Recent PDB releases or updates: week of 13 March 2009

1vpd.pdb. oxidoreductase 22-oct-04 1vpd Cl Se
Title: x-ray crystal structure of tartronate semialdehyde reductase [salmonella typhimurium lt2]
Author: j. osipiuk, m. zhou, s. moy, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg, protein structure initiative, reductase, tartronate, psi, midwest center for structural genomics, oxidoreductase
2ai6.pdb. hydrolase 29-jul-05 2ai6 He Hg (solution NMR)
Title: solution structure of human phosphohistidine phosphatase 1
Author: w. gong, g. cui, c. jin, b. xia
Keywords: hydrolase
2evr.pdb. structural genomics, unknown function 31-oct-05 2evr Cl Na Se
Title: crystal structure of (53686717) from nostoc punctiforme pcc 73102 at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg, unknown function
2fg0.pdb. structural genomics, unknown function 20-dec-05 2fg0 Se
Title: crystal structure of (53686717) from nostoc punctiforme pcc 73102 at 1.79 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, unknown function
2fna.pdb. structural genomics, unknown function 10-jan-06 2fna Mg Se
Title: crystal structure of (13814777) from sulfolobus solfataricus at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, unknown function
2hbw.pdb. structural genomics, unknown function 14-jun-06 2hbw Se
Title: crystal structure of nlp/p60 (yp_323898.1) from anabaena variabilis atcc 29413 at 1.05 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: nlp/p60, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg, unknown function
2jzd.pdb. viral protein 04-jan-08 2jzd He Hg (solution NMR)
Title: nmr structure of the domain 527-651 of the sars-cov nonstructural protein nsp3
Author: a. chatterjee, m. a. johnson, p. serrano, b. pedrini, j. joseph, k. saikatendu, b. neuman, r. c. stevens, i. a. wilson, m. j. buchmeier, p. kuhn, k. wuthrich, joint center for structural genomics (jcsg)
Keywords: protease, ribosomal frameshift, rna replication, rna-binding, rna-directed rna polymerase, thiol protease, transferase, transmembrane, zinc, zinc- finger, viral protein
2jze.pdb. viral protein 04-jan-08 2jze He Hg (solution NMR)
Title: nmr structure of the domain 527-651 of the sars-cov nonstructural protein nsp3, single conformer closest to the mean coordinates of an ensemble of twenty energy minimized conformers
Author: a. chatterjee, m. a. johnson, p. serrano, b. pedrini, j. joseph, k. saikatendu, b. neuman, r. c. stevens, i. a. wilson, m. j. buchmeier, p. kuhn, k. wuthrich, joint center for structural genomics (jcsg)
Keywords: protease, ribosomal frameshift, rna replication, rna-binding, rna-directed rna polymerase, thiol protease, transferase, transmembrane, zinc, zinc- finger, viral protein
2jzf.pdb. viral protein 04-jan-08 2jzf He Hg (solution NMR)
Title: nmr structure of the domain 513-651 of the sars-cov nonstructural protein nsp3, single conformer closest to the mean coordinates of an ensemble of twenty energy minimized conformers
Author: a. chatterjee, m. a. johnson, p. serrano, b. pedrini, j. joseph, k. saikatendu, b. neuman, r. c. stevens, i. a. wilson, m. j. buchmeier, p. kuhn, k. wuthrich, joint center for structural genomics (jcsg)
Keywords: protease, ribosomal frameshift, rna replication, rna-binding, rna-directed rna polymerase, thiol protease, transferase, transmembrane, zinc, zinc- finger, viral protein
2k0j.pdb. metal binding protein 04-feb-08 2k0j He Hg La Ca (solution NMR)
Title: solution structure of cam complexed to drp1p
Author: i. bertini, c. luchinat, g. parigi, j. yuan, structural proteomics in europe (spine)
Keywords: drp1 peptide, acetylation, calcium, methylation, phosphoprotein, ubl conjugation, structural genomics, structural proteomics in europe, spine, metal binding protein
2k18.pdb. isomerase 22-feb-08 2k18 He Hg (solution NMR)
Title: solution structure of bb' domains of human protein disulfide isomerase
Author: a. y. denisov, p. maattanen, c. dabrowski, g. kozlov, d. y. thomas, k. gehring
Keywords: endoplasmic reticulum, disulfide bonds, protein folding, chaperone, isomerase, membrane, redox-active center
2k1f.pdb. unknown function 03-mar-08 2k1f He Hg (solution NMR)
Title: sumo-3 from drosophila melanogaster (dsmt3)
Author: d. kumar, j. r. misra, a. k. misra, j. chugh, s. sharma, r. v. hosur
Keywords: dsmt3, drosophila sumo, unknown function
2k1w.pdb. metal binding protein 17-mar-08 2k1w He Hg Ca (solution NMR)
Title: nmr solution structure of m-crystallin in calcium loaded form(holo).
Author: r. barnwal, m. jobby, k. devi, y. sharma, k. chary
Keywords: eye lens, archaea, protein, evolution, metal binding protein
2k1x.pdb. metal binding protein 17-mar-08 2k1x He Hg (solution NMR)
Title: nmr solution structure of m-crystallin in calcium free form (apo).
Author: r. barnwal, m. jobby, k. devi, y. sharma, k. chary
Keywords: eye lens, archaea, cataract, evolution, metal binding protein
2k3u.pdb. immune system 16-may-08 2k3u He Hg (solution NMR)
Title: structure of the tyrosine-sulfated c5a receptor n-terminus in complex with the immune evasion protein chips.
Author: j. h. ippel, a. bunschoten, j. kemmink, r. liskamp
Keywords: sulfated tyrosine, gpcr membrane protein c5ar, anaphylotoxin c5a, staphylococcus aureus, complement cascade, secreted, virulence, immune system
2k79.pdb. transferase 08-aug-08 2k79 He Hg (solution NMR)
Title: solution structure of the binary complex between the sh3 and sh2 domain of interleukin-2 tyrosine kinase
Author: a. h. andreotti, a. j. severin, d. b. fulton
Keywords: sh2, novel, cis, atp-binding, cell membrane, kinase, membrane, metal-binding, nucleotide-binding, phosphoprotein, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase, zinc, zinc-finger
2k7a.pdb. transferase 08-aug-08 2k7a He Hg (solution NMR)
Title: ensemble structures of the binary complex between the sh3 and sh2 domain of interleukin-2 tyrosine kinase.
Author: a. h. andreotti, a. j. severin, d. b. fulton
Keywords: sh2, novel, cis, atp-binding, cell membrane, kinase, membrane, metal-binding, nucleotide-binding, phosphoprotein, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase, zinc, zinc-finger
2k7j.pdb. hydrolase 12-aug-08 2k7j He Hg (solution NMR)
Title: human acylphosphatase(acph) surface charge-optimized
Author: a. v. gribenko, m. m. patel, j. liu, s. a. mccallum, c. wang, g. i. makhatadze
Keywords: acetylation, hydrolase
2k7k.pdb. hydrolase 13-aug-08 2k7k He Hg (solution NMR)
Title: human acylphosphatase (acph) common type
Author: a. v. gribenko, m. m. patel, j. liu, s. a. mccallum, c. wang, g. i. makhatadze
Keywords: acetylation, hydrolase
2k7r.pdb. replication 19-aug-08 2k7r He Hg Zn (solution NMR)
Title: n-terminal domain of the bacillus subtilis helicase-loading protein dnai
Author: k. v. loscha, k. jaudzems, c. ioannou, x. c. su, f. r. hill, g. otting, n. e. dixon, e. liepinsh
Keywords: helicase-loading protein, atp- binding, dna replication, nucleotide-binding, primosome
2k7s.pdb. transcription 20-aug-08 2k7s He Hg (solution NMR)
Title: human arnt c-terminal pas domain, 3 residue ib slip
Author: m. r. evans, p. b. card, k. h. gardner
Keywords: beta-strand slip, pas domain, activator, alternative splicing, dna-binding, nucleus, polymorphism, transcription, transcription regulation
2k9x.pdb. unknown function 27-oct-08 2k9x He Hg (solution NMR)
Title: solution structure of urm1 from trypanosoma brucei
Author: w. zhang, j. zhang, c. xu, t. wang, x. zhang, x. tu
Keywords: nmr, unknown function
2kae.pdb. transcription/dna 04-nov-08 2kae He Hg Ho Zn (solution NMR)
Title: data-driven model of med1:dna complex
Author: j. a. lowry, r. gamsjaeger, s. thong, w. hung, a. h. kwan, g. broitman- maduro, j. m. matthews, m. maduro, j. p. mackay
Keywords: gata-type, dna, transcription factor, metal- binding, zinc, zinc-finger, transcription/dna complex
2kcx.pdb. structural genomics, unknown function 30-dec-08 2kcx He Hg (solution NMR)
Title: solution nmr structure of kazal-1 domain of human follistatin-related protein 3 (fstl-3). northeast structural genomics target hr6186a.
Author: p. rossi, y. chiang, g. t. montelione, s. anderson, northeast structural genomics consortium (nesg)
Keywords: northeast structural genomics consortium, nesg, unknown function, nucleotide-binding protein
2kd2.pdb. apoptosis 01-jan-09 2kd2 He Hg (solution NMR)
Title: nmr structure of faim-ctd
Author: m. hemond, g. wagner
Keywords: beta sandwich, apoptosis
2ozx.pdb. hydrolase 27-feb-07 2ozx He Hg (solution NMR)
Title: solution structure of human phosphohistidine phosphatase 1 in phosphate free form
Author: w. gong, g. cui, c. jin, b. xia
Keywords: hydrolase
2qkx.pdb. transferase 11-jul-07 2qkx
Title: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium tuberculosis complex with n-acetyl glucosamine 1-phosphate
Author: z. zhang, c. j. squire, e. n. baker, tb structural genomics consortium (tbsgc)
Keywords: beta-helix, substrate complex, structural genomics, tb structural genomics consortium, tbsgc, transferase
2r6q.pdb. structural protein 06-sep-07 2r6q
Title: crystal structure of bcla-island construct
Author: b. w. han, b. r. herrin, c. l. turnbough jr. , m. d. cooper, i. a. wilson
Keywords: antigen, collagen-like glycoprotein, structural protein
2r9u.pdb. immune system 13-sep-07 2r9u
Title: crystal structure of lamprey variable lymphocyte receptor 2913 ectodomain
Author: b. w. han, b. r. herrin, j. choe, m. d. cooper, i. a. wilson
Keywords: vlr, leucine-rich repeat, lrr, receptor, immune system
2rlf.pdb. proton transport 11-jul-07 2rlf He Hg (solution NMR)
Title: proton channel m2 from influenza a in complex with inhibitor rimantadine
Author: j. j. chou, j. r. schnell
Keywords: proton channel, rimantadine, proton transport
2rnk.pdb. viral protein 11-jan-08 2rnk He Hg (solution NMR)
Title: nmr structure of the domain 513-651 of the sars-cov nonstructural protein nsp3
Author: a. chatterjee, m. a. johnson, p. serrano, b. pedrini, j. joseph, k. saikatendu, b. w. neuman, i. a. wilson, r. c. stevens, m. j. buchmeier, p. kuhn, k. wuthrich, joint center for structural genomics (jcsg)
Keywords: protease, ribosomal frameshift, rna replication, rna-binding, rna-directed rna polymerase, thiol protease, transferase, transmembrane, zinc, zinc- finger, viral protein
2vez.pdb. transferase 27-oct-07 2vez
Title: afgna1 crystal structure complexed with acetyl-coa and glucose-6p gives new insights into catalysis
Author: r. hurtado-guerrero, o. raimi, s. shepherd, d. m. f. van aalten
Keywords: acyltransferase, glucosamine-6-phosphate n-acetyltransferase (gna1) udp-glcnac biosynthetic pathway
2vi0.pdb. hydrolase 26-nov-07 2vi0
Title: lichenase ctlic26 in complex with a thio-oligosaccharide
Author: v. a. money, v. m. ducros, g. j. davies
Keywords: polysaccharide degradation, hydrolase, glycosidase, cellulose degradation, enzyme glycoside hydrolase lichenase beta glucanase gh26 g
2vjy.pdb. lyase 14-dec-07 2vjy Mg
Title: pyruvate decarboxylase from kluyveromyces lactis in complex with the substrate analogue methyl acetylphosphonate
Author: s. kutter, g. wille, m. s. weiss, s. konig
Keywords: magnesium, flavoprotein
2vk1.pdb. lyase 16-dec-07 2vk1 Mg
Title: crystal structure of the saccharomyces cerevisiae pyruvate decarboxylase variant d28a in complex with its substrate
Author: s. kutter, m. weik, m. s. weiss, s. konig
Keywords: branched-chain amino acid catabolism, substrate activation, thiamine diphosphate, magnesium, acetylation, metal-binding, decarboxylase
2vk8.pdb. lyase 17-dec-07 2vk8 Mg
Title: crystal structure of the saccharomyces cerevisiae pyruvate decarboxylase variant e477q in complex with its substrate
Author: s. kutter, m. weik, m. s. weiss, s. konig
Keywords: branched-chain amino acid catabolism, substrate activation, thiamine diphosphate, magnesium, acetylation, metal-binding, decarboxylase
2voc.pdb. electron transport 13-feb-08 2voc
Title: thioredoxin a active site mutants form mixed disulfide dimers that resemble enzyme-substrate reaction intermediate
Author: t. r. h. m. kouwen, j. andrell, r. schrijver, j. y. f. dubois, m. j. maher, s. iwata, e. p. carpenter, j. m. van dijl
Keywords: thioredoxin fold, electron transport, bacillus, homodimer, disulfide, transport, redox-active center
2vqp.pdb. viral protein 18-mar-08 2vqp
Title: structure of the matrix protein from human respiratory syncytial virus
Author: v. a. money, h. k. mcphee, j. m. sanderson, r. p. yeo
Keywords: viral matrix protein, peripheral membrane protein, rsv, virion, matrix protein, envelope protein
2vsz.pdb. apoptosis 01-may-08 2vsz
Title: crystal structure of the elmo1 ph domain
Author: d. komander, m. patel, d. barford, j. -f. cote
Keywords: pleckstrin homology, sh3-binding, phagocytosis, phosphoprotein, elmo, dock180, membrane, apoptosis, cytoplasm, alternative splicing, phosphoinositide binding, guanine nucleotide exchange factor
2vu5.pdb. transferase 21-may-08 2vu5
Title: crystal structure of pndk from bacillus anthracis
Author: g. misra, a. aggarwal, d. dube, m. s. zaman, y. singh, r. ramachandran
Keywords: nucleotide-binding, atp-binding, metal-binding, phosphoprotein, nucleotide metabolism, nucleoside diphosphate kinase, kinase, cytoplasm, magnesium, transferase
2vuq.pdb. rna 29-may-08 2vuq
Title: crystal structure of a human trnagly acceptor stem microhelix (derived from the gene sequence dg9990) at 1.18 angstroem resolution
Author: a. eichert, m. perbandt, a. schreiber, j. p. fuerste, c. betzel, v. a. erdmann, c. foerster
Keywords: rna, trna identity elements, glycyl-trna-synthetase (glyrs), isoacceptors, human trnagly, aminoacyl-trna-stem
2vye.pdb. hydrolase 23-jul-08 2vye
Title: crystal structure of the dnac-ssdna complex
Author: y. h. lo, k. l. tsai, y. j. sun, c. d. hsiao
Keywords: dna replication, nucleotide-binding, dnac, helicase, atp-binding
2vyf.pdb. hydrolase 23-jul-08 2vyf Au
Title: crystal structure of the dnac
Author: y. h. lo, k. l. tsai, y. j. sun, c. d. hsiao
Keywords: dna replication, nucleotide-binding, dnac, helicase, atp-binding
2w0t.pdb. transcription 10-oct-08 2w0t Hg Zn (solution NMR)
Title: solution structure of the fcs zinc finger domain of human lmbl2
Author: b. c. lechtenberg, m. d. allen, m. bycroft
Keywords: human lethal(3) malignant brain tumor 2 protein, alternative splicing, transcription regulation, metal-binding, phosphoprotein, polycomb group
2w27.pdb. signaling protein 24-oct-08 2w27 Ca
Title: crystal structure of the bacillus subtilis ykui protein, with an eal domain, in complex with substrate c-di-gmp and calcium
Author: s. padavattan, w. f. anderson, t. schirmer
Keywords: signaling protein, structural genomics, psi, mcsg, eal domain, ykui protein, cyclic di-gmp
2w3c.pdb. transport protein 11-nov-08 2w3c
Title: globular head region of the human general vesicular transport factor p115
Author: h. striegl, y. roske, d. kummel, u. heinemann,
Keywords: coiled coil, armadillo fold, golgi apparatus, er-golgi transport, endoplasmatic reticulum, p115, golgi, uso1p, golgin, membrane, cytoplasm, transport protein
2w3d.pdb. transferase 12-nov-08 2w3d Fe Ca Se
Title: structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
2w3e.pdb. transferase 12-nov-08 2w3e Fe Ca
Title: oxidized structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
2w3f.pdb. transferase 12-nov-08 2w3f Fe
Title: reduced structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
2w3g.pdb. transferase 12-nov-08 2w3g Fe Ca
Title: air-oxidized structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
2w3h.pdb. transferase 12-nov-08 2w3h Fe Ca
Title: cyanide bound structure of the first gaf domain of mycobacterium tuberculosis doss
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: mycobacterium tuberculosis, heme, kinase, hypoxia, gaf domain, transferase
2w5e.pdb. hydrolase 10-dec-08 2w5e Cl Cd
Title: structural and biochemical analysis of human pathogenic astrovirus serine protease at 2.0 angstrom resolution
Author: s. speroni, j. rohayem, s. nenci, d. bonivento, i. robel, j. barthel, b. coutard, b. canard, a. mattevi
Keywords: transmembrane, thiol protease, rna replication, ribosomal frameshifting, serine protease, catalytic triad, protease, membrane, hydrolase, antiviral, astrovirus
2w79.pdb. isomerase 21-dec-08 2w79 Cl
Title: establishing wild-type levels of catalytic activity on natural and artificial (ba)8-barrel protein scaffolds
Author: j. claren, c. malisi, b. hocker, r. sterner
Keywords: isomerase, histidine biosynthesis, amino-acid biosynthesis
2w7y.pdb. sugar-binding protein 06-jan-09 2w7y I Se
Title: structure of a streptococcus pneumoniae solute-binding protein in complex with the blood group a-trisaccharide.
Author: m. higgins, d. w. abbott, m. j. boulanger, a. b. boraston
Keywords: solute-binding protein, streptococcus pneumoniae, blood group antigen, carbohydrate transport
2w8a.pdb. membrane protein 15-jan-09 2w8a Se
Title: crystal structure of the sodium-coupled glycine betaine symporter betp from corynebacterium glutamicum with bound substrate
Author: s. ressl, a. c. terwisscha van scheltinga, c. vonrhein, v. ott, c. ziegler
Keywords: trimer, membrane, transport, cell membrane, membrane protein, secondary transporter, sodium coupled transport, transmembrane, betaine transport, hyperosmotic stress
2w96.pdb. cell cycle 21-jan-09 2w96
Title: crystal structure of cdk4 in complex with a d-type cyclin
Author: p. j. day, a. cleasby, i. j. tickle, m. o. reilly, j. e. coyle, f. p. holding, r. l. mcmenamin, j. yon, r. chopra, c. lengauer, h. jhoti
Keywords: oncology, cell cycle, drug desgn
2w99.pdb. cell cycle 22-jan-09 2w99
Title: crystal structure of cdk4 in complex with a d-type cyclin
Author: p. j. day, a. cleasby, i. j. tickle, m. o. reilly, j. e. coyle, f. p. holding, r. l. mcmenamin, j. yon, r. chopra, c. lengauer, h. jhoti
Keywords: oncology, cell cycle, drug desgn
2w9d.pdb. immune system 23-jan-09 2w9d Ca
Title: structure of fab fragment of the icsm 18 - anti-prp therapeutic antibody at 1.57 a resolution.
Author: s. v. antonyuk, c. r. trevitt, r. w. strange, g. s. jackson, d. sangar, m. batchelor, s. jones, t. georgiou, s. cooper, c. fraser, a. khalili-shirazi, a. r. clarke, s. s. hasnain, j. collinge
Keywords: prion, prp, fab
2w9e.pdb. immune system 23-jan-09 2w9e
Title: structure of icsm 18 (anti-prp therapeutic antibody) fab fragment complexed with human prp fragment 119-231
Author: s. v. antonyuk, c. r. trevitt, r. w. strange, g. s. jackson, d. sangar, m. batchelor, s. jones, t. georgiou, s. cooper, c. fraser, a. khalili-shirazi, a. r. clarke, s. s. hasnain, j. collinge
Keywords: prp, prion, membrane, gpi-anchor, lipoprotein, golgi apparatus, disease mutation, immune system, polymorphism, glycoprotein, cell membrane
2w9f.pdb. cell cycle 23-jan-09 2w9f
Title: crystal structure of cdk4 in complex with a d-type cyclin
Author: p. j. day, a. cleasby, i. j. tickle, m. o. reilly, j. e. coyle, f. p. holding, r. l. mcmenamin, j. yon, r. chopra, c. lengauer, h. jhoti
Keywords: oncology, cell cycle, drug desgn
2w9z.pdb. transferase 30-jan-09 2w9z
Title: crystal structure of cdk4 in complex with a d-type cyclin
Author: p. j. day, a. cleasby, i. j. tickle, m. o. reilly, j. e. coyle, f. p. holding, r. l. mcmenamin, j. yon, r. chopra, c. lengauer, h. jhoti
Keywords: cyclin dependent kinase, transferase oncology, cell cycle, drug design
2wa0.pdb. immune system 31-jan-09 2wa0
Title: crystal structure of the human magea4
Author: a. k. roos, c. d. o. cooper, e. ugochukwu, w. w yue, g. berridge, j. m. elkins, a. c. w. pike, j. bray, p. filippakopoulos, j. muniz, a. chaikuad, n. burgess-brown, c. h. arrowsmith, j. weigelt, a. edwards, c. bountra, f. von delft, o. gileadi, u. oppermann
Keywords: multiple anomalous dispersion, cancer/testis antigen 1.4, melanoma antigen family a 4, ct1.4, mage-41, mage-x2, polymorphism, tumor antigen, melanoma-associated antigen 4
2wah.pdb. immune system 06-feb-09 2wah
Title: crystal structure of an igg1 fc glycoform (man9glcnac2)
Author: m. crispin, t. a. bowden, c. h. coles, k. harlos, a. r. aricescu, d. j. harvey, d. i. stuart, e. y. jones
Keywords: chromosomal rearrangement, antibody engineering, immunoglobulin domain, secreted, antibody, kifunensine, glycoprotein, oligomannose, immune system, glycosylation
2zae.pdb. hydrolase 04-oct-07 2zae Zn
Title: crystal structure of protein ph1601p in complex with protein ph1771p of archaeal ribonuclease p from pyrococcus horikoshii ot3
Author: t. honda, y. kakuta, m. kimura
Keywords: hetero dimer, hydrolase, trna processing
2zj9.pdb. hydrolase 29-feb-08 2zj9 Na
Title: x-ray crystal structure of ampc beta-lactamase (ampc(d)) from an escherichia coli with a tripeptide deletion (gly286 ser287 asp288) on the h10 helix
Author: y. yamaguchi, g. sato, y. yamagata, j. wachino, y. arakawa, h. kurosaki
Keywords: tripeptide deletion, hydrolase
2zjo.pdb. hydrolase 07-mar-08 2zjo
Title: crystal structure of hepatitis c virus ns3 helicase with a novel inhibitor
Author: s. h. liaw, s. j. chen, c. y. hu, w. k. chi, i. d. chu, l. h. hwang, j. w. chern, d. s. chen
Keywords: structure-based drug design, hydrolase
2zjt.pdb. isomerase 10-mar-08 2zjt
Title: crystal structure of dna gyrase b' domain sheds lights on the mechanism for t-segment navigation
Author: g. s. fu, d. y. zhu, y. l. hu, d. c. wang
Keywords: gyrb-ctd, toprim, tail, dna topoisomerase ii, g- segment, t-segment, atp-binding, nucleotide-binding
2zsp.pdb. oxygen transport 17-sep-08 2zsp Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [300 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
2zsr.pdb. oxygen transport 17-sep-08 2zsr Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [450 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
2zt2.pdb. oxygen transport 18-sep-08 2zt2 Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [600 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
2zt3.pdb. oxygen transport 18-sep-08 2zt3 Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [750 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
2zt4.pdb. oxygen transport 18-sep-08 2zt4 Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [810 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
2zu0.pdb. biosynthetic protein/protein binding 11-oct-08 2zu0
Title: crystal structure of sufc-sufd complex involved in the iron- sulfur cluster biosynthesis
Author: k. wada
Keywords: abc-atpase, atp-binding, cytoplasm, nucleotide-binding, transport, biosynthetic protein/protein binding complex
2zvr.pdb. isomerase 14-nov-08 2zvr
Title: crystal structure of a d-tagatose 3-epimerase-related protein from thermotoga maritima
Author: h. sakuraba, t. ohshima
Keywords: thermotoga maritima, ketohexose 3- epimerase, d-tagatose 3-epimerase, isomerase
2zyq.pdb. oxidoreductase 28-jan-09 2zyq Fe
Title: crystal structure of the hsac extradiol dioxygenase from m. tuberculosis
Author: i. d'angelo, k. yam, l. eltis, n. j. strynadka
Keywords: extradiol, dhsa, tb, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism, iron, oxidoreductase
2zzy.pdb. transferase 28-feb-09 2zzy
Title: crystal structure of apo form of yeast guanylate kinase n168a mutant at 1.90 angstrom resolution
Author: j. blaszczyk, h. yan, x. ji
Keywords: domain movement, substrate specificity, point mutation, acetylation, atp-binding, kinase, nucleotide-binding, phosphoprotein, transferase
2zzz.pdb. transferase 28-feb-09 2zzz Cl Mg
Title: crystal structure of apo form of yeast guanylate kinase e69d mutant at 1.82 angstrom resolution
Author: j. blaszczyk, h. yan, x. ji
Keywords: domain movement, substrate specificity, point mutation, acetylation, atp-binding, kinase, nucleotide-binding, phosphoprotein, transferase
3a00.pdb. transferase 28-feb-09 3a00
Title: crystal structure of dimeric form of guanylate kinase from yeast determined at 1.80 angstrom resolution
Author: j. blaszczyk, h. yan, x. ji
Keywords: domain movement, dimerization, acetylation, atp-binding, kinase, nucleotide-binding, phosphoprotein, transferase
3buj.pdb. metal binding protein 02-jan-08 3buj Fe
Title: crystal structure of calo2
Author: j. g. mccoy, h. d. johnson, s. singh, c. a. bingman, j. s. thorson, g. n. phillips
Keywords: heme, iron, metal-binding, monooxygenase, oxidoreductase, metal binding protein
3bzg.pdb. hydrolase 18-jan-08 3bzg
Title: uvde ph4.4
Author: e. m. meulenbroek, k. paspaleva, e. a. j. thomassen, j. p. abrahams, n. goosen, n. s. pannu
Keywords: uvde, dna repair, endonuclease, plasmid, hydrolase
3bzj.pdb. hydrolase 18-jan-08 3bzj Mn
Title: uvde k229l
Author: e. m. meulenbroek, k. paspaleva, e. a. j. thomassen, j. p. abrahams, n. goosen, n. s. pannu
Keywords: endonuclease, dna repair, tim barrel, plasmid, hydrolase
3c0l.pdb. hydrolase 21-jan-08 3c0l
Title: uvde k229r
Author: e. m. meulenbroek, k. paspaleva, e. a. j. thomassen, j. p. abrahams, n. goosen, n. s. pannu
Keywords: tim barrel, endonuclease, dna repair, plasmid, hydrolase
3c0q.pdb. hydrolase 21-jan-08 3c0q Mn
Title: uvde e175a
Author: e. m. meulenbroek, k. paspaleva, e. a. j. thomassen, j. p. abrahams, n. goosen, n. s. pannu
Keywords: tim barrel, endonuclease, dna repair, plasmid, hydrolase
3c0s.pdb. hydrolase 21-jan-08 3c0s Mn Na Se
Title: uvde 3 metals
Author: e. m. meulenbroek, k. paspaleva, e. a. j. thomassen, j. p. abrahams, n. goosen, n. s. pannu
Keywords: endonuclease, tim barrel, dna repair, plasmid, hydrolase
3c9i.pdb. viral protein 15-feb-08 3c9i Cl Ca Xe
Title: structure of p22 tail-needle gp26 bound to xenon gas
Author: g. cingolani, a. s. olia
Keywords: tail-needle, xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein
3cch.pdb. immune system 25-feb-08 3cch
Title: h-2db complex with murine gp100
Author: d. badia-martinez, a. achour
Keywords: glycoprotein, immune response, membrane, mhc i, transmembrane, disease mutation, melanin biosynthesis, immune system
3cfa.pdb. fluorescent protein 03-mar-08 3cfa
Title: anemonia sulcata red fluorescent protein asrfp
Author: g. s. kachalova, s. gundel, j. wiedenmann, h. d. bartunik
Keywords: fluorescent protein
3cff.pdb. fluorescent protein 03-mar-08 3cff
Title: photoswitchable red fluorescent protein psrfp, on-state
Author: g. s. kachalova, s. gundel, h. d. bartunik, j. wiedenmann
Keywords: beta can, chromophore, photoactivation, fluorescent protein
3cfh.pdb. fluorescent protein 03-mar-08 3cfh
Title: photoswitchable red fluorescent protein psrfp, off-state
Author: g. s. kachalova, s. gundel, h. d. bartunik, j. wiedenmann
Keywords: beta can, chromophore, photoactivation, fluorescent protein
3cfo.pdb. transferase 04-mar-08 3cfo
Title: triple mutant apo structure
Author: j. wang, d. klimenko, m. wang, t. a. steitz, w. h. konigsberg
Keywords: half-closed, open, closed, base selectivity, dna replication, dna-binding, dna-directed dna polymerase, exonuclease, hydrolase, nuclease, nucleotidyltransferase, transferase
3cfp.pdb. transferase/dna 04-mar-08 3cfp Cl Ca
Title: structure of the replicating complex of a pol alpha family dna polymerase, ternary complex 1
Author: j. wang, d. klimenko, m. wang, t. a. steitz, w. h. konigsberg
Keywords: transferase/dna complex
3cfr.pdb. transferase/dna 04-mar-08 3cfr Cl Ca
Title: structure of the replicating complex of a pol alpha family dna polymerase, ternary complex 2
Author: j. wang, d. klimenko, m. wang, t. a. steitz, w. h. konigsberg
Keywords: catalytic complex, fidelity, two metal ion mechanism, transferase/dna complex
3cfx.pdb. transport protein 04-mar-08 3cfx Mg W
Title: crystal structure of m. acetivorans periplasmic binding protein moda/wtpa with bound tungstate
Author: m. comellas-bigler, k. hollenstein, k. p. locher
Keywords: binding protein, molybdate, tungstate, ligand, crystal structure, unknown function, transport protein
3cfz.pdb. transport protein 04-mar-08 3cfz W
Title: crystal structure of m. jannaschii periplasmic binding protein moda/wtpa with bound tungstate
Author: m. comellas-bigler, k. hollenstein, k. p. locher
Keywords: binding protein, molybdate, tungstate, ligand, crystal structure, unknown function, transport protein
3cg1.pdb. transport protein 04-mar-08 3cg1 W
Title: crystal structure of p. furiosus periplasmic binding protein moda/wtpa with bound tungstate
Author: m. comellas-bigler, k. hollenstein, k. p. locher
Keywords: binding protein, molybdate, tungstate, ligand, crystal structure, unknown function, transport protein
3cg3.pdb. transport protein 04-mar-08 3cg3 W
Title: crystal structure of p. horikoshii periplasmic binding protein moda/wtpa with bound tungstate
Author: m. comellas-bigler, k. hollenstein, k. p. locher
Keywords: binding protein, molybdate, tungstate, ligand, crystal structure, unknown function, transport protein
3cgm.pdb. isomerase 06-mar-08 3cgm Ni
Title: crystal structure of thermophilic slyd
Author: c. loew, p. neumann, m. t. stubbs, j. balbach
Keywords: chaperone function, two domain protein, rotamase
3cgn.pdb. isomerase 06-mar-08 3cgn
Title: crystal structure of thermophilic slyd
Author: p. neumann, c. loew, m. t. stubbs, j. balbach
Keywords: prolyl cis trans isomerase, chaperone, rotamase
3cij.pdb. transport protein 11-mar-08 3cij W
Title: crystal structure of a. fulgidus periplasmic binding protein moda/wtpa with bound tungstate
Author: m. comellas-bigler, k. hollenstein, k. p. locher
Keywords: unknown function, metal binding protein, transport protein
3clj.pdb. rna binding protein 19-mar-08 3clj
Title: structure of the rna polymerase ii ctd-interacting domain of nrd1
Author: l. vasiljeva, m. kim, h. mutschler, s. buratowski, a. meinhart
Keywords: nucleus, phosphoprotein, rna polymerase ii binding protein, rna binding protein
3cn7.pdb. hydrolase 25-mar-08 3cn7
Title: crystal structure analysis of the carboxylesterase pa3859 from pseudomonas aeruginosa pao1- monoclinic crystal form
Author: a. pesaresi, d. lamba
3cn9.pdb. hydrolase 25-mar-08 3cn9
Title: crystal structure analysis of the carboxylesterase pa3859 from pseudomonas aeruginosa pao1- orthorhombic crystal form
Author: d. lamba, a. pesaresi
3cwk.pdb. transport protein 22-apr-08 3cwk
Title: crystal structure of the r132k:y134f:r111l:t54v:l121e mutant of cellular retinoic acid binding protein type ii in complex with all-trans-retinoic acid at 1.57 angstroms resolution
Author: s. vaezeslami, j. h. geiger
Keywords: retinoic acid, retinoids, beta barrel, crystallography, x-ray, high resolution, cytoplasm, nucleus, retinol-binding, transport, vitamin a, transport protein
3czc.pdb. transferase 29-apr-08 3czc Se
Title: the crystal structure of a putative pts iib(ptxb) from streptococcus mutans
Author: j. lei, x. d. su
Keywords: phosphotransferase system, transferase, transport
3d36.pdb. transferase/transferase inhibitor 09-may-08 3d36 Mg
Title: how to switch off a histidine kinase: crystal structure of geobacillus stearothermophilus kinb with the inhibitor sda
Author: m. j. bick, v. lamour, k. r. rajashankar, y. gordiyenko, c. v. robinson, s. a. darst
Keywords: four helix bundle, class i two-component histidine kinase, kinase, phosphoprotein, transferase, two- component regulatory system, transferase/transferase inhibitor complex
3d8v.pdb. transferase 25-may-08 3d8v
Title: crystal structure of glmu from mycobacterium tuberculosis in complex with uridine-diphosphate-n-acetylglucosamine
Author: z. zhang, c. j. squire, e. n. baker
Keywords: acyltransferase, cell shape, cell wall biogenesis/degradation, cytoplasm, magnesium, metal- binding, multifunctional enzyme, nucleotidyltransferase, peptidoglycan synthesis
3d95.pdb. transport protein 26-may-08 3d95
Title: crystal structure of the r132k:y134f:r111l:l121e:t54v mutant of apo-cellular retinoic acid binding protein type ii at 1.20 angstroms resolution
Author: s. vaezeslami, j. h. geiger
Keywords: retinoic acid, retinoids, beta barrel, crystallography, x-ray, high resolution, mutant, cytoplasm, nucleus, retinol-binding, transport, vitamin a, transport protein
3d96.pdb. transport protein 26-may-08 3d96
Title: crystal structure of the r132k:y134f mutant of apo-cellular retinoic acid binding protein type ii at 1.71 angstroms resolution
Author: s. vaezeslami, j. h. geiger
Keywords: retinoic acid, retinoids, beta barrel, crystallography, x-ray, high resolution, mutant, cytoplasm, nucleus, retinol-binding, transport, vitamin a, transport protein
3d98.pdb. transferase 27-may-08 3d98
Title: crystal structure of glmu from mycobacterium tuberculosis, ligand-free form
Author: z. zhang, c. j. squire, e. n. baker
Keywords: peptidoglycan synthesis
3dl8.pdb. protein transport 26-jun-08 3dl8
Title: structure of the complex of aquifex aeolicus secyeg and bacillus subtilis seca
Author: y. nam, j. zimmer, t. a. rapoport
Keywords: atp-binding, cell membrane, cytoplasm, membrane, metal-binding, nucleotide-binding, protein transport, translocation, transport, zinc, transmembrane
3dla.pdb. ligase 26-jun-08 3dla
Title: x-ray crystal structure of glutamine-dependent nad+ synthetase from mycobacterium tuberculosis bound to naad+ and don
Author: n. a. laronde-leblanc, m. resto, b. gerratana
Keywords: nad+ synthetase, ammonia tunneling, enzyme, glutamine-dependent nad+ synthetase, glutamine-amido transferase, atp-binding, ligase, nad, nucleotide-binding
3dp9.pdb. hydrolase 07-jul-08 3dp9 I
Title: crystal structure of vibrio cholerae 5'- methylthioadenosine/s-adenosyl homocysteine nucleosidase (mtan) complexed with butylthio-dadme-immucillin a
Author: v. l. schramm, s. c. almo, a. rinaldo-matthis, t. crowder, j. a. gutierrez, m. ho
Keywords: butylthio dadme immucillin a, mtan, hydrolase
3dpo.pdb. chaperone, peptide binding protein 09-jul-08 3dpo
Title: crystal structure of the substrate binding domain of e. coli dnak in complex with a short pyrrhocoricin-derived inhibitor peptide
Author: a. roujeinikova
Keywords: peptide binding protein
3dpp.pdb. chaperone, peptide binding protein 09-jul-08 3dpp
Title: crystal structure of the substrate binding domain of e. coli dnak in complex with a long pyrrhocoricin-derived inhibitor peptide (form a)
Author: a. roujeinikova
Keywords: peptide binding protein
3dpq.pdb. chaperone, peptide binding protein 09-jul-08 3dpq
Title: crystal structure of the substrate binding domain of e. coli dnak in complex with a long pyrrhocoricin-derived inhibitor peptide (form b)
Author: a. roujeinikova
Keywords: peptide binding protein
3dqy.pdb. oxidoreductase 10-jul-08 3dqy Fe
Title: crystal structure of toluene 2,3-dioxygenase ferredoxin
Author: r. friemann, k. lee, e. n. brown, d. t. gibson, h. eklund, s. ramaswamy
Keywords: iron-sulfur cluster, 2fe-2s, aromatic hydrocarbons catabolism, electron transport, iron, iron-sulfur, metal- binding, transport, oxidoreductase
3dso.pdb. metal binding protein 13-jul-08 3dso Cu
Title: crystal structure of cu(i) bound copper resistance protein copk
Author: m. -r. ash, m. j. maher
Keywords: periplasm, copper resistance, plasmid, metal binding protein
3dsp.pdb. metal binding protein 13-jul-08 3dsp
Title: crystal structure of apo copper resistance protein copk
Author: m. -r. ash, m. j. maher
Keywords: periplasm, copper resistance, plasmid, metal binding protein
3duy.pdb. hydrolase 18-jul-08 3duy
Title: crystal structure of human beta-secretase in complex with nvp-afj144
Author: j. -m. rondeau
Keywords: bace1, memapsin2, enzyme inhibitor complex, alzheimer's disease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, protease, transmembrane, zymogen
3dv1.pdb. hydrolase 18-jul-08 3dv1
Title: crystal structure of human beta-secretase in complex with nvp-arv999
Author: j. -m. rondeau
Keywords: bace1, memapsin2, aspartic protease, enzyme inhibitor complex, alzheimer's disease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen
3dv5.pdb. hydrolase 18-jul-08 3dv5
Title: crystal structure of human beta-secretase in complex with nvp-bav544
Author: j. -m. rondeau
Keywords: memapsin2, bace1, aspartic protease, alzheimer's disease, enzyme inhibitor complex, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen
3dwn.pdb. lipid transport 22-jul-08 3dwn
Title: crystal structure of the long-chain fatty acid transporter fadl mutant a77e/s100r
Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
Keywords: outer membrane protein, lipid transport, membrane, outer membrane, phage recognition, transmembrane, transport
3dwo.pdb. membrane protein 22-jul-08 3dwo
Title: crystal structure of a pseudomonas aeruginosa fadl homologue
Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
Keywords: outer membrane protein
3dwz.pdb. hydrolase 23-jul-08 3dwz
Title: meropenem covalent adduct with tb beta-lactamase
Author: l. w tremblay, j. e. hugonnet, j. s. blanchard
Keywords: protein-covalent adduct, antibiotic resistance, hydrolase, lipoprotein, membrane, palmitate
3dz2.pdb. lyase 29-jul-08 3dz2
Title: human adometdc with 5'-[(3-aminopropyl)methylamino]-5'deoxy- 8-methyladenosine
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
3dz3.pdb. lyase 29-jul-08 3dz3
Title: human adometdc f223a mutant with covalently bound s- adenosylmethionine methyl ester
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
3dz4.pdb. lyase 29-jul-08 3dz4
Title: human adometdc with 5'-[(2-carboxamidoethyl)methylamino]-5'- deoxy-8-methyladenosine
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
3dz5.pdb. lyase 29-jul-08 3dz5
Title: human adometdc with covalently bound 5'-[(2-aminooxyethyl) methylamino]-5'-deoxy-8-methyladenosine
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen, ligase
3dz6.pdb. lyase 29-jul-08 3dz6
Title: human adometdc with 5'-[(4-aminooxybutyl)methylamino]- 5'deoxy-8-ethyladenosine
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
3dz7.pdb. ligase 29-jul-08 3dz7
Title: human adometdc with 5'-[(carboxamidomethyl)methylamino]-5'- deoxy-8-methyladenosine
Author: s. bale, d. e. mccloskey, a. e. pegg, j. a. secrist iii, w. c. guida, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen, ligase
3e2p.pdb. transferase 06-aug-08 3e2p
Title: catalytic subunit of m. jannaschii aspartate transcarbamoylase in an orthorhombic crystal form
Author: j. vitali, m. j. colaneri
Keywords: atcase, pyrimidine biosynthesis, thermostability, methanococcus jannaschii, crystal structure, transferase
3e30.pdb. transferase 06-aug-08 3e30 Zn
Title: protein farnesyltransferase complexed with fpp and ethylene diamine inhibitor 4
Author: m. a. hast, l. s. beese
Keywords: ftase, malaria, antimalarial, plasmodium, falciparum, ethylenediamine, prenyltransferase, transferase, metal-binding, phosphoprotein, zinc
3e32.pdb. transferase 06-aug-08 3e32 Zn
Title: protein farnesyltransferase complexed with fpp and ethylenediamine scaffold inhibitor 2
Author: m. a. hast, l. s. beese
Keywords: farnesyltransferase, protein farnesyltransferase, malaria, antimalarial, ethylenediamine, inhibitor, plasmodium, falciparum, prenyltransferase, transferase, metal-binding, phosphoprotein, zinc
3e33.pdb. transferase 06-aug-08 3e33 Zn
Title: protein farnesyltransferase complexed with fpp and ethylenediamine scaffold inhibitor 7
Author: m. a. hast, l. s. beese
Keywords: protein farnesyltransferase, farnesyltransferase, malaria, plasmodium, falciparum, antimalarial, inhibitor, ethylenediamine, prenyltransferase, transferase, metal- binding, phosphoprotein, zinc
3e34.pdb. transferase 06-aug-08 3e34 Zn
Title: protein farnesyltransferase complexed with fpp and ethylenediamine-scaffold inhibitor 10
Author: m. a. hast, l. s. beese
Keywords: protein farnesyltransferase, farnesyltransferase, malaria, plasmodium, falciparum, antimalarial, ethylenediamine, prenyltransferase, transferase, metal- binding, phosphoprotein, zinc
3e37.pdb. transferase 06-aug-08 3e37 Zn
Title: protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5
Author: m. a. hast, l. s. beese
Keywords: farnesyltransferase, protein farnesyltransferase, malaria, plasmodium, falciparum, ethylenediamine, prenyltransferase, transferase, metal-binding, phosphoprotein, zinc
3e5i.pdb. oxygen transport 14-aug-08 3e5i Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser off
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
3e6k.pdb. hydrolase 15-aug-08 3e6k B Mn
Title: x-ray structure of human arginase i: the mutant d183a in complex with abh
Author: l. di costanzo, d. w. christianson
Keywords: amino acid recognition, abh, alternative splicing, arginine metabolism, cytoplasm, disease mutation, hydrolase, manganese, metal-binding, phosphoprotein, polymorphism, urea cycle
3e6v.pdb. hydrolase 16-aug-08 3e6v B Mn
Title: x-ray structure of human arginase i-d183n mutant: the complex with abh
Author: l. di costanzo, d. w. christianson
Keywords: mutant, amino group recognition, alternative splicing, arginine metabolism, cytoplasm, disease mutation, hydrolase, manganese, metal-binding, phosphoprotein, polymorphism, urea cycle
3e6y.pdb. signaling protein 17-aug-08 3e6y Cl
Title: structure of 14-3-3 in complex with the differentiation- inducing agent cotylenin a
Author: c. ottmann, m. weyand, a. wittinghofer, c. oecking
Keywords: signaling protein
3e94.pdb. transcription 21-aug-08 3e94 Sn
Title: crystal structure of rxralpha ligand binding domain in complex with tributyltin and a coactivator fragment
Author: w. bourguet, a. le maire
Keywords: dna-binding, host-virus interaction, metal-binding, nucleus, polymorphism, receptor, transcription, transcription regulation, ubl conjugation, zinc, zinc-finger, activator, phosphoprotein
3ecz.pdb. oxygen transport 02-sep-08 3ecz Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [30 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
3edb.pdb. oxygen transport 03-sep-08 3edb Fe
Title: carbonmonoxy sperm whale myoglobin at 120 k: laser on [150 min]
Author: a. tomita, t. sato, k. ichiyanagi, s. nozawa, h. ichikawa, m. chollet, f. kawai, s. -y. park, s. koshihara, s. adachi
Keywords: myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
3eec.pdb. unknown function 04-sep-08 3eec Cd
Title: x-ray structure of human ubiquitin cd(ii) adduct
Author: g. falini, s. fermani, g. tosi, f. arnesano, g. natile
Keywords: ubiquitin, cadmium, adduct, cytoplasm, nucleus, phosphoprotein, ubl conjugation, unknown function
3ef6.pdb. oxidoreductase 08-sep-08 3ef6
Title: crystal structure of toluene 2,3-dioxygenase reductase
Author: r. friemann, k. lee, e. n. brown, d. t. gibson, h. eklund, s. ramaswamy
Keywords: nadh binding protein, aromatic hydrocarbons catabolism, fad, flavoprotein, nad, oxidoreductase
3ek4.pdb. fluorescent protein 18-sep-08 3ek4 Ca
Title: calcium-saturated gcamp2 monomer
Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
Keywords: gcamp2, calcium, cpgfp, calmodulin, m13 peptide, chromophore, luminescence, photoprotein, acetylation, methylation, phosphoprotein, ubl conjugation, signaling protein, fluorescent protein
3ek7.pdb. fluorescent protein 18-sep-08 3ek7 Ca
Title: calcium-saturated gcamp2 dimer
Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
Keywords: gcamp2, cpegfp, calcium, calmodulin, m13 peptide, acetylation, methylation, phosphoprotein, ubl conjugation, signaling protein, fluorescent protein
3ek8.pdb. fluorescent protein 19-sep-08 3ek8 Ca
Title: calcium-saturated gcamp2 t116v/g87r mutant monomer
Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
Keywords: calcium, gcamp2, cpegfp, calmodulin, m13 peptide, signaling protein, fluorescent protein
3ekh.pdb. fluorescent protein 19-sep-08 3ekh Ca
Title: calcium-saturated gcamp2 t116v/k378w mutant monomer
Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
Keywords: gcamp2, cpegfp, calcium, calmodulin, m13 peptide, signaling protein, fluorescent protein
3ekj.pdb. fluorescent protein 19-sep-08 3ekj
Title: calcium-free gcamp2 (calcium binding deficient mutant)
Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
Keywords: gcamp2, calcium, cpgfp, calmodulin, m13 peptide, apo gcamp2, calcium-free, signaling protein, fluorescent protein
3ekl.pdb. lyase 19-sep-08 3ekl Zn Na
Title: structural characterization of tetrameric mycobacterium tuberculosis fructose 1,6-bisphosphate aldolase - substrate binding and catalysis mechanism of a class iia bacterial aldolase
Author: s. pegan, k. rukseree, s. g. franzblau, a. d. mesecar
Keywords: 6-bisphosphate aldolase, zinc enzyme, mechanism, mycobacterium tuberculosis, dihydroxyacetone, glyceraldehyde-3-phosphate, aldol condensation, glycolysis, lyase, metal-binding, zinc
3ekz.pdb. lyase 19-sep-08 3ekz Zn Na
Title: structural characterization of tetrameric mycobacterium tuberculosis fructose 1,6-bisphosphate aldolase - substrate binding and catalysis mechanism of a class iia bacterial aldolase
Author: s. pegan, k. rukseree, s. g. franzblau, a. d. mesecar
Keywords: 6-bisphosphate aldolase, zinc enzyme, mechanism, mycobacterium tuberculosis, dihydroxyacetone, glyceraldehyde-3-phosphate, aldol condensation, glycolysis, lyase, metal-binding, zinc
3elf.pdb. lyase 22-sep-08 3elf Zn Na
Title: structural characterization of tetrameric mycobacterium tuberculosis fructose 1,6-bisphosphate aldolase - substrate binding and catalysis mechanism of a class iia bacterial aldolase
Author: s. pegan, k. rukseree, s. g. franzblau, a. d. mesecar
Keywords: 6-bisphosphate aldolase, zinc enzyme, mechanism, mycobacterium tuberculosis, dihydroxyacetone, glyceraldehyde-3-phosphate, aldol condensation, glycolysis, lyase, metal-binding, zinc
3eqt.pdb. rna binding protein/rna 01-oct-08 3eqt Zn
Title: crystal structure of human lgp2 c-terminal domain in complex with dsrna
Author: p. li, x. li
Keywords: rna binding protein/rna complex
3eqx.pdb. transcription regulator 01-oct-08 3eqx Se
Title: crystal structure of the fic (filamentation induced by camp) family protein so4266 (np_719793.1) from shewanella oneidensis mr-1 at 1.6 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, fic protein family, transcription regulator
3erb.pdb. hydrolase 01-oct-08 3erb
Title: the crystal structure of c2b, a fragment of complement component c2 produced during c3-convertase formation
Author: s. v. l. narayan, v. krishnan
Keywords: glycoprotein, hydrolase, immune response, innate immunity, polymorphism, protease, secreted, serine protease, sushi
3es5.pdb. virus 03-oct-08 3es5
Title: crystal structure of partitivirus (psv-f)
Author: j. pan, l. dong, l. lin, w. f. ochoa, r. s. sinkovits, w. m. havens, m. l. nibert, t. s. baker, s. a. ghabrial, y. j. tao
Keywords: rna virus, double stranded rna virus, dsrna virus, t=2, "t=2" capsid, icosahedral virus
3evs.pdb. cytokine/transferase receptor 13-oct-08 3evs
Title: crystal structure of the gdf-5:bmp receptor ib complex.
Author: a. kotzsch, t. d. mueller
Keywords: kinase, magnesium, manganese, membrane, metal-binding, nucleotide- binding, receptor, serine/threonine-protein kinase, transferase, transmembrane, cytokine/transferase receptor complex
3ex8.pdb. hydrolase, oxidoreductase 16-oct-08 3ex8 Zn
Title: complex structure of bacillus subtilis ribg reduction mechanism in riboflavin biosynthesis
Author: s. c. chen, y. h. lin, h. c. yu, s. h. liaw
Keywords: deaminase domain, reductase domain, metal- binding, multifunctional enzyme, nadp, riboflavin biosynthesis, zinc, hydrolase, oxidoreductase
3ezq.pdb. apoptosis 23-oct-08 3ezq Na
Title: crystal structure of the fas/fadd death domain complex
Author: r. schwarzenbacher, h. robinson, b. stec, s. j. riedl
Keywords: disc, fas, fadd, membrane,receptor, transmembrane
3f2a.pdb. transferase 29-oct-08 3f2a Mg
Title: crystal structure of human pim-1 in complex with dappa
Author: k. qian
Keywords: serine/threonine-protein kinase, transferase
3f3a.pdb. transport protein 30-oct-08 3f3a Na
Title: crystal structure of leut bound to l-tryptophan and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport protein
3f3c.pdb. transport protein 30-oct-08 3f3c F Na
Title: crystal structure of leut bound to 4-fluoro-l-phenylalanine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
3f3d.pdb. transport protein 30-oct-08 3f3d Na
Title: crystal structure of leut bound to l-methionine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
3f3e.pdb. transport protein 30-oct-08 3f3e Na
Title: crystal structure of leut bound to l-leucine (30 mm) and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
3f48.pdb. transport protein 31-oct-08 3f48 Na
Title: crystal structure of leut bound to l-alanine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, slc6, occluded, substrate, sodium- coupled, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
3f4i.pdb. transport protein 31-oct-08 3f4i Na Se
Title: crystal structure of leut bound to l-selenomethionine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: slc6, nss, sodium-couple, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
3f4j.pdb. transport protein 31-oct-08 3f4j Na
Title: crystal structure of leut bound to glycine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, slc6, sodium-coupled, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
3f5m.pdb. transferase 04-nov-08 3f5m Mg Na
Title: crystal structure of atp-bound phosphofructokinase from trypanosoma brucei
Author: i. w. mcnae, j. martinez-oyanedel, j. w. keillor, p. a. m. michels, l. a. fothergill-gilmore, m. d. walkinshaw
Keywords: glycolysis, atp binding, kinase activity, atp-binding, kinase, nucleotide-binding, transferase
3f73.pdb. nucleic acid binding protein/dna/rna 07-nov-08 3f73 Mg
Title: alignment of guide-target seed duplex within an argonaute silencing complex
Author: y. wang, h. li, g. sheng, s. juranek, t. tuschl, d. j. patel
Keywords: protein-dna-rna-complex, plasmid, nucleic acid binding protein/dna/rna complex
3f7p.pdb. structural protein/cell adhesion 10-nov-08 3f7p Ca
Title: crystal structure of a complex between integrin beta4 and plectin
Author: j. m. de pereda
Keywords: glycoprotein, membrane, polymorphism, receptor, transmembrane, structural protein/cell adhesion complex
3f7q.pdb. cell adhesion 10-nov-08 3f7q He Cl Hg
Title: first pair of fibronectin type iii domains and part of the connecting segment of the integrin beta4
Author: j. m. de pereda
Keywords: hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
3f7r.pdb. cell adhesion 10-nov-08 3f7r He Cl Hg
Title: first pair of fibronectin type iii domains and part of the connecting segment of the integrin beta4
Author: j. m. de pereda
Keywords: hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
3f7z.pdb. transferase 10-nov-08 3f7z F
Title: x-ray co-crystal structure of glycogen synthase kinase 3beta in complex with an inhibitor
Author: c. d. mol, d. r. dougan
Keywords: protein kinase, inhibitor co-crystal structure, alternative splicing, atp-binding, kinase, nucleotide- binding, phosphoprotein, serine/threonine-protein kinase, transferase, wnt signaling pathway
3f88.pdb. transferase 11-nov-08 3f88
Title: glycogen synthase kinase 3beta inhibitor complex
Author: c. d. mol, d. r. dougan
Keywords: protein kinase, inhibitor, alternative splicing, atp-binding, kinase, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase, transferase, wnt signaling pathway
3f9q.pdb. hydrolase 14-nov-08 3f9q
Title: re-refinement of uncomplexed plasmepsin ii from plasmodium falciparum.
Author: a. h. robbins, r. mckenna
Keywords: aspartyl protease, glycoprotein, protease, vacuole, zymogen
3f9r.pdb. isomerase 14-nov-08 3f9r Mg
Title: crystal structure of trypanosoma brucei phosphomannosemutase, tb.10.700.370
Author: a. k. wernimont, a. lam, a. ali, y. h. lin, l. guther, a. shamshad, f. mackenzie, g. bandini, i. kozieradzki, d. cossar, y. zhao, m. schapira, a. bochkarev, c. h. arrowsmith, c. bountra, j. weigelt, a. m. edwards, m. a. j. ferguson, r. hui, w. qiu, structural genomics consortium (sgc)
Keywords: isomerase, structural genomics consortium, sgc
3fdl.pdb. apoptosis 26-nov-08 3fdl
Title: bim bh3 peptide in complex with bcl-xl
Author: w. d. fairlie, e. f. lee, b. j. smith, p. e. czabotar, p. m. colman
Keywords: peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane, phosphoprotein
3fdm.pdb. apoptosis 26-nov-08 3fdm
Title: alpha/beta foldamer in complex with bcl-xl
Author: w. d. fairlie, e. f. lee, b. j. smith, p. e. czabotar, p. m. colman, j. d. sadowsky, k. j. peterson-kaufman, s. h. gellman
Keywords: helical bundle, foldamer, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane
3ffe.pdb. biosynthetic protein 03-dec-08 3ffe
Title: structure of achromobactin synthetase protein d, (acsd)
Author: s. a. mcmahon, h. liu, l. carter, m. oke, k. a. johnson, s. schmelz, g. l. challis, m. f. white, j. h. naismith, scottish structural proteomics facility (sspf)
Keywords: adenylating enzyme, siderophore, structural genomics, scottish structural proteomics facility, sspf, biosynthetic protein
3fhc.pdb. transport protein/hydrolase 09-dec-08 3fhc
Title: crystal structure of human dbp5 in complex with nup214
Author: h. von moeller, e. conti
Keywords: rna-binding, transport protein/hydrolase complex
3fht.pdb. hydrolase/rna 10-dec-08 3fht Mg
Title: crystal structure of human dbp5 in complex with amppnp and rna
Author: h. von moeller, e. conti
Keywords: membrane, mrna transport, nuclear pore complex, nucleotide-binding, nucleus, phosphoprotein, protein transport, rna-binding, translocation, transport, hydrolase/rna complex
3fir.pdb. protein binding 12-dec-08 3fir
Title: crystal structure of glycosylated k135e peb3
Author: tongpil min, allan matte, miroslaw cygler
Keywords: k135e, citrate, glycosylated, protein binding
3fj7.pdb. protein binding 14-dec-08 3fj7
Title: crystal structure of l-phospholactate bound peb3
Author: t. min, a. matte, m. cygler
Keywords: pep, protein binding
3fjg.pdb. transport protein 14-dec-08 3fjg
Title: crystal structure of 3pg bound peb3
Author: t. min, a. matte, m. cygler
Keywords: 3pg, transport protein
3fjm.pdb. transport protein 14-dec-08 3fjm
Title: crystal structure of phosphate bound peb3
Author: t. min, a. matte, m. cygler
Keywords: phosphate. crystal structure, transport protein
3fki.pdb. transcription 16-dec-08 3fki Mg Zn
Title: 12-subunit rna polymerase ii refined with zn-sad data
Author: p. a. meyer, p. ye, m. h. suh, m. zhang, j. fu
Keywords: ubl conjugation, zinc-finger, polymorphism, cytoplasm, dna damage, dna repair, mrna processing
3fla.pdb. hydrolase 18-dec-08 3fla Cl Se
Title: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic pathway - form 1
Author: j. l. smith, d. l. akey
3flb.pdb. hydrolase 18-dec-08 3flb Cl
Title: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic pathway - form 2
Author: j. l. smith, d. l. akey
3fld.pdb. hydrolase 18-dec-08 3fld
Title: crystal structure of the trai c-terminal domain
Author: l. m. guogas, s. a. kennedy, m. r. redinbo
Keywords: alternative initiation, atp- binding, conjugation, dna-binding, helicase, hydrolase, nucleotide-binding, plasmid, atp-binding
3fo8.pdb. viral protein 29-dec-08 3fo8
Title: crystal structure of the bacteriophage t4 tail sheath protein, protease resistant fragment gp18pr
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foa.pdb. viral protein 29-dec-08 3foa
Title: crystal structure of the bacteriophage t4 tail sheath protein, deletion mutant gp18m
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foh.pdb. viral protein 30-dec-08 3foh (electron microscopy)
Title: fitting of gp18m crystal structure into 3d cryo-em reconstruction of bacteriophage t4 extended tail
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foi.pdb. viral protein 30-dec-08 3foi (electron microscopy)
Title: fitting of gp18m crystal structure into 3d cryo-em reconstruction of bacteriophage t4 contracted tail
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3fqe.pdb. transferase 07-jan-09 3fqe
Title: crystal structure of spleen tyrosine kinase complexed with ym193306
Author: a. kuglstatter, a. g. villasenor
Keywords: transferase, tyrosine-protein kinase, ubl conjugation
3fqh.pdb. transferase 07-jan-09 3fqh
Title: crystal structure of spleen tyrosine kinase complexed with a 2-substituted 7-azaindole
Author: a. kuglstatter, a. g. villasenor
Keywords: tyrosine-protein kinase, ubl conjugation
3fqm.pdb. metal binding protein 07-jan-09 3fqm Zn
Title: crystal structure of a novel dimeric form of hcv ns5a domain i protein
Author: r. a. love
Keywords: ns5a, domain i, phosphoprotein, rna-binding, zinc, metal binding protein
3fqn.pdb. immune system 07-jan-09 3fqn Mg Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fqr.pdb. immune system 07-jan-09 3fqr Mg Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fqs.pdb. transferase 07-jan-09 3fqs F
Title: crystal structure of spleen tyrosine kinase complexed with r406
Author: a. kuglstatter, a. g. villasenor
Keywords: sh2 domain, transferase, tyrosine-protein kinase, ubl conjugation
3fqt.pdb. immune system 07-jan-09 3fqt Mg Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fqu.pdb. immune system 07-jan-09 3fqu Mg Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fqw.pdb. immune system 07-jan-09 3fqw Co Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fqx.pdb. immune system 07-jan-09 3fqx Mg Cd
Title: phosphorylation of self-peptides alters human leukocyte antigen class i-restricted antigen presentation and generates tumor specific epitopes
Author: j. petersen, j. rossjohn
Keywords: secreted, cancer, tcr, self-epitope
3fr2.pdb. lipid binding protein 08-jan-09 3fr2
Title: n-benzyl-indolo carboxylic acids: design and synthesis of potent and selective adipocyte fatty-acid binding protein (a-fabp) inhibitors
Author: t barf, k. hammer, f. lehmann, s. haile, e. axen, c. medina, l. rondahl, j. uppenberg, s. svensson, t. lundb ck
Keywords: cytoplasm, lipid-binding, nucleus, phosphoprotein, polymorphism, transport, lipid binding protein
3fr4.pdb. lipid binding protein 08-jan-09 3fr4 F
Title: n-benzyl-indolo carboxylic acids: design and synthesis of potent and selective adipocyte fatty-acid binding protein (a-fabp) inhibitors
Author: t. barf, k. hammer, f. lehmann, s. haile, e. axen, c. medina, j. uppenberg, s. svensson, l. rondahl, t. lundb ck
Keywords: cytoplasm, lipid-binding, nucleus, phosphoprotein, polymorphism, transport, lipid binding protein
3fr5.pdb. lipid binding protein 08-jan-09 3fr5
Title: n-benzyl-indolo carboxylic acids: design and synthesis of potent and selective adipocyte fatty-acid binding protein (a-fabp) inhibitors
Author: t. barf, k. hammer, f. lehmann, s. haile, e. axen, c. medina, j. uppenberg, s. svensson, l. rondahl, t. lundb ck
Keywords: cytoplasm, lipid-binding, nucleus, phosphoprotein, polymorphism, transport, lipid binding protein
3frx.pdb. signaling protein 08-jan-09 3frx Mn Se
Title: crystal structure of the yeast orthologue of rack1, asc1.
Author: s. m. coyle, w. v. gilbert, j. a. doudna
Keywords: wd40, beta propeller, ribosome, translation, acetylation, cytoplasm, phosphoprotein, wd repeat, signaling protein
3frz.pdb. transferase 08-jan-09 3frz
Title: crystal structure of hcv ns5b rna polymerase in complex with pf868554
Author: h. e. parge
Keywords: transcription regulation, transferase, transmembrane, ubl conjugation, viral nucleoprotein, virion, zinc
3fs9.pdb. metal binding protein 09-jan-09 3fs9 Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caahaam)
Author: m. j. banfield
Keywords: cupredoxin fold, metal binding, protein-protein interaction, electron transport, metal-binding, periplasm, transport, metal binding protein
3fsa.pdb. metal binding protein 09-jan-09 3fsa Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caahaam); chemically reduced.
Author: m. j. banfield
Keywords: cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein
3fsv.pdb. metal binding protein 12-jan-09 3fsv Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caaahaaam)
Author: m. j. banfield
Keywords: cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein
3fsw.pdb. metal binding protein 12-jan-09 3fsw Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caaaahaaam)
Author: m. j. banfield
Keywords: cupredoxin fold, metal-binding, protein:protein interaction, metal binding protein
3fsz.pdb. metal binding protein 12-jan-09 3fsz Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caaaahaaaam)
Author: m. j. banfield
Keywords: cupredoxin fold, metal binding, protein-protein interaction, metal binding protein
3ft0.pdb. metal binding protein 12-jan-09 3ft0 Cu
Title: pseudomonas aeruginosa azurin with mutated metal-binding loop sequence (caaaahaaaam), chemically reduced
Author: m. j. banfield
Keywords: cupredoxin-fold, metal binding, protein:protein interaction, metal binding protein
3ftt.pdb. transferase 13-jan-09 3ftt Se
Title: crystal structure of the galactoside o-acetyltransferase from staphylococcus aureus
Author: a. a. knapik, i. a. shumilin, h. cui, x. xu, m. chruszcz, m. d. zimmerman, m. cymborowski, w. f. anderson, a. savchenko, w. minor, center for structural genomics of infectious diseases (csgid)
Keywords: enzyme, structural genomics, acyltransferase, transferase, center for structural genomics of infectious diseases, csgid
3fw1.pdb. oxidoreductase 16-jan-09 3fw1 He Hg Ho Zn
Title: quinone reductase 2
Author: j. a. winger, o. hantschel, g. superti-furga, j. kuriyan
Keywords: flavoprotein, metalloprotein, imatinib complex, cytoplasm, fad, metal-binding, phosphoprotein, polymorphism, zinc
3fxy.pdb. hydrolase 21-jan-09 3fxy
Title: acidic mammalian chinase, catalytic domain
Author: a. m. olland
Keywords: secreted
3fy1.pdb. hydrolase 21-jan-09 3fy1
Title: the acidic mammalian chitinase catalytic domain in complex with methylallosamidin
Author: a. m. olland
Keywords: polysaccharide degradation, secreted
3fzv.pdb. transcription regulator 26-jan-09 3fzv Se
Title: crystal structure of pa01 protein, putative lysr family transcriptional regulator from pseudomonas aeruginosa
Author: a. a. knapik, k. l. tkaczuk, m. chruszcz, s. wang, m. d. zimmerman, m. cymborowski, t. skarina, o. kagan, a. savchenko, a. m. edwards, a. joachimiak, j. m. bujnicki, w. minor, midwest center for structural genomics (mcsg)
Keywords: transcription regulator
3g1z.pdb. ligase 30-jan-09 3g1z Cl
Title: structure of idp01693/yjea, a potential t-rna synthetase from salmonella typhimurium
Author: a. u. singer, e. evdokimova, m. kudritska, m. e. cuff, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
Keywords: center for structural genomics of infectious diseases, csgid
3g33.pdb. cell cycle 01-feb-09 3g33
Title: crystal structure of cdk4/cyclin d3
Author: t. takaki, a. echalier, n. r. brown, t. hunt, j. a. endicott, m. e. m. noble
Keywords: cyclin
3g5j.pdb. nucleotide binding protein 05-feb-09 3g5j Se
Title: crystal structure of n-terminal domain of putative atp/gtp binding protein from clostridium difficile 630
Author: b. nocek, l. bigelow, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: psi, mcsg, structural genomics, protein structure initiative, midwest center for structural genomics, nucleotide binding protein
3g6j.pdb. immune system 06-feb-09 3g6j Ca
Title: c3b in complex with a c3b specific fab
Author: c. wiesmann
Keywords: inflammatory response, innate immunity, phosphoprotein, polymorphism, secreted, thioester bond, immune system
3g7r.pdb. transcription regulator 10-feb-09 3g7r Cl I Na Se
Title: crystal structure of sco4454, a tetr-family transcriptional regulator from streptomyces coelicolor
Author: a. u. singer, x. xu, c. chang, j. gu, a. m. edwards, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: transcription regulation, transcription regulator
3g8f.pdb. hydrolase 12-feb-09 3g8f
Title: crystal structure of the complex formed between a group ii phospholipase a2 and designed peptide inhibitor carbobenzoxy-dehydro-val-ala-arg-ser at 1.2 a resolution
Author: n. singh, p. kaur, r. prem kumar, r. k. somvanshi, m. perbandt, c. betzel, s. dey, s. sharma, t. p. singh
Keywords: crystal structre, inhibitor, peptide, hydrolase
3gag.pdb. oxidoreductase 17-feb-09 3gag Se
Title: crystal structure of nitroreductase-like protein (np_720799.1) from streptococcus mutans at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: nitroreductase family, nitroreductase-like protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, oxidoreductase
3gbm.pdb. viral protein / immune system 20-feb-09 3gbm
Title: crystal structure of fab cr6261 in complex with a h5n1 influenza virus hemagglutinin.
Author: d. c. ekiert, m. a. elsliger, i. a. wilson
Keywords: fab, neutralizing antibodies, antibody, avian flu, envelope protein, fusion protein, viral protein / immune system complex
3gbn.pdb. viral protein/immune system 20-feb-09 3gbn Cl
Title: crystal structure of fab cr6261 in complex with the 1918 h1n1 influenza virus hemagglutinin
Author: d. c. ekiert, m. a. elsliger, i. a. wilson
Keywords: viral protein/immune system complex
3gbt.pdb. transferase 20-feb-09 3gbt Se
Title: crystal structure of gluconate kinase from lactobacillus acidophilus
Author: z. zhang, s. swaminathan, s. k. burley, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, nysgxrc
3gbu.pdb. transferase 20-feb-09 3gbu Se
Title: crystal structure of an uncharacterized sugar kinase ph1459 from pyrococcus horikoshii in complex with atp
Author: s. eswaramoorthy, g. kumar, z. zhang, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics
3gbv.pdb. transcription regulator 20-feb-09 3gbv Na Se
Title: crystal structure of a putative laci transcriptional regulator from bacteroides fragilis
Author: b. syed ibrahim, d. kumaran, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: transcription regulation, transcription regulator, new york sgx research center for structural genomics
3gbx.pdb. transferase 20-feb-09 3gbx Se
Title: serine hydroxymethyltransferase from salmonella typhimurium
Author: j. osipiuk, b. nocek, m. zhou, j. stam, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: idp01011, serine hydroxymethyltransferase, salmonella typhimurium., cytoplasm, one-carbon metabolism, pyridoxal phosphate, transferase, center for structural genomics of infectious diseases, csgid
3gc2.pdb. lyase 21-feb-09 3gc2 Cl Na Se
Title: 1.85 angstrom crystal structure of o-succinylbenzoate synthase from salmonella typhimurium in complex with succinic acid
Author: g. minasov, z. wawrzak, t. skarina, o. onopriyenko, p. scott, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid), center for structural genomics of infectious diseases (csgid)
Keywords: succinic acid, idp00994, lyase, magnesium, menaquinone biosynthesis, metal-binding, structural genomics, center for structural genomics of infectious diseases, csgid
3gci.pdb. hydrolase 22-feb-09 3gci Ca
Title: crystal structure of the complex formed between a new isoform of phospholipase a2 with c-terminal amyloid beta heptapeptide at 2 a resolution
Author: z. mirza, g. vikram, n. singh, m. sinha, a. bhushan, s. sharma, a. srinivasan, p. kaur, t. p. singh
Keywords: crystal structure, heptapeptide, amyloid beta, calcium, hydrolase, lipid degradation, metal-binding, secreted
3gdw.pdb. structural genomics, unknown function 24-feb-09 3gdw Se
Title: crystal structure of sigma-54 interaction domain protein from enterococcus faecalis
Author: c. chang, a. sather, k. buck, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: sigma-54 interaction domain protein, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, atp-binding, nucleotide-binding, unknown function
3gdz.pdb. ligase 24-feb-09 3gdz Se
Title: crystal structure of arginyl-trna synthetase from klebsiella pneumoniae subsp. pneumoniae
Author: c. chang, r. wu, j. bearden, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: cytoplasm, ligase, nucleotide-binding, protein biosynthesis
3ge6.pdb. oxidoreductase 25-feb-09 3ge6 Se
Title: crystal structure of putative nitroreductase in complex with fmn (yp_001815433.1) from exiguobacterium sp. 255-15 at 1.85 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative nitroreductase in complex with fmn, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function, oxidoreductase
3gem.pdb. oxidoreductase 25-feb-09 3gem Se
Title: crystal structure of short-chain dehydrogenase from pseudomonas syringae
Author: j. osipiuk, x. xu, h. cui, b. nocek, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc65077, short-chain dehydrogenase, oxidoreductase, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
3geu.pdb. cell adhesion 26-feb-09 3geu Cl Na Se
Title: crystal structure of icar from staphylococcus aureus, a member of the tetracycline repressor protein family
Author: s. m. anderson, j. s. brunzelle, z. wawrzak, t. skarina, l. papazisi, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
Keywords: cell adhesion
3gf0.pdb. hydrolase 26-feb-09 3gf0 Mg
Title: bifunctional dctp deaminase-dutpase mutant enzyme variant e145q from methanocaldococcus jannaschii in complex with pyrophosphate and magnesium
Author: j. h. b. siggaard, e. johansson, t. vognsen, s. s. helt, p. harris, m. willemoes
Keywords: bifunctional hydrolase, magnesium, nucleotide metabolism
3gf9.pdb. endocytosis 26-feb-09 3gf9
Title: crystal structure of human intersectin 2 rhogef domain
Author: y. shen, y. tong, w. tempel, y. li, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: guanine nucleotide exchange factor, sgc, alternative splicing, calcium, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, sh3 domain
3gff.pdb. hydrolase 26-feb-09 3gff Cl Se
Title: crystal structure of iroe-like serine hydrolase (np_718593.1) from shewanella oneidensis at 2.12 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: iroe-like serine hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, putative esterase
3gfk.pdb. transcription/transferase 27-feb-09 3gfk
Title: crystal structure of bacillus subtilis spx/rna polymerase alpha subunit c-terminal domain complex
Author: v. lamour, l. f. westblade, e. a. campbell, s. a. darst
Keywords: cytoplasm, redox-active center, stress response, transcription, transcription regulation, dna-directed rna polymerase, nucleotidyltransferase, transferase, transcription/transferase complex
3gft.pdb. signaling protein 27-feb-09 3gft Mg
Title: human k-ras in complex with a gtp analogue
Author: y. tong, w. tempel, l. shen, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: membrane, methylation, nucleotide- binding, palmitate, polymorphism, prenylation, proto- oncogene, signaling protein
3gg6.pdb. hydrolase 27-feb-09 3gg6
Title: crystal structure of the nudix domain of human nudt18
Author: l. tresaugues, m. i. siponen, l. lethio, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. karlberg, t. kotenyova, m. moche, m. e. nilsson, t. nyman, c. persson, j. sagemark, h. schueler, a. g. thorsell, s. van den berg, j. weigelt, m. welin, m. wisniewska, p. nordlund, structural genomics consortium (sgc)
Keywords: nudt18, nxr1, nucleotide hydrolase, hydrolase, structural genomics, structural genomics consortium, sgc, sgc stockholm, alternative splicing, magnesium, manganese, metal-binding
3ggg.pdb. oxidoreductase 27-feb-09 3ggg
Title: the crystal structure of a. aeolicus prephenate dehydrogenase in complex with tyrosine and nad+
Author: w. sun, d. shahinas, d. christendat
Keywords: beta-alpha, tyrosine-bound, nad, oxidoreductase
3ggo.pdb. oxidoreductase 01-mar-09 3ggo
Title: crystal structure of prephenate dehydrogenase from a. aeolicus with hpp and nadh
Author: w. sun, d. shahinas, d. christendat
Keywords: hpp, nadh, alpha-beta, oxidoreductase
3ggp.pdb. oxidoreductase 01-mar-09 3ggp Cl
Title: crystal structure of prephenate dehydrogenase from a. aeolicus in complex with hydroxyphenyl propionate and nad+
Author: w. sun, d. shahinas, m. s. kimber, d. christendat
Keywords: tyra, prephenate dehydrogenase, alpha-beta, oxidoreductase
3gh1.pdb. structural genomics, unknown function 02-mar-09 3gh1 Se
Title: crystal structure of predicted nucleotide-binding protein from vibrio cholerae
Author: v. n. malashkevich, r. toro, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: crystal structure, protein structure initiative, new york structural genomix research consortium, nysgxrc, psi, unknown function, new york sgx research center for structural genomics

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Metalloprotein Structure and Design project home page: www.scripps.edu/research/metallo
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