Keywords: copper, metal-binding, periplasm, metal binding protein
- 3dgh.pdb.
oxidoreductase 13-jun-08 3dgh
Title: crystal structure of drosophila thioredoxin reductase, c- terminal 8-residue truncation
Author: b. e. eckenroth, r. j. hondal, s. j. everse
Keywords: rossmann, flavoprotein, alternative initiation, alternative splicing, cytoplasm, fad, mitochondrion, nadp, redox-active center, transit peptide
- 3dgi.pdb.
oxidoreductase 13-jun-08 3dgi
Fe
Title: crystal structure of f87a/t268a mutant of cyp bm3
Author: i. le trong, j. h. katayama, r. a. totah, r. e. stenkamp, e. p. fox
Keywords: bm3, dmso, cytoplasm, electron transport, fad, flavoprotein, fmn, heme, iron, metal-binding, monooxygenase, multifunctional enzyme, nadp, oxidoreductase, transport
- 3dgy.pdb.
hydrolase 16-jun-08 3dgy
Title: crystal structure of ribonuclease sa2 with guanosine-2'- cyclophosphate
Author: j. sevcik, v. hlinkova
Keywords: hydrolase, protein-mononucleotide complex, guanosine-2'-monophosphate, mononucleotide
- 3dgz.pdb.
oxidoreductase 16-jun-08 3dgz
Title: crystal structure of mouse mitochondrial thioredoxin reductase, c-terminal 3-residue truncation
Author: b. e. eckenroth, r. j. hondal, s. j. everse
Keywords: rossmann, flavoprotein, alternative splicing, fad, mitochondrion, nadp, redox-active center, selenium, selenocysteine, transit peptide
- 3dh2.pdb.
hydrolase 16-jun-08 3dh2
Title: crystal structure of ribonuclease sa2 with guanosine-3'- cyclophosphate prepared by cocrystallization
Author: j. sevcik, v. hlinkova
Keywords: hydrolase, protein-mononucleotide complex, guanosine-3'-monophosphate, mononucleotide, cocrystallization
- 3dh9.pdb.
oxidoreductase 17-jun-08 3dh9
Title: crystal structure of drosophila thioredoxin reductase, wild- type
Author: b. e. eckenroth, r. j. hondal, sj. everse
Keywords: rossmann, flavoprotein, alternative initiation, alternative splicing, cytoplasm, fad, mitochondrion, nadp, redox-active center, transit peptide
- 3djw.pdb.
viral protein, unknown function 24-jun-08 3djw
Title: orf99 from the archaeal virus afv1 is a natural mimic of the ab-initio designed protein top7
Author: a. goulet, s. spinelli, d. prangishvili, h. van tilbeurgh, c. cambillau, v. campanacci
Keywords: extremophiles, protein fold, lipothrixviridae, viral protein, unknown function
- 3dpc.pdb.
hydrolase 07-jul-08 3dpc
Title: structure of e.coli alkaline phosphatase mutant in complex with a phosphorylated peptide
Author: w. h. wang, t. jiang
Keywords: complex structure, protein kinase, hydrolase, magnesium, metal-binding, periplasm, phosphoprotein, zinc
- 3dr1.pdb.
gene regulation/transferase 10-jul-08 3dr1
Mg F
Title: side-chain fluorine atoms of non-steroidal vitamin d3 analogs stabilize helix 12 of vitamin d receptor
Author: y. sato, n. rochel, d. moras
Keywords: polymorphism, proto-oncogene, transferase, ubl conjugation, gene regulation/transferase complex
- 3dsr.pdb.
hydrolase 14-jul-08 3dsr
Title: adp in transition binding site in the subunit b of the energy converter a1ao atp synthase
Author: a. kumar, s. m. s. manimekalai, a. m. balakrishna, g. gruber
Keywords: atp synthesis, hydrogen ion transport, ion transport, transport
- 3dxg.pdb.
hydrolase 24-jul-08 3dxg
Title: ribonuclease a- uridine 5' phosphate complex
Author: v. g. tsirkone, k. dossi, d. d. leonidas, s. e. zographos, n. g. oikonomakos, m. kontou
Keywords: ribonuclease, endonuclease, nucleotide inhibitor, glycation, glycoprotein, nuclease, secreted
- 3dxh.pdb.
hydrolase 24-jul-08 3dxh
Title: ribonuclease a uridine 5' diphosphate complex
Author: v. g. tsirkone, k. dossi, d. d. leonidas, s. e. zographos, n. g. oikonomakos, m. kontou
Keywords: ribonuclease, endonuclease, nucleotide inhibitor, glycation, glycoprotein, nuclease, secreted
- 3dxx.pdb.
transferase 25-jul-08 3dxx
Title: crystal structure of ectrmb
Author: h. h. zhou, q. liu, y. x. gao, m. k. teng, l. w. niu
Keywords: trna modification, methyltransferase, s-adenosyl-l-methionine, transferase, trna processing
- 3dxy.pdb.
transferase 25-jul-08 3dxy
Title: crystal structure of ectrmb in complex with sam
Author: h. h. zhou, q. liu, y. x. gao, m. k. teng, l. w. niu
Keywords: trna modification, methyltransferase, s-adenosyl-l-methionine, transferase, trna processing
- 3dxz.pdb.
transferase 25-jul-08 3dxz
Title: crystal structure of ectrmb in complex with sah
Author: h. h. zhou, q. liu, y. x. gao, m. k. teng, l. w. niu
Keywords: trna modification, methyltransferase, s-adenosyl-l-methionine, transferase, trna processing
- 3dy7.pdb.
transferase 25-jul-08 3dy7
Mg F I
Title: x-ray structure of the human mitogen-activated protein kinase kinase 1 (mek1) in a complex with ligand and mgatp
Author: j. f. ohren, a. pavlovsky, e. zhang
Keywords: serine/threonine- protein kinase, transferase, tyrosine-protein kinase
- 3e0m.pdb.
oxidoreductase 31-jul-08 3e0m
Title: crystal structure of fusion protein of msra and msrb
Author: y. k. kim, k. y. hwang
Keywords: msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase
- 3e0n.pdb.
hydrolase 31-jul-08 3e0n
Title: the x-ray structure of human prostasin in complex with dffr- chloromethyl ketone inhibitor
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: protease, chloromethyl-ketone, channel, enac, cell membrane, glycoprotein, hydrolase, membrane, secreted, serine protease, transmembrane, zymogen
- 3e0o.pdb.
oxidoreductase 31-jul-08 3e0o
Title: crystal structure of msrb
Author: a. k. park, y. j. shin, y. k. kim, y. m. chi, k. y. hwang
Keywords: oxidoreductase
- 3e2d.pdb.
hydrolase 05-aug-08 3e2d
Mg Zn
Title: the 1.4 a crystal structure of the large and cold-active vibrio sp. alkaline phosphatase
Author: r. helland, r. l. larsen, b. asgeirsson
Keywords: metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase
- 3ee3.pdb.
transferase 04-sep-08 3ee3
Mg
Title: crystal structure of acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with cdp
Author: s. jeudy, a. lartigue, j. m. claverie, c. abergel
Keywords: atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
- 3eic.pdb.
transferase 15-sep-08 3eic
Mg
Title: x-ray structure of acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with udp
Author: s. jeudy, a. lartigue, j. m. claverie, c. abergel
Keywords: atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
- 3elh.pdb.
transferase 22-sep-08 3elh
Mg
Title: x-ray structure of acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with dudp
Author: s. jeudy, a. lartigue, j. m. claverie, c. abergel
Keywords: atp-binding, kinase, magnesium, metal- binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
- 3enh.pdb.
hydrolase/unknown function 25-sep-08 3enh
Ta Br
Title: crystal structure of cgi121/bud32/kae1 complex
Author: d. neculai
Keywords: metal-binding, metalloprotease, protease, zinc, dimerization domain, keops, telomere, transcription, hydrolase/unknown function complex
- 3er8.pdb.
transcription, transferase/dna, rna 01-oct-08 3er8
Title: crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase complex with two fragments of rna
Author: c. li, h li, s. zhou, t. l. poulos, p. d. gershon
Keywords: s- adenosyl-l-methionine, transcription, transferase, transferase/dna, rna complex
- 3er9.pdb.
transcription, transferase/rna 01-oct-08 3er9
Ca
Title: crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase complex with uu and 3'-deoxy atp
Author: c. li, h li, s. zhou, t. l. poulos, p. d. gershon
Keywords: s- adenosyl-l-methionine, transcription, transferase, transferase/rna complex
- 3erc.pdb.
transcription, transferase/dna, rna 01-oct-08 3erc
Ca
Title: crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase with three fragments of rna and 3'-deoxy atp
Author: c. li, h li, s. zhou, t. l. poulos, p. d. gershon
Keywords: s- adenosyl-l-methionine, transcription, transferase, transferase/dna, rna complex
- 3eu3.pdb.
oxidoreductase 09-oct-08 3eu3
Ca
Title: crystal structure of bdbd from bacillus subtilis (reduced)
Author: a. crow, m. c. moller, l. hederstedt, n. e. le brun
Keywords: dsba-like, thioredoxin-like, dithiol form, competence, oxidoreductase, redox-active center
- 3eu4.pdb.
oxidoreductase 09-oct-08 3eu4
Ca
Title: crystal structure of bdbd from bacillus subtilis (oxidised)
Author: a. crow, m. c. moller, l. hederstedt, n. le brun
Keywords: oxidised, disulfide bridge, partially broken disulfide, competence, oxidoreductase, redox-active center
- 3ewg.pdb.
transcription 15-oct-08 3ewg
Title: crystal structure of the n-terminal domain of nusg (ngn) from methanocaldococcus jannaschii
Author: h. h. zhou, q. liu, y. x. gao, m. k. teng, l. w. niu
Keywords: antiparallel beta sheet, flanked alpha helices, transcription
- 3f56.pdb.
structural protein 03-nov-08 3f56
Se
Title: the structure of a previously undetected carboxysome shell protein: csos1d from prochlorococcus marinus med4
Author: m. g. klein, p. zwart, c. a. kerfeld
Keywords: hexamer, structural protein
- 3f8n.pdb.
dna binding protein 13-nov-08 3f8n
Mn Zn
Title: crystal structure of perr-zn-mn
Author: d. a. k. traore, j. -l. ferrer, l. jacquamet, v. duarte, j. -m. latour
Keywords: helix-turn-helix, cytoplasm, dna- binding, manganese, oxidation, repressor, transcription, transcription regulation, zinc
- 3fbe.pdb.
transferase 19-nov-08 3fbe
Mg
Title: crystal structure of the mimivirus ndk n62l-r107g double mutant complexed with gdp
Author: s. jeudy, a. lartigue, j. m. claverie, c. abergel
Keywords: atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
- 3fch.pdb.
structural protein 21-nov-08 3fch
Title: the structure of a previously undetected carboxysome shell protein: csos1d from prochlorococcus marinus med4
Author: p. h. zwart, m. g. klein, c. a. kerfeld
Keywords: structural protein
- 3fem.pdb.
biosynthetic protein, transferase 30-nov-08 3fem
Title: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from saccharomyces cerevisiae
Author: m. strohmeier, v. windeisen, i. sinning, i. tews
Keywords: synthase, pyridoxine biosynthesis, biosynthetic protein, transferase
- 3fhb.pdb.
transferase 09-dec-08 3fhb
Title: human poly(adp-ribose) polymerase 3, catalytic fragment in complex with an inhibitor 3-aminobenzoic acid
Author: l. lehtio, t. karlberg, c. h. arrowsmith, h. berglund, r. busam, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, i. johansson, t. kotenyova, m. moche, p. nordlund, t. nyman, d. ogg, c. persson, j. sagemark, h. schueler, p. stenmark, m. sundstrom, a. g. thorsell, s. van den berg, j. weigelt, l. holmberg-schiavone, structural genomics consortium (sgc)
Keywords: enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, sgc, alternative splicing, glycosyltransferase, nad, nucleus
- 3fjo.pdb.
oxidoreductase 15-dec-08 3fjo
Title: structure of chimeric yh cpr
Author: s. morera, l. aigrain, g. truan
Keywords: oxidoreductase, endoplasmic reticulum, flavoprotein, membrane, nadp, phosphoprotein, transmembrane, ubl conjugation, acetylation, congenital adrenal hyperplasia, disease mutation, polymorphism
- 3frj.pdb.
oxidoreductase 08-jan-09 3frj
F
Title: crystal structure of 11b-hydroxysteroid dehydrogenase-1 (11b-hsd1) in complex with piperidyl benzamide inhibitor
Author: z. wang, a. sudom, n. p. walker
Keywords: endoplasmic reticulum, glycoprotein, lipid metabolism, membrane, nadp, polymorphism, signal-anchor, steroid metabolism, transmembrane
- 3frl.pdb.
membrane protein 08-jan-09 3frl
Cl Se
Title: the 2.25 a crystal structure of lipl32, the major surface antigen of leptospira interrogans serovar copenhageni
Author: c. s. farah, c. r. guzzo, p. hauk, p. l. ho
Keywords: membrane protein
- 3ftj.pdb.
hydrolase 13-jan-09 3ftj
Title: crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans
Author: y. xu, n. c. ha
Keywords: transmembrane, transport
- 3fuo.pdb.
hydrolase 14-jan-09 3fuo
Title: the crystal structure of receptor binding domain of botulinum neurotoxin serotype a
Author: z. fu, c. chen, j. t. barbieri, j. -j. p. kim, m. r. baldwin
Keywords: ganglioside binding, hydrolase, membrane, metal-binding, metalloprotease, neurotoxin, pharmaceutical, protease, secreted, toxin, transmembrane, zinc
- 3fuq.pdb.
toxin 14-jan-09 3fuq
Title: glycosylated sv2 and gangliosides as dual receptors for botulinum neurotoxin serotype f
Author: z. fu, c. chen, j. t. barbieri, j. -j. p. kim, m. r. baldwin
Keywords: ganglioside, sv2, receptor binding, neurotoxin
- 3fye.pdb.
oxidoreductase 22-jan-09 3fye
Mg Cu Fe Ca Cd
Title: catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides in the reduced state
Author: l. qin, d. a. mills, d. a. proshlyakov, c. hiser, s. ferguson-miller
Keywords: cell membrane, copper, electron transport, heme, hydrogen ion transport, ion transport, iron, membrane, metal-binding, respiratory chain, transmembrane, transport, oxidoreductase
- 3fyi.pdb.
oxidoreductase 22-jan-09 3fyi
Mg Cu Fe Ca Cd
Title: catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides in the reduced state bound with cyanide
Author: l. qin, d. a. mills, d. a. proshlyakov, c. hiser, s. ferguson-miller
Keywords: cyanide binding, cell membrane, copper, electron transport, heme, hydrogen ion transport, ion transport, iron, membrane, metal-binding, oxidoreductase, respiratory chain, transmembrane, transport
- 3g4d.pdb.
lyase 03-feb-09 3g4d
Title: crystal structure of (+)-delta-cadinene synthase from gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis
Author: h. a. gennadios, l. di costanzo, d. j. miller, r. k. allemann, d. w. christianson
Keywords: lyase, magnesium, metal-binding
- 3g7d.pdb.
biosynthetic protein 09-feb-09 3g7d
Se Cd
Title: native phpd with cadmium atoms
Author: s. k. nair
Keywords: cupin, biosynthetic protein
- 3g7y.pdb.
transferase 11-feb-09 3g7y
Title: crystal structure of oxidized ost6l
Author: c. u. stirnimann, j. p. a. grimshaw, b. l. schulz, m. s. brozzo, f. fritsch, r. glockshuber, g. capitani, m. g. gruetter, m. aebi
Keywords: active site loop, redox state, membrane, transferase, transmembrane
- 3g9b.pdb.
transferase 13-feb-09 3g9b
Title: crystal structure of reduced ost6l
Author: c. u. stirnimann, j. p. a. grimshaw, b. l. schulz, m. s. brozzo, f. fritsch, r. glockshuber, g. capitani, m. g. gruetter, m. aebi
Keywords: active site loop, redox state, membrane, transferase, transmembrane
- 3g9k.pdb.
hydrolase 13-feb-09 3g9k
Se
Title: crystal structure of bacillus anthracis transpeptidase enzyme capd
Author: r. zhang, r. wu, s. richter, v. j. anderson, d. missiakas, a. joachimiak, the great lakes regional center of excellence (glrce)
Keywords: bacillus anthracis, crystal structure, the great lakes regional center of excellence, glrce, capsule biogenesis/degradation, plasmid, virulence, hydrolase
- 3ga4.pdb.
transferase 16-feb-09 3ga4
Title: crystal structure of ost6l (photoreduced form)
Author: c. u. stirnimann, j. p. a. grimshaw, b. l. schulz, m. s. brozzo, f. fritsch, r. glockshuber, g. capitani, m. g. gruetter, m. aebi
Keywords: active site loop, redox state, membrane, transferase, transmembrane
- 3ga9.pdb.
hydrolase 16-feb-09 3ga9
Se
Title: crystal structure of bacillus anthracis transpeptidase enzyme capd, crystal form ii
Author: r. zhang, r. wu, s. richter, v. j. anderson, d. missiakas, a. joachimiak, the great lakes regional center of excellence (glrce)
Keywords: bacillus anthracis, crystal structure, the great lakes regional center of excellence, glrce, capsule biogenesis/degradation, plasmid, virulence, hydrolase
- 3gau.pdb.
immune system 18-feb-09 3gau
(solution scattering)
Title: solution structure of human complement factor h in 50 mm nacl buffer
Author: a. i. okemefuna, r. nan, j. gor, s. j. perkins
Keywords: secreted, sushi, immune system
- 3gav.pdb.
immune system 18-feb-09 3gav
(solution scattering)
Title: solution structure of human complement factor h in 137 mm nacl buffer
Author: a. i. okemefuna, r. nan, j. gor, s. j. perkins
Keywords: secreted, sushi, immune system
- 3gaw.pdb.
immune system 18-feb-09 3gaw
(solution scattering)
Title: solution structure of human complement factor h in 250 mm nacl buffer
Author: a. i. okemefuna, r. nan, j. gor, s. j. perkins
Keywords: secreted, sushi, immune system
- 3gec.pdb.
circadian clock protein 25-feb-09 3gec
Title: crystal structure of a tandem pas domain fragment of drosophila period
Author: o. yildiz, e. wolf
Keywords: circadian clock protein, alternative splicing, biological rhythms, cytoplasm, nucleus, phosphoprotein, polymorphism
- 3ggr.pdb.
cell cycle 02-mar-09 3ggr
Title: crystal structure of the human rad9-hus1-rad1 complex
Author: m. xu, l. bai, h. y. hang, t. jiang
Keywords: dna damage, dna repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm, alternative splicing, cell cycle
- 3gh9.pdb.
oxidoreductase 03-mar-09 3gh9
Title: crystal structure of edta-treated bdbd (oxidised)
Author: a. crow, a. lewin, l. hederstedt, n. e. le-brun
Keywords: dsba, trx-like, oxidoreductase, competence, disulfide bond, redox-active center
- 3gha.pdb.
oxidoreductase 03-mar-09 3gha
Title: crystal structure of etda-treated bdbd (reduced)
Author: a. crow, a. lewin, l. hederstedt, n. e. le-brun
Keywords: dsba-like, trx-like, oxidoreductase, competence, disulfide bond, redox-active center
- 3gk8.pdb.
immune system 10-mar-09 3gk8
Title: x-ray crystal structure of the fab from mab 14, mouse antibody against canine parvovirus
Author: s. hafenstein, v. bowman, t. sun, c. nelson, l. palermo, p. chipman, a. battisti, c. parrish
Keywords: immune system
- 3gkk.pdb.
oxidoreductase 11-mar-09 3gkk
Title: insights into the alkyl peroxide reduction activity of xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate/ligand complex structures
Author: s. -j. liao
Keywords: bcp, prx, atypical 2-cys, crystal structure, oxidoreductase
- 3gkm.pdb.
oxidoreductase 11-mar-09 3gkm
Title: insights into the alkyl peroxide reduction activity of xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate/ligand complex structures
Author: s. -j. liao
Keywords: bcp, prx, atypical 2-cys, crystal structure, oxidoreductase
- 3gkn.pdb.
oxidoreductase 11-mar-09 3gkn
Title: insights into the alkyl peroxide reduction activity of xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate/ligand complex structures
Author: s. -j. liao
Keywords: bcp, prx, atypical 2-cys, crystal structure, oxidoreductase
- 3gl6.pdb.
oxidoreductase 11-mar-09 3gl6
Zn
Title: crystal structure of jarid1a-phd3 complexed with h3(1-9) k4me3 peptide
Author: w. zhanxin, s. jikui, p. dinshaw
Keywords: transcription regulation, zinc, zinc-finger, chromosomal protein, dna- binding, nucleosome core
- 3glr.pdb.
hydrolase/hydrolase regulator 12-mar-09 3glr
Zn
Title: crystal structure of human sirt3 with acetyl-lysine acecs2 peptide
Author: l. jin, w. wei, y. jiang, h. peng, j. cai, c. mao, h. dai, j. e. bemis, m. r. jirousek, j. c. milne, c. h. westphal, r. b. perni
Keywords: sirtuin, substrate peptide complex, hydrolase, metal-binding, mitochondrion, nad, polymorphism, transit peptide, zinc, alternative splicing, ligase, hydrolase/hydrolase regulator complex
- 3gls.pdb.
hydrolase 12-mar-09 3gls
Zn
Title: crystal structure of human sirt3
Author: l. jin, w. wei, y. jiang, h. peng, j. cai, c. mao, h. dai, j. e. bemis, m. r. jirousek, j. c. milne, c. h. westphal, r. b. perni
Keywords: sirtuin, apo structure, hydrolase, metal-binding, mitochondrion, nad, polymorphism, transit peptide, zinc
- 3glt.pdb.
hydrolase/hydrolase regulator 12-mar-09 3glt
Zn
Title: crystal structure of human sirt3 with adpr bound to the acecs2 peptide containing a thioacetyl lysine
Author: l. jin, w. wei, y. jiang, h. peng, j. cai, c. mao, h. dai, j. e. bemis, m. r. jirousek, j. c. milne, c. h. westphal, r. b. perni
Keywords: hydrolase/hydrolase regulator complex
- 3glu.pdb.
hydrolase/hydrolase regulator 12-mar-09 3glu
Zn
Title: crystal structure of human sirt3 with acecs2 peptide
Author: l. jin, w. wei, y. jiang, h. peng, j. cai, c. mao, h. dai, j. e. bemis, m. r. jirousek, j. c. milne, c. h. westphal, r. b. perni
Keywords: sirtuin, product peptide complex, hydrolase, metal-binding, mitochondrion, nad, polymorphism, transit peptide, zinc, alternative splicing, ligase, hydrolase/hydrolase regulator complex
- 3gm1.pdb.
transferase 12-mar-09 3gm1
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2 in complex with paxillin ld4 motif-derived peptides
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: ld4 motif, transferase
- 3gm2.pdb.
transferase 12-mar-09 3gm2
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: transferase
- 3gm3.pdb.
transferase 12-mar-09 3gm3
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: transferase
- 3gmb.pdb.
oxidoreductase 13-mar-09 3gmb
Se
Title: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
Author: k. m. mcculloch, t. mukherjee, t. p. begley, s. e. ealick
Keywords: oxidoreductase
- 3gmc.pdb.
oxidoreductase 13-mar-09 3gmc
Title: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase with substrate bound
Author: k. m. mcculloch, t. mukherjee, t. p. begley, s. e. ealick
Keywords: oxidoreductase
- 3gni.pdb.
signaling protein/signaling protein 17-mar-09 3gni
Title: structure of strad and mo25
Author: e. zeqiraj, s. goldie, d. r. alessi, d. m. f. van aalten
Keywords: polymorphism, transferase, metal binding protein/transferase complex, signaling protein/signaling protein complex
- 3goe.pdb.
recombination, replication 19-mar-09 3goe
Ca
Title: molecular mimicry of sumo promotes dna repair
Author: j. j. p. perry
Keywords: dna repair, sumoylation, sumo, genome stability, dna damage, dna recombination, nucleus, phosphoprotein, recombination, replication
- 3gol.pdb.
transferase 19-mar-09 3gol
Cl Mg
Title: hcv ns5b polymerase in complex with 1,5 benzodiazepine inhibitor (r)-11d
Author: o. nyanguile, h. de bondt
Keywords: 5-benzodiazepine, hcv polymerase, ns5b, medicinal chemistry, 1b-j4, transferase
- 3gp8.pdb.
hydrolase/dna 23-mar-09 3gp8
Title: crystal structure of the binary complex of recd2 with dna
Author: k. saikrishnan, n. cook, d. b. wigley
Keywords: atp-binding, nucleotide-binding, helicase, hydrolase/dna complex
- 3gpl.pdb.
hydrolase/dna 23-mar-09 3gpl
Mg
Title: crystal structure of the ternary complex of recd2 with dna and adpnp
Author: k. saikrishnan, n. cook, d. b. wigley
Keywords: atp-binding, nucleotide-binding, helicase, hydrolase/dna complex
- 3gpm.pdb.
dna binding protein 23-mar-09 3gpm
Title: structure of the trimeric form of the e113g pcna mutant protein
Author: b. d. freudenthal, l. gakhar, s. ramaswamy, m. t. washington
Keywords: dna repair, dna replication, dna-binding, isopeptide bond, nucleus, ubl conjugation, dna binding protein
- 3gpn.pdb.
dna binding protein 23-mar-09 3gpn
Title: structure of the non-trimeric form of the e113g pcna mutant protein
Author: b. d. freudenthal, l. gakhar, s. ramaswamy, m. t. washington
Keywords: dna damage, dna repair, dna replication, dna- binding, isopeptide bond, nucleus, ubl conjugation, dna binding protein
- 3gqf.pdb.
oxidoreductase 24-mar-09 3gqf
Zn Ca
Title: structural and biophysical properties of the pathogenic sod1 variant h46r/h48q
Author: d. d. winkler, j. p. schuermann, p. j. hart
Keywords: oxidoreductase, phosphoprotein, ubl conjugation, zinc
- 3gr9.pdb.
transferase 25-mar-09 3gr9
Title: crystal structure of cold h188k s187n
Author: h. m. holden, p. d. cook, r. l. kubiak, d. p. toomey
Keywords: perosamine, crystallography, structure, plp, aminotransferase, o-antigen, lipopolysaccharide, transferase
- 3gwp.pdb.
lyase 01-apr-09 3gwp
Se
Title: crystal structure of carbon-sulfur lyase involved in aluminum resistance (yp_878183.1) from clostridium novyi nt at 2.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: carbon-sulfur lyase involved in aluminum resistance, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 3gxd.pdb.
hydrolase 02-apr-09 3gxd
Title: crystal structure of apo acid-beta-glucosidase ph 4.5
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxf.pdb.
hydrolase 02-apr-09 3gxf
Title: crystal structure of acid-beta-glucosidase with isofagomine at neutral ph
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxi.pdb.
hydrolase 02-apr-09 3gxi
Title: crystal structure of acid-beta-glucosidase at ph 5.5
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxm.pdb.
hydrolase 02-apr-09 3gxm
Title: crystal structure of acid-beta-glucosidase at ph 4.5, phosphate crystallization condition
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxn.pdb.
hydrolase 02-apr-09 3gxn
Title: crystal structure of apo alpha-galactosidase a at ph 4.5
Author: r. l. lieberman
Keywords: disease mutation, disulfide bond, glycoprotein, glycosidase, lysosome, pharmaceutical, rna editing
- 3gxp.pdb.
hydrolase 02-apr-09 3gxp
Title: crystal structure of acid-alpha-galactosidase a complexed with galactose at ph 4.5
Author: r. l. lieberman
Keywords: disease mutation, disulfide bond, glycoprotein, glycosidase, lysosome, pharmaceutical, rna editing
- 3gxt.pdb.
hydrolase 02-apr-09 3gxt
Title: crystal structure of alpha-galactosidase a at ph 4.5 complexed with 1-deoxygalactonijirimycin
Author: r. l. lieberman
Keywords: disease mutation, disulfide bond, glycoprotein, glycosidase, lysosome, pharmaceutical, rna editing
- 3gyh.pdb.
dna binding protein/dna 03-apr-09 3gyh
Title: crystal structure analysis of s. pombe atl in complex with damaged dna containing pob
Author: j. l. tubbs, a. s. arvai, j. a. tainer, d. s. shin
Keywords: dna repair, dna-binding, dna binding protein/dna complex
- 3gyz.pdb.
chaperone 06-apr-09 3gyz
Na
Title: crystal structure of ipgc from shigella flexneri
Author: m. lunelli, r. k. lokareddy, a. zychlinsky, m. kolbe
Keywords: tetratricopeptide repeat, tpr, chaperone, cytoplasm, plasmid, virulence
- 3gz1.pdb.
chaperone 06-apr-09 3gz1
Title: crystal structure of ipgc in complex with the chaperone binding region of ipab
Author: m. lunelli, r. k. lokareddy, a. zychlinsky, m. kolbe
Keywords: tpr, chaperone, chaperone binding region, cytoplasm, plasmid, virulence, membrane, secreted, transmembrane
- 3h03.pdb.
membrane protein 08-apr-09 3h03
Zn
Title: crystal structure of the binding domain of the ampa subunit glur2 bound to ubp277
Author: a. h. ahmed, r. e. oswald
Keywords: glur2, ampa receptor, neurotransmitter receptor, s1s2, membrane protein
- 3h06.pdb.
membrane protein 08-apr-09 3h06
Title: crystal structure of the binding domain of the ampa subunit glur2 bound to the willardiine antagonist, ubp282
Author: a. h. ahmed, r. e. oswald
Keywords: glur2, ampa receptor, neurotransmitter receptor, s1s2, willardiine, membrane protein
- 3h16.pdb.
signaling protein 11-apr-09 3h16
Title: crystal structure of a bacteria tir domain, pdtir from paracoccus denitrificans
Author: s. l. chan, l. y. low, e. santelli, j. pascual
Keywords: signaling protein
- 3h2y.pdb.
hydrolase 15-apr-09 3h2y
Se
Title: crystal structure of yqeh gtpase from bacillus anthracis with dgdp bound
Author: j. s. brunzelle, s. m. anderson, x. xu, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: possibly involved in replication initiation, csgid, idp90222, center for structural genomics of infectious diseases, hydrolase
- 3h2z.pdb.
oxidoreductase 15-apr-09 3h2z
Na Se
Title: the crystal strucutre of mannitol-1-phosphate dehydrogenase from shigella flexneri
Author: r. wu, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: shigella flexneri, crystal structure, psi-2, protein structure initiative, structural genomics, midwest center for structural genomics (mcsg), acetylation, nad, oxidoreductase
- 3h3v.pdb.
transferase/dna/rna 17-apr-09 3h3v
Mg Zn
Title: yeast rnap ii containing poly(a)-signal sequence in the active site
Author: s. dengl, p. cramer
Keywords: mrna processing
- 3h5a.pdb.
transferase 21-apr-09 3h5a
Zn
Title: crystal structure of e. coli mccb
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotics, n-p bond formation, transferase
- 3h5b.pdb.
hydrolase 21-apr-09 3h5b
Cl Na
Title: crystal structure of wild type hiv-1 protease with novel p1'-ligand grl-02031
Author: y. tie, y. f. wang, i. t. weber
Keywords: wild type protease, protease inhibitor, p1'-ligand, aids, hydrolase
- 3h5n.pdb.
transferase 22-apr-09 3h5n
Mg Zn
Title: crystal structure of e. coli mccb + atp
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotics, n-p bond formation, transferase
- 3h5r.pdb.
transferase 22-apr-09 3h5r
Zn
Title: crystal structure of e. coli mccb + succinimide
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotic, n-p bond formation, antibiotic, antimicrobial, formylation, phosphoprotein, plasmid, transferase
- 3h6z.pdb.
transcription 24-apr-09 3h6z
Title: crystal structure of the four mbt repeats of drosophila melanogaster sfmbt in complex with peptide rhr (me)k vlr
Author: c. grimm, c. w. mueller
Keywords: mbr repeat, aromatic cage, alternative splicing, chromatin regulator, dna-binding, metal-binding, nucleus, repressor, transcription, transcription regulation, zinc, zinc-finger
- 3h8z.pdb.
protein binding 29-apr-09 3h8z
Se
Title: the crystal structure of the tudor domains from fxr2
Author: m. f. amaya, a. dong, m. a. adams-cioaba, y. guo, f. mackenzie, i. kozieradzki, a. m. edwards, c. h. arrowsmith, a. bochkarev, j. min, structural genomics consortium (sgc)
Keywords: fragile x mental retardation, fxr2, structural genomics, structural genomics consortium, sgc, cytoplasm, phosphoprotein, rna-binding, protein binding
- 3h9g.pdb.
transferase 30-apr-09 3h9g
Zn
Title: crystal structure of e. coli mccb + mcca-n7isoasn
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotic, n-p bond formation, antibiotic, antimicrobial, formylation, phosphoprotein, transferase
- 3h9j.pdb.
transferase 30-apr-09 3h9j
Zn Se
Title: crystal structure of e. coli mccb + ampcpp + semet mcca
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotic, n-p bond formation, antibiotic, antimicrobial, formylation, phosphoprotein, transferase
- 3h9q.pdb.
transferase 30-apr-09 3h9q
Zn Se
Title: crystal structure of e. coli mccb + semet mcca
Author: c. a. regni, r. f. roush, d. miller, a. nourse, c. t. walsh, b. a. schulman
Keywords: microcin, protein structure, mccc7, peptide antibiotic, n-p bond formation, antibiotic, antimicrobial, formylation, phosphoprotein, transferase
- 3hah.pdb.
endocytosis 01-may-09 3hah
Ca
Title: crystal structure of human pacsin1 f-bar domain (c2 lattice)
Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
Keywords: syndapin,fap52,f-bar, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, sh3 domain
- 3hai.pdb.
endocytosis 01-may-09 3hai
Ca
Title: crystal structure of human pacsin1 f-bar domain (p21 lattice)
Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
Keywords: syndapin,fap52,f-bar, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, sh3 domain
- 3haj.pdb.
endocytosis 01-may-09 3haj
Ca
Title: crystal structure of human pacsin2 f-bar domain (p212121 lattice)
Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
Keywords: syndapin,fap52,f-bar, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism, sh3 domain
- 3he1.pdb.
structural genomics, unknown function 07-may-09 3he1
Se
Title: secreted protein hcp3 from pseudomonas aeruginosa.
Author: j. osipiuk, x. xu, h. cui, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc22128, hcp3, hcpc, secretion, virulence, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, secreted, unknown function
- 3hem.pdb.
transferase 09-may-09 3hem
Title: structure of mycobacterium tuberculosis mycolic acid cyclopropane synthase cmaa2 in complex with dioctylamine
Author: z. liu, j. c. sacchettini
Keywords: cytoplasm, lipid synthesis, methyltransferase, s-adenosyl-l-methionine, transferase
- 3hff.pdb.
oxidoreductase 11-may-09 3hff
Zn
Title: monomeric human cu,zn superoxide dismutase without zn ligands
Author: k. saraboji, a. nordlund, l. leinartait, m. oliveberg, d. t. logan
Keywords: zinc
- 3hhq.pdb.
hydrolase 15-may-09 3hhq
Cl Na
Title: crystal structure of apo dut1p from saccharomyces cerevisiae
Author: a. u. singer, e. evdokimova, m. kudritska, a. dong, a. m. edwards, a. f. yakunin, a. savchenko
Keywords: beta barrel, apo structure, dutp pyrophosphatase, saccharomyces cerevisiae, molecular replacement, hydrolase, nucleotide metabolism, phosphoprotein
- 3hi0.pdb.
hydrolase 18-may-09 3hi0
Cl Se
Title: crystal structure of putative exopolyphosphatase (17739545) from agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative exopolyphosphatase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
- 3hib.pdb.
hydrolase 19-may-09 3hib
Se
Title: crystal structure of the second sec63 domain of yeast brr2
Author: l. zhang, t. xu, r. zhao
Keywords: atp-binding, helicase, mrna processing, mrna splicing, nucleotide-binding, nucleus, spliceosome, hydrolase
- 3hj9.pdb.
oxidoreductase 21-may-09 3hj9
Mg Se
Title: crystal structure of oxidoreductase (yp_295443.1) from ralstonia eutropha jmp134 at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: oxidoreductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 3hjb.pdb.
isomerase 21-may-09 3hjb
Cl Na Ca
Title: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from vibrio cholerae.
Author: g. minasov, a. halavaty, l. shuvalova, i. dubrovska, j. winsor, l. papazisi, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: pgi, idp01329, cytoplasm, gluconeogenesis, glycolysis, isomerase, structural genomics, center for structural genomics of infectious diseases, csgid
- 3hkv.pdb.
transferase 26-may-09 3hkv
Na
Title: human poly(adp-ribose) polymerase 10, catalytic fragment in complex with an inhibitor 3-aminobenzamide
Author: t. karlberg, m. moche, c. h. arrowsmith, h. berglund, c. bountra, r. collins, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, a. kotzsch, t. k. nielsen, p. nordlund, t. nyman, c. persson, a. k. roos, j. sagemark, p. schutz, m. i. siponen, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wisniewska, h. schuler
Keywords: poly(adp-ribose) polymerase, nad, transferase, structural genomics, structural genomics consortium, sgc, cytoplasm, glycosyltransferase, nucleus, phosphoprotein, polymorphism
- 3hl0.pdb.
oxidoreductase 26-may-09 3hl0
Ca Se
Title: crystal structure of maleylacetate reductase from agrobacterium tumefaciens
Author: c. chang, e. evdokimova, a. mursleen, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: agrobacterium tumefaciens, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, oxidoreductase
- 3hl5.pdb.
ligase 26-may-09 3hl5
Zn
Title: crystal structure of xiap bir3 with cs3
Author: s. g. hymowitz
Keywords: ubl conjugation, ubl conjugation pathway, zinc, zinc-finger
- 3hlz.pdb.
structural genomics, unknown function 28-may-09 3hlz
Ca Se
Title: crystal structure of bt_1490 (np_810393.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: bt_1490, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3hm5.pdb.
transcription 28-may-09 3hm5
Ca
Title: sant domain of human dna methyltransferase 1 associated protein 1
Author: l. dombrovski, w. tempel, m. f. amaya, y. tong, s. ni, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, h. park, h. wu, structural genomics consortium (sgc)
Keywords: chromatin, structural genomics consortium, sgc, activator, chromatin regulator, coiled coil, growth regulation, nucleus, phosphoprotein, repressor, transcription, transcription regulation
- 3hmq.pdb.
ligase 29-may-09 3hmq
Se
Title: 1.9 angstrom resolution crystal structure of a nad synthetase (nade) from salmonella typhimurium lt2 in complex with nad(+)
Author: a. s. halavaty, z. wawrzak, t. skarina, o. onopriyenko, s. n. peterson, a. savchenko, w. f. anderson, center for structural genomics of infectious deseases (csgid)
Keywords: structural genomics, infectious diseases, center for structural genomics of infectious diseases, atp-binding, ligase, nad, nucleotide-binding, csgid
- 3hn7.pdb.
ligase 29-may-09 3hn7
Se
Title: crystal structure of psychrobacter arcticum udp-n- acetylmuramate--l-alanine ligase (yp_263340.1) from psychrobacter arcticum 273-4 at 1.65 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: nucleotide-binding
- 3hof.pdb.
isomerase 02-jun-09 3hof
Title: structure of macrophage migration inhibitory factor (mif) with caffeic acid at 1.9a resolution
Author: l. crawley, j. barker, r. k. y. cheng, m. wood, b. felicetti
Keywords: cytokine, inflammatory response, tautomerase, isomerase, phosphoprotein
- 3hp1.pdb.
transferase 03-jun-09 3hp1
Title: crystal structure of human dck r104m/d133a in complex with l-dt and adp
Author: s. hazra, a. lavie
Keywords: l-dt, dm-dck, dck structure function studies, nucleoside kinase, protein-na complex, dck drug designing, atp-binding, kinase, nucleotide-binding, nucleus, phosphoprotein, transferase
- 3hp7.pdb.
structural genomics, unknown function 03-jun-09 3hp7
Se
Title: putative hemolysin from streptococcus thermophilus.
Author: j. osipiuk, c. hatzos, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc64019, hemolysin, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3hpa.pdb.
hydrolase 03-jun-09 3hpa
Zn
Title: crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea
Author: a. a. fedorov, e. v. fedorov, r. toro, f. m. raushel, s. k. burley, s. c almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: signature of zn ligands, structural genomics, nysgxrc, target 9236e, psi-2, protein structure initiative, new york sgx research center for structural genomics
- 3hpd.pdb.
transferase 04-jun-09 3hpd
Title: structure of hydroxyethylthiazole kinase protein from pyrococcus horikoshii ot3
Author: j. jeyakanthan, s. thamotharan, s. kuramitsu, s. yokoyama, t. h. tahirov, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 6tmn.pdb.
hydrolase (metalloproteinase) 29-jun-87 6tmn
Zn Ca
Title: structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond
Author: d. e. tronrud, h. m. holden, b. w. matthews
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