Recent PDB releases or updates: week of 24 October 2008

• 1aof.pdb. oxidoreductase 02-jul-97 1aof Fe
  Title: cytochrome cd1 nitrite reductase, reduced form
  Author: p. a. williams, v. fulop
  Keywords: nitrite reductase, oxidoreductase, nitrate assimilation
  
• 1hgg.pdb. viral protein 01-nov-91 1hgg He
  Title: binding of influenza virus hemagglutinin to analogs of its cell-surface receptor, sialic acid: analysis by proton nuclear magnetic resonance spectroscopy and x-ray crystallography
  Author: n. k. sauter, j. e. hanson, g. d. glick, j. h. brown, r. l. crowther, s. - j. park, j. j. skehel, d. c. wiley
  
  
• 1wjx.pdb. rna binding protein 29-may-04 1wjx K
  Title: crystal sturucture of tt0801 from thermus thermophilus
  Author: y. bessho, r. shibata, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi
  
• 1z2l.pdb. hydrolase 08-mar-05 1z2l Zn
  Title: crystal structure of allantoate-amidohydrolase from e.coli k12 in complex with substrate allantoate
  Author: r. agarwal, s. swaminathan, s. k. burley, new york structural genomix research consortium (nysgxrc)
  Keywords: allantoate, allc, purine catabolism, allantoin utilization, t1507, structural genomics, psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
  
• 2czj.pdb. rna binding protein/rna 13-jul-05 2czj
  Title: crystal structure of the trna domain of tmrna from thermus thermophilus hb8
  Author: y. bessho, r. shibata, s. sekine, k. murayama, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: tmrna, ssra rna, 10sa rna, trna, trans-translation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2d7c.pdb. protein transport 16-nov-05 2d7c Mg Se
  Title: crystal structure of human rab11 in complex with fip3 rab- binding domain
  Author: t. shiba, h. koga, h. -w. shin, m. kawasaki, r. kato, k. nakayama, s. wakatsuki
  Keywords: coiled-coil
  
• 2dji.pdb. oxidoreductase 03-apr-06 2dji
  Title: crystal structure of pyruvate oxidase from aerococcus viridans containing fad
  Author: e. c. m. juan, m. t. hossain, k. suzuki, t. yamamoto, s. imamura, t. sekiguchi, a. takenaka
  Keywords: flavoprotein
  
• 2dul.pdb. transferase 24-jul-06 2dul
  Title: crystal structure of trna g26 methyltransferase trm1 in apo form from pyrococcus horikoshii
  Author: ihsanawati, m. shirouzu, y. bessho, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: guanine 26, n(2),n(2)- dimethyltransferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2eem.pdb. antibiotic 16-feb-07 2eem Hg (NMR, 20 structures)
  Title: solution structure of the synthetic mytilin
  Author: p. roch, y. yang, a. aumelas
  Keywords: antiviral peptide, cystein stabilized alpha-beta motif, nmr, disulfide bond, antibiotic
  
• 2ejt.pdb. transferase 20-mar-07 2ejt
  Title: complex structure of trm1 from pyrococcus horikoshii with s- adenosyl-l-methionine
  Author: ihsanawati, m. shirouzu, y. bessho, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: guanine-26,n(2)-n(2)- dimethyltransferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2eju.pdb. transferase 20-mar-07 2eju
  Title: complex structure of trm1 from pyrococcus horikoshii with s- adenosyl-l-homocystein
  Author: ihsanawati, m. shirouzu, y. bessho, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: guanine-26,n(2)-n(2)- dimethyltransferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2img.pdb. hydrolase 04-oct-06 2img Se
  Title: crystal structure of dual specificity protein phosphatase 23 from homo sapiens in complex with ligand malate ion
  Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
  Keywords: hydrolase
  
• 2jk4.pdb. transport 15-aug-08 2jk4
  Title: structure of the human voltage-dependent anion channel
  Author: m. bayrhuber, t. meins, m. habeck, s. becker, k. giller, s. villinger, c. vonrhein, c. griesinger, m. zweckstetter, k. zeth
  Keywords: mitochondrion, cell membrane
  
• 2jkd.pdb. gene regulation 27-aug-08 2jkd
  Title: structure of the yeast pml1 splicing factor and its integration into the res complex
  Author: m. a. brooks, a. dziembowski, s. quevillon-cheruel, v. henriot, c. faux, h. van tilbeurgh, b. seraphin
  Keywords: pml1/snu17/bud13, pre-mrna splicing, saccharomyces cerevisiae, phospho-peptide recognition, res, nucleus, cytoplasm, mrna splicing, gene regulation
  
• 2jla.pdb. transferase 05-sep-08 2jla Cl Mn Se
  Title: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl- 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet protein
  Author: a. dawson, p. k. fyfe, w. n. hunter
  Keywords: manganese, magnesium, transferase, thiamine diphosphate cofactor, thiamine pyrophosphate, menaquinone biosynthesis, metal-binding, enzyme mechanism
  
• 2jlc.pdb. transferase 08-sep-08 2jlc Mn
  Title: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl- 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - native protein
  Author: a. dawson, p. k. fyfe, w. n. hunter
  Keywords: manganese, magnesium, transferase, metal-binding, thiamine diphosphate cofactor, enzyme mechanism, thiamine pyrophosphate
  
• 2jnk.pdb. hydrolase 26-jan-07 2jnk He Hg (NMR, 20 structures)
  Title: solution sructure of a dockerin-containing modular pair from a family 84 glycoside hydrolase
  Author: s. chitayat, j. j. adams, e. a. bayer, s. p. smith
  Keywords: hydrolase
  
• 2jsh.pdb. hormone 05-jul-07 2jsh He Hg (NMR, 28 structures)
  Title: obestatin nmr structure in sds/dpc micellar solution
  Author: a. m. d'ursi, m. scrima, c. esposito, p. campiglia
  Keywords: micellar solution, dpc, sds, alternative splicing, amidation, hormone, lipoprotein, secreted
  
• 2jsi.pdb. hormone 05-jul-07 2jsi He (NMR, 25 structures)
  Title: 11-23 obestatin fragment in dpc/sds micellar solution
  Author: a. m. d'ursi, m. scrima, c. esposito, p. campiglia
  Keywords: micellar solution, dpc, sds, alternative splicing, amidation, hormone, lipoprotein, secreted
  
• 2jsj.pdb. hormone 05-jul-07 2jsj He Hg (NMR, 29 structures)
  Title: obestatin in water solution
  Author: a. m. d'ursi, m. scrima, c. esposito, p. campiglia
  Keywords: water solution, alternative splicing, amidation, hormone, lipoprotein, secreted
  
• 2jw2.pdb. lipid binding protein 03-oct-07 2jw2 He Hg (NMR, 16 structures)
  Title: validation of inter-helical orientation of the steril-alpha- motif of human deleted in liver cancer 2 by residual dipolar couplings
  Author: h. li, k. sze, k. fung
  Keywords: rdc refinement, alternative splicing, anti- oncogene, cell cycle, cytoplasm, gtpase activation, polymorphism, lipid binding protein
  
• 2jwd.pdb. immune system 09-oct-07 2jwd He Hg (NMR, 29 structures)
  Title: protein a
  Author: a. robertson, j. horne, m. j. scanlon, s. p. bottomley
  Keywords: poly glutamine, cell wall, igg-binding protein, peptidoglycan-anchor, secreted, immune system
  
• 2jxh.pdb. dna binding protein 19-nov-07 2jxh He Hg (NMR, 30 structures)
  Title: solution structure of dna binding domain of proline utilization a (puta) for psuedomonas putida
  Author: s. halouska, y. zhou, d. becker, r. powers
  Keywords: proline, utilization, dna, binding, dna binding protein
  
• 2jxi.pdb. dna binding protein, dna 19-nov-07 2jxi He Ho (NMR, minimized average structure)
  Title: solution structure of the dna-binding domain of pseudomonas putida proline utilization a (puta) bound to gttgca dna sequence
  Author: s. halouska, y. zhou, d. becker, r. powers
  Keywords: proline, utilization, dna, binding, dna binding protein
  
• 2jyb.pdb. oxidoreductase 10-dec-07 2jyb He Hg (NMR, 20 structures)
  Title: binary hvdhfr1:folate complex
  Author: a. a. f. b. boroujerdi, j. k. young
  Keywords: halophilic, binding, folate, nadp, one-carbon metabolism, oxidoreductase
  
• 2jzj.pdb. carbohydrate binding protein 09-jan-08 2jzj He Hg (NMR, 30 structures)
  Title: structure of crcvnh (c. richardii cvnh)
  Author: l. m. i. koharudin, a. r. viscomi, j. jee, s. ottonello, a. m. gronenborn
  Keywords: nmr, antiviral protein, carbohydrate binding protein
  
• 2jzk.pdb. carbohydrate binding protein 09-jan-08 2jzk He Hg (NMR, 30 structures)
  Title: structure of tbcvnh (t. borchii cvnh) (casp target)
  Author: l. m. i. koharudin, a. r. viscomi, j. jee, s. ottonello, a. m. gronenborn
  Keywords: nmr, antiviral protein, carbohydrate binding protein
  
• 2jzl.pdb. carbohydrate binding protein 09-jan-08 2jzl He Hg (NMR, 30 structures)
  Title: structure of nccvnh (n. crassa cvnh) (casp target)
  Author: l. m. i. koharudin, a. r. viscomi, j. jee, s. ottonello, a. m. gronenborn
  Keywords: nmr, antiviral protein, carbohydrate binding protein
  
• 2k13.pdb. toxin 20-feb-08 2k13 He Hg (NMR, 10 structures)
  Title: solution nmr structure of the leech protein saratin, a novel inhibitor of haemostasis
  Author: w. gronwald, j. bomke, t. maurer, b. wisotzki, f. huber, f. schumann, w. kremer, m. frech, h. r. kalbitzer
  Keywords: mixed alpha/beta structure, fold typical for pan domains, toxin
  
• 2k2b.pdb. transport protein 31-mar-08 2k2b He Hg (NMR, 20 structures)
  Title: sparse-constraint solution nmr structure of micelle- solublized cytosolic amino terminal domain of c. elegans mechanosensory ion channel subunit mec-4. new york consortium on membrane protein structure (nycomps) (casp target)
  Author: j. k. everett, g. liu, m. a. driscoll, g. t. montelione, new york consortium on membrane protein structure (nycomps)
  Keywords: structural genomics, psi-2, protein structure initiative, new york consortium on membrane protein structure, nycomps
  
• 2k3h.pdb. protein transport 08-may-08 2k3h He Hg Ca (NMR, 20 structures)
  Title: structural determinants for ca2+ and pip2 binding by the c2a domain of rabphilin-3a
  Author: n. coudevylle, p. montaville, a. leonov, m. zweckstetter, s. becker
  Keywords: c2 domain, calcium, tama mechanism, cell junction, metal-binding, phosphoprotein, protein transport, synapse, transport, zinc, zinc-finger
  
• 2k7w.pdb. apoptosis 27-aug-08 2k7w He (NMR, 20 structures)
  Title: bax activation is initiated at a novel interaction site
  Author: e. gavathiotis, m. suzuki, m. l. davis, k. pitter, g. h. bird, s. g. katz, h. tu, h. kim, e. h. y. cheng, n. tjandra, l. d. walensky
  Keywords: bim, bh3, bcl-2, apoptosis
  
• 2ozn.pdb. toxin 26-feb-07 2ozn Cl Ca
  Title: the cohesin-dockerin complex of nagj and nagh from clostridium perfringens
  Author: j. j. adams, a. boraston, s. p. smith
  Keywords: toxin
  
• 2q06.pdb. viral protein, rna binding protein 21-may-07 2q06
  Title: crystal structure of influenza a virus h5n1 nucleoprotein
  Author: a. k. l. ng, h. zhang, k. tan, j. wang, p. c. shaw
  Keywords: h5n1, nucleoprotein, viral protein, rna binding protein
  
• 2rgw.pdb. transferase 05-oct-07 2rgw
  Title: catalytic subunit of m. jannaschii aspartate transcarbamoylase
  Author: j. vitali, m. j. colaneri, e. r. kantrowitz
  Keywords: pyrimidine biosynthesis, thermostability, methanococcus jannaschii, crystal structure, transferase
  
• 2rhh.pdb. cell cycle 09-oct-07 2rhh
  Title: bacillus subtilis ftsz with bound sulfate ion
  Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
  Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
  
• 2rhj.pdb. cell cycle 09-oct-07 2rhj Na
  Title: bacillus subtilis ftsz with two sulfate ions and sodium ion in the nucleotide pocket
  Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
  Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
  
• 2rhl.pdb. cell cycle 09-oct-07 2rhl
  Title: bacillus subtilis ftsz ncs dimer with bound gdp
  Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
  Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
  
• 2rho.pdb. cell cycle 09-oct-07 2rho
  Title: bacillus subtilis ftsz ncs dimer with bound gdp and gtp- gamma-s
  Author: s. lovell, z. halloran, k. hjerrild, d. sheridan, a. burgin, l. stewart
  Keywords: tubulin homolog, gtp-binding, polymerization, gtpase, cell cycle
  
• 2rop.pdb. hydrolase 04-apr-08 2rop He Hg (NMR, 20 structures)
  Title: solution structure of domains 3 and 4 of human atp7b
  Author: l. banci, i. bertini, f. cantini, a. c. rosenzweig, l. a. yatsunyk
  Keywords: membrane, metal-binding, mitochondrion, nucleotide-binding, phosphoprotein, polymorphism, transmembrane, transport
  
• 2v4y.pdb. transferase 30-sep-08 2v4y
  Title: the structure of e. coli ump kinase in complex with its allosteric regulator gtp
  Author: p. meyer, c. evrin, p. briozzo, n. joly, o. barzu, a. m. gilles
  Keywords: pyrimidine biosynthesis, transferase, atp-binding, allosteric enzyme, gtp, kinase, allostery, cytoplasm, nmp kinase
  
• 2v54.pdb. transferase 01-oct-08 2v54 Mg
  Title: crystal structure of vaccinia virus thymidylate kinase bound to tdp
  Author: c. caillat, d. topalis, l. a. agrofoglio, s. pochet, j. balzarini, d. deville-bonne, p. meyer
  Keywords: atp-binding, nucleotide-binding, kinase, poxvirus, tmp kinase, transferase
  
• 2v5e.pdb. receptor/glycoprotein complex 03-oct-08 2v5e
  Title: the structure of the gdnf\:coreceptor complex\: insights into ret signalling and heparin binding.
  Author: v. parkash, v. -m. leppanen, h. virtanen, j. -m. jurvansuu, m. m. bespalov, y. a. sidorova, p. runeberg-roos, m. saarma, a. goldman
  Keywords: cleavage on pair of basic residues
  
• 2vzf.pdb. oxidoreductase 01-aug-08 2vzf
  Title: crystal structures of nadh:fmn oxidoreductase (emob)-apo form
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2vzh.pdb. oxidoreductase 01-aug-08 2vzh
  Title: structures of nadh:fmn oxidoreductase (emob)-fmn complex
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2vzj.pdb. oxidoreductase 01-aug-08 2vzj
  Title: crystal structures of nadh:fmn oxidoreductase (emob)-fmn, nadh complex
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2w0s.pdb. transferase 08-oct-08 2w0s Mg Br
  Title: crystal structure of vaccinia virus thymidylate kinase bound to brivudin-5'-monophosphate
  Author: c. caillat, d. topalis, l. a. agrofoglio, s. pochet, j. balzarini, d. deville-bonne, p. meyer
  Keywords: atp-binding, nucleotide-binding, kinase, poxvirus, tmp kinase, transferase
  
• 2ytz.pdb. transferase 05-apr-07 2ytz
  Title: complex structure of trm1 from pyrococcus horikoshii with s- adenosyl-l-homocystein in the orthorhombic crystal-lattice
  Author: ihsanawati, m. shirouzu, y. bessho, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: guanine-26,n(2)-n(2)- dimethyltransferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2yv6.pdb. apoptosis 09-apr-07 2yv6 Se
  Title: crystal structure of ms0836
  Author: h. wang, s. kishishita, k. murayama, c. takemoto, t. terada, m. shirouzu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: bcl domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, apoptosis
  
• 2zjs.pdb. protein transport/immune system 08-mar-08 2zjs Zn
  Title: crystal structure of secye translocon from thermus thermophilus with a fab fragment
  Author: t. tsukazaki, h. mori, s. fukai, r. ishitani, a. perederina, d. g. vassylyev, k. ito, o. nureki
  Keywords: sec, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport, protein transport/immune system complex
  
• 2zjx.pdb. hydrolase inhibitor 11-mar-08 2zjx
  Title: bovine pancreatic trypsin inhibitor (bpti) containing only the [5,55] disulfide bond
  Author: m. m. islam, s. sohya, k. noguchi, m. yohda, y. kuroda
  Keywords: crystal structure, hydrolase inhibitor
  
• 2zmu.pdb. luminescent protein 21-apr-08 2zmu
  Title: crystal structure of monomeric kusabira-orange (mko), orange-emitting gfp-like protein, at ph 9.1
  Author: a. kikuchi, e. fukumura, s. karasawa, h. mizuno, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: luminescent protein, structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 2zmw.pdb. luminescent protein 21-apr-08 2zmw
  Title: crystal structure of monomeric kusabira-orange (mko), orange-emitting gfp-like protein, at ph 6.0
  Author: a. kikuchi, e. fukumura, s. karasawa, h. mizuno, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: luminescent protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2znh.pdb. blood clotting 25-apr-08 2znh
  Title: crystal structure of a domain-swapped serpin dimer
  Author: m. yamasaki, j. a. huntington
  Keywords: blood coagulation, disease mutation, glycoprotein, heparin-binding, polymorphism, protease inhibitor, secreted, serine protease inhibitor, thrombophilia, blood clotting
  
• 2zpb.pdb. lyase 09-jul-08 2zpb Mg Fe
  Title: nitrosylated fe-type nitrile hydratase
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpe.pdb. lyase 10-jul-08 2zpe Mg Fe
  Title: nitrosylated fe-type nitrile hydratase with tert- butylisonitrile
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpf.pdb. lyase 11-jul-08 2zpf Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 18min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpg.pdb. lyase 11-jul-08 2zpg Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 120min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zph.pdb. lyase 11-jul-08 2zph Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 340min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpi.pdb. lyase 11-jul-08 2zpi Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 440min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpl.pdb. hydrolase 17-jul-08 2zpl Ni Se
  Title: crystal structure analysis of pdz domain a
  Author: k. inaba, m. suzuki
  Keywords: membrane protein, pdz-domain, hydrolase, inner membrane, membrane, metal-binding, metalloprotease, protease, transmembrane, zinc
  
• 2zpm.pdb. hydrolase 17-jul-08 2zpm Se
  Title: crystal structure analysis of pdz domain b
  Author: k. inaba, m. suzuki
  Keywords: membrane protein, pdz domain, hydrolase, inner membrane, membrane, metal-binding, metalloprotease, protease, transmembrane, zinc
  
• 2zqp.pdb. protein transport 14-aug-08 2zqp
  Title: crystal structure of secye translocon from thermus thermophilus
  Author: t. tsukazaki, o. nureki
  Keywords: sec, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport
  
• 2zs0.pdb. oxygen storage, oxygen transport 02-sep-08 2zs0 Cl Fe Ca
  Title: structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin
  Author: n. numoto, t. nakagawa, a. kita, y. sasayama, y. fukumori, k. miki
  Keywords: annelida, calcium, magnesium, cooperativity, heme, iron, metal-binding, oxygen transport, secreted, transport, oxygen storage
  
• 2zs1.pdb. oxygen storage, oxygen transport 02-sep-08 2zs1 Cl Mg Fe
  Title: structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin
  Author: n. numoto, t. nakagawa, a. kita, y. sasayama, y. fukumori, k. miki
  Keywords: annelida, calcium, magnesium, cooperativity, heme, iron, metal-binding, oxygen transport, secreted, transport, oxygen storage
  
• 2zsj.pdb. lyase 11-sep-08 2zsj
  Title: crystal structure of threonine synthase from aquifex aeolicus vf5
  Author: h. mizutani, n. kunishima
  Keywords: plp dependent enzyme, lyase
  
• 2zsk.pdb. unknown function 12-sep-08 2zsk
  Title: crystal structure of ph1733, an aspartate racemase homologue, from pyrococcus horikoshii ot3
  Author: a. kita, s. tasaki, m. yohda, k. miki
  Keywords: unknown function
  
• 2zsl.pdb. isomerase 17-sep-08 2zsl
  Title: crystal structure of glutamate-1-semialdehyde 2,1- aminomutase from aeropyrum pernix
  Author: h. mizutani, n. kunishima
  Keywords: gsa, cytoplasm, isomerase, porphyrin biosynthesis, pyridoxal phosphate
  
• 2zsm.pdb. isomerase 17-sep-08 2zsm Cl
  Title: crystal structure of glutamate-1-semialdehyde 2,1- aminomutase from aeropyrum pernix, hexagonal form
  Author: h. mizutani, n. kunishima
  Keywords: gsa, cytoplasm, isomerase, porphyrin biosynthesis, pyridoxal phosphate
  
• 2zsu.pdb. transferase 17-sep-08 2zsu
  Title: crystal structure of spermidine synthase from pyrococcus horikoshii ot3, p1 form
  Author: h. mizutani, n. kunishima
  Keywords: aminopropylagmatine, polyamine biosynthesis, spermidine biosynthesis, transferase
  
• 2zti.pdb. hydrolase 06-oct-08 2zti Mn
  Title: structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii ot3: functional significance of interprotomer conformational changes
  Author: n. k. lokanath, riken structural genomics/proteomics initiative (rsgi)
  Keywords: hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 3b3d.pdb. oxidoreductase 20-oct-07 3b3d Ca
  Title: b.subtilis ytbe
  Author: y. f. zhou, l. f. li, y. h. liang, x. -d. su
  Keywords: oxidoreductase
  
• 3b3e.pdb. oxidoreductase 20-oct-07 3b3e
  Title: b.subtilis yvgn
  Author: y. f. zhou, l. f. li, y. h. liang, x. -d. su
  Keywords: oxidoreductase
  
• 3bbu.pdb. ribosome 11-nov-07 3bbu (cryo-electron microscopy)
  Title: the hsp15 protein fitted into the low resolution cryo-em map of the 50s.nc-trna.hsp15 complex
  Author: l. jiang, j. p. abrahams
  Keywords: heat shock, rescue stalled ribosome
  
• 3bbv.pdb. ribosome 11-nov-07 3bbv (cryo-electron microscopy)
  Title: the trna(phe) fitted into the low resolution cryo-em map of the 50s.nc-trna.hsp15 complex
  Author: l. jiang, j. p. abrahams
  Keywords: trna, rescue stalled ribosome
  
• 3bbx.pdb. ribosome 11-nov-07 3bbx Mg (cryo-electron microscopy)
  Title: the hsp15 protein fitted into the low resolution cryo-em map of the 50s.nc-trna.hsp15 complex
  Author: l. jiang, j. p. abrahams
  Keywords: large subunit, 50s rescue stalled ribosome
  
• 3bgm.pdb. immune system 27-nov-07 3bgm
  Title: crystal structure of pkd2 phosphopeptide bound to human class i mhc hla-a2
  Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
  Keywords: phosphoprotein, serine/threonine-protein kinase, immune system
  
• 3bh8.pdb. immune system 28-nov-07 3bh8
  Title: crystal structure of rqa_m phosphopeptide bound to human class i mhc hla-a2
  Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
  Keywords: phosphoprotein, immune system
  
• 3bh9.pdb. immune system 28-nov-07 3bh9 Na
  Title: crystal structure of rty phosphopeptide bound to human class i mhc hla-a2
  Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
  Keywords: phosphoprotein, immune system
  
• 3bhb.pdb. immune system 28-nov-07 3bhb
  Title: crystal structure of kmd phosphopeptide bound to human class i mhc hla-a2
  Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
  Keywords: phosphoprotein, immune system
  
• 3bhi.pdb. oxidoreductase 28-nov-07 3bhi Cl
  Title: crystal structure of human carbonyl reductase 1 in complex with nadp
  Author: d. rauh, r. l. bateman, k. m. shokat
  Keywords: acetylation, cytoplasm, nadp, polymorphism
  
• 3bhj.pdb. oxidoreductase 28-nov-07 3bhj
  Title: crystal structure of human carbonyl reductase 1 in complex with glutathione
  Author: d. rauh, r. l. bateman, k. m. shokat
  Keywords: acetylation, cytoplasm, nadp, polymorphism
  
• 3bhm.pdb. oxidoreductase 28-nov-07 3bhm
  Title: crystal structure of human carbonyl reductase 1 in complex with s-hydroxymethylglutathione
  Author: r. l. bateman, d. rauh, k. m. shokat
  Keywords: acetylation, cytoplasm, nadp, polymorphism
  
• 3bl7.pdb. hydrolase 10-dec-07 3bl7 F
  Title: dcps bound to inhibitor dg156844
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3bl9.pdb. hydrolase 10-dec-07 3bl9 Cl
  Title: dcps bound to inhibitor dg157493
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3bla.pdb. hydrolase 10-dec-07 3bla Cl
  Title: dcps bound to inhibitor dg153249
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3blu.pdb. hydrolase 11-dec-07 3blu
  Title: crystal structure yoph complexed with inhibitor pvs
  Author: s. liu, z-y. zhang
  Keywords: binding selectivity, probe, crystal structure, hydrolase, membrane, outer membrane, plasmid, protein phosphatase, secreted, virulence
  
• 3bqu.pdb. immune system 20-dec-07 3bqu
  Title: crystal structure of the 2f5 fab'-3h6 fab complex
  Author: s. bryson, j. -p. julien, d. e. isenman, r. kunert, h. katinger, e. f. pai
  Keywords: immune system
  
• 3bxx.pdb. oxidoreductase 15-jan-08 3bxx
  Title: binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site
  Author: n. trabelsi, p. petit, t. granier, b. langlois d'estaintot, s. delrot, b. gallois
  Keywords: oxidoreductase
  
• 3c1b.pdb. structural protein/dna 22-jan-08 3c1b
  Title: the effect of h3 k79 dimethylation and h4 k20 trimethylation on nucleosome and chromatin structure
  Author: x. lu, m. simon, j. chodaparambil, j. hansen, k. shokat, k. luger
  Keywords: nucleus, phosphoprotein, ubl conjugation, structural protein/dna complex
  
• 3c1c.pdb. structural protein/dna 22-jan-08 3c1c
  Title: the effect of h3 k79 dimethylation and h4 k20 trimethylation on nucleosome and chromatin structure
  Author: x. lu, m. simon, j. chodaparambil, j. hansen, k. shokat, k. luger
  Keywords: phosphoprotein, ubl conjugation, structural protein/dna complex
  
• 3c1t.pdb. oxidoreductase 24-jan-08 3c1t
  Title: binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site
  Author: n. trabelsi, p. petit, t. granier, b. langlois d'estaintot, s. delrot, b. gallois
  Keywords: rossmann fold, flavonoids, oxidoreductase
  
• 3c6b.pdb. hydrolase 04-feb-08 3c6b
  Title: reaction product of paraoxon and s-formylglutathione hydrolase w197i mutant
  Author: p. m. legler, c. b. millard
  Keywords: serine hydrolase, thioesterase, formaldehyde, organophosphate, cytoplasm, serine esterase
  
• 3c79.pdb. choline-binding protein 06-feb-08 3c79 Cl
  Title: crystal structure of aplysia californica achbp in complex with the neonicotinoid imidacloprid
  Author: t. t. talley, m. harel, r. e. hibbs, m. tomizawa, j. e. casida, p. w. taylor
  Keywords: receptor, choline-binding protein
  
• 3c84.pdb. choline-binding protein 08-feb-08 3c84 Cl Mg
  Title: crystal structure of a complex of achbp from aplysia californica and the neonicotinoid thiacloprid
  Author: t. t. talley, m. harel, r. e. hibbs, m. tomizawa, j. e. casida, p. w. taylor
  Keywords: neonicotinoid, receptor, choline-binding protein
  
• 3cak.pdb. hydrolase 20-feb-08 3cak Co
  Title: x-ray structure of wt pte with ethyl phosphate
  Author: j. kim, p. -c. tsai, s. c. almo, f. m. raushel
  Keywords: hydrolase, membrane, metal-binding, plasmid
  
• 3ccb.pdb. hydrolase 25-feb-08 3ccb
  Title: crystal structure of human dpp4 in complex with a benzimidazole derivative
  Author: m. b. wallace, r. j. skene
  Keywords: denzimidazole derivatives, peptidase, aminopeptidase, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, signal- anchor, transmembrane
  
• 3ccc.pdb. hydrolase 25-feb-08 3ccc Cl
  Title: crystal structure of human dpp4 in complex with a benzimidazole derivative
  Author: m. b. wallace, r. j. skene
  Keywords: denzimidazole derivatives, peptidase, aminopeptidase, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, signal- anchor, transmembrane
  
• 3ccd.pdb. transferase 25-feb-08 3ccd
  Title: 1.0 a structure of post-succinimide his15asp hpr
  Author: s. napper, l. prasad, l. t. j. delbaere
  Keywords: isoaspartate, protein damage, autophosphatase, transferase
  
• 3ci7.pdb. hydrolase inhibitor 11-mar-08 3ci7
  Title: crystal structure of a simplified bpti containing 20 alanines
  Author: m. m. islam, s. sohya, k. noguchi, m. yohda, y. kuroda
  Keywords: bovine pancreatic trypsin inhibitor, structure, hydrolase inhibitor
  
• 3cpo.pdb. isomerase 31-mar-08 3cpo F
  Title: crystal structure of ketosteroid isomerase d40n with bound 2-fluorophenol
  Author: j. m. m. caaveiro, b. pybus, d. ringe, g. petsko
  Keywords: active site, binding, hydrogen bond, geometry, isomerase, lipid metabolism, steroid metabolism
  
• 3cr3.pdb. transferase 04-apr-08 3cr3 Mg Se
  Title: structure of a transient complex between dha-kinase subunits dham and dhal from lactococcus lactis
  Author: j. m. jeckelmann, a. zurbriggen, s. christen, u. baumann, b. erni
  Keywords: atp-binding, glycerol metabolism, nucleotide-binding, phosphotransferase system
  
• 3crz.pdb. 08-apr-08 3crz
  Title: ferredoxin-nadp reductase
  Author: h. han, e. schonbrunn
  
  
• 3csp.pdb. structural protein 10-apr-08 3csp
  Title: crystal structure of the dm2 mutant of myelin oligodendrocyte glycoprotein
  Author: c. breithaupt, b. schafer, h. pellkofer, r. huber, c. linington, u. jacob
  Keywords: structural protein
  
• 3ct4.pdb. transferase 11-apr-08 3ct4
  Title: structure of dha-kinase subunit dhak from l. lactis
  Author: j. m. jeckelmann, a. zurbriggen, s. christen, u. baumann, b. erni
  Keywords: dihydroxyacetone kinase subunit, tranferase, covalently linked 2ha, glycerol metabolism, transferase
  
• 3ct6.pdb. transferase 11-apr-08 3ct6 He Hg
  Title: crystal structure of dham of l. lactis
  Author: a. zurbriggen
  Keywords: glycerol metabolism, kinase, phosphotransferase system, transferase
  
• 3cu4.pdb. electron transport 15-apr-08 3cu4 Fe
  Title: omcf, outer membrance cytochrome f from geobacter sulfurreducens
  Author: p. r. pokkuluri, m. schiffer
  Keywords: geobacter sulfurreducens, monoheme cytochrome, electron transport
  
• 3d0e.pdb. transferase inhibitor 01-may-08 3d0e
  Title: crystal structure of human akt2 in complex with gsk690693
  Author: n. o. concha, a. smallwood
  Keywords: akt2, inhibitor, atp-binding, kinase, nucleotide- binding, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase, transferase inhibitor
  
• 3d3x.pdb. hydrolase 13-may-08 3d3x Zn
  Title: crystal structure of botulinum neurotoxin serotype e catalytic domain in complex with snap-25 substrate peptide
  Author: r. agarwal, s. swaminathan
  Keywords: bont e, snap-25, enzyme-substrate complex, hydrolase
  
• 3d7j.pdb. unknown function 21-may-08 3d7j Cl Na Se
  Title: sco6650, a 6-pyruvoyltetrahydropterin synthase homolog from streptomyces coelicolor
  Author: j. e. spoonamore, s. a. roberts, a. heroux, v. bandarian
  Keywords: unknown function
  
• 3d89.pdb. electron transport 22-may-08 3d89 Fe
  Title: crystal structure of a soluble rieske ferredoxin from mus musculus
  Author: e. j. levin, j. g. mccoy, n. l. elsen, k. d. seder, c. a. bingman, g. e. wesenberg, b. g. fox, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
  Keywords: electron transport
  
• 3dfz.pdb. oxidoreductase 12-jun-08 3dfz
  Title: sirc, precorrin-2 dehydrogenase
  Author: h. l. schubert, c. p. hill, m. j. warren
  Keywords: cobalamin biosynthesis, nad, oxidoreductase, porphyrin biosynthesis
  
• 3diw.pdb. signaling protein/cell adhesion 21-jun-08 3diw
  Title: c-terminal beta-catenin bound tip-1 structure
  Author: y. shen
  Keywords: tip-1, tax-interacting protein-1, pdz domain, cytoplasm, nucleus, wnt signaling pathway, signaling protein/cell adhesion complex
  
• 3dj1.pdb. signaling protein 21-jun-08 3dj1
  Title: crystal structure of tip-1 wild type
  Author: y. shen
  Keywords: pdz domain, tip-1, cytoplasm, nucleus, wnt signaling pathway, signaling protein
  
• 3dj3.pdb. signaling protein 21-jun-08 3dj3
  Title: crystal structure of c-terminal truncated tip-1 (6-113)
  Author: y. shen
  Keywords: pdz domain, cytoplasm, nucleus, wnt signaling pathway, signaling protein
  
• 3dmt.pdb. oxidoreductase 01-jul-08 3dmt
  Title: structure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from trypanosoma cruzi in complex with the irreversible iodoacetate inhibitor
  Author: r. v. c. guido, t. l. balliano, a. d. andricopulo, g. oliva
  Keywords: irreversible inhibitor complex, trypanosoma cruzi, x-ray, glycolysis, glycosome, nad, oxidoreductase
  
• 3dqw.pdb. transferase 09-jul-08 3dqw Mg
  Title: c-src kinase domain thr338ile mutant in complex with atpgs
  Author: m. azam, m. a. seeliger, n. gray, j. kuriyan, g. q. daley
  Keywords: kinase, active, gatekeeper, alternative splicing, atp- binding, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinas...
  
• 3dqx.pdb. transferase 09-jul-08 3dqx
  Title: chicken c-src kinase domain in complex with atpgs
  Author: m. azam, m. a. seeliger, n. gray, j. kuriyan, g. q. daley
  Keywords: kinase, active, alternative splicing, atp-binding, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
  
• 3dsl.pdb. hydrolase 13-jul-08 3dsl Zn Ca
  Title: the three-dimensional structure of bothropasin, the main hemorrhagic factor from bothrops jararaca venom.
  Author: j. r. c. muniz, a. ambrosio, h. s. selistre-de-araujo, g. oliva, r. c. garratt, d. h. f. souza
  Keywords: metalloprotease, disintegrin, blood coagulation, cell adhesion, glycoprotein, hydrolase, metal- binding, protease, secreted, toxin, zinc, zymogen
  
• 3du7.pdb. cell cycle 17-jul-08 3du7 Cl Mg
  Title: tubulin-colchicine-phomopsin a: stathmin-like domain complex
  Author: a. cormier, m. marchand, r. b. ravelli, m. knossow, b. gigant
  Keywords: beta-tubulin, colchicine, gtpase, microtubule, phomopsin a, stathmin, tubulin, gtp-binding, nucleotide-binding, phosphoprotein, alternative splicing, coiled coil, cell cycle
  
• 3dw0.pdb. hydrolase 21-jul-08 3dw0
  Title: crystal structure of the class a carbapenemase kpc-2 at 1.6 angstrom resolution
  Author: s. petrella, n. ziental-gelus, c. mayer, v. jarlier, w. sougakoff
  Keywords: kpc-2, carbapenemase, antibiotic resistance, hydrolase
  
• 3dwh.pdb. ligase 22-jul-08 3dwh
  Title: structural and functional analysis of sra domain
  Author: c. qian, j. jakoncic, m. zhou
  Keywords: zinc-finger
  
• 3dyc.pdb. hydrolase 25-jul-08 3dyc Zn
  Title: structure of e322y alkaline phosphatase in complex with inorganic phosphate
  Author: j. g. zalatan, t. d. fenn, d. herschlag
  Keywords: hydrolase, magnesium, metal-binding, periplasm, phosphoprotein, zinc
  
• 3e22.pdb. cell cycle 05-aug-08 3e22 Mg
  Title: tubulin-colchicine-soblidotin: stathmin-like domain complex
  Author: a. cormier, m. marchand, r. b. ravelli, m. knossow, b. gigant
  Keywords: beta-tubulin, colchicine, gtpase, microtubule, soblidotin, stathmin, tubulin, cell cycle
  
• 3e2n.pdb. oxidoreductase 05-aug-08 3e2n Fe
  Title: engineering ascorbate peroxidase activity into cytochrome c peroxidase
  Author: t. l. poulos, y. t. meharenna, p. oertel
  Keywords: ascorbate peroxidase (apx), oxidoreductase
  
• 3e2o.pdb. oxidoreductase 05-aug-08 3e2o Fe
  Title: crystal structure of cytochrome c peroxidase, n184r mutant
  Author: t. l. poulos, y. t. meharenna, p. oertel
  Keywords: heme, hydrogen peroxide, iron, metal-binding, mitochondrion, organic radical, oxidoreductase, transit peptide
  
• 3e4o.pdb. transferase 12-aug-08 3e4o Mg Se
  Title: crystal structure of succinate bound state dctb
  Author: y. f. zhou, j. nan, b. y. nan, y. h. liang, s. panjikar, x. d. su
  Keywords: n-term helical dimerization domain, transferase
  
• 3e4p.pdb. transferase 12-aug-08 3e4p Sr
  Title: crystal structure of malonate occupied dctb
  Author: y. f. zhou, j. nan, b. y. nan, y. h. liang, s. panjikar, x. d. su
  Keywords: n-term helical dimerization domain, transferase
  
• 3e4q.pdb. transferase 12-aug-08 3e4q Ca
  Title: crystal structure of apo dctb
  Author: y. f. zhou, j. nan, b. y. nan, y. h. liang, s. panjikar, x. d. su
  Keywords: n-term helical dimerization domain, transferase
  
• 3e5c.pdb. ribonucleic acid 13-aug-08 3e5c Sr
  Title: crystal structure of the smk box (sam-iii) riboswitch with sam
  Author: c. lu
  Keywords: rna
  
• 3e5e.pdb. ribonucleic acid 13-aug-08 3e5e Sr
  Title: crystal structures of the smk box (sam-iii) riboswitch with sah
  Author: c. lu
  Keywords: rna
  
• 3e5f.pdb. ribonucleic acid 13-aug-08 3e5f Sr Se
  Title: crystal structures of the smk box (sam-iii) riboswitch with se-sam
  Author: c. lu
  Keywords: rna
  
• 3e5t.pdb. fluorescent protein 14-aug-08 3e5t
  Title: crystal structure analysis of fp611
  Author: h. nar, k. nienhaus, u. nienhaus, j. wiedenmann
  Keywords: luminescence, photoprotein, red fluorescent protein
  
• 3e5v.pdb. fluorescent protein 14-aug-08 3e5v
  Title: crystal structure analysis of eqfp611 double mutant t122r, n143s
  Author: h. nar, k. nienhaus, u. nienhaus, j. wiedenmann
  Keywords: luminescence, photoprotein, d2rfp630, cis- trans isomer, red fluorescent protein
  
• 3e5w.pdb. fluorescent protein 14-aug-08 3e5w
  Title: crystal structure analysis of fp611
  Author: h. nar, k. nienhaus, u. nienhaus, j. wiedenmann
  Keywords: luminescence, photoprotein, rfp639, eqfp611, cis trans isomer, red fluorescent protein
  
• 3e78.pdb. tpp binding protein 18-aug-08 3e78 Cl Ca
  Title: structure determination of the cancer-associated mycoplasma hyorhinis protein mh-p37
  Author: k. h. sippel, a. h. robbins, r. reutzel, j. domsic, r. mckenna
  Keywords: p37, tpp, cell membrane, lipoprotein, membrane, palmitate, transport, tpp binding protein
  
• 3e79.pdb. tpp binding protein 18-aug-08 3e79 Cl I Ca
  Title: structure determination of the cancer-associated mycoplasma hyorhinis protein mh-p37
  Author: k. h. sippel, a. h. robbins, r. reutzel, j. domsic, r. mckenna
  Keywords: p37, tpp, cell membrane, lipoprotein, membrane, palmitate, transport, tpp binding protein
  
• 3e8r.pdb. hydrolase 20-aug-08 3e8r Zn
  Title: crystal structure of catalytic domain of tace with hydroxamate inhibitor
  Author: p. orth
  Keywords: transmembrane, zinc, zymogen
  
• 3ea5.pdb. transport protein 24-aug-08 3ea5 Mg
  Title: kap95p binding induces the switch loops of rangdp to adopt the gtp-bound conformation: implications for nuclear import complex assembly dynamics
  Author: j. k. forwood, j. k. lonhienne, g. guncar, m. stewart, m. marfori, b. kobe
  Keywords: importin, ran, acetylation, cytoplasm, gtp- binding, host-virus interaction, nucleotide-binding, nucleus, phosphoprotein, protein transport, transport, transport protein
  
• 3ec1.pdb. hydrolase, signaling protein 28-aug-08 3ec1
  Title: structure of yqeh gtpase from geobacillus stearothermophilus (an atnos1 / atnoa1 ortholog)
  Author: j. sudhamsu, b. r. crane
  Keywords: atnos1, atnoa1, gtpase, trap, pvhl, hydrolase, signaling protein
  
• 3ech.pdb. transcription, transcription regulation 30-aug-08 3ech
  Title: the marr-family repressor mexr in complex with its antirepressor armr
  Author: m. s. wilke, n. c. j. strynadka
  Keywords: helix-turn-helix, protein-peptide complex, dna-binding, repressor, transcription, transcription regulation
  
• 3ecp.pdb. dna recombination/dna 01-sep-08 3ecp
  Title: crystal structure of tn5 transposase complexed with 5' phosphorylated transposon end dna
  Author: v. a. klenchin
  Keywords: ribonuclease h-like motif, protein-dna complex, synaptic complex, dna recombination/dna complex
  
• 3eeb.pdb. toxin 04-sep-08 3eeb Na
  Title: structure of the v. cholerae rtx cysteine protease domain
  Author: p. j. lupardus, a. shen, m. bogyo, k. c. garcia
  Keywords: repeats-in-toxin, rtx, martx, cysteine protease, inositol hexakisphosphate
  
• 3eer.pdb. oxidoreductase 05-sep-08 3eer Zn Se
  Title: high resolution structure of putative organic hydroperoxide resistance protein from vibrio cholerae o1 biovar eltor str. n16961
  Author: b. nocek, n. maltseva, k. kwon, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
  Keywords: organic hydroperoxide resistance protein, orhc, structural genomics, center for structural genomics of infectious diseases, oxidoreductase
  
• 3efo.pdb. protein transport 09-sep-08 3efo Zn
  Title: crystal structure of the mammalian copii-coat protein sec23/24 bound to the transport signal sequence of syntaxin 5
  Author: j. goldberg, j. d. mancias
  Keywords: coat protein, transport signal, disease mutation, endoplasmic reticulum, er-golgi transport, golgi apparatus, membrane, polymorphism, protein transport, transport
  
• 3eg9.pdb. protein transport 10-sep-08 3eg9 Zn
  Title: crystal structure of the mammalian copii-coat protein sec23/24 bound to the transport signal sequence of membrin
  Author: j. goldberg, j. d. mancias
  Keywords: vesicle transport, transport signal sequence, disease mutation, endoplasmic reticulum, er-golgi transport, golgi apparatus, membrane, polymorphism, protein transport, transport
  
• 3egd.pdb. protein transport 10-sep-08 3egd Zn
  Title: crystal structure of the mammalian copii-coat protein sec23a/24a complexed with the snare protein sec22 and bound to the transport signal sequence of vesicular stomatitis virus glycoprotein
  Author: j. goldberg, j. d. mancias
  Keywords: coiled coil, phosphoprotein, transmembrane
  
• 3egx.pdb. protein transport 11-sep-08 3egx Zn
  Title: crystal structure of the mammalian copii-coat protein sec23a/24a complexed with the snare protein sec22b and bound to the transport signal sequence of the snare protein bet1
  Author: j. goldberg, j. d. mancias
  Keywords: cytoplasm, coiled coil, phosphoprotein, transmembrane
  
• 3eh1.pdb. protein transport 11-sep-08 3eh1 Zn
  Title: crystal structure of the human copii-coat protein sec24b
  Author: j. goldberg, j. d. mancias
  Keywords: vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum, er-golgi transport, golgi apparatus, membrane, phosphoprotein, protein transport, transport
  
• 3eh2.pdb. protein transport 11-sep-08 3eh2 Zn
  Title: crystal structure of the human copii-coat protein sec24c
  Author: j. goldberg, j. d. mancias
  Keywords: vesicle transport, cytoplasm, endoplasmic reticulum, er-golgi transport, golgi apparatus, membrane, phosphoprotein, protein transport, transport
  
• 3eid.pdb. transferase/cell cycle 15-sep-08 3eid
  Title: cdk2/cyclina complexed with a pyrazolopyridazine inhibitor
  Author: k. steven, m. reno, j. alberti, d. price, l. kane-carson, v. knick, l. shewchuk, a. hassell, j. veal, m. peel
  Keywords: transferase/cell cycle complex
  
• 3ej1.pdb. transferase/cell cycle 17-sep-08 3ej1
  Title: cdk2/cyclina complexed with a pyrazolopyridazine inhibitor
  Author: k. stevens, m. reno, j. alberti, d. price, l. kane-carson, v. knick, l. shewchuk, a. hassell, j. veal, m. peel
  Keywords: transferase/cell cycle complex
  
• 3ejb.pdb. oxidoreductase/lipid transport 18-sep-08 3ejb Cl Fe
  Title: crystal structure of p450bioi in complex with tetradecanoic acid ligated acyl carrier protein
  Author: m. j. cryle, i. schlichting
  Keywords: oxidoreductase, oxidoreductase/lipid transport complex
  
• 3ejd.pdb. oxidoreductase/lipid transport 18-sep-08 3ejd Cl Fe
  Title: crystal structure of p450bioi in complex with hexadec-9z- enoic acid ligated acyl carrier protein
  Author: m. j. cryle, i. schlichting
  Keywords: oxidoreductase, oxidoreductase/lipid transport complex
  
• 3eje.pdb. oxidoreductase/lipid transport 18-sep-08 3eje Fe
  Title: crystal structure of p450bioi in complex with octadec-9z- enoic acid ligated acyl carrier protein
  Author: m. j. cryle, i. schlichting
  Keywords: oxidoreductase, oxidoreductase/lipid transport complex
  
• 3elb.pdb. transferase 22-sep-08 3elb Se
  Title: human ctp: phosphoethanolamine cytidylyltransferase in complex with cmp
  Author: t. karlberg, m. welin, j. andersson, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, l. lehtio, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. wikstrom, m. wisniewska, h. schuler, structural genomics consortium (sgc)
  Keywords: cmp, ctp, phosphoethanolamine, cytidylyltransferase, sgc, structural genomics consortium, nucleotidyltransferase, phospholipid biosynthesis, transferase
  
• 3eln.pdb. oxidoreductase 22-sep-08 3eln Fe
  Title: a putative fe2+-bound persulfenate intermediate in cysteine dioxygenase
  Author: c. r. simmons, m. h. stipanuk, p. a. karplus
  Keywords: non-heme dioxygenases, fe2+ metalloenzyme, cysteine, taurine, thioether, dioxygenase, iron, metal- binding, oxidoreductase, phosphoprotein, thioether bond
  
• 3ems.pdb. hydrolase 25-sep-08 3ems Cl Na
  Title: effect of ariginine on lysozyme
  Author: l. ito, k. shiraki, t. matsuura, h. yamaguhi
  Keywords: hydrolase, glycosidase, bacteriolytic enzyme, arginine, allergen, antimicrobial
  
• 3eol.pdb. lyase 28-sep-08 3eol
  Title: 2.0a crystal structure of isocitrate lyase from brucella melitensis (p43212)
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: melitensis, isocitrate, lyase, seattle structural genomics center for infectious disease, ssgcid
  
• 3eom.pdb. oxidoreductase 28-sep-08 3eom
  Title: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from burkholderia pseudomallei
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: pseudomallei, glutaryl-coa, dehydrogenase, seattle structural genomics center for infectious disease, ssgcid, oxidoreductase
  
• 3eon.pdb. oxidoreductase 28-sep-08 3eon F
  Title: 2.55a crystal structure of native glutaryl-coa dehydrogenase from burkholderia pseudomallei in complex with a small molecule
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: pseudomallei, glutaryl-coa, dehydrogenase, seattle structural genomics center for infectious disease, ssgcid, oxidoreductase
  
• 3eoo.pdb. lyase 28-sep-08 3eoo
  Title: 2.9a crystal structure of methyl-isocitrate lyase from burkholderia pseudomallei
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: pseudomallei, methyl-isocitrate, lyase, seattle structural genomics center for infectious disease, ssgcid
  
• 3epp.pdb. transferase 29-sep-08 3epp
  Title: crystal structure of mrna cap guanine-n7 methyltransferase (rnmt) in complex with sinefungin
  Author: m. f. amaya, h. zeng, p. loppnau, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. botchkarev, j. min, a. n. plotnikov, h. wu, structural genomics consortium (sgc)
  Keywords: rnmt, sinefungin, structural genomics, structural genomics consortium, sgc, alternative splicing, mrna capping, mrna processing, nucleus, phosphoprotein, rna-binding, s-adenosyl-l- methionine
  
• 3equ.pdb. biosynthetic protein 01-oct-08 3equ Se
  Title: crystal structure of penicillin-binding protein 2 from neisseria gonorrhoeae
  Author: a. j. powell, a. m. deacon, r. a. nicholas, c. davies
  Keywords: class b transpeptidase, cell division, cell inner membrane, cell membrane, cell shape, cell wall biogenesis/degradation, peptidoglycan synthesis, biosynthetic protein
  
• 3eqv.pdb. biosynthetic protein 01-oct-08 3eqv
  Title: crystal structure of penicillin-binding protein 2 from neisseria gonorrhoeae containing four mutations associated with penicillin resistance
  Author: a. j. powell, a. m. deacon, r. a. nicholas, c. davies
  Keywords: class b transpeptidase, penicillin resistance, cell division, cell inner membrane, cell membrane, cell shape, cell wall biogenesis/degradation, peptidoglycan synthesis, biosynthetic protein
  
• 3erm.pdb. structural genomics, unknown function 02-oct-08 3erm Se
  Title: the crystal structure of a conserved protein with unknown function from pseudomonas syringae pv. tomato str. dc3000
  Author: k. tan, m. zhou, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: ppspto1197, seudomonas syringae pv. tomato str. dc3000, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3erz.pdb. oxidoreductase 03-oct-08 3erz Hg Zn Ca
  Title: directing noble metal ion chemistry within a designed ferritin protein. mercury ions on the three-fold channel
  Author: l. di costanzo, d. w. christianson
  Keywords: nanoparticle, 3-fold channel, mercury ions, iron, iron storage, metal-binding, oxidoreductase, phosphoprotein
  
• 3es3.pdb. oxidoreductase 03-oct-08 3es3 Au Ca
  Title: directing noble metal ion chemistry within a designed ferritin protein. the complex with gold ions. ferritin h8- h9x mutant
  Author: l. di costanzo, d. w. christianson
  Keywords: gold ions, ferritin, mutant, iron, iron storage, metal-binding, oxidoreductase, phosphoprotein
  
• 3es7.pdb. isomerase, lyase 04-oct-08 3es7 Mg
  Title: crystal structure of divergent enolase from oceanobacillus iheyensis complexed with mg and l-malate.
  Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgrc, target 9375a, enolase superfamily, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, isomerase, lyase
  
• 3es8.pdb. isomerase, lyase 04-oct-08 3es8 Mg
  Title: crystal structure of divergent enolase from oceanobacillus iheyensis complexed with mg and l-malate.
  Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgrc, target 9375a, enolase superfamily, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, isomerase, lyase
  
• 3esi.pdb. structural genomics, unknown function 06-oct-08 3esi
  Title: crystal structure of an uncharacterized protein from erwinia carotovora subsp. atroseptica. northeast structural genomics target ewr179
  Author: j. seetharaman, s. lew, h. wang, h. janjua, e. l. foote, r. xiao, r. nair, j. k. everett, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 3eth.pdb. lyase 08-oct-08 3eth Mg
  Title: crystal structure of e. coli purk in complex with mgatp
  Author: h. m. holden, j. b. thoden
  Keywords: purine biosynthesis, antimicrobial, atp-binding, decarboxylase, lyase, nucleotide-binding
  
• 3etj.pdb. lyase 08-oct-08 3etj Cl Mg
  Title: crystal structure e. coli purk in complex with mg, adp, and pi
  Author: h. m. holden, j. b. thoden
  Keywords: purine biosynthesis, antimicrobial, atp-binding, decarboxylase, lyase, nucleotide-binding
  
• 3etk.pdb. hydrolase 08-oct-08 3etk Mg
  Title: crystal structure of an uncharacterized metal-dependent hydrolase from pyrococcus furiosus
  Author: j. b. bonanno, j. freeman, k. t. bain, s. hu, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, hydrolase
  
• 3etn.pdb. isomerase 08-oct-08 3etn Se
  Title: crystal structure of putative phosphosugar isomerase involved in capsule formation (yp_209877.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative phosphosugar isomerase involved in capsule formation, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, isomerase, unknown function
  
• 3etp.pdb. transferase 08-oct-08 3etp
  Title: the crystal structure of the ligand-binding domain of the ephb2 receptor at 2.0 a resolution
  Author: y. goldgur, s. paavilainen, d. b nikolov, j. p. himanen
  Keywords: tyrosine kinase, alternative splicing, atp- binding, glycoprotein, kinase, membrane, nucleotide-binding, phosphoprotein, receptor, transferase, transmembrane, tyrosine-protein kinase
  
• 3eu8.pdb. hydrolase 09-oct-08 3eu8 Cl K Se
  Title: crystal structure of putative glucoamylase (yp_210071.1) from bacteroides fragilis nctc 9343 at 2.12 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative glucoamylase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function, hydrolase
  
• 3eua.pdb. isomerase 09-oct-08 3eua Se
  Title: crystal structure of yurp protein (np_391141.1) from bacillus subtilis at 1.90 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative fructose-aminoacid-6-phosphate deglycase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, isomerase
  
• 3eum.pdb. deoxyribonucleic acid 10-oct-08 3eum K
  Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6066
  Author: n. h. campbell, g. parkinson, s. neidle
  Keywords: oxtyricha nova, bsu-6066, bsu6066, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
  
• 3euw.pdb. oxidoreductase 11-oct-08 3euw Na Se
  Title: crystal structure of a myo-inositol dehydrogenase from corynebacterium glutamicum atcc 13032
  Author: d. kumaran, a. mahmood, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgxrc, myo- inositol dehydrogenase, oxidoreductase, tetramer, beta sandwich and rossmann fold, structural genomics, new york sgx research center for structural genomics
  
• 3evj.pdb. hydrolase inhibitor 13-oct-08 3evj
  Title: intermediate structure of antithrombin bound to the natural pentasaccharide
  Author: j. a. huntington, k. j. belzar
  Keywords: heparin, blood coagulation, disease mutation, glycoprotein, heparin-binding, polymorphism, protease inhibitor, secreted, serine protease inhibitor, thrombophilia, hydrolase inhibitor
  
• 3evn.pdb. oxidoreductase 13-oct-08 3evn
  Title: crystal structure of putative oxidoreductase from streptococcus agalactiae 2603v/r
  Author: v. n. malashkevich, r. toro, a. j. meyer, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: crystal structure,protein structure initiative, new york structural genomix research consortium, nysgxrc, oxidoreductase, psi-2, new york sgx research center for structural genomics
  
• 3evt.pdb. oxidoreductase 13-oct-08 3evt
  Title: crystal structure of phosphoglycerate dehydrogenase from lactobacillus plantarum
  Author: j. b. bonanno, m. gilmore, k. t. bain, j. do, p. sampathkumar, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: dehydrogenase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, oxidoreductase
  
• 3evx.pdb. ligase 13-oct-08 3evx Se
  Title: crystal structure of the human e2-like ubiquitin-fold modifier conjugating enzyme 1 (ufc1). northeast structural genomics consortium target hr41
  Author: f. forouhar, m. abashidze, j. seetharaman, c. k. ho, h. janjua, k. cunningham, l-. c. ma, r. xiao, m. c. baran, t. b. acton, b. rost, g. t. montelinoe, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, polymorphism, ubl conjugation pathway, ligase
  
• 3evy.pdb. hydrolase 13-oct-08 3evy
  Title: crystal structure of a fragment of a putative type i restriction enzyme r protein from bacteroides fragilis
  Author: j. b. bonanno, m. gilmore, k. t. bain, s. miller, p. sampathkumar, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, hydrolase