Recent PDB releases or updates: week of 15 May 2009
- 1arc.pdb.
hydrolase(serine protease) 15-apr-93 1arc
Title: the primary structure and structural characteristics of achromobacter lyticus protease i, a lysine-specific serine protease
Author: y. kitagawa, y. katsube
- 1b71.pdb.
electron transport 26-jan-99 1b71
Zn Fe
Title: rubrerythrin
Author: l. c. sieker, m. holmes, i. le trong, s. turley, b. d. santarsiero, m. - y. liu, j. legall, r. e. stenkamp
Keywords: iron, ferroxidase
- 1b9c.pdb.
luminescent protein 09-feb-99 1b9c
Title: green fluorescent protein mutant f99s, m153t and v163a
Author: r. battistutta, a. negro, g. zanotti
Keywords: chromophore, green fluorescent protein, luminescence, f99s m153t v163a mutant, luminescent protein
- 1bfp.pdb.
luminescence 09-apr-97 1bfp
Title: blue variant of green fluorescent protein
Author: r. m. wachter, s. j. remington
Keywords: blue emission, mutant, fluorophore, bioluminescense, luminescence
- 1c4f.pdb.
signaling protein 21-aug-99 1c4f
Title: green fluorescent protein s65t at ph 4.6
Author: m. a. elsliger, r. m. wachter, k. kallio, g. t. hanson, s. j. remington
Keywords: bioluminescence, photoactive protein, fluorescent tag, ph titration, signaling protein
- 1cv7.pdb.
luminescent protein 23-aug-99 1cv7
Title: crystal structure of enhanced cyan-emission variant of gfp
Author: p. o'brien, m. a. elsliger, k. kallio, s. j. remington
Keywords: bioluminescence, photoactive protein, fluorescent tag, luminescent protein
- 1ema.pdb.
fluorescent protein 01-aug-96 1ema
Se
Title: green fluorescent protein from aequorea victoria
Author: m. ormo, s. j. remington
Keywords: autocatalytic, fluorophore, bioluminescense fluorescent protein
- 1emb.pdb.
fluorescent protein 08-jan-97 1emb
Title: green fluorescent protein (gfp) from aequorea victoria, gln 80 replaced with arg
Author: k. brejc, t. sixma
Keywords: beta-barrel
- 1emc.pdb.
luminescence 31-mar-97 1emc
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1eme.pdb.
luminescence 31-mar-97 1eme
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1emf.pdb.
luminescence 31-mar-97 1emf
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1fws.pdb.
lyase 24-sep-00 1fws
Cd
Title: aquifex aeolicus kdo8p synthase in complex with pep and cadmium
Author: h. s. duewel, s. radaev, j. wang, r. w. woodard, d. l. gatti
Keywords: kdo8p, kdo, pep, a5p, beta/alpha barrel, lyase
- 1fww.pdb.
lyase 24-sep-00 1fww
Cd
Title: aquifex aeolicus kdo8p synthase in complex with pep, a5p and cadmium
Author: h. s. duewel, s. radaev, j. wang, r. w. woodard, d. l. gatti
Keywords: kdo8p, kdo, pep, a5p, beta/alpha barrel, lyase
- 1g7k.pdb.
luminescent protein 10-nov-00 1g7k
Se
Title: crystal structure of dsred, a red fluorescent protein from discosoma sp. red
Author: d. yarbrough, r. m. wachter, k. kallio, m. v. matz, s. j. remington
Keywords: gfp, coral, red, beta barrel, chromophore, dsred, drfp583, luminescent protein
- 1ggx.pdb.
luminescent protein 05-oct-00 1ggx
Title: red fluorescent protein (fp583 or dsred(clontech)) from discosoma sp.
Author: m. a. wall, m. a. socolich, r. ranganathan
Keywords: chromophore, gfp, rfp, fp583, luminescent protein
- 1jc0.pdb.
luminescent protein 07-jun-01 1jc0
Title: crystal structure analysis of a redox-sensitive green fluorescent protein variant in a reduced form
Author: g. t. hanson, r. aggeler, d. oglesbee, m. cannon, r. a. capaldi, r. y. tsien, s. j. remington
Keywords: chromophore, luminescent protein
- 1jc1.pdb.
luminescent protein 07-jun-01 1jc1
Title: crystal structure analysis of a redox-sensitive green fluorescent protein variant in a oxidized form
Author: g. t. hanson, r. aggeler, d. oglesbee, m. cannon, r. a. capaldi, r. y. tsien, s. j. remington
Keywords: chromophore, disulfide bond, luminescent protein
- 1jqi.pdb.
oxidoreductase 07-aug-01 1jqi
Title: crystal structure of rat short chain acyl-coa dehydrogenase complexed with acetoacetyl-coa
Author: k. p. battaile, j. molin-case, r. paschke, m. wang, d. bennett, j. vockley, j. -j. p. kim
Keywords: enzyme-inhibitor complex, oxidoreductase
- 1kp5.pdb.
luminescent protein 28-dec-01 1kp5
Title: cyclic green fluorescent protein
Author: a. hofmann, h. iwai, a. plueckthun, a. wlodawer
Keywords: cyclic protein, green fluorescent protein, luminescent protein
- 1kpk.pdb.
membrane protein 31-dec-01 1kpk
Title: crystal structure of the clc chloride channel from e. coli
Author: r. dutzler, e. b. campbell, m. cadene, b. t. chait, r. mackinnon
Keywords: homodimer
- 1kpl.pdb.
membrane protein 31-dec-01 1kpl
Cl
Title: crystal structure of the clc chloride channel from s. typhimurium
Author: r. dutzler, e. b. campbell, m. cadene, b. t. chait, r. mackinnon
Keywords: homodimer, ion channel
- 1kyp.pdb.
luminescent protein 05-feb-02 1kyp
Mg
Title: crystal structure of an apo green fluorescent protein zn biosensor
Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
Keywords: chromophore, apo structure, luminescent protein
- 1kyr.pdb.
luminescent protein 05-feb-02 1kyr
Mg Cu
Title: crystal structure of a cu-bound green fluorescent protein zn biosensor
Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
Keywords: chromophore, cu binding, luminescent protein
- 1kys.pdb.
luminescent protein 05-feb-02 1kys
Zn
Title: crystal structure of a zn-bound green fluorescent protein biosensor
Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
Keywords: chromophore, zn binding design, luminescent protein
- 1mou.pdb.
luminescent protein 10-sep-02 1mou
I
Title: crystal structure of coral pigment
Author: m. prescott, m. ling, t. beddoe, a. j. oakley, s. dove, o. hoegh- guldberg, r. j. devenish, j. rossjohn
Keywords: chromophore, beta can fold, similar to green fluorescent protein and dsred, luminescent protein
- 1mov.pdb.
luminescent protein 10-sep-02 1mov
I
Title: crystal structure of coral protein mutant
Author: m. prescott, m. ling, t. beddoe, a. j. oakley, s. dove, o. hoegh- guldberg, r. j. devenish, j. rossjohn
Keywords: fluorescent conversion mutant, chromophore, rtms5, luminescent protein
- 1n4p.pdb.
transferase 01-nov-02 1n4p
Cl Zn
Title: protein geranylgeranyltransferase type-i complexed with geranylgeranyl diphosphate
Author: j. s. taylor, t. s. reid, p. j. casey, l. s. beese
Keywords: ggtase, geranylgeranyl, protein prenylation, caax, lipid modification, rap2b
- 1n4q.pdb.
transferase 01-nov-02 1n4q
Cl Zn
Title: protein geranylgeranyltransferase type-i complexed with a ggpp analog and a kkksktkcvil peptide
Author: j. s. taylor, t. s. reid, p. j. casey, l. s. beese
Keywords: ggtase, geranylgeranyl, protein prenylation, caax, lipid modification, rap2b
- 1n4r.pdb.
transferase 01-nov-02 1n4r
Cl Zn
Title: protein geranylgeranyltransferase type-i complexed with a geranylgeranylated kkksktkcvil peptide product
Author: j. s. taylor, t. s. reid, p. j. casey, l. s. beese
Keywords: ggtase, geranylgeranyl, protein prenylation, caax, lipid modification, rap2b
- 1n4s.pdb.
transferase 01-nov-02 1n4s
Cl Zn
Title: protein geranylgeranyltransferase type-i complexed with ggpp and a geranylgeranylated kkksktkcvil peptide product
Author: j. s. taylor, t. s. reid, p. j. casey, l. s. beese
Keywords: ggtase, geranylgeranyl, protein prenylation, caax, lipid modification, rap2b
- 1oxf.pdb.
luminescent protein 02-apr-03 1oxf
Title: expansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins
Author: j. hyun bae, m. rubini, g. jung, g. wiegand, m. h. seifert, m. k. azim, j. s. kim, a. zumbusch, t. a. holak, l. moroder, r. huber, n. budisa
Keywords: chromophore, amino acid incorporation, tryptophan, genetic code, luminescent protein
- 1pfh.pdb.
transport protein 18-aug-95 1pfh
He
(solution NMR)
Title: the phosphorylated form of the histidine-containing phosphocarrier protein hpr
Author: n. a. j. van nuland, r. m. scheek, g. t. robillard
Keywords: transport protein
- 1qzw.pdb.
signaling protein/rna 18-sep-03 1qzw
Title: crystal structure of the complete core of archaeal srp and implications for inter-domain communication
Author: k. r. rosendal, k. wild, g. montoya, i. sinning
Keywords: srp, ribonucleoprotein complex, protein-rna complex, protein targeting, signaling protein/rna complex
- 1rhq.pdb.
hydrolase 14-nov-03 1rhq
Br
Title: crystal structure of the complex of caspase-3 with a bromomethoxyphenyl inhibitor
Author: j. w. becker, j. rotonda, s. m. soisson
Keywords: caspase-3, apopain, cpp32, yama, complex (protease/inhibitor), hydrolase
- 1wd8.pdb.
hydrolase 12-may-04 1wd8
Title: calcium free form of human peptidylarginine deiminase type4 (pad4)
Author: k. arita, h. hashimoto, t. shimizu, k. nakashima, m. yamada, m. sato
Keywords: hydrolase
- 1wd9.pdb.
hydrolase 12-may-04 1wd9
Ca
Title: calcium bound form of human peptidylarginine deiminase type4 (pad4)
Author: k. arita, h. hashimoto, t. shimizu, k. nakashima, m. yamada, m. sato
Keywords: hydrolase
- 1wda.pdb.
hydrolase 12-may-04 1wda
Ca
Title: crystal structure of human peptidylarginine deiminase type4 (pad4) in complex with benzoyl-l-arginine amide
Author: k. arita, h. hashimoto, t. shimizu, k. nakashima, m. yamada, m. sato
Keywords: hydrolase
- 1y1a.pdb.
metal binding protein 17-nov-04 1y1a
Ca
Title: crystal structure of calcium and integrin binding protein
Author: c. j. blamey, c. ceccarelli, u. p. naik, b. j. bahnson
Keywords: calcium, integrin, ef-hand, glutathione, glutathiolation, metal binding protein
- 1ybj.pdb.
metal binding protein 21-dec-04 1ybj
He Hg
(solution NMR)
Title: structural and dynamics studies of both apo and holo forms of the hemophore hasa
Author: n. wolff, n. izadi-pruneyre, j. couprie, m. habeck, j. linge, w. rieping, c. wandersman, m. nilges, m. delepierre, a. lecroisey
Keywords: curved anti-parallel beta-sheet, metal binding protein
- 1yw7.pdb.
hydrolase 17-feb-05 1yw7
Mn
Title: h-metap2 complexed with a444148
Author: c. h. park
- 1yw8.pdb.
hydrolase 17-feb-05 1yw8
Mn
Title: h-metap2 complexed with a751277
Author: c. h. park
- 1yw9.pdb.
hydrolase 17-feb-05 1yw9
F Mn
Title: h-metap2 complexed with a849519
Author: c. h. park
- 2a21.pdb.
transferase 21-jun-05 2a21
Zn
Title: aquifex aeolicus kdo8ps in complex with pep, po4, and zn2+
Author: f. kona, x. xu, j. lu, p. martin, d. l. gatti
- 2a2i.pdb.
transferase 22-jun-05 2a2i
Zn
Title: aquifex aeolicus kdo8ps in complex with pep, a5p, zn2+
Author: f. kona, x. xu, j. lu, p. martin, d. l. gatti
Keywords: kdo8ps, pep, a5p, zn2+, transferase
- 2a4w.pdb.
antimicrobial protein 30-jun-05 2a4w
Cu
Title: crystal structure of mitomycin c-binding protein complexed with copper(ii)-bleomycin a2
Author: n. danshiitsoodol, c. a. de pinho, y. matoba, t. kumagai, m. sugiyama
Keywords: mitomycin c-binding protein, copper(ii)- bleomycin a2, structural genomics, nppsfa, national project on protein structural and functional analyses, antimicrobial protein
- 2a4x.pdb.
antimicrobial protein 30-jun-05 2a4x
Title: crystal structure of mitomycin c-binding protein complexed with metal-free bleomycin a2
Author: n. danshiitsoodol, c. a. de pinho, y. matoba, t. kumagai, m. sugiyama
Keywords: mitomycin c-binding protein, bleomycin a2, antimicrobial protein
- 2aex.pdb.
oxidoreductase 24-jul-05 2aex
Title: the 1.58a crystal structure of human coproporphyrinogen oxidase reveals the structural basis of hereditary coproporphyria
Author: d. s. lee, e. flachsova, m. bodnarova, b. demeler, p. martasek, c. s. raman
Keywords: oxidoreductase
- 2cxe.pdb.
lyase 28-jun-05 2cxe
Title: crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from pyrococcus horikoshii ot3 (form-2 crystal)
Author: e. mizohata, c. mishima, r. akasaka, h. uda, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, lyase
- 2fpf.pdb.
signaling protein 16-jan-06 2fpf
Title: crystal structure of the ib1 sh3 dimer at low resolution
Author: o. kristensen, i. dar, m. gajhede
Keywords: islet-brain-1, ib-1, mitogen-activated protein kinase 8-interacting protein 1, jip-1 related protein, jrp, signaling protein
- 2ga2.pdb.
hydrolase 07-mar-06 2ga2
Cl Mn Br
Title: h-metap2 complexed with a193400
Author: c. park
Keywords: hydrolase
- 2goj.pdb.
oxidoreductase 13-apr-06 2goj
Fe
Title: the crystal structure of the enzyme fe-superoxide dismutase from plasmodium falciparum
Author: m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 2gpc.pdb.
oxidoreductase 17-apr-06 2gpc
Mg Fe
Title: the crystal structure of the enzyme fe-superoxide dismutase from trypanosoma cruzi
Author: m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 2gri.pdb.
viral protein 24-apr-06 2gri
He Hg
(solution NMR)
Title: nmr structure of the sars-cov non-structural protein nsp3a
Author: p. serrano, m. s. almeida, m. a. johnson, t herrmann, k. s. saikatendu, j. joseph, v. subramanian, b. w neuman, m. j buchmeier, r. c. stevens, p. kuhn, k wuthrich, joint center for structural genomics (jcsg)
Keywords: non-structural protein, nsp3, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg, viral protein
- 2i99.pdb.
oxidoreductase 05-sep-06 2i99
Title: crystal structure of human mu_crystallin at 2.6 angstrom
Author: z. cheng, l. sun, j. he, w. gong
Keywords: thyroid hormine binding protein, oxidoreductase
- 2ilm.pdb.
transcription regulator, oxidoreductase 03-oct-06 2ilm
Fe
Title: factor inhibiting hif-1 alpha d201a mutant in complex with fe(ii), alpha-ketoglutarate and hif-1 alpha 35mer
Author: m. a. mcdonough, c. j. schofield
Keywords: hif, dsbh, oxygenase, transcription, hypoxia, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,, transcription regulator, oxidoreductase
- 2ipf.pdb.
oxidoreductase 12-oct-06 2ipf
Title: crystal structure of 17alpha-hydroxysteroid dehydrogenase in complex with nadp+ and epi-testosterone
Author: f. faucher, l. cantin, k. pereira de jesus-tran, v. luu-the, f. labrie, r. breton
Keywords: akr1c21, akr, aldo-keto reductase, hsd, hydroxysteroid dehydrogenase, open conformation, epi- testosterone, oxidoreductase
- 2ipg.pdb.
oxidoreductase 12-oct-06 2ipg
Title: crystal structure of 17alpha-hydroxysteroid dehydrogenase mutant k31a in complex with nadp+ and epi-testosterone
Author: f. faucher, l. cantin, k. pereira de jesus-tran, m. lemieux, v. luu- the, f. labrie, r. breton
Keywords: akr1c21, akr, aldo-keto reductase, hsd, hydroxysteroid dehydrogenase, open conformation, epi- testosterone, oxidoreductase
- 2ipj.pdb.
oxidoreductase 12-oct-06 2ipj
Title: crystal structure of h3alpha-hydroxysteroid dehydrogenase type 3 mutant y24a in complex with nadp+ and epi- testosterone
Author: f. faucher, l cantin, k. pereira de jesus-tran, v. luu-the, f. labrie, r. breton
Keywords: akr1c21, akr, aldo-keto reductase, hsd, hydroxysteroid dehydrogenase, open conformation, epi- testosterone, oxidoreductase
- 2jv7.pdb.
metal binding protein 12-sep-07 2jv7
He Hg
(solution NMR)
Title: nmr solution structure of histoplasma capsulatum cbp homodimer
Author: m. r. beck, g. t. dekoster, d. p. cistola, w. e. goldman
Keywords: calcium binding protein, homodimer, nmr, all alpha helical, glycoprotein, secreted, metal binding protein
- 2k3u.pdb.
immune system 16-may-08 2k3u
He Hg
(solution NMR)
Title: structure of the tyrosine-sulfated c5a receptor n-terminus in complex with the immune evasion protein chips.
Author: j. h. ippel, a. bunschoten, j. kemmink, r. liskamp
Keywords: sulfated tyrosine, gpcr membrane protein c5ar, anaphylotoxin c5a, staphylococcus aureus, complement cascade, secreted, virulence, immune system
- 2k4k.pdb.
rna binding protein 13-jun-08 2k4k
He Hg
(solution NMR)
Title: solution structure of gsp13 from bacillus subtilis
Author: w. yu, b. yu, j. hu, c. jin, b. xia
Keywords: cytoplasm, stress response, rna binding protein
- 2k7r.pdb.
replication 19-aug-08 2k7r
He Hg Zn
(solution NMR)
Title: n-terminal domain of the bacillus subtilis helicase-loading protein dnai
Author: k. v. loscha, k. jaudzems, c. ioannou, x. c. su, f. r. hill, g. otting, n. e. dixon, e. liepinsh
Keywords: helicase-loading protein, atp- binding, dna replication, nucleotide-binding, primosome
- 2k7x.pdb.
hydrolase 28-aug-08 2k7x
He Hg
(solution NMR)
Title: solution structure of c-terminal domain of sars-cov main protease
Author: b. xia, n. zhong
Keywords: c-terminal domain, main protease, hydrolase
- 2k9n.pdb.
dna binding protein 19-oct-08 2k9n
He Hg
(solution NMR)
Title: solution nmr structure of the r2r3 dna binding domain of myb1 protein from protozoan parasite trichomonas vaginalis
Author: y. lou, s. wei, m. rajasekaran, c. chou, h. hsu, j. tai, c. chen
Keywords: r2r3 domain, dna-binding, nucleus, dna binding protein
- 2kam.pdb.
toxin 11-nov-08 2kam
He Hg
(solution NMR)
Title: nmr structure of delta-toxin from staphylococcus aureus in cd3oh
Author: n. loureiro-ferreira, j. rodrigues, r. m. m. brito
Keywords: cytolytic, cytolysis, formylation, hemolysis, membrane, secreted, toxin, transmembrane
- 2kd9.pdb.
dna 05-jan-09 2kd9
Ho
(solution NMR)
Title: solution structure of dna containing alpha-oh-pdg: the mutagenic adduct produced by acrolein
Author: c. de los santos, t. zaliznyak, f. johnson, r. bonala, s. attaluri
Keywords: dna damaged, dna structure, exocyclic, propano-dg lesions
- 2kda.pdb.
dna 05-jan-09 2kda
Ho
(solution NMR)
Title: solution structure of dna containing alpha-oh-pdg: the mutagenic adduct produced by acrolein
Author: c. de los santos, t. zaliznyak, f. johnson, r. bonala, s. attaluri
Keywords: dna damaged, dna structure, exocyclic, propano-dg lesions
- 2kdp.pdb.
transcription 14-jan-09 2kdp
He Hg Zn
(solution NMR)
Title: solution structure of the sap30 zinc finger motif
Author: y. he, r. imhoff, a. sahu, i. radhakrishnan
Keywords: sin3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription, transcription regulation
- 2kds.pdb.
ribosomal protein 15-jan-09 2kds
He Hg
(solution NMR)
Title: structure of ribosomal protien l14e from sulfolobus solfataricus
Author: s. p. edmondson, j. w. shriver
Keywords: hyperthmophile, sh3, ribonucleoprotein, ribosomal protein
- 2kgk.pdb.
oxidoreductase 12-mar-09 2kgk
He Hg Ho
(solution NMR)
Title: solution structure of bacillus anthracis dihydrofolate reductase
Author: l. deshmukh, o. vinogradova, j. m. beierlein, k. m. frey, a. c. anderson
Keywords: oxidoreductase
- 2khh.pdb.
transport protein 06-apr-09 2khh
He Hg
(solution NMR)
Title: structural requirements for the uba domain of the mrna export factor mex67 to bind its specific targets, the transcription elongation tho complex component hpr1 and nucleoporin fxfg repeats
Author: m. hobeika, c. brockmann, f. gruessing, d. neuhaus, g. divita, m. stewart, c. dargemont
Keywords: uba, fxfg, mrna export, cytoplasm, leucine-rich repeat, mrna transport, nucleus, transport, transport protein
- 2khl.pdb.
dna binding protein 08-apr-09 2khl
He Hg
(solution NMR)
Title: refined solution structure of methanosarcina thermophila protein mc1
Author: f. paquet, h. meudal, f. culard, g. lancelot
Keywords: alpha and beta, dna-binding, dna binding protein
- 2kho.pdb.
chaperone 10-apr-09 2kho
(solution NMR)
Title: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone (1-605) complexed with adp and substrate
Author: e. r. p. zuiderweg, e. b. bertelsen
Keywords: stress response, transcription
- 2ki9.pdb.
membrane protein 28-apr-09 2ki9
Hg
(solution NMR)
Title: human cannabinoid receptor-2 helix 6
Author: l. deshmukh, o. vinogradova, e. k. tiburu, s. tyukhtenko, d. r. janero, a. makriyannis
Keywords: gpcr, g-protein coupled receptor, membrane protein
- 2nxa.pdb.
hydrolase 17-nov-06 2nxa
Zn
Title: structure of zn-dependent metallo-beta-lactamase from bacillus cereus r121h, c221d double mutant
Author: f. j. medrano martin, a. j. vila, j. m. gonzalez
Keywords: r121h-c221d double mutant, hydrolase
- 2nyp.pdb.
hydrolase 21-nov-06 2nyp
Zn
Title: structure of beta-lactamase ii from bacillus cereus. r121h, c221d doble mutant with two zinc ions.
Author: f. j. medrano martin, a. j. vila, j. m. gonzalez
Keywords: bacillus cereus, hydrolase
- 2nze.pdb.
hydrolase 23-nov-06 2nze
Zn
Title: structure of beta-lactamase ii from bacillus cereus. r121h, c221s double mutant. space group p3121.
Author: f. j. medrano martin, a. j. vila, j. m. gonzalez
Keywords: bacillus cereus, hydrolase
- 2nzf.pdb.
hydrolase 23-nov-06 2nzf
Zn
Title: structure of beta-lactamase ii from bacillus cereus. r121h, c221s double mutant. space group c2.
Author: f. j. medrano martin, a. j. vila, j. m. gonzalez
Keywords: bacillus cereus, hydrolase
- 2oag.pdb.
hydrolase 15-dec-06 2oag
F
Title: crystal structure of human dipeptidyl peptidase iv (dppiv) with pyrrolidine-constrained phenethylamine 29g
Author: b. j. backes, k. l. longenecker, g. l. hamilton, k. d. stewart, c. lai, h. kopecka
Keywords: inhibitor complex, hydrolase
- 2oe4.pdb.
hydrolase 28-dec-06 2oe4
Cl
Title: high pressure psuedo wild type t4 lysozyme
Author: m. d. collins, m. l. quillin, b. w. matthews, s. m. gruner
Keywords: t4 lyzoyme, hydrolase
- 2oeu.pdb.
rna 01-jan-07 2oeu
Mn Br
Title: full-length hammerhead ribozyme with mn(ii) bound
Author: m. martick, w. g. scott
Keywords: hammerhead rna, stem-loop interaction, uridine turn, a-form helix, manganese, mn
- 2oow.pdb.
isomerase 26-jan-07 2oow
F
Title: mif bound to a fluorinated oxim derivative
Author: g. v. crichlow, y. al-abed, e. lolis
Keywords: isomerase
- 2ox1.pdb.
lyase 19-feb-07 2ox1
Title: archaeal dehydroquinase
Author: d. t. gallagher, n. n. smith
Keywords: lyase
- 2pbw.pdb.
membrane protein 29-mar-07 2pbw
Title: crystal structure of the ligand-binding core of iglur5 in complex with the partial agonist domoic acid at 2.5 a resolution
Author: h. hald, p. naur, m. gajhede, j. s. kastrup
Keywords: membrane protein
- 2pn7.pdb.
transferase 24-apr-07 2pn7
Title: human gamma-glutamyl cyclotransferase
Author: a. j. oakley, p. g. board
Keywords: dimer, human gamma-glutamyl cyclotransferase
- 2qhd.pdb.
hydrolase 02-jul-07 2qhd
Title: crystal structure of ecarpholin s (ser49-pla2) complexed with fatty acid
Author: x. zhou, t. c. tan, s. valiyaveettil, m. l. go, r. m. kini, j. sivaraman
Keywords: three helices, protein-ligand complex, hydrolase
- 2qlg.pdb.
fluorescent protein 12-jul-07 2qlg
Title: mplum
Author: x. shu, s. j. remington
Keywords: acylimine
- 2rpp.pdb.
transcription 24-jun-08 2rpp
He Hg Zn
(solution NMR)
Title: solution structure of tandem zinc finger domain 12 in muscleblind-like protein 2
Author: c. abe, w. dang, k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2v5w.pdb.
hydrolase 10-jul-07 2v5w
K Zn
Title: crystal structure of hdac8-substrate complex
Author: s. di marco, a. vannini, c. volpari, p. gallinari, p. jones, m. mattu, a. carfi, r. defrancesco, c. steinkuhler
Keywords: chromatin regulator, p53, hdac, hdac8, nucleus, repressor, hydrolase, nuclear protein, peptidic substrate, alternative splicing, transcription regulation, chromatin, transcription, deacetylation
- 2vf1.pdb.
virus 29-oct-07 2vf1
Title: x-ray crystallographic structure of the picobirnavirus capsid
Author: s. duquerroy, b. da costa, a. vigouroux, j. lepault, j. navaza, b. delmas, f. a. rey
Keywords: viral protein, picobirnavirus, capsid protein, triacontahedron, virus
- 2vma.pdb.
transport protein 25-jan-08 2vma
I Ca Se
Title: the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae
Author: j. abendroth, k. v. korotkov, d. d. mitchell, a. kreger, w. g. j. hol
Keywords: inner membrane, type 2 secretion, t4pb, t2ss, vibrio, cholera, membrane, transport, protein secretion, transport protein
- 2vmb.pdb.
transport protein 25-jan-08 2vmb
Ca
Title: the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae
Author: j. abendroth, k. v. korotkov, d. d. mitchell, a. kreger, w. g. j. hol
Keywords: inner membrane, type 2 secretion, t4pb, t2ss, vibrio, cholera, membrane, transport, protein secretion, transport protein
- 2vx9.pdb.
flavoprotein 01-jul-08 2vx9
Cl Na
Title: h. salinarum dodecin e45a mutant
Author: m. grininger, h. staudt, p. johansson, j. wachtveitl, d. oesterhelt
Keywords: flavin, archaea, dodecin, riboflavin, lumichrome
- 2vxa.pdb.
flavoprotein 01-jul-08 2vxa
Cl
Title: h.halophila dodecin in complex with riboflavin
Author: m. grininger, h. staudt, p. johansson, j. wachtveitl, d. oesterhelt
Keywords: dodecin, flavin, riboflavin, lumichrome, archaea
- 2vya.pdb.
hydrolase 22-jul-08 2vya
Cl U
Title: crystal structure of fatty acid amide hydrolase conjugated with the drug-like inhibitor pf-750
Author: m. mileni, d. s. johnson, z. wang, d. s. everdeen, m. liimatta, b. pabst, k. bhattacharya, r. a. nugent, s. kamtekar, b. f. cravatt, k. ahn, r. c. stevens
Keywords: fatty acid amide hydrolyse, golgi apparatus, endoplasmic reticulum, inhibitor, drug- like, transmembrane, faah, chimera, membrane, covalent, humanized
- 2vze.pdb.
ligase 31-jul-08 2vze
Mg
Title: crystal structure of human acyl-coa synthetase medium-chain family member 2a (l64p mutation) in complex with amp
Author: w. w. yue, g. t. kochan, e. s. pilka, c. bhatia, f. von delft, c. h. arrowsmith, a. m. edwards, m. wikstrom, c. bountra, u. oppermann
Keywords: mitochondrion, metal-binding, transit peptide, lipid metabolism, nucleotide-binding, magnesium, atp-binding, polymorphism, adenylate-forming enzyme, fatty acid metabolism, fatty acid-coa ligase
- 2w16.pdb.
receptor 14-oct-08 2w16
Fe
Title: structures of fpva bound to heterologous pyoverdines
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w27.pdb.
signaling protein 24-oct-08 2w27
Ca
Title: crystal structure of the bacillus subtilis ykui protein, with an eal domain, in complex with substrate c-di-gmp and calcium
Author: s. padavattan, w. f. anderson, t. schirmer
Keywords: signaling protein, structural genomics, psi, mcsg, eal domain, ykui protein, cyclic di-gmp
- 2w3d.pdb.
transferase 12-nov-08 2w3d
Fe Ca Se
Title: structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
- 2w3e.pdb.
transferase 12-nov-08 2w3e
Fe Ca
Title: oxidized structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
- 2w3f.pdb.
transferase 12-nov-08 2w3f
Fe
Title: reduced structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
- 2w3g.pdb.
transferase 12-nov-08 2w3g
Fe Ca
Title: air-oxidized structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
- 2w3h.pdb.
transferase 12-nov-08 2w3h
Fe Ca
Title: cyanide bound structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
- 2w57.pdb.
metal transport 05-dec-08 2w57
Zn
Title: crystal structure of the vibrio cholerae ferric uptake regulator (fur) reveals structural rearrangement of the dna-binding domains
Author: m. a. sheikh, g. l. taylor
Keywords: vibrio cholerae, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, dna-binding, transcription, metal-binding, ferric uptake
- 2w6t.pdb.
receptor 19-dec-08 2w6t
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(dsm50106)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter, membrane protein
- 2w6u.pdb.
membrane protein 19-dec-08 2w6u
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(g173)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: fpva, iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporterfpva, tonb-dependent transporter
- 2w73.pdb.
metal-binding protein 19-dec-08 2w73
Ca
Title: high-resolution structure of the complex between calmodulin and a peptide from calcineurin a
Author: v. majava, p. kursula
Keywords: peptide, ef hand, nucleus
- 2w75.pdb.
receptor 20-dec-08 2w75
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: apo-fpva
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w76.pdb.
receptor 20-dec-08 2w76
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(pa6)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w77.pdb.
receptor 20-dec-08 2w77
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(pfl18.1)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w78.pdb.
receptor 20-dec-08 2w78
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(atcc13535)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w7r.pdb.
transferase 24-dec-08 2w7r
Title: structure of the pdz domain of human microtubule associated serine-threonine kinase 4
Author: j. r. c. muniz, j. elkins, j. wang, p. savitzky, a. roos, e. salah, f. vondelft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, s. knapp
Keywords: kinase 4, cytoplasm, magnesium, pdz domain, alternative splicing, serine/threonine-protein kinase, transferase, atp-binding, polymorphism, metal-binding, phosphoprotein, nucleotide-binding
- 2w8d.pdb.
transferase 15-jan-09 2w8d
Mg Se
Title: distinct and essential morphogenic functions for wall- and lipo-teichoic acids in bacillus subtilis
Author: k. schirner, j. marles-wright, r. j. lewis, j. errington
Keywords: phosphatase, cell membrane, transmembrane, lta, wta, membrane, secreted, cell wall, b.subtilis, lipotechoic acid, cell wall biogenesis/degradation acid
- 2w8z.pdb.
oxidoreductase 20-jan-09 2w8z
Title: geobacillus stearothermophilus 6-phosphogluconate with bound 6-phosphogluconate
Author: s. cameron, w. n. hunter
Keywords: 6pdh, phsophogluconate, dehydrogenase, geobacillus
- 2w90.pdb.
oxidoreductase 20-jan-09 2w90
Title: geobacillus stearothermophilus 6-phosphogluconate with bound 6-phosphogluconate
Author: s. cameron, v. p. martini, j. iulek, w. n. hunter
Keywords: geobacillus, dehydrogenase, phsophogluconate, oxidoreductase
- 2w9a.pdb.
transferase/dna 22-jan-09 2w9a
Mg
Title: ternary complex of dpo4 bound to n2,n2-dimethyl- deoxyguanosine modified dna with incoming dgtp
Author: r. l. eoff, h. zhang, i. d. kosekov, c. j. rizzo, m. egli, f. p. guengerich
Keywords: magnesium, polymerase
- 2w9b.pdb.
transferase/dna 22-jan-09 2w9b
Mg
Title: binary complex of dpo4 bound to n2,n2-dimethyl- deoxyguanosine modified dna
Author: r. l. eoff, h. zhang, i. d. kosekov, c. j. rizzo, m. egli, f. p. guengerich
Keywords: polymerase
- 2w9c.pdb.
transferase/dna 22-jan-09 2w9c
Mg
Title: ternary complex of dpo4 bound to n2,n2-dimethyl- deoxyguanosine modified dna with incoming dttp
Author: r. l. eoff, h. zhang, i. d. kosekov, c. j. rizzo, m. egli, f. p. guengerich
Keywords: polymerase
- 2wa8.pdb.
peptide-binding protein 03-feb-09 2wa8
Title: structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps - the phe peptide structure
Author: v. j. schuenemann, s. m. kralik, r. albrecht, s. k. spall, k. n. truscott, d. a. dougan, k. zeth
Keywords: phe peptide, clps, clpa, clpp, peptide-binding protein
- 2wbi.pdb.
oxidoreductase 28-feb-09 2wbi
U
Title: crystal structure of human acyl-coa dehydrogenase 11
Author: j. r. c. muniz, k. guo, p. savitsky, a. roos, w. yue, e. pilka, f. vondelft, a. m. edwards, c. bountra, c. h. arrowsmith, j. weigelt, u. oppermann
Keywords: acyl-coa, polymorphism, dehydrogenase, phosphoprotein, oxidoreductase, alternative splicing
- 2wcc.pdb.
protein/dna 11-mar-09 2wcc
He Hg Ho
(solution NMR)
Title: phage lambda intdbd1-64 complex with p prime 2 dna
Author: e. a. fadeev, m. d. sam, r. t. clubb
Keywords: dna recombination, excision, integration, phage lambda, recombination, protein dna complex, protein/dna
- 2wcq.pdb.
immune system 13-mar-09 2wcq
Title: crystal structure of tip-alpha n34 (hp0596) from helicobacter pylori at ph4
Author: t. tosi, g. cioci, k. jouravleva, c. dian, l. terradot
Keywords: tip-alpha, helicobacter pylori, immune system
- 2wcr.pdb.
immune system 13-mar-09 2wcr
Ni
Title: crystal structure of tip-alpha n34 (hp0596) from helicobacter pylori at ph8
Author: t. tosi, g. cioci, k. jouravleva, c. dian, l. terradot
Keywords: tip-alpha, helicobacter pylori, immune system
- 2wd1.pdb.
transferase 19-mar-09 2wd1
Title: human c-met kinase in complex with azaindole inhibitor
Author: j. porter, s. lumb, r. j. franklin, j. m. gascon-simorte, m. calmiano, k. le riche, b. lallemand, j. keyaerts, h. edwards, a. maloney, j. delgado, l. king, a. foley, f. lecomte, j. reuberson, c. meier, m. batchelor
Keywords: c-met, azaindole, inhibitor, transferase, kinase, nucleotide-binding, atp-binding, tyrosine-protein kinase
- 2wd9.pdb.
ligase 21-mar-09 2wd9
Mg
Title: crystal structure of human acyl-coa synthetase medium-chain family member 2a (l64p mutation) in complex with ibuprofen
Author: w. w. yue, g. t. kochan, e. s. pilka, c. bhatia, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, u. oppermann
Keywords: atp-binding, polymorphism
- 2wf4.pdb.
hydrolase 02-apr-09 2wf4
Title: human bace-1 in complex with 6-ethyl-1-methyl-n-((1s)-2-oxo- 1-(phenylmethyl)-3-(tetrahydro-2h-pyran-4-ylamino)propyl)- 1,3,4,6-tetrahydro(1,2)thiazepino(5,4,3-cd)indole-8- carboxamide 2,2-dioxide
Author: n. charrier, b. clarke, l. cutler, e. demont, c. dingwall, r. dunsdon, j. hawkins, c. howes, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wfw.pdb.
atp-binding protein 15-apr-09 2wfw
Title: structure and activity of the n-terminal substrate recognition domains in proteasomal atpases - the arc domain structure
Author: s. djuranovic, m. d. hartmann, m. habeck, a. ursinus, p. zwickl, j. martin, a. n. lupas, k. zeth
Keywords: proteasomal atpases, pan, arc, aaa, atp-binding, nucleotide-binding
- 2wgx.pdb.
cell cycle 27-apr-09 2wgx
Zn
Title: human p53 core domain mutant m133l-v203a-y236f-n239y-t253i- n268d
Author: a. c. joerger, k. h. khoo, a. r. fersht
Keywords: li-fraumeni syndrome, metal binding, zinc, superstable mutant, dna-binding protein, polymorphism
- 2wgy.pdb.
oxidoreductase 28-apr-09 2wgy
Fe
Title: crystal structure of the g243a mutant of cyp130 from m. tuberculosis
Author: l. m. podust, h. ouellet, j. p. von kries, p. r. ortiz de montellano
Keywords: cyp130, heme, hypothetical protein, iron, metal-binding, monooxygenase, mycobacterium tuberculosis, oxidoreductase, p450
- 2z3u.pdb.
oxidoreductase 06-jun-07 2z3u
Fe
Title: crystal structure of chromopyrrolic acid bound cytochrome p450 stap (cyp245a1)
Author: m. makino, h. sugimoto, y. shiro, s. asamizu, h. onaka, s. nagano
Keywords: monoxygenase, oxydoreductase, heme-enzyme, chromopyrrolic acid, oxidoreductase
- 2zo6.pdb.
luminescent protein 06-may-08 2zo6
Title: crystal structure of kusabira-cyan (kcy), a cyan-emitting gfp-like protein
Author: a. kikuchi, e. fukumura, s. karasawa, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
Keywords: luminescent protein, structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 2zo7.pdb.
luminescent protein 06-may-08 2zo7
Title: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-emitting gfp-like protein
Author: a. kikuchi, e. fukumura, s. karasawa, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
Keywords: luminescent protein, structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 3a1l.pdb.
oxidoreductase 09-apr-09 3a1l
Cl Fe
Title: crystal structure of 11,11'-dichlorochromopyrrolic acid bound cytochrome p450 stap (cyp245a1)
Author: m. makino, h. sugimoto, y. shiro, s. asamizu, h. onaka, s. nagano
Keywords: cytochrome p450, monooxygenase, heme-enzyme, heme, iron, metal-binding
- 3b8c.pdb.
hydrolase 01-nov-07 3b8c
Mg
Title: crystal structure of a plasma membrane proton pump
Author: b. p. pedersen, m. j. buch-pedersen, j. p. morth, m. g. palmgren, p. nissen
Keywords: acetylation
- 3bgt.pdb.
lyase 27-nov-07 3bgt
Se
Title: structural studies of acetoacetate decarboxylase
Author: m. ho, k. n. allen
Keywords: lyase, schiff base
- 3bvm.pdb.
toxin 07-jan-08 3bvm
Zn
Title: manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex
Author: s. cho
Keywords: enterotoxin, secreted, superantigen, toxin
- 3bvz.pdb.
toxin 07-jan-08 3bvz
Zn
Title: manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex
Author: s. cho
Keywords: enterotoxin, secreted, superantigen, toxin
- 3byt.pdb.
toxin 16-jan-08 3byt
Title: a complex between a variant of staphylococcal enterotoxin c3 and the variable domain of the murine t cell receptor beta chain 8.2
Author: s. cho, j. s. eric
Keywords: superantigen, toxin
- 3byy.pdb.
toxin 16-jan-08 3byy
Title: manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex
Author: s. cho, j. s. eric
Keywords: superantigen, toxin
- 3bzd.pdb.
toxin 17-jan-08 3bzd
Title: manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex
Author: s. cho
Keywords: secreted, toxin
- 3c14.pdb.
lyase/lyase inhibitor 22-jan-08 3c14
Cl Mg Ca
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with pyrophosphate and ca
Author: t. -c. mou, s. r. sprang
Keywords: nucleotide-binding, palmitate, transducer, lyase/lyase inhibitor complex
- 3c15.pdb.
lyase/lyase inhibitor 22-jan-08 3c15
Cl Mg
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with pyrophosphate and mg
Author: t. -c. mou, s. r. sprang
Keywords: palmitate, transducer, lyase/lyase inhibitor complex
- 3c16.pdb.
lyase/lyase inhibitor 22-jan-08 3c16
Cl Mg Ca
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with adenosine-5'-triphosphate and ca
Author: t. -c. mou, s. r. sprang
Keywords: palmitate, transducer, lyase/lyase inhibitor complex
- 3c3g.pdb.
de novo protein 28-jan-08 3c3g
Hg
Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-beta) backbone
Author: w. s. horne, j. l. price, s. h. gellman
Keywords: foldamer, coiled coil, alpha/beta-peptide, unknown function, de novo protein
- 3c6q.pdb.
sugar binding protein 05-feb-08 3c6q
Title: apo and ligand-bound form of a thermophilic glucose/xylose binding protein
Author: m. j. cuneo, h. w. hellinga
Keywords: xylose binding protein, periplasmic binding protein, glucose, xylose, sugar binding protein
- 3cf2.pdb.
transport protein 01-mar-08 3cf2
Title: structure of p97/vcp in complex with adp/amp-pnp
Author: j. m. davies, b. delabarre, a. t. brunger, w. i. weis
Keywords: cdc48, erad, atpase, transport protein
- 3cmp.pdb.
antimicrobial protein 24-mar-08 3cmp
Na Fe
Title: crystal structure of siderocalin (ngal, lipocalin 2) k125a mutant complexed with ferric enterobactin
Author: m. c. clifton, r. k. strong
Keywords: siderocalin, enterobactin, siderophore, iron, glycoprotein, pyrrolidone carboxylic acid, secreted, antimicrobial protein
- 3ct4.pdb.
transferase 11-apr-08 3ct4
Title: structure of dha-kinase subunit dhak from l. lactis
Author: j. m. jeckelmann, a. zurbriggen, s. christen, u. baumann, b. erni
Keywords: dihydroxyacetone kinase subunit, tranferase, covalently linked 2ha, glycerol metabolism, transferase
- 3cxn.pdb.
chaperone 24-apr-08 3cxn
Se
Title: structure of the urease accessory protein uref from helicobacter pylori
Author: r. lam, k. johns, v. romanov, a. dong, j. wu-brown, j. guthrie, a. dharamsi, d. thambipillai, k. mansoury, a. m. edwards, e. f. pai, n. y. chirgadze
Keywords: nickel, chaperone
- 3d0o.pdb.
oxidoreductase 02-may-08 3d0o
Title: crystal structure of lactate dehydrogenase from staphylococcus aureus
Author: m. ho, j. a. gutierrez, s. c. almo, v. l. schramm
Keywords: staphylococcus aureus, cytoplasm, glycolysis, nad, oxidoreductase, phosphoprotein
- 3d15.pdb.
transferase 04-may-08 3d15
Cl
Title: crystal structure of mouse aurora a (asn186->gly, lys240- >arg, met302->leu) in complex with 1-(3-chloro-phenyl)-3- {5-[2-(thieno[3,2-d]pyrimidin-4-ylamino)- ethyl]-thiazol-2- yl}-urea [sns-314]
Author: r. a. elling, m. bui, d. a. allen, j. d. oslob, m. j. romanowski
Keywords: small-molecule inhibitor, kinase, transferase
- 3d1a.pdb.
oxygen storage, oxygen transport 05-may-08 3d1a
Fe
Title: crystal structure determination of goat hemoglobin at 2.61 angstrom resolution
Author: pon. sathya moorthy, k. neelagandan, m. balasubramanian, m. n. ponnuswamy
Keywords: low oxygen affinity, heme, iron, metal- binding, polymorphism, transport, oxygen storage, oxygen transport
- 3d1d.pdb.
nuclear protein 05-may-08 3d1d
Title: hexagonal crystal structure of tas3 c-terminal alpha motif
Author: h. li, d. j. patel
Keywords: rits complex immunoglobulin fold, cell cycle, chromosome partition, nucleus, rna-mediated gene silencing, nuclear protein
- 3d1i.pdb.
oxidoreductase 06-may-08 3d1i
He Hg Na Fe Ca
Title: structure of the complex a hexameric multiheme c nitrite reductase from the extremophile bacterium thiolkalivibrio nitratireducens with nitrite ion
Author: k. m. polyakov, k. m. boyko, a. slutsky, t. v. tikhonova, a. n. antipov, r. a. zvyagilskaya, a. n. popov, v. s. lamzin, g. p. bourenkov, v. o. popov
Keywords: nrfa, sulfite reductase, oxidoreductase
- 3d1t.pdb.
hydrolase, biosynthetic protein 06-may-08 3d1t
Cl Zn Se
Title: crystal structure of gcyh-ib
Author: b. sankaran, m. a. swairjo
Keywords: tunneling fold, folate biosynthesis, gtp cyclohydrolase, metalloenzyme, metal binding protein, hydrolase, biosynthetic protein
- 3d2i.pdb.
transferase 08-may-08 3d2i
F
Title: crystal structure of mouse aurora a (asn186->gly, lys240- >arg, met302->leu) in complex with 1-{5-[2-(1-methyl-1h- pyrazolo[4,3-d]pyrimidin-7-ylamino)-ethyl]-thiazol-2-yl}-3- (3-trifluoromethyl-phenyl)-urea
Author: j. d. oslob, c. yu, m. j. romanowski
Keywords: small-molecule inhibitor, kinase, transferase
- 3d2k.pdb.
transferase 08-may-08 3d2k
Cl
Title: crystal structure of mouse aurora a (asn186->gly, lys240- >arg, met302->leu) in complex with [7-(2-{2-[3-(3-chloro- phenyl)-ureido]-thiazol-5-yl}-ethylamino)-pyrazolo[4,3- d]pyrimidin-1-yl]-acetic acid
Author: r. a. elling, j. d. oslob, c. yu, m. j. romanowski
Keywords: small-molecule inhibitor, kinase, transferase
- 3d2o.pdb.
hydrolase, biosynthetic protein 08-may-08 3d2o
Cl Mn Li
Title: crystal structure of manganese-metallated gtp cyclohydrolase type ib
Author: m. a. swairjo
Keywords: tunneling fold, folate biosynthesis, gtp cyclohydrolase, metalloenzyme, manganese, hydrolase, biosynthetic protein
- 3d8c.pdb.
transcription regulator, oxidoreductase 23-may-08 3d8c
Zn
Title: factor inhibiting hif-1 alpha d201g mutant in complex with zn(ii), alpha-ketoglutarate and hif-1 alpha 19mer
Author: m. a. mcdonough, r. chowdhury, c. j. schofield
Keywords: transcription regulation
- 3d8m.pdb.
virus/viral protein 23-may-08 3d8m
Title: crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies tp901-1 and p2
Author: m. i. siponen, s. blangy, s. spinelli, c. cambillau, v. campanacci
Keywords: lactococcal phage tp901-1, receptor binding protein, virus/viral protein complex
- 3da8.pdb.
transferase 28-may-08 3da8
Mg I
Title: crystal structure of purn from mycobacterium tuberculosis
Author: z. zhang, c. j. squire, e. n. baker
Keywords: purn, structure, transferase
- 3dar.pdb.
transferase 30-may-08 3dar
Title: crystal structure of d2 domain from human fgfr2
Author: a. brown, t. l. blundell
Keywords: membrane, nucleotide-binding, phosphoprotein, polymorphism, receptor, secreted, transferase, transmembrane, tyrosine-protein kinase
- 3dcj.pdb.
transferase 03-jun-08 3dcj
Cl Mg
Title: crystal structure of glycinamide formyltransferase (purn) from mycobacterium tuberculosis in complex with 5-methyl-5, 6,7,8-tetrahydrofolic acid derivative
Author: z. zhang, c. j. squire, e. n. baker
Keywords: purn
- 3dit.pdb.
signaling protein 20-jun-08 3dit
Title: crystal structure of mad mh2 domain
Author: r. hao, j. w. wu, z. x. wang
Keywords: tgf-beta, mh2, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription, transcription regulation, ubl conjugation, signaling protein
- 3dk1.pdb.
hydrolase 24-jun-08 3dk1
Cl Na
Title: wild type hiv-1 protease with potent antiviral inhibitor grl-0105a
Author: y. f. wang, i. t. weber
Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger
- 3dks.pdb.
oxidoreductase 25-jun-08 3dks
Title: dsba substrate complex
Author: j. j. paxman, n. a. borg, j. horne, j. rossjohn, p. e. thompson, s. piek, c. m. kahler, h. sakellaris, m. j. scanlon
Keywords: mixed disulfide, periplasm, redox-active center, protease, oxidoreductase
- 3dn5.pdb.
oxidoreductase 01-jul-08 3dn5
Title: aldose reductase in complex with novel biarylic inhibitor
Author: h. steuber, g. klebe
Keywords: nadph binding site, acetylation, cataract, cytoplasm, nadp, oxidoreductase, phosphoprotein, polymorphism
- 3dt6.pdb.
hydrolase 14-jul-08 3dt6
Title: crystal structure of bovin brain platelet activating factor acetylhydrolase covalently inhibited by paraoxon
Author: t. m. epstein, u. samanta, b. j. bahnson
Keywords: paf-ah ib, alpha-1 subunit, lis1, group viii phospholipase a2, 26 kda, paraoxon, cytoplasm, hydrolase, lipid degradation, platelet factor
- 3dt8.pdb.
hydrolase 14-jul-08 3dt8
Title: crystal structure of bovin brain platelet activating factor acetylhydrolase covalently inhibited by sarin
Author: t. m. epstein, u. samanta, b. j. bahnson
Keywords: paf-ah ib, alpha-1 subunit, lis1, group viii phospholipase a2, 26 kda, sarin, cytoplasm, hydrolase, lipid degradation, platelet factor
- 3dt9.pdb.
hydrolase 14-jul-08 3dt9
Title: crystal structure of bovin brain platelet activating factor acetylhydrolase covalently inhibited by soman
Author: t. m. epstein, u. samanta, b. j. bahnson
Keywords: paf-ah ib, alpha-1 subunit, lis1, group viii phospholipase a2, 26 kda, soman, cytoplasm, hydrolase, lipid degradation, platelet factor
- 3dtq.pdb.
transport protein 15-jul-08 3dtq
Title: engineered human lipocalin 2 with specificity for y-dtpa, apo-form
Author: a. eichinger, a. skerra
Keywords: ligand binding protein, beta barrel, engineered lipocalin, de novo protein, protein binding, glycoprotein, pyrrolidone carboxylic acid, secreted, transport protein
- 3dvf.pdb.
protein fibril 18-jul-08 3dvf
Title: structure of amyloidogenic kappa 1 bence jones protein
Author: e. g. randles, j. r. thompson, m. ramirez-alvarado
Keywords: light chain amyloidosis, amyloid, immunoglobulin, light chain, light chain variable domain, protein fibril
- 3dvi.pdb.
protein fibril 18-jul-08 3dvi
Title: crystal structure of kappa 1 amyloidogenic light chain variable domain
Author: j. r. thompson, e. g. randles, m. ramirez-alvarado
Keywords: light chain amyloidosis, amyloid, immunoglobulin, light chain, light chain variable domain, protein fibril
- 3dvt.pdb.
motor protein 20-jul-08 3dvt
Title: biochemical and structural characterization of the pak1- lc8 interaction
Author: c. m. lightcap, j. c. williams
Keywords: lc8, light chain, pin, dlc1, dynll1, cytoplasm, microtubule, motor protein
- 3dwj.pdb.
oxidoreductase 22-jul-08 3dwj
Fe
Title: heme-proximal w188h mutant of inducible nitric oxide synthase
Author: j. tejero, a. biswas, z. -q. wang, m. m. haque, c. hemann, j. l. zweier, r. c. page, s. misra, d. j. stuehr
Keywords: oxidoreductase, heme, pterin, dimer, nos, calmodulin-binding, fad, fmn, iron, metal- binding, nadp, polymorphism, zinc
- 3dxf.pdb.
nadph-binding protein 24-jul-08 3dxf
Title: crystal structure of the hscarg r37a mutant
Author: y. li, g. meng, x. dai, m. luo, x. zheng
Keywords: nadph-binding protein
- 3e0i.pdb.
transferase 31-jul-08 3e0i
Cu
Title: cu2+ substituted aquifex aeolicus kdo8ps in complex with pep
Author: d. l. gatti
Keywords: kdo8ps, copper, pep, metal geometry, cytoplasm, lipopolysaccharide biosynthesis, transferase
- 3e12.pdb.
transferase 01-aug-08 3e12
Cu
Title: cu2+ substituted aquifex aeolicus kdo8ps in complex with kdo8p
Author: d. l. gatti
Keywords: kdo8ps, copper, pep, metal geometry, cytoplasm, lipopolysaccharide biosynthesis, transferase
- 3e1i.pdb.
blood clotting 04-aug-08 3e1i
Ca
Title: crystal structure of bbetad432a variant fibrinogen fragment d with the peptide ligand gly-his-arg-pro-amide
Author: s. r. bowley, s. t. lord
Keywords: alternative splicing, coiled coil, disease mutation, glycoprotein, phosphoprotein, polymorphism, secreted, pyrrolidone carboxylic acid, calcium, sulfation, blood clotting
- 3e2c.pdb.
oxidoreductase 05-aug-08 3e2c
Zn Fe
Title: escherichia coli bacterioferritin mutant e128r/e135r
Author: s. g. wong, s. a. l. tom-yew, a. lewin, n. e. le brun, g. r. moore, m. e. p. murphy, a. g. mauk
Keywords: iron storage, metal-binding, heme, iron, oxidoreductase
- 3e46.pdb.
ligase 09-aug-08 3e46
Ca
Title: crystal structure of ubiquitin-conjugating enzyme e2-25kda (huntington interacting protein 2) m172a mutant
Author: r. c. hughes, r. c. wilson, j. w. flatt, e. j. meehan, j. d. ng, p. d. twigg
Keywords: huntington interacting, e2-25k, ligase, alternative splicing, cytoplasm, ubl conjugation, ubl conjugation pathway
- 3e5m.pdb.
oxidoreductase 14-aug-08 3e5m
Title: crystal structure of the hscarg y81a mutant
Author: y. li, g. meng, x. dai, m. luo, x. zheng
Keywords: oxidoreductase, polymorphism
- 3e8a.pdb.
lyase/lyase inhibitor 19-aug-08 3e8a
Cl Mg Ca
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with adenosine 5-o-(l- thiophosphate) and low ca concentration
Author: t. -c. mou, s. r. sprang
Keywords: nucleotide-binding, palmitate, transducer, lyase/lyase inhibitor complex
- 3ehm.pdb.
sugar binding protein 13-sep-08 3ehm
Se
Title: structure of bt1043
Author: n. m. koropatkin, t. j. smith
Keywords: glycan binding, mucin o-glycan binding, tetratrico-peptide repeat, sugar binding protein
- 3ehn.pdb.
sugar binding protein 13-sep-08 3ehn
Title: bt1043 with n-acetyllactosamine
Author: t. j. smith, n. m. koropatkin
Keywords: glycan-binding, mucin o-glycan, tetratrico- peptide repeat, sugar binding protein
- 3eni.pdb.
photosynthesis 25-sep-08 3eni
Mg
Title: crystal structure of the fenna-matthews-olson protein from chlorobaculum tepidum
Author: d. tronrud, a. camara-artigas, r. blankenship, j. p. allen
Keywords: gamma turn, bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, reaction center, transport
- 3enm.pdb.
transferase 25-sep-08 3enm
Se
Title: the structure of the map2k mek6 reveals an autoinhibitory dimer
Author: x. min, r. akella, h. he, j. m. humphreys, s. tsutakawa, s. -j. lee, j. a. tainer, m. h. cobb, e. j. goldsmith
Keywords: autoinhibited dimer, acetylation, alternative splicing, atp-binding, kinase, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase, transferase, tyrosine-protein kinase
- 3eoj.pdb.
photosynthesis 27-sep-08 3eoj
Mg Na
Title: fmo protein from prosthecochloris aestuarii 2k at 1.3a resolution
Author: d. e. tronrud, j. wen, l. gay, r. e. blankenship
Keywords: beta sheet, gamma-turns, bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, reaction center, transport
- 3eqx.pdb.
transcription regulator 01-oct-08 3eqx
Se
Title: crystal structure of the fic (filamentation induced by camp) family protein so4266 (np_719793.1) from shewanella oneidensis mr-1 at 1.6 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, fic protein family, transcription regulator
- 3esf.pdb.
oxidoreductase 05-oct-08 3esf
Fe
Title: crystal structure of the enzyme fe-superoxide dismutase tbsodb2 from trypanosoma brucei
Author: j. f. r. bachega, m. v. a. s. navarro, r. c. garratt
Keywords: oxidoreductase
- 3ey7.pdb.
oxidoreductase 20-oct-08 3ey7
Ca Se
Title: structure from the mobile metagenome of v. cholerae. integron cassette protein vch_cass1
Author: s. j. harrop, c. n. deshpande, v. sureshan, y. boucher, x. xu, h. cui, c. chang, a. edwards, a. joachimiak, a. savchenko, p. m. g. curmi, b. c. mabbutt, midwest center for structural genomics (mcsg)
Keywords: dioxygenase, oxidoreductase, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 3ey8.pdb.
oxidoreductase 20-oct-08 3ey8
Se
Title: structure from the mobile metagenome of v. pseudocholerae. vpc_cass1
Author: s. j. harrop, c. n. deshpande, v. sureshan, y. boucher, x. xu, h. cui, c. chang, a. edwards, a. joachimiak, a. savchenko, p. m. g. curmi, b. c. mabbutt, midwest center for structural genomics (mcsg)
Keywords: dioxygenase, oxidoreductase, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 3ey9.pdb.
oxidoreductase 20-oct-08 3ey9
Mg
Title: structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from escherichia coli
Author: p. neumann, a. weidner, a. pech, m. t. stubbs, k. tittmann
Keywords: membrane-associated flavoprotein dehydrogenase, interactions with lipids, cell membrane, fad, flavoprotein, lipid-binding, magnesium, membrane, oxidoreductase, thiamine pyrophosphate
- 3eys.pdb.
immune system 21-oct-08 3eys
Title: pfa1 fab fragment complexed with pyro-glu3-a-beta (3-8)
Author: a. s. gardberg, c. g. dealwis
Keywords: amyloid, alzheimer's, protein-peptide complex, immune system
- 3eyu.pdb.
immune system 21-oct-08 3eyu
Title: pfa1 fab fragment complexed with ror2(518-525)
Author: a. s. gardberg, c. g. dealwis
Keywords: amyloid, alzheimer's, protein-peptide complex, immune system
- 3f3t.pdb.
transferase 31-oct-08 3f3t
Title: kinase domain of csrc in complex with inhibitor rl38 (type iii)
Author: c. gruetter, s. klueter, m. getlik, d. rauh
Keywords: type iii, dfg-out, alternative splicing, atp- binding, kinase, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
- 3f3u.pdb.
transferase 31-oct-08 3f3u
Title: kinase domain of csrc in complex with inhibitor rl37 (type iii)
Author: c. gruetter, s. klueter, m. getlik, d. rauh
Keywords: type iii, dfg-out, alternative splicing, atp- binding, kinase, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
- 3f92.pdb.
ligase 13-nov-08 3f92
Ca
Title: crystal structure of ubiquitin-conjugating enzyme e2-25kda (huntington interacting protein 2) m172a mutant crystallized at ph 8.5
Author: r. c. wilson, r. c. hughes, j. w. flatt, e. j. meehan, j. d. ng, p. d. twigg
Keywords: cytoplasm, ubl conjugation, ubl conjugation pathway
- 3fbn.pdb.
transcription 19-nov-08 3fbn
Title: structure of the mediator submodule med7n/31
Author: t. koschubs, m. seizl, l. lariviere, f. kurth, s. baumli, d. e. martin, p. cramer
Keywords: right-handed four-helix bundle, protein-protein complex, nucleus, transcription, transcription regulation, activator
- 3fc2.pdb.
transferase 21-nov-08 3fc2
Zn
Title: plk1 in complex with bi6727
Author: g. bader
Keywords: atp-binding, cell cycle, cell division, kinase, mitosis, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3fcx.pdb.
hydrolase 24-nov-08 3fcx
Mg Ca
Title: crystal structure of human esterase d
Author: d. wu, y. li, g. song, d. zhang, n. shaw, z. j. liu
Keywords: genetic marker, esterase, hydrolase, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase
- 3fns.pdb.
hydrolase 26-dec-08 3fns
Zn
Title: crystal structure of histo-aspartic protease (hap) from plasmodium falciparum
Author: p. bhaumik, a. gustchina, a. wlodawer
Keywords: hap, plasmepsin, aspartic protease, hormone, hydrolase
- 3fnt.pdb.
hydrolase/hydrolase inhibitor 26-dec-08 3fnt
Title: crystal structure of pepstatin a bound histo-aspartic protease (hap) from plasmodium falciparum
Author: p. bhaumik, a. gustchina, a. wlodawer
Keywords: hap, plasmepsin, pepstatin a, aspartic protease, hydrolase/hydrolase inhibitor complex
- 3fnu.pdb.
hydrolase/hydrolase inhibitor 26-dec-08 3fnu
Title: crystal structure of kni-10006 bound histo-aspartic protease (hap) from plasmodium falciparum
Author: p. bhaumik, a. gustchina, a. wlodawer
Keywords: hap, plasmepsin, aspartic protease, kni, kni-10006, hydrolase/hydrolase inhibitor complex
- 3fot.pdb.
transferase 01-jan-09 3fot
Title: structural and functional characterization of tri3 trichothecene 15-o-acetyltransferase from fusarium sporotrichioides
Author: g. s. garvey, i. rayment, s. p. mccormick, n. j. alexander
Keywords: trichothecene mycotoxin, deoxynivalenol, t-2 toxin, fusarium graminearum, fusarium sporotrichioides, acetyltransferase, coenzyme a, bahd superfamily, transferase
- 3fpm.pdb.
transferase 05-jan-09 3fpm
Title: crystal structure of a squarate inhibitor bound to mapkap kinase-2
Author: k. d. parris
Keywords: atp-binding, alternative splicing, kinase, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3fug.pdb.
transcription/transcription regulator 14-jan-09 3fug
Title: crystal structure of the retinoid x receptor ligand binding domain bound to the synthetic agonist 3-[4-hydroxy-3-(3,5, 5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)- phenyl]acrylic acid
Author: w. bourguet
Keywords: phosphoprotein, transcription/transcription regulator complex
- 3fw6.pdb.
hydrolase 17-jan-09 3fw6
Zn
Title: crystal structure of celm2, a bifunctional glucanase- xylanase protein from a metagenome library
Author: k. y. hwang, k. h. nam
Keywords: glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase
- 3fxi.pdb.
immune system 21-jan-09 3fxi
Mg
Title: crystal structure of the human tlr4-human md-2-e.coli lps ra complex
Author: b. s. park, d. h. song, h. m. kim, j. -o. lee
Keywords: alternative splicing, glycoprotein, immune response, inflammatory response, innate immunity, membrane, polymorphism, receptor, transmembrane, secreted, immune system
- 3fys.pdb.
fatty acid-binding protein 23-jan-09 3fys
Br
Title: crystal structure of degv, a fatty acid binding protein from bacillus subtilis
Author: j. nan, y. f. zhou, c. yang
Keywords: edd fold, fatty acid-binding protein
- 3fzy.pdb.
toxin 26-jan-09 3fzy
Cl
Title: crystal structure of pre-cleavage form of cysteine protease domain from vibrio cholerae rtxa toxin
Author: l. shuvalova, g. minasov, k. prochazkova, k. j. f. satchell, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: cpd, cysteine protease domain, pre-cleavage form, idp00167, structural genomics, center for structural genomics of infectious diseases, csgid
- 3fzz.pdb.
hydrolase 27-jan-09 3fzz
Title: structure of grc
Author: a. m. buckle, d. kaiserman, j. c. whisstock
Keywords: cytolysis, protease, serine protease, zymogen
- 3g01.pdb.
hydrolase 27-jan-09 3g01
Title: structure of grc mutant e192r/e193g
Author: a. m. buckle, d. kaiserman, j. c. whisstock
Keywords: cytolysis, protease, serine protease, zymogen
- 3g5n.pdb.
oxidoreductase 05-feb-09 3g5n
Fe
Title: triple ligand occupancy crystal structure of cytochrome p450 2b4 in complex with the inhibitor 1-biphenyl-4-methyl- 1h-imidazole
Author: s. c. gay, l. sun, k. maekawa, j. r. halpert, c. d. stout
Keywords: cytochrome p450 2b4, monooxygenase, oxidoreductase, membrane protein, cyp 2b4, cyp lm2, endoplasmic reticulum, heme, iron, membrane, metal-binding, microsome, phosphoprotein, polymorphism
- 3g5p.pdb.
hydrolase 05-feb-09 3g5p
Co
Title: structure and activity of human mitochondrial peptide deformylase, a novel cancer target
Author: s. escobar-alvarez, y. goldgur, g. yang, o. ouerfelli, y. li, d. a. scheinberg
Keywords: human, mitochondria, hydrolase, iron, metal-binding, mitochondrion, protein biosynthesis, transit peptide
- 3g6v.pdb.
replication/dna 09-feb-09 3g6v
Mg
Title: dna synthesis across an abasic lesion by human dna polymerase-iota
Author: d. t. nair, a. k. aggarwal
Keywords: nucleotidyltransferase, nucleus, polymorphism, schiff base, transferase, replication/dna complex
- 3g6x.pdb.
replication/dna 09-feb-09 3g6x
Mg
Title: ternary complex of dna polymerase iota:dna:dgtp with an abasic site at the templating position
Author: d. t. nair, a. k. aggarwal
Keywords: nucleotidyltransferase, nucleus, polymorphism, schiff base, transferase, replication/dna complex
- 3g6y.pdb.
replication/dna 09-feb-09 3g6y
Mg
Title: ternary complex of dna polymerase iota:dna:dttp with an abasic site at the templating position
Author: d. t. nair, a. k. aggarwal
Keywords: nucleotidyltransferase, nucleus, polymorphism, schiff base, transferase, replication/dna complex
- 3g76.pdb.
ligase 09-feb-09 3g76
Zn
Title: crystal structure of xiap-bir3 in complex with a bivalent compound
Author: f. cossu, m. milani, e. mastrangelo, m. bolognesi
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 3g7c.pdb.
cell adhesion 09-feb-09 3g7c
Title: structure of the phosphorylation mimetic of occludin c-term tail
Author: b. r. tash, j. m. sundstrom, t. murakami, j. m. flanagan, m. c. bewley, d. a. antonetii
Keywords: diabetic retinopathy, zo-1, tight junction, adhesion, cell junction, coiled coil, membrane, phosphoprotein, transmembrane, cell adhesion
- 3g93.pdb.
oxidoreductase 12-feb-09 3g93
Fe
Title: single ligand occupancy crystal structure of cytochrome p450 2b4 in complex with the inhibitor 1-biphenyl-4-methyl- 1h-imidazole
Author: s. c. gay, l. sun, k. maekawa, j. r. halpert, c. d. stout
Keywords: cytochrome p450 2b4, monooxygenase, oxidoreductase, membrane protein, cyp 2b4, cyp lm2, endoplasmic reticulum, heme, iron, membrane, metal-binding, microsome, phosphoprotein, polymorphism
- 3g9r.pdb.
viral protein 13-feb-09 3g9r
Title: structure of the hiv-1 gp41 membrane-proximal ectodomain region in a putative prefusion conformation
Author: j. liu, m. lu
Keywords: mper, hiv-1, membrane fusion, aids, apoptosis, cell membrane, coiled coil, envelope protein, fusion protein, host-virus interaction, viral protein
- 3g9y.pdb.
transcription/rna 15-feb-09 3g9y
Zn
Title: crystal structure of the second zinc finger from zranb2/znf265 bound to 6 nt ssrna sequence agguaa
Author: f. e. loughlin, a. p. mcgrath, m. lee, j. m. guss, j. p. mackay
Keywords: zranb2, znf265, rna, protein-rna complex, , transcription/rna complex
- 3gb5.pdb.
oxidoreductase 18-feb-09 3gb5
Title: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound to fmn
Author: s. r. thomas, p. m. mctamney, j. m. adler, n. laronde-leblanc, s. e. rokita
Keywords: iodide salvage, flavoprotein, fmn, membrane, nadp, oxidoreductase, transmembrane
- 3gd8.pdb.
membrane protein 23-feb-09 3gd8
Title: crystal structure of human aquaporin 4 at 1.8 and its mechanism of conductance
Author: j. d. ho, r. yeh, a. sandstrom, i. chorny, w. e. c. harries, r. a. robbins, l. j. w. miercke, r. m. stroud, center for structures of membrane proteins (csmp)
Keywords: transmembrane, transport
- 3gfd.pdb.
oxidoreductase 26-feb-09 3gfd
I
Title: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound to fmn and mono-iodotyrosine (mit)
Author: s. r. thomas, p. m. mctamney, j. m. adler, n. laronde-leblanc, s. e. rokita
Keywords: iodide salvage, flavoprotein, mono-iodotyrosine, mit, fmn, membrane, nadp, oxidoreductase, transmembrane
- 3gfv.pdb.
transport protein 27-feb-09 3gfv
Se
Title: crystal structure of petrobactin-binding protein yclq from bacillu subtilis
Author: y. kim, n. maltseva, a. zawadzka, k. raymond, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transport protein
- 3ggm.pdb.
structural genomics, unknown function 28-feb-09 3ggm
Title: crystal structure of bt9727_2919 from bacillus thuringiensis subsp. northeast structural genomics target bur228b
Author: j. seetharaman, h. neely, h. wang, h. janjua, e. l. foote, r. xiao, j. k. everett, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
- 3ggw.pdb.
immune system 02-mar-09 3ggw
Title: crystal structure of fab f22-4 in complex with a carbohydrate-mimetic peptide
Author: f. a. saul, b. vulliez-le normand, g. a. bentley
Keywords: lps, shigella flexneri, antibody complex, immune system
- 3gh8.pdb.
oxidoreductase 03-mar-09 3gh8
I
Title: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound to fmn and di-iodotyrosine (dit)
Author: s. r. thomas, p. m. mctamney, j. m. adler, n. laronde-leblanc, s. e. rokita
Keywords: iodide salvage, flavoprotein, di-iodotyrosine, dit, fmn, membrane, nadp, oxidoreductase, transmembrane
- 3glv.pdb.
biosynthetic protein 12-mar-09 3glv
Title: crystal structure of the lipopolysaccharide core biosynthesis protein from thermoplasma volcanium gss1
Author: r. zhang, a. sather, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, biosynthetic protein
- 3gmi.pdb.
structural genomics, unknown function 13-mar-09 3gmi
Title: crystal structure of a protein of unknown function from methanocaldococcus jannaschii
Author: r. zhang, c. hatzos, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, unknown function
- 3gnj.pdb.
structural genomics, unknown function 17-mar-09 3gnj
Se
Title: the crystal structure of a thioredoxin-related protein from desulfitobacterium hafniense dcb
Author: k. tan, l. volkart, m. gu, j. n. kinney, g. babnigg, kerfeld, c. joachimiak, midwest center for structural genomics (mcsg)
Keywords: thioredoxin, desulfitobacterium hafniense dcb, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3gos.pdb.
transferase 19-mar-09 3gos
Mg
Title: the crystal structure of 2,3,4,5-tetrahydropyridine-2- carboxylate n-succinyltransferase from yersinia pestis co92
Author: r. zhang, n. maltseva, k. kwon, w. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: center for structural genomics of infectious diseases, csgid
- 3gs1.pdb.
rna 26-mar-09 3gs1
Co
Title: an all-rna hairpin ribozyme with mutation a38n1da
Author: r. c. spitale, r. volpini, m. g. heller, j. krucinska, g. cristalli, j. e. wedekind
Keywords: ribozyme, hairpin ribozyme, n1-deazaadenosine
- 3gs5.pdb.
rna 26-mar-09 3gs5
Co
Title: an all-rna hairpin ribozyme a38n1da variant with a product mimic substrate strand
Author: r. c. spitale, r. volpini, m. g. heller, j. krucinska, g. cristalli, j. e. wedekind
Keywords: rna ribozyme, n1-deazaadenosine
- 3gs8.pdb.
rna 26-mar-09 3gs8
Co
Title: an all-rna hairpin ribozyme a38n1da38 variant with a transition-state mimic substrate strand
Author: r. c. spitale, r. volpini, m. g. heller, j. krucinska, g. cristalli, j. e. wedekind
Keywords: rna ribozyme, n1-deazaadenosine
- 3gvd.pdb.
transferase 30-mar-09 3gvd
Title: crystal structure of serine acetyltransferase cyse from yersinia pestis
Author: y. kim, m. zhou, s. peterson, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics of national institute of allergy and infectious diseases, acyltransferase, transferase, center for structural genomics of infectious diseases, csgid
- 3gwb.pdb.
hydrolase 31-mar-09 3gwb
Se
Title: crystal structure of peptidase m16 inactive domain from pseudomonas fluorescens. northeast structural genomics target plr293l
Author: j. seetharaman, y. chen, f. fang, r. xiao, j. k. everett, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: pfl_5859, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, hydrolase
- 3gwu.pdb.
transport protein 01-apr-09 3gwu
Cl Na
Title: leucine transporter leut in complex with sertraline
Author: z. zhou, j. zhen, n. k. karpowich, c. j. law, m. e. a. reith, d. n. wang
Keywords: transmembrane transport, integral membrane protein, antidepressant, nss, transport protein, symport, transmembrane, transport
- 3gwv.pdb.
transport protein 01-apr-09 3gwv
F Na
Title: leucine transporter leut in complex with r-fluoxetine
Author: z. zhou, j. zhen, n. k. karpowich, c. j. law, m. e. a. reith, d. n. wang
Keywords: transmembrane transport, integral membrane protein, antidepressant, nss, transport protein, symport, transmembrane, transport
- 3gww.pdb.
transport protein 01-apr-09 3gww
F Na
Title: leucine transporter leut in complex with s-fluoxetine
Author: z. zhou, j. zhen, n. k. karpowich, c. j. law, m. e. a. reith, d. n. wang
Keywords: transmembrane transport, integral membrane protein, antidepressant, nss, transport protein, symport, transmembrane, transport
- 3gyg.pdb.
hydrolase 03-apr-09 3gyg
Mg Se
Title: crystal structure of yhjk (haloacid dehalogenase-like hydrolase protein) from bacillus subtilis
Author: b. nocek, a. stein, r. wu, r. jedrzejczak, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: pf08282, mcsg, psi-2, haloacid dehalogenase-like hydrolase, structural genomics, protein structure initiative, midwest center for structural genomics, antibiotic biosynthesis, hydrolase
- 3gyv.pdb.
chaperone 06-apr-09 3gyv
I
Title: crystal structure of nucleosome assembly protein from plasmodium falciparum
Author: m. yogavel, j. gill, a. sharma
Keywords: nucleosome assembly protein, histone recognition,chaperone
- 3gyw.pdb.
chaperone 06-apr-09 3gyw
Title: crystal structure of nucleosome assembly protein from plasmodium falciparum at 2.4 a resolution
Author: m. yogavel, j. gill, a. sharma
Keywords: siras, nucleosome assembly protein, histone recognition, chaperone
- 3gzg.pdb.
metal binding protein 07-apr-09 3gzg
Mo
Title: crystal structure of the xanthomonas axonopodis pv. citri molybdate-binding protein (moda) mutant (k127s)
Author: c. santacruz-perez, v. r. pegos, a. balan, j. a. r. g. barbosa
Keywords: mutant k127s, metal binding protein
- 3h05.pdb.
structural genomics, unknown function 08-apr-09 3h05
Cl
Title: the crystal structure of a putative nicotinate-nucleotide adenylyltransferase from vibrio parahaemolyticus
Author: a. j. stein, m. e. cuff, a. sather, g. shackelford, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transferase, mcsg, midwest center for structural genomics, psi, protein structure initiative, structural genomics, unknown function
- 3h08.pdb.
hydrolase 08-apr-09 3h08
Mg
Title: crystal structure of the ribonuclease h1 from chlorobium tepidum
Author: k. ratcliff, j. corn, s. marqusee
Keywords: 3d-structure, endonuclease, hydrolase, magnesium, metal-binding, nuclease
- 3h30.pdb.
transferase 15-apr-09 3h30
Cl
Title: crystal structure of the catalytic subunit of human protein kinase ck2 with 5,6-dichloro-1-beta-d- ribofuranosylbenzimidazole
Author: k. niefind, j. raaf, o. -g. issinger
Keywords: casein kinase 2, casein kinase ii, atp- binding, kinase, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase, transferase, wnt signaling pathway
- 3h35.pdb.
structural genomics, unknown function 15-apr-09 3h35
Se
Title: structure of the uncharacterized protein abo_0056 from the hydrocarbon-degrading marine bacterium alcanivorax borkumensis sk2.
Author: m. e. cuff, e. evdokimova, o. kagan, a. edwards, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: ubiquitous hydrocarbon degrading bacterium, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3h36.pdb.
transferase 15-apr-09 3h36
Ca Se
Title: structure of an uncharacterized domain in polyribonucleotide nucleotidyltransferase from streptococcus mutans ua159
Author: m. e. cuff, c. hatzos, r. jedrzejczak, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transferase
- 3h5z.pdb.
transferase 22-apr-09 3h5z
Title: crystal structure of leishmania major n- myristoyltransferase with bound myristoyl-coa
Author: w. qiu, a. hutchinson, y. -h. lin, a. wernimont, f. mackenzie, m. ravichandran, d. cossar, y. zhao, m. schapira, c. h. arrowsmith, c. bountra, j. weigelt, a. m. edwards, m. a. j. ferguson, a. h. fairlamb, r. hui, structural genomics consortium (sgc)
Keywords: n-myristoyltransferase, nmt, leishmania major, structural genomics, structural genomics consortium, sgc, acyltransferase
- 3h6j.pdb.
hydrolase 23-apr-09 3h6j
Title: crystal structure of a putative neuraminidase from pseudomonas aeruginosa
Author: y. -s. hsiao, l. tong
Keywords: cell wall, glycosidase, hydrolase, peptidoglycan-anchor, secreted
- 3h71.pdb.
hydrolase 24-apr-09 3h71
Se
Title: crystal structure of streptococcus pneumoniae d39 neuraminidase a precursor (nana)
Author: y. -s. hsiao, l. tong
Keywords: cell wall, glycosidase, hydrolase, peptidoglycan-anchor, secreted
- 3h72.pdb.
hydrolase 24-apr-09 3h72
Title: crystal structure of streptococcus pneumoniae d39 neuraminidase a precursor (nana) in complex with nana
Author: y. -s. hsiao, l. tong
Keywords: cell wall, glycosidase, hydrolase, peptidoglycan-anchor, secreted
- 3h73.pdb.
hydrolase 24-apr-09 3h73
Title: crystal structure of streptococcus pneumoniae d39 neuraminidase a precursor (nana) in complex with dana
Author: y. -s. hsiao, l. tong
Keywords: cell wall, glycosidase, hydrolase, peptidoglycan-anchor, secreted
- 3h75.pdb.
sugar binding protein 24-apr-09 3h75
Se
Title: crystal structure of a periplasmic sugar-binding protein from the pseudomonas fluorescens
Author: d. kumaran, a. mahmood, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: sugar binding protein, alpha/beta fold, two domain architecture, 11233i, nysgxrc, structural genomics, new york sgx research center for structural genomics
- 3h79.pdb.
unknown function 24-apr-09 3h79
Title: crystal structure of trypanosoma cruzi thioredoxin-like hypothetical protein q4dv70
Author: c. r. santos, m. r. fessel, l. c. vieira, m. a. krieger, s. goldenberg, b. g. guimaraes, n. i. t. zanchin, j. a. r. g. barbosa
Keywords: catalytic cysteines missing, unknown function
- 3h7l.pdb.
hydrolase 27-apr-09 3h7l
Title: crystal structure of endoglucanase-related protein from vibrio parahaemolyticus
Author: y. patskovsky, r. toro, c. morano, m. rutter, s. chang, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: dehydrogenase, psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics, hydrolase
- 3h7o.pdb.
hydrolase 28-apr-09 3h7o
Title: crystal structure of scabies mite inactivated protease paralogue s-i1 (smipp-s-i1)
Author: a. m. buckle
- 3h7t.pdb.
hydrolase 28-apr-09 3h7t
Zn
Title: crystal structure of scabies mite inactivated protease paralogue s-d1 (smipp-s-d1)
Author: a. m. buckle
- 3h7v.pdb.
lyase 28-apr-09 3h7v
Mg Se
Title: crystal structure of o-succinylbenzoate synthase from thermosynechococcus elongatus bp-1 complexed with mg in the active site
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: nysgxrc, target 9306e, o- succinylbenzoate synthase, enolase sequence signature, psi- 2, protein structure initiative, new york sgx research center for structural genomics, lyase
- 3h81.pdb.
lyase 28-apr-09 3h81
Ca
Title: crystal structure of enoyl-coa hydratase from mycobacterium tuberculosis
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: decode, infectious disease, mpcs, fatty acid metabolism, lipid metabolism, lyase, structural genomics, seattle structural genomics center for infectious disease, ssgcid
- 3h83.pdb.
transferase 28-apr-09 3h83
Title: 2.06 angstrom resolution structure of a hypoxanthine- guanine phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames ancestor'
Author: a. s. halavaty, l. shuvalova, g. minasov, i. dubrovska, s. n. peterson, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics, infectious diseases, center for structural genomics of infectious diseases, glycosyltransferase, transferase, csgid
- 3h8q.pdb.
oxidoreductase 29-apr-09 3h8q
Cl
Title: crystal structure of glutaredoxin domain of human thioredoxin reductase 3
Author: a. chaikuad, c. johansson, e. ugochukwu, a. k. roos, f. von delft, e. pilka, w. yue, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, u. oppermann, structural genomics consortium (sgc)
Keywords: nadp, nucleus, phosphoprotein, redox-active center, selenium, selenocysteine, spermatogenesis, transport
- 3h8t.pdb.
heme-binding protein 29-apr-09 3h8t
Fe
Title: structure of porphyromonas gingivalis heme-binding protein hmuy in complex with heme
Author: h. wojtowicz, t. guevara, c. tallant, m. olczak, a. sroka, j. potempa, m. sola, t. olczak, f. x. gomis-ruth
Keywords: bacterial virulence factor, heme-binding protein, periodontitis
- 3h8u.pdb.
structural genomics, unknown function 29-apr-09 3h8u
Se
Title: crystal structure of uncharacterized conserved protein with double-stranded beta-helix domain (yp_001338853.1) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: unknown function
- 3h92.pdb.
structural genomics, unknown function 29-apr-09 3h92
Se
Title: the crystal structure of one domain of the protein with unknown function from methanocaldococcus jannaschii
Author: r. zhang, c. hatzos, s. moy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, atp-binding, nucleotide-binding, plasmid, unknown function
- 3ha3.pdb.
transferase 01-may-09 3ha3
Title: crystal structure of hma (mmaa4) from mycobacterium tuberculosis complexed with s-adenosylhomocysteine
Author: f. boissier, j. vaubourgeix, s. julien, l. mourey
Keywords: methyltransferase, transferase
- 3ha5.pdb.
transferase 01-may-09 3ha5
Title: crystal structure of hma (mmaa4) from mycobacterium tuberculosis complexed with sinefungin
Author: f. boissier, j. vaubourgeix, s. julien, l. mourey
Keywords: methyltransferase, transferase
- 3ha7.pdb.
transferase 01-may-09 3ha7
Title: crystal structure of hma (mmaa4) from mycobacterium tuberculosis complexed with s-adenosyl-n-decyl-aminoethyl (sadae)
Author: j. vaubourgeix, f. boissier, s. julien, l. mourey
Keywords: methyltransferase, transferase
- 3hb6.pdb.
oxidoreductase 04-may-09 3hb6
Fe
Title: inactive mutant h54f of proteus mirabilis catalase
Author: p. andeoletti, h. m. jouve, p. gouet
Keywords: cytoplasm, heme, hydrogen peroxide, iron, metal-binding, nadp, oxidation, oxidoreductase, peroxidase
- 3iy0.pdb.
immune system 07-apr-09 3iy0
(electron microscopy)
Title: variable domains of the x-ray structure of fab 14 fitted into the cryoem reconstruction of the virus-fab 14 complex
Author: s. hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy1.pdb.
immune system 09-apr-09 3iy1
(electron microscopy)
Title: variable domains of the wam of fab b fitted into the cryoem reconstruction of the virus-fab b complex
Author: s. hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy2.pdb.
immune system 09-apr-09 3iy2
(electron microscopy)
Title: variable domains of the computer generated model (wam) of fab 6 fitted into the cryoem reconstruction of the virus- fab 6 complex
Author: s. hafenstein, v. d bowman, t. sun, c. d. nelson, l. m. palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy3.pdb.
immune system 09-apr-09 3iy3
(electron microscopy)
Title: variable domains of the computer generated model (wam) of fab 8 fitted into the cryoem reconstruction of the virus- fab 8 complex
Author: s. hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, p. r chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy4.pdb.
immune system 09-apr-09 3iy4
(electron microscopy)
Title: variable domains of the computer generated model (wam) of fab 15 fitted into the cryoem reconstruction of the virus- fab 15 complex
Author: s. hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy5.pdb.
immune system 09-apr-09 3iy5
(electron microscopy)
Title: variable domains of the mouse fab (1aif) fitted into the cryoem reconstruction of the virus-fab 16 complex
Author: s hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy6.pdb.
immune system 09-apr-09 3iy6
(electron microscopy)
Title: variable domains of the computer generated model (wam) of fab e fitted into the cryoem reconstruction of the virus- fab e complex
Author: s. hafenstein, v. d. bowman, t. sun, c. d nelson, l. m palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 3iy7.pdb.
immune system 09-apr-09 3iy7
(electron microscopy)
Title: variable domains of the computer generated model (wam) of fab f fitted into the cryoem reconstruction of the virus- fab f complex
Author: s hafenstein, v. d. bowman, t. sun, c. d. nelson, l. m. palermo, p. r. chipman, a. j. battisti, c. r. parrish, m. g. rossmann
Keywords: neutralizing antibody, parvovirus, canine, feline, fab footprint, immune system
- 5dnb.pdb.
dna 22-mar-90 5dnb
Mg
Title: structure of the b-dna decamer c-c-a-a-c-g-t-t-g-g and comparison with isomorphous decamers c-c-a-a-g-a-t-t-g-g and c-c-a-g-g-c-c-t-g-g
Author: g. g. prive, k. yanagi, r. e. dickerson
Keywords: double helix
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS