Recent PDB releases or updates: week of 1 May 2009
- 1b11.pdb.
hydrolase 25-nov-98 1b11
Title: structure of feline immunodeficiency virus protease complexed with tl-3-093
Author: a. gustchina, m. li, a. wlodawer
Keywords: inhibitor, hydrolase
- 1l1k.pdb.
protein binding 18-feb-02 1l1k
He Hg
(solution NMR)
Title: nmr identification and characterization of the flexible regions in the 160 kd molten globule-like aggregate of barstar at low ph
Author: j. juneja, n. s. bhavesh, j. b. udgaokar, r. v. hosur
Keywords: low ph, 160 kd, aggregate, nmr, protein binding
- 1lkk.pdb.
complex (tyrosine kinase/peptide) 10-nov-95 1lkk
He Hg
Title: human p56-lck tyrosine kinase sh2 domain in complex with the phosphotyrosyl peptide ac-ptyr-glu-glu-ile (pyeei peptide)
Author: l. tong
- 1lkl.pdb.
complex (tyrosine kinase/peptide) 10-nov-95 1lkl
Title: human p56-lck tyrosine kinase sh2 domain in complex with the phosphotyrosyl peptide ac-ptyr-glu-glu-gly (pyeeg peptide)
Author: l. tong
- 1n91.pdb.
structural genomics/unknown function 21-nov-02 1n91
He Hg
(solution NMR)
Title: solution nmr structure of protein yggu from escherichia coli. northeast structural genomics consortium target er14.
Author: j. m. aramini, r. xiao, y. j. huang, t. b. acton, m. j. wu, j. l. mills, r. t. tejero, t. szyperski, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: psi, protein structure initiative, nesg, structural genomics/unknown function complex
- 1o3h.pdb.
hydrolase 06-mar-03 1o3h
He Cl Hg Br Ca
Title: elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors
Author: b. a. katz, k. elrod, e. verner, r. l. mackman, c. luong, w. d. shrader, m. sendzik, j. r. spencer, p. a. sprengeler, a. kolesnikov, v. w. tai, h. c. hui, j. g. breitenbucher, d. allen, j. w. janc
Keywords: short hydrogen bond, inhibition mechanism, shift of pka, trypsin, thrombin, urokinase, factor xa, hydrolase
- 1p9z.pdb.
antifungal protein 13-may-03 1p9z
He Hg
(solution NMR)
Title: the solution structure of antifungal peptide distinct with a five-disulfide motif from eucommia ulmoides oliver
Author: r. h. huang, y. xiang, g. z. tu, y. zhang, d. c. wang
Keywords: chitin-binding peptide, disulfide stabilized motif, antifungal protein
- 1s62.pdb.
protein transport 22-jan-04 1s62
He Hg
(solution NMR)
Title: solution structure of the escherichia coli tola c-terminal domain
Author: c. deprez, l. blanchard, j. -p. simorre, m. gavioli, f. guerlesquin, c. lazdunski, r. lloubes, d. marion
Keywords: protein transport
- 1soh.pdb.
lipid transport 14-mar-04 1soh
He Hg
(solution NMR)
Title: the structure of human apolipoprotein c-ii in dodecyl phosphocholine
Author: c. a. macraild, g. j. howlett, p. r. gooley
- 1tq5.pdb.
unknown function 16-jun-04 1tq5
Se Cd
Title: crystal structure of yhhw from escherichia coli
Author: m. adams, z. jia, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: pirin, montreal-kingston bacterial structural genomics initiative, bsgi, structural genomics, unknown function
- 1w78.pdb.
synthase 31-aug-04 1w78
Mg
Title: e.coli folc in complex with dhpp and adp
Author: m. mathieu, g. debousker, s. vincent, f. viviani, n. bamas-jacques, v. mikol
Keywords: dhfs, dihydrofolate synthase, synthase, atp-binding, folate biosynthesis, ligase, multifunctional enzyme
- 1w7k.pdb.
synthase 06-sep-04 1w7k
Mg
Title: e.coli folc in complex with adp, without folate substrate
Author: m. mathieu, g. debousker, s. vincent, f. viviani, n. bamas-jacques, v. mikol
Keywords: dhfs, dihydrofolate synthase, synthase, atp-binding, folate biosynthesis, ligase, multifunctional enzyme
- 1wli.pdb.
electron transport 28-jun-04 1wli
Title: l122y mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Author: n. shibata, y. higuchi
Keywords: flavoprotein, fmn
- 1wlk.pdb.
electron transport 28-jun-04 1wlk
Title: l122e mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Author: n. shibata, y. higuchi
Keywords: flavoprotein, fmn
- 1wll.pdb.
electron transport 28-jun-04 1wll
Title: l122k mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Author: n. shibata, y. higuchi
Keywords: flavoprotein, fmn
- 1xz9.pdb.
cell adhesion 12-nov-04 1xz9
He Hg
(solution NMR)
Title: structure of af-6 pdz domain
Author: m. joshi, p. boisguerin, d. leitner, r. volkmer-engert, k. moelling, m. schade, p. schmieder, g. krause, h. oschkinat
Keywords: pdz, af-6, cell adhesion
- 1z6c.pdb.
blood clotting 22-mar-05 1z6c
He Hg Ca
(solution NMR)
Title: solution structure of an egf pair (egf34) from vitamin k- dependent protein s
Author: t. drakenberg, h. ghasriani, e. thulin, a. m. thamlitz, a. muranyi, a. annila, j. stenflo
Keywords: blood clotting
- 1zel.pdb.
structural genomics, unknown function 19-apr-05 1zel
Na
Title: crystal structure of rv2827c protein from mycobacterium tuberculosis
Author: r. janowski, s. panjikar, j. mueller-dieckmann, m. s. weiss, tb structural genomics consortium (tbsgc)
Keywords: hypothetical protein, winged-helix, helix-turn- helix, auto-rickshaw, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc, unknown function
- 1zua.pdb.
oxidoreductase 30-may-05 1zua
F
Title: crystal structure of akr1b10 complexed with nadp+ and tolrestat
Author: o. gallego, j. farres, x. pares, i. fita
Keywords: aldo-keto reductase, oxidoreductase
- 1zuq.pdb.
oxidoreductase 31-may-05 1zuq
Mn
Title: contribution to structure and catalysis of tyrosine 34 in human manganese superoxide dismutase
Author: a. s. hearn, j. j. perry, d. e. cabelii, j. a. tainer, h. s. nick, d. s. silverman
Keywords: manganese superoxide dismutase, y34v mutation, oxidoreductase
- 2azh.pdb.
structural genomics, unknown function 10-sep-05 2azh
He Hg Zn
(solution NMR)
Title: solution structure of iron-sulfur cluster assembly protein sufu from bacillus subtilis, with zinc bound at the active site. northeast structural genomics consortium target sr17
Author: g. j. kornhaber, g. v. t. swapna, t. a. ramelot, j. r. cort, j. m. aramini, m. a. kennedy, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: nmr, autostructure, iron-sulfur, zinc, iscu, sufu, nifu-like, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
- 2c9e.pdb.
photosynthesis 09-dec-05 2c9e
Mg
Title: peridinin-chlorophyll a protein, high-salt form
Author: t. schulte, f. p. sharples, r. g. hiller, e. hofmann
Keywords: carotenoids, chloroplast, dinoflagellates, light harvesting protein, light-harvesting polypeptide, multigene family, transit peptide
- 2d1f.pdb.
lyase 20-aug-05 2d1f
Title: structure of mycobacterium tuberculosis threonine synthase
Author: a. s. covarrubias, t. bergfors, k. mannerstedt, s. oscarson, t. a. jones, s. l. mowbray, m. hogbom
Keywords: pyridoxal-5'-phosphate, plp, lyase
- 2e4l.pdb.
hydrolase 13-dec-06 2e4l
Title: thermodynamic and structural analysis of thermolabile rnase hi from shewanella oneidensis mr-1
Author: t. tadokoro, d. j. you, h. chon, h. matsumura, y. koga, k. takano, s. kanaya
Keywords: endoribonuclease, rnase hi, shewanella oneidensis mr-1
- 2fss.pdb.
oxidoreductase 23-jan-06 2fss
Title: candida boidinii formate dehydrogenase (fdh) k47e mutant
Author: k. schirwitz, a. schmidt, v. s. lamzin
Keywords: protein homo dimer, nad binding site, formate binding site, oxidoreductase
- 2ftd.pdb.
hydrolase 24-jan-06 2ftd
Title: crystal structure of cathepsin k complexed with 7-methyl- substituted azepan-3-one compound
Author: d. s. yamashita, z. baoguang
Keywords: sulfhydryl proteinase
- 2gfi.pdb.
hydrolase 22-mar-06 2gfi
Title: crystal structure of the phytase from d. castellii at 2.3 a
Author: f. hoh
Keywords: hydrolase
- 2gko.pdb.
hydrolase 03-apr-06 2gko
Na Ca
Title: s41 psychrophilic protease
Author: r. l. walter, m. j. mekel, r. a. grayling, f. h. arnold, p. l. wintrode, o. almog
Keywords: hydrolase
- 2gpm.pdb.
rna 18-apr-06 2gpm
Ca
Title: crystal structure of an rna racemate
Author: w. rypniewski, m. vallazza, m. perbandt, s. klussmann, c. betzel, v. a. erdmann
Keywords: racemate, rna
- 2gse.pdb.
hydrolase 26-apr-06 2gse
Ca
Title: crystal structure of human dihydropyrimidinease-like 2
Author: d. ogg, p. stenmark, c. arrowsmith, h. berglund, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, b. m. hallberg, m. hammarstrom, t. kotenyova, p. kursula, p. nilsson-ehle, t. nyman, c. persson, j. sagemark, m. sundstrom, l. holmberg-schiavone, a. g thorsell, j. uppenberg, s. van den berg, j. weigelt, p. nordlund, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc, dihydropyrimidinase-related protein 2, drp2, collapsin response mediator protein 2, crmp2, hydrolase
- 2gzm.pdb.
isomerase 11-may-06 2gzm
Title: crystal structure of the glutamate racemase from bacillus anthracis
Author: m. may, b. d. santarsiero, m. e. johnson, a. d. mesecar
Keywords: enzyme, glutamate, isomerase
- 2hjw.pdb.
ligase 02-jul-06 2hjw
Title: crystal structure of the bc domain of acc2
Author: y. s. cho, j. i. lee, d. shin, h. t. kim, t. g. lee, y. s. heo
Keywords: ligase
- 2hug.pdb.
plant protein 26-jul-06 2hug
He Hg
(solution NMR)
Title: 3d solution structure of the chromo-2 domain of cpsrp43 complexed with cpsrp54 peptide
Author: k. m. kathir, s. vaithiyalingam, r. henry, s. k. k. thallapuranam
Keywords: cpsrp43, lhcp, thylakoid, protein translocation, cpsrp54, plant protein
- 2i2p.pdb.
ribosome 16-aug-06 2i2p
Mg
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes, ribosome
- 2i2t.pdb.
ribosome 16-aug-06 2i2t
Mg Zn
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i2u.pdb.
ribosome 16-aug-06 2i2u
Mg
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i2v.pdb.
ribosome 16-aug-06 2i2v
Mg Zn
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2icv.pdb.
oxidoreductase 13-sep-06 2icv
Co Fe
Title: kinetic and crystallographic studies of a redesigned manganese-binding site in cytochrome c peroxidase
Author: t. pfister, a. y. mirarefi, a. j. gengenbach, x. zhao, c. d. n. conaster, y. g. gao, h. robinson, c. f. zukoski, a. h. j. wang, y. lu
Keywords: metal-binding site, protein engineering, metalloprotein, biomimetic, oxidoreductase
- 2ili.pdb.
lyase 02-oct-06 2ili
Zn
Title: refine atomic structure of human carbonic anhydrase ii
Author: s. z. fisher
Keywords: proton shuttle, carbonic anhydrase, lyase
- 2in4.pdb.
oxygen storage/transport 05-oct-06 2in4
Zn
Title: crystal structure of myoglobin with charge neutralized heme, zndmb-dme
Author: k. e. wheeler, j. m. nocek, d. a. cull, l. a. yatsunyk, a. c. rosenzweig, b. m. hoffman
Keywords: oxygen storage/transport complex
- 2jf5.pdb.
signaling protein 26-jan-07 2jf5
Cl Co Mg Cd
Title: crystal structure of lys63-linked di-ubiquitin
Author: d. komander, p. odenwaelder, d. barford
Keywords: lys63, nf-kb, ubiquitin, ubl conjugation, nuclear protein, signal transduction, signaling protein
- 2jk6.pdb.
oxidoreductase 21-aug-08 2jk6
Title: structure of trypanothione reductase from leishmania infantum
Author: p. baiocco, g. colotti, s. franceschini, a. ilari
Keywords: trypanothione metabolism, fad, leishmania, trypanosoma, antimonials, flavoprotein, oxidoreductase, redox-active center
- 2jlp.pdb.
oxidoreductase 14-sep-08 2jlp
Cu Zn
Title: crystal structure of human extracellular copper-zinc superoxide dismutase.
Author: s. v. antonyuk, r. w. strange, s. l. marklund, s. s. hasnain
Keywords: oxidoreductase, heparin binding, heparin-binding, oxidative stress, antioxidant, polymorphism, glycoprotein, metal-binding, zinc, cu-zn, copper, secreted, glycation
- 2jrj.pdb.
ligase 27-jun-07 2jrj
He Hg Zn
(solution NMR)
Title: solution structure of the human pirh2 ring-h2 domain. northeast structural genomics consortium target ht2b
Author: y. sheng, a. lemak, r. c. laister, b. wu, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: ring domain, structural genomics, protein structure initiative, psi-2, northeast structural genomics consortium, nesg
- 2jzb.pdb.
transferase/transcription 02-jan-08 2jzb
He Hg
(solution NMR)
Title: solution structure of the complex between e.coli nusa-ar2 and rnap-actd
Author: s. prasch, k. schweimer, p. roesch
Keywords: transcription termination, transferase/transcription complex
- 2k2c.pdb.
metal binding protein 31-mar-08 2k2c
He Hg Zn
(solution NMR)
Title: solution nmr structure of n-terminal domain of human pirh2. northeast structural genomics consortium (nesg) target ht2a
Author: b. wu, a. lemak, y. sheng, m. karra, s. srisailam, m. sunnerhagen, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: cytoplasm, metal-binding, nucleus, zinc-finger, metal binding protein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2k2d.pdb.
metal binding protein 31-mar-08 2k2d
He Hg Zn
(solution NMR)
Title: solution nmr structure of c-terminal domain of human pirh2. northeast structural genomics consortium (nesg) target ht2c
Author: a. lemak, y. sheng, m. karra, s. srisailam, r. c. laister, s. duan, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: cytoplasm, metal-binding, nucleus, zinc-finger, metal binding protein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2k4q.pdb.
viral protein 16-jun-08 2k4q
He Hg
(solution NMR)
Title: the solution structure of gpv, the major tail protein from bacteriophage lambda
Author: l. g. pell, v. kanelis, p. howell, a. r. davidson
Keywords: bacteriophage lambda, major tail protein, nmr, viral protein
- 2k77.pdb.
chaperone, protein binding 04-aug-08 2k77
He Hg
(solution NMR)
Title: nmr solution structure of the bacillus subtilis clpc n- domain
Author: d. j. kojetin, p. d. mclaughlin, r. j. thompson, m. rance, j. cavanagh
Keywords: n-domain, repeat, n-clpcr, chaperone/protease, competence, chaperone, protein binding
- 2k8p.pdb.
signaling protein 18-sep-08 2k8p
He Hg
(solution NMR)
Title: characterisation of the structural features and interactions of sclerostin: molecular insight into a key regulator of wnt-mediated bone formation
Author: v. veverka, a. j. henry, p. m. slocombe, a. ventom, b. mulloy, f. w. muskett, m. muzylak, k. greenslade, a. moore, l. zhang, j. gong, x. qian, c. paszty, r. j. taylor, m. k. robinson, m. d. carr
Keywords: bone formation, alternative splicing, glycoprotein, secreted, signaling protein
- 2k8x.pdb.
actin-binding protein 25-sep-08 2k8x
He Hg
(solution NMR)
Title: glytm1b(1-19)zip: a chimeric peptide model of the n- terminus of a rat short alpha-tropomyosin with the n- terminus encoded by exon 1b in complex with tm9d(252-284), a peptide model containing the c terminus of alpha- tropomyosin encoded by exon 9d
Author: n. j. greenfield, l. kotylanskaya, s. e. hitchcock-degregori
Keywords: n terminus, protein complex, c terminus, tropomodulin binding protein, overlap complex, coiled coil, cytoskeletal regulatory protein, actin-binding protein
- 2k8z.pdb.
dna 29-sep-08 2k8z
Ho
(solution NMR)
Title: dimeric solution structure of the dna loop d(tcgttgct)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2k90.pdb.
dna 29-sep-08 2k90
Ho
(solution NMR)
Title: dimeric solution structure of the dna loop d(tgcttcgt)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2k97.pdb.
dna 30-sep-08 2k97
(solution NMR)
Title: dimeric solution structure of the cyclic octamer d(pcgctccgt)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2kbl.pdb.
structural protein 02-dec-08 2kbl
He Hg
(solution NMR)
Title: nmr structure of a monomeric folding intermediate reveals the structural basis for rapid assembly of an evolutionary optimized trimerization module
Author: j. habazettl, a. reiner, t. kiefhaber
Keywords: monomer of foldon, fibritin, trimer, protein assembly, protein-protein interaction, electrostatic interaction, coiled coil, structural protein
- 2kbv.pdb.
membrane protein 09-dec-08 2kbv
He Hg
(solution NMR)
Title: structural and functional analysis of tm xi of the nhe1 isoform of the na+/h+ exchanger
Author: b. l. lee, x. li, y. liu, b. d. sykes, l. fliegel
Keywords: peptide, nhe1, micelle, alternative splicing, antiport, glycoprotein, ion transport, membrane, phosphoprotein, sodium, sodium transport, transport, membrane protein
- 2kft.pdb.
transcription/protein binding 27-feb-09 2kft
He Hg Zn
(solution NMR)
Title: nmr solution structure of the first phd finger domain of human autoimmune regulator (aire) in complex with histone h3(1-20cys) peptide
Author: s. chakravarty, l. zeng, m. zhou
Keywords: zinc-finger, chromosomal protein, nucleosome core, transcription/protein binding complex
- 2khq.pdb.
dna binding protein 10-apr-09 2khq
He Hg
(solution NMR)
Title: solution nmr structure of a phage integrase ssp1947 fragment 59-159 from staphylococcus saprophyticus, northeast structural genomics consortium target syr103b
Author: a. eletsky, j. l. mills, j. hua, r. l. belote, c. ciccosanti, m. jiang, r. nair, b. rost, t. b. acton, r. xiao, g. v. t. swapna, j. k. everett, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, dna binding protein
- 2kin.pdb.
motor protein 28-apr-97 2kin
Title: kinesin (monomeric) from rattus norvegicus
Author: s. sack, j. muller, f. kozielski, a. marx, m. thormahlen, v. biou, e. - m. mandelkow, s. t. brady, e. mandelkow
Keywords: cytoskeleton
- 2nnd.pdb.
transport protein 24-oct-06 2nnd
Cd
Title: the structural identification of the interaction site and functional state of rbp for its membrane receptor
Author: c. redondo, r. j. bingham, m. vouropoulou, s. w. homans, j. b. findlay
Keywords: transport protein
- 2nne.pdb.
transport protein 24-oct-06 2nne
Cd
Title: the structural identification of the interaction site and functional state of rbp for its membrane receptor
Author: c. redondo, r. j. bingham, m. vouropoulou, s. w. homans, j. b. findlay
Keywords: transport protein
- 2p4r.pdb.
ligase 13-mar-07 2p4r
Title: structural basis for a novel interaction between aip4 and beta-pix
Author: k. c. min
Keywords: ligase
- 2rot.pdb.
protein binding 10-apr-08 2rot
He Hg
(solution NMR)
Title: structure of chimeric variant of sh3 domain- shh
Author: n. p. kutyshenko, d. a. prokhorov, m. a. timchenko, y. a. kudrevatykh, l. v. gushchina, v. s. khristoforov, v. v. filimonov
Keywords: chimeric protein, alpha-spectrin, actin capping, actin- binding, calcium, calmodulin-binding, cytoplasm, cytoskeleton, phosphoprotein, sh3 domain, protein binding
- 2uuk.pdb.
blood clotting 03-mar-07 2uuk
Na Ca
Title: thrombin-hirugen-gw420128 ternary complex at 1.39a resolution
Author: h. u. ahmed, m. p. blakeley, m. cianci, d. w. j. cruickshank, j. a. hubbard, j. r. helliwell
Keywords: blood coagulation, protease inhibitor, non-covalent active site inhibitor
- 2vf7.pdb.
dna-binding protein 31-oct-07 2vf7
Mg Zn
Title: crystal structure of uvra2 from deinococcus radiodurans
Author: j. timmins, e. gordon, s. caria, g. leonard, m. s. kuo, v. monchois, s. mcsweeney
Keywords: abc protein dna-binding protein
- 2vf8.pdb.
dna-binding protein 31-oct-07 2vf8
Zn
Title: crystal structure of uvra2 from deinococcus radiodurans
Author: j. timmins, e. gordon, s. caria, g. leonard, m. s. kuo, v. monchois, s. mcsweeney
Keywords: zinc-binding domain, sos response, metal-binding, excision nuclease, zinc-finger, atp-binding, dna-binding, dna excision, zinc, cytoplasm, dna damage, dna repair, abc protein, dna-binding protein
- 2vm8.pdb.
signaling protein 24-jan-08 2vm8
Mg
Title: human crmp-2 crystallised in the presence of mg
Author: p. kursula
Keywords: phosphoprotein, differentiation, crmp, cytoplasm, tim barrel, polymorphism, axonal pathfinding, developmental protein, signaling protein
- 2vn5.pdb.
cell adhesion 31-jan-08 2vn5
Ca
Title: the clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner
Author: b. a. pinheiro, j. a. m. prates, m. r. proctor, h. j. gilbert, g. j. davies, v. a. money, c. martinez-fleites, e. a. bayer, c. m. g. a. fontes, h. p. fierobe
Keywords: polysaccharide degradation, cohesin, dockerin, hydrolase, cellulosome, glycosidase, cellulose degradation, cell adhesion
- 2vnc.pdb.
hydrolase 04-feb-08 2vnc
Title: crystal structure of glycogen debranching enzyme trex from sulfolobus solfataricus
Author: h. -n. song, s. -m. yoon, h. -j. cha, k. -h. park, e. -j. woo
Keywords: glycosidase, glycosyl hydrolase, glycogen debranching
- 2vpd.pdb.
gene regulation 27-feb-08 2vpd
Zn
Title: decoding of methylated histone h3 tail by the pygo-bcl9 wnt signaling complex
Author: m. fiedler, m. j. sanchez-barrena, m. nekrasov, j. mieszczanek, v. rybin, j. muller, p. evans, m. bienz
Keywords: zinc-finger, metal-binding
- 2vsm.pdb.
hydrolase 25-apr-08 2vsm
Title: nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinb2
Author: t. a. bowden, a. r. aricescu, r. j. gilbert, j. m. grimes, e. y. jones, d. i. stuart
Keywords: niv-g, phosphoprotein, differentiation, viral attachment, signal-anchor, hemagglutinin, transmembrane
- 2w08.pdb.
glycoprotein 12-aug-08 2w08
Ca
Title: the structure of serum amyloid p component bound to 0- phospho-threonine
Author: s. e. kolstoe, m. b. pepys, s. p. wood
Keywords: polymorphism, metal-binding, tau, lectin, calcium, amyloid, secreted, alzheimers
- 2w0h.pdb.
oxidoreductase 18-aug-08 2w0h
Sb
Title: x ray strycture of leishmania infantum trypanothione reductase in complex with antimony and nadph
Author: p. baiocco, g. colotti, s. franceschini, a. ilari
Keywords: leishamnia, antimonials, flavoprotein, reduced nadph, oxidoreductase, redox-active center, trypanothione metabolism
- 2w3p.pdb.
lyase 13-nov-08 2w3p
Title: boxc crystal structure
Author: j. bains, m. j. boulanger
Keywords: boxc, lyase, crotonase, ring cleaving, burkholderia xenovorans lb400 crotonase
- 2w6v.pdb.
oxygen transport 19-dec-08 2w6v
Fe Xe
Title: structure of human deoxy hemoglobin a in complex with xenon
Author: a. e. miele, f. draghi, g. sciara, k. a. johnson, f. renzi, b. vallone, m. brunori, c. savino
Keywords: packing defects, hydrophobic cavities
- 2w6w.pdb.
oxygen storage 19-dec-08 2w6w
Fe Xe
Title: crystal structure of recombinant sperm whale myoglobin under 1atm of xenon
Author: a. e. miele, f. draghi, f. renzi, g. sciara, k. a. johnson, b. vallone, m. brunori, c. savino
Keywords: oxygen storage, oxygen transport, xenon docking site, iron, heme, transport, metal-binding, muscle protein
- 2w72.pdb.
oxygen transport 19-dec-08 2w72
K Fe Xe
Title: deoxygenated structure of a distal site hemoglobin mutant plus xe
Author: a. e. miele, f. draghi, g. sciara, k. a. johnson, f. renzi, b. vallone, m. brunori, c. savino
Keywords: metal-binding
- 2w7y.pdb.
sugar-binding protein 06-jan-09 2w7y
I Se
Title: structure of a streptococcus pneumoniae solute-binding protein in complex with the blood group a-trisaccharide.
Author: m. a. higgins, d. w. abbott, m. j. boulanger, a. b. boraston
Keywords: solute-binding protein, streptococcus pneumoniae, blood group antigen, carbohydrate transport
- 2w80.pdb.
immune system 08-jan-09 2w80
Title: structure of a complex between neisseria meningitidis factor h binding protein and ccps 6-7 of human complement factor h
Author: m. c. schneider, b. e. prosser, j. j. e. caeser, e. kugelberg, s. li, q. zhang, s. quoraishi, j. e. lovett, j. e. deane, r. b. sim, p. roversi, s. johnson, c. m. tang, s. m. lea
Keywords: complement alternate pathway, vaccine candidate, alternative splicing, immune system
- 2w81.pdb.
immune system 08-jan-09 2w81
Title: structure of a complex between neisseria meningitidis factor h binding protein and ccps 6-7 of human complement factor h
Author: m. c. schneider, b. e. prosser, j. j. e. caeser, e. kugelberg, s. li, q. zhang, s. quoraishi, j. e. lovett, j. e. deane, r. b. sim, p. roversi, s. johnson, c. m. tang, s. m. lea
Keywords: complement alternate pathway, vaccine candidate, alternative splicing, immune system
- 2w8y.pdb.
receptor 20-jan-09 2w8y
Title: ru486 bound to the progesterone receptor in a destabilized agonistic conformation
Author: h. c. a. raaijmakers, j. versteeg, j. c. m. uitdehaag
Keywords: progesterone receptor, ru-486, mifepristone
- 2w91.pdb.
hydrolase 21-jan-09 2w91
Title: structure of a streptococcus pneumoniae family 85 glycoside hydrolase, endo-d.
Author: d. w. abbott, m. s. macauley, d. j. vocadlo, a. b. boraston
Keywords: n-glycan, secreted, oxazoline, nag-thiazoline, substrate-participation, enzyme mechanism, anchimeric assistance
- 2w92.pdb.
hydrolase 21-jan-09 2w92
Title: structure of a streptococcus pneumoniae family 85 glycoside hydrolase, endo-d, in complex with nag-thiazoline.
Author: d. w. abbott, m. s. macauley, d. j. vocadlo, a. b. boraston
Keywords: nag-thiazoline, anchimeric assistance, n-glycan, substrate-participation, oxazoline, enzyme mechanism.
- 2w9n.pdb.
cell cycle 27-jan-09 2w9n
Cl Zn
Title: crystal structure of linear di-ubiquitin
Author: d. komander, f. reyes-turcu, k. d. wilkinson, d. barford
Keywords: k63, ikk, nemo, lys63, linear, ubiquitin, signalling cell cycle
- 2w9r.pdb.
chaperone 28-jan-09 2w9r
Title: structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps
Author: v. schuenemann, s. m. kralik, r. albrecht, s. k. spall, k. n. truscott, d. a. dougan, k. zeth
Keywords: adaptor protein, dna condensation, iron, clps, clpa, cytoplasm, n-end rule, dna-binding, iron storage, metal-binding, oxidoreductase
- 2wa8.pdb.
peptide-binding protein 03-feb-09 2wa8
Title: structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps - the phe peptide structure
Author: v. j. schuenemann, s. m. kralik, r. albrecht, s. k. spall, k. n. truscott, d. a. dougan, k. zeth
Keywords: phe peptide, clps, clpa, clpp, peptide-binding protein
- 2wa9.pdb.
peptide-binding protein 03-feb-09 2wa9
Title: structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps - trp peptide structure
Author: v. j. schuenemann, s. m. kralik, r. albrecht, s. k. spall, k. n. truscott, d. a. dougan, k. zeth
Keywords: clpa, clpp, n-end rule recognition, peptide-binding protein
- 2wbe.pdb.
structural protein 26-feb-09 2wbe
Mg
(electron microscopy)
Title: kinesin-5-tubulin complex with amppnp
Author: a. j. bodey, m. kikkawa, c. a. moores
Keywords: structural protein
- 2wd1.pdb.
transferase 19-mar-09 2wd1
Title: human c-met kinase in complex with azaindole inhibitor
Author: j. porter, s. lumb, r. j. franklin, j. m. gascon-simorte, m. calmiano, k. le riche, b. lallemand, j. keyaerts, h. edwards, a. maloney, j. delgado, l. king, a. foley, f. lecomte, j. reuberson, c. meier, m. batchelor
Keywords: c-met, azaindole, inhibitor, transferase, kinase, nucleotide-binding, atp-binding, tyrosine-protein kinase
- 2wdg.pdb.
ribosome 24-mar-09 2wdg
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a-site trna, deacylated p-site trna, and e-site trna. this file contains the 30s subunit a-,p-, and e-site trnas and paromomycin for molecule i.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: ribosomal protein, ribonucleoprotein, translation, coiled coil, trna-binding, rrna-binding, trna, zinc, mrna, ribosome, rna-binding, zinc-finger
- 2wdh.pdb.
ribosome 24-mar-09 2wdh
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a-site trna, deacylated p-site trna, and e-site trna. this file contains the 30s subunit a-,p-, and e-site trnas and paromomycin for molecule ii.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: ribosomal protein, ribonucleoprotein, translation, coiled coil, trna-binding, rrna-binding, trna, zinc, mrna, ribosome, rna-binding, zinc-finger
- 2wdi.pdb.
ribosome 24-mar-09 2wdi
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a-site trna, deacylated p-site trna, and e-site trna. this file contains the 50s subunit for molecule i.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: translation, paromomycin, trna-binding, trna, zinc, mrna, ribosome, repressor, rna-binding, ribonucleoprotein, translation regulation, rrna-binding, metal-binding, ribosomal protein
- 2wdj.pdb.
ribosome 24-mar-09 2wdj
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a-site trna, deacylated p-site trna, and e-site trna. this file contains the 50s subunit for molecule ii.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: zinc, mrna, ribosome, repressor, rna-binding, metal-binding, ribosomal protein, ribonucleoprotein, translation regulation, methylation, translation, trna-binding, rrna-binding
- 2wdk.pdb.
ribosome 24-mar-09 2wdk
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a- and p-site trnas, and e-site trna. this file contains the 30s subunit a-,p-, and e-site trnas and paromomycin for molecule i.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: ribosomal protein, ribonucleoprotein, translation, coiled coil, trna-binding, rrna-binding, trna, zinc, mrna, ribosome, rna-binding, zinc-finger
- 2wdl.pdb.
ribosome 24-mar-09 2wdl
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a- and p-site trnas, and e-site trna. this file contains the 50s subunit for molecule i.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: translation, paromomycin, trna-binding, trna, zinc, mrna, ribosome, repressor, rna-binding, ribonucleoprotein, translation regulation, rrna-binding, metal-binding, ribosomal protein
- 2wdm.pdb.
ribosome 24-mar-09 2wdm
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a- and p-site trnas, and e-site trna. this file contains the 30s subunit a-,p-, and e-site trnas and paromomycin for molecule ii.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: ribosomal protein, ribonucleoprotein, translation, coiled coil, trna-binding, rrna-binding, trna, zinc, mrna, ribosome, rna-binding, zinc-finger
- 2wdn.pdb.
ribosome 24-mar-09 2wdn
Title: structure of the thermus thermophilus 70s ribosome in complex with mrna, paromomycin, acylated a- and p-site trnas, and e-site trna. this file contains the 50s subunit for molecule ii.
Author: r. m. voorhees, a. weixlbaumer, d. loakes, a. c. kelley, v. ramakrishnan
Keywords: translation, paromomycin, trna-binding, trna, zinc, mrna, ribosome, repressor, rna-binding, ribonucleoprotein, translation regulation, rrna-binding, metal-binding, ribosomal protein
- 2wei.pdb.
transferase 31-mar-09 2wei
Title: crystal structure of the kinase domain of cryptosporidium parvum calcium dependent protein kinase in complex with 3- mb-pp1
Author: a. k. roos, o. king, a. chaikuad, c. zhang, k. m. shokat, a. k. wernimont, j. d. artz, l. lin, f. i. mackenzie, p. j. finerty, m. vedadi, m. schapira, m. indarte, i. kozieradzki, a. c. w. pike, o. fedorov, d. doyle, j. muniz, c. h. arrowsmith, j. weigelt, a. edwards, c. bountra, f. vondelft, t. heightman, r. hui
Keywords: serine/threonine-protein kinase, kinase, calcium, cgd3_920, transferase, atp-binding
- 2wg5.pdb.
transcription/hydrolase 15-apr-09 2wg5
Title: proteasome-activating nucleotidase (pan) n-domain (57-134) from archaeoglobus fulgidus fused to gcn4
Author: m. d. hartmann, s. djuranovic, a. ursinus, k. zeth, a. n. lupas
Keywords: dna-binding, activator, phosphoprotein, transcription/hydrolase
- 2wg6.pdb.
transcription/hydrolase 15-apr-09 2wg6
Title: proteasome-activating nucleotidase (pan) n-domain (57-134) from archaeoglobus fulgidus fused to gcn4, p61a mutant
Author: m. d. hartmann, s. djuranovic, a. ursinus, k. zeth, a. n. lupas
Keywords: dna-binding, activator, phosphoprotein, transcription/hydrolase
- 2zoc.pdb.
metal binding protein, lipid binding pro08-may-08 2zoc
Ca
Title: crystal structure of recombinant human annexin iv
Author: m. konno, y. kaneko-kanzaki, n. fushinobu-okushi, k. mochizuki, e. uchikaw, a. satoh, k. aikawa
Keywords: annexin, calcium, calcium/phospholipid-binding, metal binding protein, lipid binding protein
- 2zpu.pdb.
isomerase 29-jul-08 2zpu
Mg
Title: crystal structure of modified serine racemase from s.pombe.
Author: m. goto
Keywords: lyase, pyridoxal phosphate, isomerase
- 2zy2.pdb.
lyase 13-jan-09 2zy2
Title: dodecameric l-aspartate beta-decarboxylase
Author: h. -j. chen, t. -p. ko, c. -y. lee, n. -c. wang, a. h. -j. wang
Keywords: aminotransferase, lyase
- 2zy3.pdb.
lyase 13-jan-09 2zy3
Title: dodecameric l-aspartate beta-decarboxylase
Author: h. -j. chen, t. -p. ko, c. -y. lee, n. -c. wang, a. h. -j. wang
Keywords: aminotransferase, lyase
- 2zy4.pdb.
lyase 13-jan-09 2zy4
Cl
Title: dodecameric l-aspartate beta-decarboxylase
Author: h. -j. chen, t. -p. ko, c. -y. lee, n. -c. wang, a. h. -j. wang
Keywords: aminotransferase, lyase
- 2zy5.pdb.
lyase 13-jan-09 2zy5
Title: r487a mutant of l-aspartate beta-decarboxylase
Author: h. -j. chen, t. -p. ko, c. -y. lee, n. -c. wang, a. h. -j. wang
Keywords: aminotransferase, lyase
- 3a0i.pdb.
transferase 19-mar-09 3a0i
F Na
Title: human glucokinase in complex with a synthetic activator
Author: k. kamata, m. mitsuya
Keywords: diabetes, activator, alternative splicing, atp- binding, diabetes mellitus, disease mutation, glycolysis, kinase, nucleotide-binding, polymorphism, transferase
- 3c8j.pdb.
immune system 12-feb-08 3c8j
Title: the crystal structure of natural killer cell receptor ly49c
Author: l. deng, r. a. mariuzza
Keywords: mhc, virus, crystal structure, immune system
- 3c8k.pdb.
immune system 12-feb-08 3c8k
Title: the crystal structure of ly49c bound to h-2kb
Author: l. deng, r. a. mariuzza
Keywords: glycoprotein, immune response, membrane, mhc i, transmembrane, immunoglobulin domain, secreted, immune system
- 3cm3.pdb.
hydrolase 20-mar-08 3cm3
Title: high resolution crystal structure of the vaccinia virus dual-specificity phosphatase vh1
Author: a. c. koksal, g. cingolani
Keywords: vaccinia virus, vh1, hydrolase, late protein, protein phosphatase
- 3cqo.pdb.
sugar binding protein 03-apr-08 3cqo
Cl Ca
Title: crystal structure of a f-lectin (fucolectin) from morone saxatilis (striped bass) serum
Author: m. a. bianchet, l. m. amzel
Keywords: fucolectin, sugar binding protein
- 3cqv.pdb.
transcription 03-apr-08 3cqv
Fe Se
Title: crystal structure of reverb beta in complex with heme
Author: x. xu, a. dong, k. i. pardee, j. reinking, h. krause, a. schuetz, r. zhang, h. cui, a. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. savchenko, a. botchkarev, structural genomics consortium (sgc)
Keywords: heme, nr1d2, nuclear receptor, dna-binding, metal-binding, nucleus, repressor, transcription, transcription regulation, zinc, zinc-finger, structural genomics, structural genomics consortium, sgc
- 3cve.pdb.
signaling protein 18-apr-08 3cve
Se
Title: crystal structure of the carboxy terminus of homer1
Author: m. k. hayashi, m. h. stearns, v. giannini, r. -m. xu, c. sala, y. hayashi
Keywords: alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse, signaling protein
- 3cvf.pdb.
signaling protein 18-apr-08 3cvf
Se
Title: crystal structure of the carboxy terminus of homer3
Author: m. k. hayashi, m. h. stearns, v. giannini, r. -m. xu, c. sala, y. hayashi
Keywords: alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism, postsynaptic cell membrane, synapse, signaling protein
- 3cw0.pdb.
chaperone 21-apr-08 3cw0
Title: e.coli dmsd
Author: s. ramasamy, w. clemons
Keywords: alpha-helices, chaperone, cytoplasm, membrane
- 3cx4.pdb.
transferase 23-apr-08 3cx4
Na
Title: crystal structure of e.coli gs mutant e377a in complex with adp and oligosaccharides
Author: f. sheng, j. h. geiger
Keywords: gt-b fold, rossmann fold, closed-form, adp and oligosaccharide binding, glycogen biosynthesis, glycosyltransferase
- 3cx9.pdb.
structural protein 24-apr-08 3cx9
Title: crystal structure of human serum albumin complexed with myristic acid and lysophosphatidylethanolamine
Author: s. h. guo, f. yang, l. q. chen, c. b. bian, m. d. huang
Keywords: glycoprotein, lipid-binding, metal-binding, polymorphism, secreted, structural protein
- 3cxc.pdb.
ribosome 24-apr-08 3cxc
Cl Mg F K Na Cd
Title: the structure of an enhanced oxazolidinone inhibitor bound to the 50s ribosomal subunit of h. marismortui
Author: j. a. ippolito, d. wang, z. f. kanyo, e. m. duffy
Keywords: oxazolidinone, ribosome
- 3cy5.pdb.
oxygen storage, oxygen transport 25-apr-08 3cy5
Fe
Title: crystal structure determination of buffalo (bubalus bubalis) hemoglobin at 2 angstrom resolution
Author: m. balasubramanian, pon. sathya moorthy, k. neelagandan, m. n. ponnuswamy
Keywords: bubalus bubalis, low oxygen-affinity, orthorhombic, methemoglobin, heme, iron, transport, oxygen storage, oxygen transport
- 3cyv.pdb.
lyase 26-apr-08 3cyv
Title: crystal structure of uroporphyrinogen decarboxylase from shigella flexineri: new insights into its catalytic mechanism
Author: h. liu, h. zhou, r. bi
Keywords: cytoplasm, decarboxylase, lyase, porphyrin biosynthesis
- 3cyz.pdb.
pheromone binding protein 27-apr-08 3cyz
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with 9-keto-2(e)-decenoic acid at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz0.pdb.
pheromone binding protein 27-apr-08 3cz0
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with the n-butyl benzene sulfonamide at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz1.pdb.
pheromone binding protein 27-apr-08 3cz1
Cl Mg
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera in complex with the n-butyl benzene sulfonamide at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: pheromone binding protein, signal transduction, queen mandibular pheromone
- 3cz2.pdb.
pheromone binding protein 27-apr-08 3cz2
Cl
Title: dimeric crystal structure of a pheromone binding protein from apis mellifera at ph 7.0
Author: m. e. pesenti, s. spinelli, v. bezirard, l. briand, j. c. pernollet, m. tegoni, c. cambillau
Keywords: apis mellifera, signal transduction, queen mandibular protein, pheromone binding protein
- 3d3f.pdb.
oxidoreductase 10-may-08 3d3f
Title: crystal structure of yvgn and cofactor nadph from bacillus subtilis
Author: y. f. zhou, j. lei, x. d. su
Keywords: oxidoreductase
- 3d43.pdb.
hydrolase 13-may-08 3d43
Ca
Title: the crystal structure of sph at 0.8a
Author: o. almog
Keywords: calcium binding, hydrolase, serine protease
- 3d7e.pdb.
transferase 21-may-08 3d7e
Title: enterococcus casseliflavus glycerol kinase mutant his232ala complexed with glycerol
Author: j. i. yeh, a. vahedi-faridi
Keywords: atp-binding, glycerol metabolism, nucleotide- binding, phosphoprotein, transferase
- 3da7.pdb.
protein binding 28-may-08 3da7
Title: a conformationally strained, circular permutant of barnase
Author: g. mitrousis, j. butler, s. n. loh, g. cingolani
Keywords: protein-protein complex, endonuclease, cytoplasm, protein binding
- 3dfn.pdb.
lyase 12-jun-08 3dfn
Title: d33n mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, acetylation, glycolysis, lyase, phosphoprotein, schiff base
- 3dfo.pdb.
lyase 12-jun-08 3dfo
Title: dihydroxyacetone phosphate schiff base and enamine intermediates in d33n mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, iminium, schiff base, enamine, intermediate, covalent, lyase
- 3dfp.pdb.
lyase 12-jun-08 3dfp
Title: phosphate ions in d33n mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, phosphate, ion, lyase
- 3dfq.pdb.
lyase 12-jun-08 3dfq
Title: d33s mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, acetylation, glycolysis, lyase, phosphoprotein, schiff base
- 3dfs.pdb.
lyase 12-jun-08 3dfs
Title: dihydroxyacetone phosphate schiff base intermediate in d33s mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, iminium, schiff base, intermediate, covalent, acetylation, glycolysis, lyase, phosphoprotein
- 3dft.pdb.
lyase 12-jun-08 3dft
Title: phosphate ions in d33s mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Author: m. st-jean, j. sygusch
Keywords: mutant, phosphate, ion, acetylation, glycolysis, lyase, phosphoprotein, schiff base
- 3dh3.pdb.
isomerase/rna 16-jun-08 3dh3
F
Title: crystal structure of rluf in complex with a 22 nucleotide rna substrate
Author: a. alian, a. degiovanni, r. m. stroud, j. s. finer-moore
Keywords: s4 domain, alpha/beta protein, isomerase, rna-binding, rrna processing, isomerase/rna complex
- 3e2f.pdb.
transferase, lyase 05-aug-08 3e2f
Title: crystal structure of mouse kynurenine aminotransferase iii, plp-bound form
Author: q. han, r. robinson, t. cai, d. a. tagle, j. li
Keywords: plp dependent protein, alternative splicing, aminotransferase, lyase, pyridoxal phosphate, transferase
- 3e2y.pdb.
transferase, lyase 06-aug-08 3e2y
Title: crystal structure of mouse kynurenine aminotransferase iii in complex with glutamine
Author: q. han, r. robinson, t. cai, d. a. tagle, j. li
Keywords: plp dependent protein, alternative splicing, aminotransferase, lyase, pyridoxal phosphate, transferase
- 3e2z.pdb.
transferase, lyase 06-aug-08 3e2z
Title: crystal structure of mouse kynurenine aminotransferase iii in complex with kynurenine
Author: q. han, r. robinson, t. cai, d. a. tagle, j. li
Keywords: plp dependent protein, alternative splicing, aminotransferase, lyase, pyridoxal phosphate, transferase
- 3e4h.pdb.
plant protein 11-aug-08 3e4h
Title: crystal structure of the cyclotide varv f
Author: s. h. hu
Keywords: circular proteins, cystine knot, cyclization, plant protein, knottin, plant defense
- 3ebj.pdb.
transferase 27-aug-08 3ebj
Mg
Title: crystal structure of an avian influenza virus protein
Author: p. yuan, m. bartlam, z. lou, s. chen, z. rao, y. liu
Keywords: avian influenza, polymerase, pa_n, phosphoprotein, transferase
- 3ecr.pdb.
transferase 01-sep-08 3ecr
Title: structure of human porphobilinogen deaminase
Author: g. song, y. li, c. cheng, y. zhao, a. gao, r. zhang, a. joachimiak, n. shaw, z. j. liu
Keywords: x-ray structure, heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis, transferase
- 3eh9.pdb.
transferase 11-sep-08 3eh9
Title: crystal structure of death associated protein kinase complexed with adp
Author: l. k. mcnamara, d. m. watterson, j. s. brunzelle
Keywords: ank repeat, apoptosis, atp-binding, calmodulin-binding, cytoplasm, kinase, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3eha.pdb.
transferase 11-sep-08 3eha
Title: crystal structure of death associated protein kinase complexed with amppnp
Author: l. k. mcnamara, d. m. watterson, j. s. brunzelle
Keywords: ank repeat, apoptosis, atp- binding, calmodulin-binding, cytoplasm, kinase, nucleotide- binding, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase
- 3ejh.pdb.
cell adhesion 18-sep-08 3ejh
Title: crystal structure of the fibronectin 8-9fni domain pair in complex with a type-i collagen peptide
Author: m. c. erat, e. d. lowe, i. d. campbell, i. vakonakis
Keywords: pyrrolidone carboxylic acid, secreted, sulfation
- 3em2.pdb.
dna 23-sep-08 3em2
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6038
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6038, bsu6038, anti- parallel, bimolecular, macromolecule, g-quadruplex, dna
- 3eqw.pdb.
dna 01-oct-08 3eqw
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6042 in small unit cell
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6042, bsu6042, anti- parallel, bimolecular, macromlecule, dna, g-quadruplex, telomere
- 3erp.pdb.
oxidoreductase 02-oct-08 3erp
Cl Zn Na As
Title: structure of idp01002, a putative oxidoreductase from and essential gene of salmonella typhimurium
Author: a. u. singer, g. minasov, e. evdokimova, j. s. brunzelle, m. kudritsdka, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
Keywords: predicted oxidoreductase, essential gene, salmonella, molecular replacement, structural genomics, center for structural genomics of infectious diseases, csgid
- 3eru.pdb.
dna 03-oct-08 3eru
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6045
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6045, bsu6045, anti- parallel, bimolecular, macromolecule, g-quadruplex, telomere, dna
- 3erw.pdb.
oxidoreductase 03-oct-08 3erw
Se
Title: crystal structure of stoa from bacillus subtilis
Author: a. crow, y. liu, m. c. moller, n. e. le brun, l. hederstedt
Keywords: resa-like fold, disulfide, dithiol, stoa, oxidoreductase, redox-active center, sporulation
- 3es0.pdb.
dna 03-oct-08 3es0
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6048
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6048, bsu6048, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
- 3esu.pdb.
immune system 06-oct-08 3esu
Title: crystal structure of anthrax-neutralizing single-chain antibody 14b7
Author: a. f. monzingo, j. a. maynard, b. l. iverson, g. georgiou, j. d. robertus
Keywords: monoclonal antibody, immunoglobulin, immune system
- 3esv.pdb.
immune system 06-oct-08 3esv
Title: crystal structure of the engineered neutralizing antibody m18
Author: a. f. monzingo, c. e. leysath, j. barnett, b. l. iverson, g. georgiou, j. d. robertus
Keywords: monoclonal antibody, immunoglobulin, immune system
- 3et8.pdb.
dna 07-oct-08 3et8
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6054
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6054, bsu6054, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
- 3et9.pdb.
immune system 07-oct-08 3et9
Title: crystal structure of the engineered neutralizing antibody 1h
Author: c. e. leysath, a. f. monzingo, j. barnett, b. l. iverson, g. georgiou, j. d. robertus
Keywords: monoclonal antibody, immunoglobulin, immune system
- 3etb.pdb.
immune system/toxin 07-oct-08 3etb
Title: crystal structure of the engineered neutralizing antibody m18 complexed with anthrax protective antigen domain 4
Author: a. f. monzingo, c. e. leysath, j. barnett, b. l. iverson, g. georgiou, j. d. robertus
Keywords: monoclonal antibody, immunoglobulin, toxin, antibody-antigen complex, immune system/toxin complex
- 3eui.pdb.
dna 10-oct-08 3eui
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6042 in a large unit cell
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6042, bsu6042, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
- 3eum.pdb.
dna 10-oct-08 3eum
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6066
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxtyricha nova, bsu-6066, bsu6066, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
- 3ews.pdb.
hydrolase 16-oct-08 3ews
Title: human dead-box rna-helicase ddx19 in complex with adp
Author: l. lehtio, t. karlberg, j. andersson, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, k. olesen, c. persson, j. sagemark, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wikstrom, m. wisniewska, h. schueler, structural genomics consortium (sgc)
Keywords: mrna transport, nuclear pore complex, nucleus, protein transport, translocation, transport
- 3ey1.pdb.
hydrolase/dna 17-oct-08 3ey1
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: protein-dna complex, x-ray crystallography, endonuclease, 2'-thiomethyl uridine ribonucleic acid, cytoplasm, hydrolase, magnesium, manganese, metal-binding, nuclease, hydrolase/dna complex
- 3ey2.pdb.
dna 17-oct-08 3ey2
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: modified sugar, nucleic acid structure.
- 3ey3.pdb.
dna 17-oct-08 3ey3
Sr
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: crystal structure, 2'-thiomethyl uridine, modified sugar
- 3f27.pdb.
transcription/dna 29-oct-08 3f27
Title: structure of sox17 bound to dna
Author: p. palasingam, r. jauch, c. k. l. ng, p. r. kolatkar
Keywords: hmg domain, endodermal, activator, alternative splicing, dna-binding, nucleus, transcription, transcription regulation, transcription/dna complex
- 3f7p.pdb.
structural protein/cell adhesion 10-nov-08 3f7p
Ca
Title: crystal structure of a complex between integrin beta4 and plectin
Author: j. m. de pereda
Keywords: glycoprotein, membrane, polymorphism, receptor, transmembrane, structural protein/cell adhesion complex
- 3f7q.pdb.
cell adhesion 10-nov-08 3f7q
He Cl Hg
Title: first pair of fibronectin type iii domains and part of the connecting segment of the integrin beta4
Author: j. m. de pereda
Keywords: hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
- 3f7r.pdb.
cell adhesion 10-nov-08 3f7r
He Cl Hg
Title: first pair of fibronectin type iii domains and part of the connecting segment of the integrin beta4
Author: j. m. de pereda
Keywords: hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
- 3f9n.pdb.
transferase 14-nov-08 3f9n
Cl
Title: crystal structure of chk1 kinase in complex with inhibitor 38
Author: y. yan, s. munshi, m. ikuta
Keywords: ubl conjugation
- 3fcf.pdb.
hydrolase 21-nov-08 3fcf
Title: complex of ung2 and a fragment-based designed inhibitor
Author: m. a. bianchet, s. chung, j. b. parker, l. m. amzel, j. t. stivers
Keywords: uracil, uracil dna glycosylase, alternative splicing, disease mutation, dna damage, glycosidase, host- virus interaction, hydrolase, mitochondrion, nucleus, phosphoprotein, transit peptide
- 3fci.pdb.
hydrolase 21-nov-08 3fci
Na
Title: complex of ung2 and a fragment-based designed inhibitor
Author: m. a. bianchet, s. chung, j. b. parker, l. m. amzel, j. t. stivers
Keywords: uracil, uracil dna glycosylase, alternative splicing, disease mutation, dna damage, glycosidase, host- virus interaction, hydrolase, mitochondrion, nucleus, phosphoprotein, transit peptide
- 3fck.pdb.
hydrolase 21-nov-08 3fck
Title: complex of ung2 and a fragment-based design inhibitor
Author: m. a. bianchet, s. chung, j. b. parker, l. m. amzel, j. t. stivers
Keywords: uracil, uracil dna glycosylase, alternative splicing, disease mutation, dna damage, glycosidase, host- virus interaction, hydrolase, mitochondrion, nucleus, phosphoprotein, transit peptide
- 3fcl.pdb.
hydrolase 21-nov-08 3fcl
Title: complex of ung2 and a fragment-based designed inhibitor
Author: m. a. bianchet, s. chung, j. b. parker, l. m. amzel, j. t. stivers
Keywords: uracil, uracil dna glycosylase, alternative splicing, disease mutation, dna damage, glycosidase, host- virus interaction, hydrolase, mitochondrion, nucleus, phosphoprotein, transit peptide
- 3fdo.pdb.
cell cycle 26-nov-08 3fdo
Mg
Title: structure of human mdmx in complex with high affinity peptide
Author: a. l. czarna, g. m. popowicz, t. a. holak
Keywords: mdm4, mdm-x, mdm-4, p53, mdm2, cell cycle
- 3fdy.pdb.
oxidoreductase 26-nov-08 3fdy
Title: pyranose 2-oxidase thermostable triple mutant, t169g/e542k/v546c
Author: t. c. tan, c. divne
Keywords: thermostable, mutant, gmc oxidoreductase, 8-alpha-(n3) histidyl flavinylation, oxidoreductase
- 3ffd.pdb.
immune system/hormone 03-dec-08 3ffd
Title: structure of parathyroid hormone-related protein complexed to a neutralizing monoclonal antibody
Author: w. j. mckinstry, g. polekhina, h. diefenbach-jagger, p. w. m. ho, k. sato, e. onuma, m. t. gillespie, t. j. martin, m. w. parker
Keywords: alternative splicing, calcium, cleavage on pair of basic residues, cytoplasm, hormone, nucleus, polymorphism, secreted, immune system/hormone complex
- 3fgq.pdb.
hydrolase inhibitor 08-dec-08 3fgq
Title: crystal structure of native human neuroserpin
Author: s. takehara, x. yang, b. mikami, m. onda
Keywords: polymerization,dementia,tpa,inhibitor, disease mutation, glycoprotein, protease inhibitor, secreted, serine protease inhibitor, hydrolase inhibitor
- 3fha.pdb.
hydrolase 09-dec-08 3fha
Mg Ca
Title: structure of endo-beta-n-acetylglucosaminidase a
Author: j. yin, l. li, n. shaw, y. li, j. k. song, w. zhang, c. xia, r. zhang, a. joachimiak, h. c. zhang, l. x. wang, p. wang, z. j. liu
Keywords: x-ray structure, glycoprotein, man3glcnac- thiazoline, glcnac-asn, glycosidase, hydrolase
- 3fjx.pdb.
transferase 15-dec-08 3fjx
Title: e. coli epsp synthase (t97i) liganded with s3p
Author: ernst schonbrunn
Keywords: amino-acid biosynthesis, aromatic amino acid biosynthesis, cytoplasm, transferase
- 3fjz.pdb.
transferase 15-dec-08 3fjz
Title: e. coli epsp synthase (t97i) liganded with s3p and glyphosate
Author: ernst schonbrunn
Keywords: amino-acid biosynthesis, aromatic amino acid biosynthesis, cytoplasm, transferase
- 3fk0.pdb.
transferase 15-dec-08 3fk0
Title: e. coli epsp synthase (tips mutation) liganded with s3p
Author: ernst schonbrunn
Keywords: amino-acid biosynthesis, aromatic amino acid biosynthesis, cytoplasm, transferase
- 3fk1.pdb.
transferase 15-dec-08 3fk1
Title: e. coli epsp synthase (tips mutation) liganded with s3p and glyphosate
Author: ernst schonbrunn
Keywords: amino-acid biosynthesis, aromatic amino acid biosynthesis, cytoplasm, transferase
- 3fks.pdb.
hydrolase 17-dec-08 3fks
Title: yeast f1 atpase in the absence of bound nucleotides
Author: v. kabaleeswaran, j. symersky, h. shen, j. e. walker, a. g. w. leslie, d. m. mueller
Keywords: transport, hydrolase
- 3fl8.pdb.
oxidoreductase 18-dec-08 3fl8
Ca
Title: crystal structure of b. anthracis dihydrofolate reductase (dhfr) with rab1, a tmp-dihydrophthalazine derivative
Author: c. r. bourne, w. w. barrow
Keywords: pyrimidine, dihydrophthalazine
- 3fl9.pdb.
oxidoreductase 18-dec-08 3fl9
Ca
Title: crystal structure of b. anthracis dihydrofolate reductase (dhfr) with trimethoprim
Author: c. r. bourne, w. w. barrow
Keywords: pyrimidine, dihydrophthalazine
- 3fms.pdb.
transcription regulator 22-dec-08 3fms
He Hg Ni Se
Title: crystal structure of tm0439, a gntr transcriptional regulator
Author: m. zheng, d. r. cooper, m. yu, l-w. hung, u. derewenda, z. s. derewenda, integrated center for structure and function innovation (isfi)
Keywords: transcription regulation, transcription regulator, transcription
- 3fmt.pdb.
replication inhibitor/dna 22-dec-08 3fmt
Title: crystal structure of seqa bound to dna
Author: y. s. chung, t. brendler, s. austin, a. guarne
Keywords: hemimethylated gatc, dna replication, sequestration, dna replication inhibitor, dna-binding, replication inhibitor/dna complex
- 3fpp.pdb.
membrane protein 06-jan-09 3fpp
Title: crystal structure of e.coli maca
Author: s. yum, y. xu, s. piao, n. -c. ha
Keywords: membrane fusion protein, drug efflux pump, periplasmic protein, antibiotic resistance, cell inner membrane, cell membrane, membrane, transport, membrane protein
- 3fqd.pdb.
hydrolase/protein binding 07-jan-09 3fqd
Mg Se
Title: crystal structure of the s. pombe rat1-rai1 complex
Author: s. xiang, l. tong
Keywords: exonuclease, hydrolase, mrna processing, nuclease, nucleus, rrna processing, transcription, transcription regulation, transcription termination, phosphoprotein, hydrolase/protein binding complex
- 3fqg.pdb.
protein binding 07-jan-09 3fqg
Mg
Title: crystal structure of the s. pombe rai1
Author: s. xiang, l. tong
Keywords: mrna processing, nucleus, phosphoprotein, rrna processing, transcription, transcription regulation, transcription termination, protein binding
- 3fqi.pdb.
protein binding 07-jan-09 3fqi
Mg
Title: crystal structure of the mouse dom3z
Author: s. xiang, l. tong
Keywords: protein binding
- 3fqj.pdb.
protein binding 07-jan-09 3fqj
Mg
Title: crystal structure of the mouse dom3z in complex with gdp
Author: s. xiang, l. tong
Keywords: protein binding
- 3frp.pdb.
hydrolase cofactor 08-jan-09 3frp
Ca
Title: crystal structure of cobra venom factor, a co-factor for c3- and c5 convertase cvfbb
Author: v. krishnan, s. v. l. narayana
Keywords: secreted, thioester bond, toxin, hydrolase cofactor
- 3fsj.pdb.
lyase 09-jan-09 3fsj
Ca
Title: crystal structure of benzoylformate decarboxylase in complex with the inhibitor mbp
Author: g. s. brandt, g. l. kenyon, m. j. mcleish, f. jordan, g. a. petsko, d. ringe
Keywords: aromatic hydrocarbons catabolism, calcium, decarboxylase, lyase, magnesium, mandelate pathway, metal binding, thiamine pyrophosphate, metal-binding
- 3ft2.pdb.
immune system 12-jan-09 3ft2
Title: crystal structure of a citrulline peptide variant of the minor histocompatibility peptide ha-1 in complex with hla- a2
Author: j. -b. reiser, s. gras, a. chouquet, m. le gorrec, e. spierings, e. goulmy, d. housset
Keywords: host-versus-graft disease, graft-versus- tumor immune system
- 3ft3.pdb.
immune system 12-jan-09 3ft3
Title: crystal structure of the minor histocompatibility peptide ha-1his in complex with hla-a2
Author: j. -b. reiser, s. gras, a. chouquet, m. le gorrec, e. spierings, e. goulmy, d. housset
Keywords: host-versus-graft disease, graft-versus- tumor immune system
- 3ft4.pdb.
immune system 12-jan-09 3ft4
Title: crystal structure of the minor histocompatibility peptide ha-1arg in complex with hla-a2
Author: j. -b. reiser, s. gras, a. chouquet, m. le gorrec, e. spierings, e. goulmy, d. housset
Keywords: host-versus-graft disease, graft-versus- tumor immune system
- 3fut.pdb.
transferase 14-jan-09 3fut
Se
Title: apo-form of t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in space group p21212
Author: h. demirci, r. belardinelli, e. seri, s. t. gregory, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: dimethyltransferase, dual-specific methyltransferase, 16s rrna methyltransferase, translation, antibiotic resistance, rna-binding, rrna processing, s- adenosyl-l-methionine, transferase
- 3fuu.pdb.
transferase 14-jan-09 3fuu
Title: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in complex with adenosine in space group p212121
Author: h. demirci, r. belardinelli, e. seri, s. t. gregory, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: dimethyltransferase, dual-specific methyltransferase, 16s rrna methyltransferase, translation, antibiotic resistance, rna-binding, rrna processing, s- adenosyl-l-methionine, transferase
- 3fuv.pdb.
transferase 14-jan-09 3fuv
Title: apo-form of t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in space group p43212
Author: h. demirci, r. belardinelli, e. seri, s. t. gregory, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: dimethyltransferase, dual-specific methyltransferase, 16s rrna methyltransferase, translation, antibiotic resistance, rna-binding, rrna processing, s- adenosyl-l-methionine, transferase
- 3fuw.pdb.
transferase 14-jan-09 3fuw
Title: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in complex with 5'-methylthioadenosine in space group p212121
Author: h. demirci, r. belardinelli, e. seri, s. t. gregory, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: dimethyltransferase, dual-specific methyltransferase, 16s rrna methyltransferase, translation, antibiotic resistance, rna-binding, rrna processing, s- adenosyl-l-methionine, transferase
- 3fux.pdb.
transferase 14-jan-09 3fux
Title: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in complex with 5'-methylthioadenosine in space group p212121
Author: h. demirci, r. belardinelli, e. seri, s. t. gregory, c. gualerzi, a. e. dahlberg, g. jogl
Keywords: dimethyltransferase, dual-specific methyltransferase, 16s rrna methyltransferase, translation, antibiotic resistance, rna-binding, rrna processing, s- adenosyl-l-methionine, transferase
- 3fxd.pdb.
unknown function 20-jan-09 3fxd
Title: crystal structure of interacting domains of icmr and icmq
Author: s. raychaudhury, c. w. akey, j. f. head
Keywords: helix-turn-helix, unknown function
- 3fxe.pdb.
unknown function 20-jan-09 3fxe
Se
Title: crystal structure of interacting domains of icmr and icmq (seleno-derivative)
Author: s. raychaudhury, c. w. akey, j. f. head
Keywords: helix-turn-helix, se-met, unknown function
- 3fy4.pdb.
lyase 21-jan-09 3fy4
Title: (6-4) photolyase crystal structure
Author: k. hitomi, a. s. arvai, j. a. tainer, e. d. getzoff
Keywords: dna repair, clock cryptochrome, lyase
- 3g03.pdb.
cell cycle 27-jan-09 3g03
Title: structure of human mdm2 in complex with high affinity peptide
Author: a. l. czarna, g. m. popowicz, t. a. holak
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 3g0h.pdb.
hydrolase/rna 28-jan-09 3g0h
Mg
Title: human dead-box rna helicase ddx19, in complex with an atp- analogue and rna
Author: t. karlberg, l. lehtio, r. collins, c. h. arrowsmith, h. berglund, c. bountra, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, p. schutz, m. i. siponen, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wisniewska, h. schuler, structural genomics consortium (sgc)
Keywords: nucleus, phosphoprotein, polymorphism, protein transport, rna- binding, translocation, transport, polyuracil, hydrolase/rna complex
- 3g0w.pdb.
hormone 29-jan-09 3g0w
Cl F
Title: crystal structure of the rat androgen receptor ligand binding domain complex with an n-aryl-oxazolidin 2-imine inhibitor
Author: j. s. sack
Keywords: transcription, ubl conjugation, zinc, zinc-finger, hormone/growth factor complex
- 3g0z.pdb.
hydrolase, gene regulation 29-jan-09 3g0z
Mn Zn
Title: structure of s. pombe pop2p - zn2+ and mn2+ bound form
Author: k. r. andersen, a. t. jonstrup, l. b. van, d. e. brodersen
Keywords: deadenylation, ccr4-not, pop2p, caf1p, dedd exonuclease, hydrolase, gene regulation
- 3g10.pdb.
hydrolase, gene regulation 29-jan-09 3g10
Mg Mn
Title: structure of s. pombe pop2p - mg2+ and mn2+ bound form
Author: k. r. andersen, a. t. jonstrup, l. b. van, d. e. brodersen
Keywords: deadenylation, ccr4-not, pop2p, caf1p, dedd exonuclease, hydrolase, gene regulation
- 3g19.pdb.
peptide binding protein 29-jan-09 3g19
Title: the structure of the caulobacter crescentus clps protease adaptor protein in complex with lll tripeptide
Author: t. a. baker, g. roman-hernandez, r. t. sauer, r. a. grant
Keywords: protein-peptide complex, peptide-binding protein, peptide binding protein
- 3g1b.pdb.
peptide binding protein 29-jan-09 3g1b
He Hg Mg
Title: the structure of the m53a mutant of caulobacter crescentus clps protease adaptor protein in complex with wlfvqrdske peptide
Author: t. a. baker, g. roman-hernandez, r. t. sauer, r. a. grant
Keywords: protein-peptide complex, peptide-binding protein, peptide binding protein
- 3g3n.pdb.
hydrolase 02-feb-09 3g3n
Mg F Zn
Title: pde7a catalytic domain in complex with 3-(2,6- difluorophenyl)-2-(methylthio)quinazolin-4(3h)-one
Author: t. castano, h. wang
Keywords: crystal, inhibitor complex, alternative splicing, camp, hydrolase, phosphoprotein
- 3g40.pdb.
transport protein 03-feb-09 3g40
Title: crystal structure of the cytoplasmic domain of a prokaryotic cation chloride cotransporter
Author: s. warmuth, i. zimmermann, r. dutzler
Keywords: transport protein
- 3g4a.pdb.
transferase 03-feb-09 3g4a
Title: crystal structure of flavine dependant thymidylate synthase s88a mutant from thermotoga maritima at 1.95 angstrom resolution
Author: i. i. mathews, s. a. lesley, a. kohen
Keywords: thyx, s88a mutation, dump complex, fad, flavoprotein, methyltransferase, nucleotide biosynthesis, transferase
- 3g4s.pdb.
ribosome 04-feb-09 3g4s
Cl Sr Mg K Na Cd
Title: co-crystal structure of tiamulin bound to the large ribosomal subunit
Author: g. gurel, g. blaha, p. b. moore, t. a. steitz
Keywords: tiamulin, haloarcula marismortui, ribonucleoprotein, ribosomal protein, rna-binding, rrna- binding, trna-binding, metal-binding, zinc, zinc-finger, acetylation, ribosome
- 3g4x.pdb.
oxidoreductase 04-feb-09 3g4x
Cl Ni
Title: crystal structure of nisod y9f mutant
Author: s. c. garman, a. i. guce, r. w. herbst, p. a. bryngelson, d. e. cabelli, k. a. higgins, k. c. ryan, m. j. maroney
Keywords: hexamer, superoxide dismutase, nisod, sod,, antioxidant, cytoplasm, metal-binding, oxidoreductase
- 3g4z.pdb.
oxidoreductase 04-feb-09 3g4z
Br Ni
Title: crystal structure of nisod y9f mutant at 1.9 a
Author: s. c. garman, a. i. guce, r. w. herbst, p. a. bryngelson, d. e. cabelli, k. a. higgins, k. c. ryan, m. j. maroney
Keywords: hexamer, superoxide dismutase, nisod, sod, antioxidant, cytoplasm, metal-binding, oxidoreductase
- 3g50.pdb.
oxidoreductase 04-feb-09 3g50
Ni
Title: crystal structure of nisod d3a mutant at 1.9 a
Author: s. c. garman, a. i. guce, r. w. herbst, p. a. bryngelson, d. e. cabelli, k. a. higgins, k. c. ryan, m. j. maroney
Keywords: hexamer, superoxide dismutase, nisod, sod, antioxidant, cytoplasm, metal-binding, oxidoreductase
- 3g6a.pdb.
immune system 06-feb-09 3g6a
Title: crystal structure of anti-il-13 antibody cnto607
Author: a. teplyakov, g. obmolova, g. l. gilliland
Keywords: antibody, fab, monoclonal antibody, immune system
- 3g6d.pdb.
immune system 06-feb-09 3g6d
Title: crystal structure of the complex between cnto607 fab and il- 13
Author: a. teplyakov, g. obmolova, g. l. gilliland
Keywords: antibody, complex, epitope, cytokine, glycoprotein, polymorphism, secreted, monoclonal antibody, immune system
- 3g6e.pdb.
ribosome 06-feb-09 3g6e
Cl Sr Mg K Na Cd
Title: co-crystal structure of homoharringtonine bound to the large ribosomal subunit
Author: g. gurel, g. blaha, p. b. moore, t. a. steitz
Keywords: ribosome
- 3g6j.pdb.
immune system 06-feb-09 3g6j
Ca
Title: c3b in complex with a c3b specific fab
Author: c. wiesmann
Keywords: inflammatory response, innate immunity, phosphoprotein, polymorphism, secreted, thioester bond, immune system
- 3g6n.pdb.
hydrolase 07-feb-09 3g6n
Na Fe
Title: crystal structure of an efpdf complex with met-ala-ser
Author: k. y. hwang, k. h. nam
Keywords: peptide deformylase, hydrolase
- 3g71.pdb.
ribosome 09-feb-09 3g71
Cl Sr Mg K Na Cd
Title: co-crystal structure of bruceantin bound to the large ribosomal subunit
Author: g. gurel, g. blaha, p. b. moore, t. a. steitz
Keywords: haloarcula marismortui, bruceantin, ribonucleoprotein, ribosomal protein, rna-binding, rrna- binding, trna-binding, metal-binding, zinc, zinc-finger, acetylation, ribosome
- 3g90.pdb.
transferase 12-feb-09 3g90
F
Title: jnk-3 bound to (z)-5-fluoro-1-((6-fluoro-4h-benzo[d][1, 3]dioxin-8-yl)methyl)-3-(hydroxyimino)indolin-2-one
Author: x. xie, m. d. jacobs
Keywords: inhibitor, phosphorylation, alternative splicing, atp-binding, chromosomal rearrangement, cytoplasm, epilepsy, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
- 3g9l.pdb.
transferase 13-feb-09 3g9l
F
Title: jnk3 bound to (z)-1-((6-fluoro-4h-benzo[d][1,3]dioxin-8-yl) methyl)-3-(hydroxyimino)-4-styrylindolin-2-one
Author: m. d. jacobs
Keywords: inhibitor, phosphorylation, alternative splicing, atp-binding, chromosomal rearrangement, cytoplasm, epilepsy, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
- 3g9n.pdb.
transferase 13-feb-09 3g9n
F
Title: jnk3 bound to (z)-1-((6-fluoro-4h-benzo[d][1,3]dioxin-8-yl) methyl)-3-(hydroxyimino)-4-phenylindolin-2-one
Author: m. d. jacobs
Keywords: inhibitor, phosphorylation, alternative splicing, atp-binding, chromosomal rearrangement, cytoplasm, epilepsy, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
- 3gcw.pdb.
protein binding 22-feb-09 3gcw
Ca
Title: pcsk9:egfa(h306y)
Author: h. j. kwon
Keywords: protein binding
- 3gcx.pdb.
protein binding 22-feb-09 3gcx
Ca
Title: pcsk9:egfa (ph 7.4)
Author: m. c. mcnutt, h. j. kwon, c. chen, j. r. chen, j. d. horton, t. a. lagace
Keywords: protein binding
- 3gdn.pdb.
lyase 24-feb-09 3gdn
Title: almond hydroxynitrile lyase in complex with benzaldehyde
Author: i. dreveny, k. gruber, c. kratky
Keywords: flavin, gmc oxidoreductase, almond, cyanogenesis, flavoprotein, lyase
- 3gdp.pdb.
lyase 24-feb-09 3gdp
Title: hydroxynitrile lyase from almond, monoclinic crystal form
Author: i. dreveny, k. gruber, c. kratky
Keywords: flavin, gmc oxidoreductase, almond, cyanogenesis, flavoprotein, lyase
- 3geq.pdb.
transferase 25-feb-09 3geq
Cl
Title: structural basis for the chemical rescue of src kinase activity
Author: k. e. muratore, m. a. seeliger, z. wang, d. fomina, j. neiswinger, j. j. havranek, d. baker, j. kuriyan, p. a. cole
Keywords: chemical rescue, pp2, alternative splicing, atp- binding, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
- 3gjc.pdb.
transport protein 08-mar-09 3gjc
Na
Title: crystal structure of the e290s mutant of leut with bound og
Author: a. m. l. winther, m. quick, j. a. javitch, p. nissen
Keywords: neurotransmitter:sodium symport, sodium-coupled transport, nss, aminoacid transport, symport, transmembrane, transport, transport protein
- 3gjd.pdb.
transport protein 08-mar-09 3gjd
Cl Na
Title: crystal structure of leut with bound og
Author: a. m. l. winther, m. quick, j. a. javitch, p. nissen
Keywords: neurotransmitter:sodium symport, sodium-coupled transport, nss, aminoacid transport, symport, transmembrane, transport, transport protein
- 3gje.pdb.
immune system 08-mar-09 3gje
Title: rational development of high-affinity t-cell receptor-like antibodies
Author: g. stewart-jones, a. wadle, a. hombach, e. shenderov, g. held, e. fischer, s. kleber, f. stenner-liewen, s. bauer, a. mcmichael, a. knuth, h. abken, a. a. hombach, v. cerundolo, e. y. jones, c. renner
Keywords: pmhc, immune recognition, immune system
- 3gjf.pdb.
immune system 08-mar-09 3gjf
Title: rational development of high-affinity t-cell receptor-like antibodies
Author: g. stewart-jones, a. wadle, a. hombach, e. shenderov, g. held, e. fischer, s. kleber, f. stenner-liewen, s. bauer, a. mcmichael, a. knuth, h. abken, a. a. hombach, v. cerundolo, e. y. jones, c. renner
Keywords: immunoglobulin domain, pyrrolidone carboxylic acid, secreted, immune system
- 3gjg.pdb.
immune system 08-mar-09 3gjg
Title: rational development of high-affinity t-cell receptor-like antibodies
Author: g. stewart-jones, a. wadle, a. hombach, e. shenderov, g. held, e. fischer, s. kleber, f. stenner-liewen, s. bauer, a. mcmichael, a. knuth, h. abken, v. cerundolo, e. y. jones, c. renner
Keywords: immunoglobulin domain, pyrrolidone carboxylic acid, secreted, immune system
- 3gms.pdb.
structural genomics, unknown function 14-mar-09 3gms
Title: crystal structure of putative nadph:quinone reductase from bacillus thuringiensis
Author: u. a. ramagopal, c. morano, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: putative quinone oxidoreductase, unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3gna.pdb.
recombination 16-mar-09 3gna
Title: crystal structure of the rag1 nonamer-binding domain with dna
Author: f. f. yin, s. bailey, c. a. innis, t. a. steitz, d. g. schatz
Keywords: dna recombination, dna-binding, endonuclease, hydrolase, metal-binding, nuclease, nucleus, zinc, zinc-finger, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis
- 3gnb.pdb.
recombination 16-mar-09 3gnb
Title: crystal structure of the rag1 nonamer-binding domain with dna
Author: f. f. yin, s. bailey, c. a. innis, t. a. steitz, d. g. schatz
Keywords: dna recombination, dna-binding, endonuclease, hydrolase, metal-binding, nuclease, nucleus, zinc, zinc-finger
- 3go3.pdb.
dna 18-mar-09 3go3
Mn
Title: interactions of an echinomycin-dna complex with manganese(ii) ions
Author: r. pfoh, j. a. cuesta-seijo, g. m. sheldrick
Keywords: manganese ions, echinomycin
- 3goi.pdb.
transferase 19-mar-09 3goi
Title: human glucokinase in complex with a synthetic activator
Author: k. kamata, m. mitsuya
Keywords: diabetes, allosteric activator, atp-binding, glycolysis, kinase, nucleotide-binding, transferase
- 3gox.pdb.
hydrolase/dna 20-mar-09 3gox
Zn Na
Title: crystal structure of the beta-beta-alpha-me type ii restriction endonuclease hpy99i in the absence of edta
Author: m. sokolowska, h. czapinska, m. bochtler
Keywords: restriction enzyme, hpy99i, pseudopalindrome, hydrolase/dna complex
- 3gq0.pdb.
peptide binding protein 23-mar-09 3gq0
Title: the structure of the caulobacter crescentus clps protease adaptor protein - apo structure with no peptide
Author: t. a. baker, g. roman-hernandez, r. t. sauer, r. a. grant
Keywords: protein-peptide complex, peptide-binding protein, peptide binding protein
- 3gqt.pdb.
oxidoreductase 24-mar-09 3gqt
Title: crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei with fragment (1,4-dimethyl-1,2, 3,4-tetrahydroquinoxalin-6-yl)methylamine
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: seattle structural genomics center for infectious disease, glutaryl-coa dehydrogenase, bupsa.00027.a, fragment crystallography, fragments of life, oxidoreductase
- 3gtn.pdb.
hydrolase 27-mar-09 3gtn
Title: crystal structure of xync from bacillus subtilis 168
Author: f. j. st john, j. c. hurlbert, e. pozharski
Keywords: xylan degradation
- 3guh.pdb.
transferase 30-mar-09 3guh
Title: crystal structure of wild-type e.coli gs in complex with adp and dgm
Author: f. sheng, j. geiger
Keywords: gt-b fold, rossmann fold, closed-form, adp and intermediate d-glucopyranosylium binding, glycogen biosynthesis, glycosyltransferase, transferase
- 3gv4.pdb.
hydrolase 30-mar-09 3gv4
Zn Ca
Title: crystal structure of human hdac6 zinc finger domain and ubiquitin c-terminal peptide rlrgg
Author: a. dong, m. ravichandran, p. loppnau, y. li, f. mackenzie, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, s. dhe-paganon, j. min, h. ouyang, structural genomics consortium (sgc)
Keywords: transcription regulation, ubl conjugation, zinc, zinc-finger, structural genomics, structural genomics consortium
- 3gve.pdb.
structural genomics, unknown function 30-mar-09 3gve
Mg Mn Se
Title: crystal structure of calcineurin-like phosphoesterase yfkn from bacillus subtilis
Author: y. kim, n. marshall, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, metal-binding, nucleotide-binding, unknown function
- 3gvf.pdb.
hydrolase 30-mar-09 3gvf
K Na
Title: 1.7 angstrom crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei bound with phosphate
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: inorganic pyrophosphatase, hydrolase, seattle structural genomics center for infectious disease, ssgcid
- 3gvx.pdb.
oxidoreductase 31-mar-09 3gvx
K Se
Title: crystal structure of glycerate dehydrogenase related protein from thermoplasma acidophilum
Author: b. syed ibrahim, d. kumaran, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: psi-ii, glycerate dehydrogenase, 11143j, crystal structure, structural genomics, protein structure initiative, new york sgx research center for structural genomics, oxidoreductase
- 3gwa.pdb.
transferase 31-mar-09 3gwa
Title: 1.6 angstrom crystal structure of 3-oxoacyl-(acyl-carrier- protein) synthase iii
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: acyl carrier protein, synthetase, transferase, seattle structural genomics center for infectious disease, ssgcid
- 3gwc.pdb.
transferase 31-mar-09 3gwc
F
Title: crystal structure of mycobacterium tuberculosis thymidylate synthase x bound to fdump and fad
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: fad, fdump, flavoprotein, methyltransferase, nucleotide biosynthesis, transferase, structural genomics, seattle structural genomics center for infectious disease, ssgcid
- 3gwe.pdb.
transferase 31-mar-09 3gwe
Title: 2.1 angstrom crystal structure of 3-oxoacyl-(acyl-carrier- protein) synthase iii
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: fabh, structural genomics, transferase, seattle structural genomics center for infectious disease, ssgcid
- 3gws.pdb.
hormone activator 01-apr-09 3gws
I As
Title: crystal structure of t3-bound thyroid hormone receptor
Author: a. s. nascimento, s. m. g. dias, f. m. nunes, r. aparicio, i. polikarpov, j. d. baxter, p. webb
Keywords: t3, hinge, alternative splicing, deafness, disease mutation, dna-binding, metal-binding, nucleus, polymorphism, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone activator
- 3gyr.pdb.
oxidoreductase 05-apr-09 3gyr
Cu
Title: structure of phenoxazinone synthase from streptomyces antibioticus reveals a new type 2 copper center.
Author: a. w. smith, a. camara-artigas, m. wang, w. a. francisco, j. p. allen
Keywords: metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis, metal- binding
- 3gzc.pdb.
lyase 07-apr-09 3gzc
Title: structure of human selenocysteine lyase
Author: r. collins, m. hogbom, c. arrowsmith, h. berglund, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, b. m. hallberg, m. hammarstrom, t. karlberg, t. kotenyova, p. nilsson-ehle, p. nordlund, t. nyman, d. ogg, c. persson, j. sagemark, p. stenmark, m. sundstrom, a. g. thorsell, j. uppenberg, s. van den berg, j. weigelt, l. holmberg-schiavone, h. schuler, structural genomics consortium (sgc)
Keywords: selenocysteine, lyase, human, pyridoxal-5'-phosphate, plp, structural genomics, structural genomics consortium, sgc, alternative splicing, cytoplasm, polymorphism, pyridoxal phosphate, transferase
- 3gzd.pdb.
lyase 07-apr-09 3gzd
Title: human selenocysteine lyase, p1 crystal form
Author: t. karlberg, m. hogbom, c. h. arrowsmith, h. berglund, c. bountra, r. collins, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, m. moche, p. nordlund, t. nyman, c. persson, j. sagemark, p. schutz, m. i. siponen, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wisniewska, h. schuler, structural genomics consortium (sgc)
Keywords: scly, selenocysteine, lyase, human, pyridoxal-5'-phosphate, plp, structural genomics consortium, sgc
- 3h11.pdb.
apoptosis 10-apr-09 3h11
Title: zymogen caspase-8:c-flipl protease domain complex
Author: p. d. jeffrey, j. w. wu, y. shi
Keywords: apoptosis, caspase, alternative splicing, host- virus interaction, polymorphism, cytoplasm, disease mutation, hydrolase, phosphoprotein, protease, thiol protease, zymogen
- 3h13.pdb.
apoptosis 10-apr-09 3h13
Title: c-flipl protease-like domain
Author: p. d. jeffrey, j. w. yu, y. shi
Keywords: dimer, cell death, alternative splicing, apoptosis, host-virus interaction, polymorphism
- 3h17.pdb.
hydrolase 11-apr-09 3h17
Title: crystal structure of este5-pmsf (i)
Author: k. y. hwang, k. h. nam
Keywords: este5, esterase, lipase, hydrolase, pmsf, phenylmethylsulfonyl fluoride
- 3h18.pdb.
hydrolase 11-apr-09 3h18
Title: crystal structure of este5-pmsf (ii)
Author: k. y. hwang, k. h. nam
Keywords: este5, esterase, lipase, hydrolase, pmsf, phenylmethylsulfonyl fluoride
- 3h19.pdb.
hydrolase 11-apr-09 3h19
Title: crystal structure of este5, was soaked by methyl alcohol
Author: k. y. hwang, k. h. nam
Keywords: este5, esterase, lipase, hydrolase
- 3h1a.pdb.
hydrolase 11-apr-09 3h1a
Title: crystal structure of este5, was soaked by ethyl alcohol
Author: k. y. hwang, k. h. nam
Keywords: este5, esterase, lipase, hydrolase
- 3h1b.pdb.
hydrolase 11-apr-09 3h1b
Title: crystal structure of este5, was soaked by isopropyl alcohol
Author: k. y. hwang, k. h. nam
Keywords: este5, esterase, lipase, hydrolase
- 3h1h.pdb.
oxidoreductase 12-apr-09 3h1h
Fe
Title: cytochrome bc1 complex from chicken
Author: z. zhang, l. huang, v. m. shulmeister, y. i. chi, k. k. kim, l. w. hung, a. r. crofts, e. a. berry, s. h. kim
Keywords: electron transport, heme, iron, membrane, metal-binding, mitochondrion, mitochondrion inner membrane, transmembrane, transport, 2fe-2s, disulfide bond, iron-sulfur, transit peptide
- 3h1i.pdb.
oxidoreductase 12-apr-09 3h1i
Fe
Title: stigmatellin and antimycin bound cytochrome bc1 complex from chicken
Author: z. zhang, l. huang, v. m. shulmeister, y. i. chi, k. k. kim, l. w. hung, a. r. crofts, e. a. berry, s. h. kim
Keywords: transit peptide
- 3h1j.pdb.
oxidoreductase 12-apr-09 3h1j
Fe
Title: stigmatellin-bound cytochrome bc1 complex from chicken
Author: z. zhang, l. huang, v. m. shulmeister, y. -i. chi, k. k. kim, l. -w. hung, a. r. crofts, e. a. berry, s. -h. kim
Keywords: disulfide bond, iron-sulfur, transit peptide
- 3h1k.pdb.
oxidoreductase 12-apr-09 3h1k
I Zn Fe
Title: chicken cytochrome bc1 complex with zn++ and an iodinated derivative of kresoxim-methyl bound
Author: e. a. berry, z. zhang, h. d. bellamy, l. s. huang
Keywords: transit peptide
- 3h20.pdb.
replication 14-apr-09 3h20
Title: crystal structure of primase repb'
Author: s. geibel, s. banchenko, m. engel, e. lanka, w. saenger
Keywords: nucleotidyltransferase, helix-bundle-domain, replication, rsf1010, plasmid
- 3h25.pdb.
replication/dna 14-apr-09 3h25
Title: crystal structure of the catalytic domain of primase repb' in complex with initiator dna
Author: s. geibel, s. banchenko, m. engel, e. lanka, w. saenger
Keywords: hairpin dna, mixed alpha-beta fold, primase, rsf1010, plasmid, replication, replication/dna complex
- 3h2b.pdb.
transferase 14-apr-09 3h2b
Se
Title: crystal structure of the sam-dependent methyltransferase cg3271 from corynebacterium glutamicum in complex with s- adenosyl-l-homocysteine and pyrophosphate. northeast structural genomics consortium target cgr113a
Author: f. forouhar, s. lew, j. seetharaman, s. sahdev, r. xiao, e. l. foote, c. ciccosanti, d. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, methyltransferase, transferase
- 3h2d.pdb.
structural genomics, unknown function 14-apr-09 3h2d
Se
Title: crystal structure of chec-like superfamily protein (np_719446.1) from shewanella oneidensis at 1.86 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: chec-like superfamily, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3h2s.pdb.
oxidoreductase 14-apr-09 3h2s
Se
Title: crystal structure of the q03b84 protein from lactobacillus casei. northeast structural genomics consortium target lcr19.
Author: s. vorobiev, s. lew, j. seetharaman, d. wang, c. ciccosanti, s. sahdev, t. b. acton, r. xiao, j. everett, r. nair, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: nadh-flavin reductase, nesg, lcr19, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, oxidoreductase
- 3h3d.pdb.
rna binding protein 16-apr-09 3h3d
Title: drosophila pumilio rna binding domain (puf domain)
Author: t. a. edwards, a. k. aggarwal, r. p. wharton
Keywords: puf, rna binding domain, alternative splicing, cytoplasm, developmental protein, phosphoprotein, repressor, rna-binding, translation regulation, rna binding protein
- 3h3i.pdb.
lipid binding protein 16-apr-09 3h3i
Se
Title: crystal structure of putative lipid binding protein (np_811174.1) from bacteriodes thetaiotaomicron vpi-5482 at 2.20 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative lipid binding protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 3h3l.pdb.
hydrolase 16-apr-09 3h3l
Se
Title: crystal structure of putative sugar hydrolase (yp_001304206.1) from parabacteroides distasonis atcc 8503 at 1.59 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative sugar hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, domain of unknown function (duf1080), unknown function
- 3h3m.pdb.
structural genomics 16-apr-09 3h3m
Se
Title: crystal structure of flagellar protein flit from bordetella bronchiseptica
Author: i. a. shumilin, s. wang, m. chruszcz, x. xu, b. le, h. cui, a. savchenko, a. m. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, flagellum
- 3h49.pdb.
transferase 18-apr-09 3h49
Se
Title: crystal structure of a putative ribokinase (apo form) from e.coli at 1.8a resolution
Author: l. satyanarayana, s. eswaramoorthy, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: transferase,pfkb family,sugar kinase ydjh, nysgxrc,11206a,psi2,, structural genomics, protein structure initiative, new york sgx research center for structural genomics, kinase
- 3h4a.pdb.
transferase 18-apr-09 3h4a
He Cl Hg Mg Ho
Title: crystal structure of e. coli hppk complexed with mgampcpp and oxidation products of 6-hydroxymethyl-7,8-dihydropterin
Author: j. blaszczyk, x. ji
Keywords: folate biosynthesis, kinase, transferase
- 3h4u.pdb.
hydrolase 21-apr-09 3h4u
Zn
Title: crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea
Author: a. a. fedorov, e. v. fedorov, r. toro, f. m. raushel, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: signature of zn ligands, structural genomics, nysgxrc, target 9236e, psi-2, protein structure initiative, new york sgx research center for structural genomics
- 3kin.pdb.
motor protein 25-aug-97 3kin
Title: kinesin (dimeric) from rattus norvegicus
Author: f. kozielski, s. sack, a. marx, m. thormahlen, e. schonbrunn, v. biou, a. thompson, e. -m. mandelkow, e. mandelkow
Keywords: cytoskeleton
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www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS