Recent PDB releases or updates: week of 12 September 2008

• 1c1c.pdb. transferase 21-jul-99 1c1c
  Title: crystal structure of hiv-1 reverse transcriptase in complex with tnk-6123
  Author: a. l. hopkins, j. ren, h. tanaka, m. baba, m. okamato, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, drug design
  
• 1c1y.pdb. signaling protein 22-jul-99 1c1y Mg Ca
  Title: crystal structure of rap.gmppnp in complex with the ras- binding-domain of c-raf1 kinase (rafrbd).
  Author: n. nassar
  Keywords: protein-protein complex, effectors
  
• 1urw.pdb. serine/threonine-protein kinase 11-nov-03 1urw
  Title: cdk2 in complex with an imidazo[1,2-b]pyridazine
  Author: k. f. byth, n. cooper, j. d. culshaw, d. w. heaton, s. e. oakes, c. a. minshull, r. a. norman, r. a. pauptit, j. a. yucker, j. breed, a. pannifer, s. rowsell, j. j. stanway, a. l. valentine, a. p. thomas
  Keywords: mitosis, transferase
  
• 2a15.pdb. unknown function 17-jun-05 2a15
  Title: x-ray crystal structure of rv0760 from mycobacterium tuberculosis at 1.68 angstrom resolution
  Author: c. r. garen, m. m. cherney, m. n. g. james, tb structural genomics consortium (tbsgc)
  Keywords: structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
  
• 2dq0.pdb. ligase 18-may-06 2dq0
  Title: crystal structure of ph0710 with ssa
  Author: y. itoh, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: homodimer, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2i0w.pdb. antifungal protein 11-aug-06 2i0w Cl
  Title: crystal structure analysis of np24-i, a thaumatin-like protein
  Author: c. chakrabarti, r. ghosh
  
  
• 2jjq.pdb. transferase 17-apr-08 2jjq
  Title: the crystal structure of pyrococcus abyssi trna (uracil-54, c5)-methyltransferase in complex with s-adenosyl-l- homocysteine
  Author: h. walbott, n. leulliot, h. grosjean, b. golinelli-pimpaneau
  Keywords: methyltransferase, trna methyltransferase, s-adenosyl-l-methionine, iron, 4fe-4s, transferase, iron-sulfur
  
• 2jtk.pdb. signaling protein 02-aug-07 2jtk He Hg (NMR, 20 structures)
  Title: a functional domain of a wnt signal protein
  Author: l. chen, y. shao, j. huang, j. zheng
  Keywords: domain, developmental protein, glycoprotein, secreted, wnt signaling pathway, signaling protein
  
• 2k37.pdb. photosynthesis 23-apr-08 2k37 Hg (NMR, 9 structures)
  Title: csma
  Author: m. pedersen, j. dittmer, j. underhaug, m. miller, n. c. nielsen
  Keywords: bacteriochlorophyll, chlorophyll, chlorosome, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport
  
• 2k42.pdb. signaling protein 27-may-08 2k42 He Hg (NMR, 20 structures)
  Title: solution structure of the gtpase binding domain of wasp in complex with espfu, an ehec effector
  Author: h. -c. cheng, b. m. skehan, k. g. campellone, j. m. leong, m. k. rosen
  Keywords: espfu, gbd, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein
  
• 2k78.pdb. heme-binding protein 06-aug-08 2k78 He Hg Zn (NMR, 30 structures)
  Title: solution structure of the isdc neat domain bound to zinc protoporphyrin
  Author: v. a. villareal, r. m. pilpa, s. a. robson, e. a. fadeev, r. t. clubb
  Keywords: nmr complex, heme, isd, isdc, cell wall, iron, metal-binding, peptidoglycan-anchor, secreted, transport protein, heme-binding protein
  
• 2nny.pdb. transcription/dna 24-oct-06 2nny
  Title: crystal structure of the ets1 dimer dna complex.
  Author: e. p. lamber, g. s. kachalova, m. wilmanns
  Keywords: protein-dna complex, transcription/dna complex
  
• 2o2c.pdb. isomerase 29-nov-06 2o2c
  Title: crystal structure of phosphoglucose isomerase from t. brucei containing glucose-6-phosphate in the active site
  Author: d. arsenieva, g. h. mazock, b. l. appavu, c. j. jeffery
  Keywords: isomerase
  
• 2o2d.pdb. isomerase 29-nov-06 2o2d
  Title: crystal structure of phosphoglucose isomerase from trypanosoma brucei complexed with citrate
  Author: d. arsenieva, g. h. mazock, b. l. appavu, c. j. jeffery
  Keywords: isomerase
  
• 2pvq.pdb. transferase 10-may-07 2pvq
  Title: crystal structure of ochrobactrum anthropi glutathione transferase cys10ala mutant with glutathione bound at the h-site
  Author: n. allocati, l. federici, m. masulli, b. favaloro, c. di ilio
  Keywords: glutathione, h-site, transferase
  
• 2pyg.pdb. isomerase 16-may-07 2pyg Ca
  Title: azotobacter vinelandii mannuronan c-5 epimerase alge4 a- module
  Author: h. j. rozeboom, t. m. bjerkan, k. h. kalk, h. ertesvag, s. holtan, f. l. aachmann, s. valla, b. w. dijkstra
  Keywords: epimerase, isomerase
  
• 2pyh.pdb. isomerase 16-may-07 2pyh Ca
  Title: azotobacter vinelandii mannuronan c-5 epimerase alge4 a- module complexed with mannuronan trisaccharide
  Author: h. j. rozeboom, t. m. bjerkan, k. h. kalk, h. ertesvag, s. holtan, f. l. aachman, s. valla, b. w. dijkstra
  Keywords: epimerase, mannuronic acid, isomerase
  
• 2qdn.pdb. immune system 21-jun-07 2qdn
  Title: crystal structure of mouse gitrl
  Author: k. chattopadhyay, u. a. ramagopal, s. g. nathenson, s. c. almo
  Keywords: immune system
  
• 2qih.pdb. cell adhesion 04-jul-07 2qih Cl
  Title: crystal structure of 527-665 fragment of uspa1 protein from moraxella catarrhalis
  Author: r. conners, r. l. brady
  Keywords: cell adhesion
  
• 2rgi.pdb. metal binding protein 03-oct-07 2rgi Na
  Title: crystal structure of ca2+-free s100a2 at 1.6 a resolution
  Author: m. koch, j. diez, g. fritz
  Keywords: ef-hand, metal binding protein
  
• 2rky.pdb. cell adhesion 18-oct-07 2rky K
  Title: crystal structure of the fourth and fifth fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1
  Author: r. j. bingham
  Keywords: secreted, sulfation, cell wall, peptidoglycan-anchor, virulence
  
• 2rkz.pdb. cell adhesion 18-oct-07 2rkz
  Title: crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1
  Author: r. j. bingham
  Keywords: secreted, sulfation, cell wall, peptidoglycan-anchor, virulence
  
• 2rl0.pdb. cell adhesion 18-oct-07 2rl0
  Title: crystal structure of the fourth and fifth fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-5
  Author: r. j. bingham
  Keywords: secreted, sulfation, cell wall, peptidoglycan-anchor, virulence
  
• 2v6z.pdb. transferase 24-jul-07 2v6z He Hg (NMR, 20 structures)
  Title: solution structure of amino terminal domain of human dna polymerase epsilon subunit b
  Author: t. nuutinen, h. tossavainen, k. fredriksson, p. pirila, p. permi, h. pospiech, j. e. syvaoja
  Keywords: dna polymerase epsilon, dpoe2, transferase, aaa protein family
  
• 2vkz.pdb. transferase 07-jan-08 2vkz
  Title: structure of the cerulenin-inhibited fungal fatty acid synthase type i multienzyme complex
  Author: p. johansson, b. wiltschi, p. kumari, b. kessler, c. vonrhein, j. vonck, d. oesterhelt, m. grininger
  Keywords: phosphorylation, phosphopantetheine, fatty acid synthase, multifunctional enzyme, oxidoreductase, lipid synthesis, fas, nad, nadp, lyase, cerulenin, hydrolase, fatty acid biosynthesis
  
• 2vo8.pdb. hydrolase 08-feb-08 2vo8
  Title: cohesin module from clostridium perfringens atcc13124 family 33 glycoside hydrolase.
  Author: k. gregg, j. j. adams, e. a. bayer, a. b. boraston, s. p. smith
  Keywords: cohesin, high affinity, glycoside hydrolase, clostridium perfringens
  
• 2vpa.pdb. oxidoreductase 27-feb-08 2vpa
  Title: high resolution crystal structure of the antibiotic resistance protein nima from deinococcus radiodurans
  Author: h. -k. s. leiros, c. tedesco, s. m. mcsweeney
  Keywords: atomic resolution, antibiotic resistance, deinococcus radiodurans, oxidoreductase
  
• 2vs1.pdb. transferase 17-apr-08 2vs1
  Title: the crystal structure of pyrococcus abyssi trna (uracil-54, c5)-methyltransferase in complex with s-adenosyl-l- homocysteine
  Author: h. walbott, n. leulliot, h. grosjean, b. golinelli-pimpaneau
  Keywords: methyltransferase, trna methyltransferase, s-adenosyl-l-methionine, iron, 4fe-4s, transferase, iron-sulfur
  
• 2vv5.pdb. membrane protein 03-jun-08 2vv5
  Title: the open structure of mscs
  Author: w. wang, c. dong, k. a. johnson, j. h. naismith
  Keywords: transmembrane, inner membrane, membrane structure, membrane protein, membrane, transport, open channel, ionic channel
  
• 2vvo.pdb. isomerase 10-jun-08 2vvo
  Title: crystal structure of mycobacterium tuberculosis ribose-5- phosphate isomerase b in complex with alpha d-allose 6- phosphate
  Author: a. k. roos, s. mariano, e. kowalinski, l. salmon, s. l. mowbray
  Keywords: rv2465c, isomerase, rare sugar, carbohydrate metabolism, pentose phosphate pathway
  
• 2vvp.pdb. isomerase 10-jun-08 2vvp
  Title: crystal structure of mycobacterium tuberculosis ribose-5- phosphate isomerase b in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate
  Author: e. kowalinski, a. k. roos, s. mariano, l. salmon, s. l. mowbray
  Keywords: rv2465c, isomerase, rare sugar, carbohydrate metabolism, pentose phosphate pathway
  
• 2vvq.pdb. isomerase 10-jun-08 2vvq
  Title: crystal structure of mycobacterium tuberculosis ribose-5- phosphate isomerase b in complex with the inhibitor 5- deoxy-5-phospho-d-ribonate
  Author: e. kowalinski, a. k. roos, s. mariano, l. salmon, s. l. mowbray
  Keywords: rpib, rv2465c, isomerase, carbohydrate metabolism
  
• 2vvr.pdb. isomerase 11-jun-08 2vvr
  Title: crystal structure of the h99n mutant of ribose-5-phosphate isomerase b from e. coli soaked with ribose 5-phosphate
  Author: a. k. roos, s. l. mowbray
  Keywords: isomerase, carbohydrate metabolism, pentose phosphate pathway
  
• 2z76.pdb. isomerase 16-aug-07 2z76
  Title: x-ray crystal structure of rv0760c from mycobacterium tuberculosis at 1.82 angstrom resolution
  Author: m. m. cherney, c. r. garen, m. n. g. james, tb structural genomics consortium (tbsgc)
  Keywords: structural genomics, tb structural genomics consortium, tbsgc, isomerase
  
• 2z77.pdb. isomerase 16-aug-07 2z77
  Title: x-ray crystal structure of rv0760c from mycobacterium tuberculosis in complex with estradiol-17beta-hemisuccinate
  Author: m. m. cherney, c. r. garen, m. n. g. james, tb structural genomics consortium (tbsgc)
  Keywords: complex with estradiol-17beta- hemisuccinate, structural genomics, tb structural genomics consortium, tbsgc, isomerase
  
• 2z7a.pdb. isomerase 17-aug-07 2z7a
  Title: x-ray crystal structure of rv0760c from mycobacterium tuberculosis at 2.10 angstrom resolution
  Author: m. m. cherney, c. r. garen, m. n. g. james, tb structural genomics consortium (tbsgc)
  Keywords: structural genomics, tb structural genomics consortium, tbsgc, isomerase
  
• 2zlz.pdb. ligase 10-apr-08 2zlz Zn
  Title: crystal structure of the e. coli glutamyl-trnaasp synthetase complexed to l-glu at 1.75 a resolution
  Author: m. blaise, v. olieric, c. sauter, d. kern
  Keywords: queuosine, trna modification, glutamyl- trna synthetase, ligase
  
• 3b9i.pdb. cytokine 05-nov-07 3b9i
  Title: crystal structure of mouse gitrl at 2.5 a.
  Author: k. chattopadhyay, u. a. ramagopal, s. g. nathenson, s. c. almo
  Keywords: cytokine, unknown function
  
• 3brn.pdb. ligand binding protein 21-dec-07 3brn
  Title: crystal structure of am182 serotonin complex
  Author: b. j. mans, j. m. ribeiro, j. f. andersen
  Keywords: lipocalin, ligand binding protein
  
• 3bs2.pdb. ligand binding protein 21-dec-07 3bs2
  Title: crystal structure of monomine
  Author: b. j. mans, j. m. ribeiro, j. f. andersen
  Keywords: lipocalin, ligand binding protein
  
• 3bu1.pdb. ligand binding protein 31-dec-07 3bu1
  Title: crystal structure of monomine-histamine complex
  Author: b. j. mans, j. m. ribeiro, j. f. andersen
  Keywords: lipocalin, ligand binding protein
  
• 3bu9.pdb. ligand binding protein 02-jan-08 3bu9 Se
  Title: selenomethionine derivative of monomine l57,63,87,146m mutant
  Author: b. j. mans, j. m. ribeiro, j. f. andersen
  Keywords: lipocalin, ligand binding protein
  
• 3bwy.pdb. transferase 10-jan-08 3bwy Mg
  Title: crystal structure of human 108m catechol o- methyltransferase bound with s-adenosylmethionine and inhibitor dinitrocatechol
  Author: k. rutherford, i. le trong, r. e. stenkamp, w. w. parson
  Keywords: methyltransferase, polymorphism, rossmann fold, sam, dnc
  
• 3bxq.pdb. hormone 14-jan-08 3bxq He Hg Zn
  Title: the structure of a mutant insulin uncouples receptor binding from protein allostery. an electrostatic block to the tr transition
  Author: z. l. wan, k. huang, s. q. hu, j. whittaker, m. a. weiss
  Keywords: electrostatic block, protein allostery, receptor binding, hormone
  
• 3c56.pdb. lyase 30-jan-08 3c56 Zn
  Title: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(3-hydroxypropyl)- glycolohydroxamic acid bisphosphate, a competitive inhibitor
  Author: coincon m. , j. sygusch, p. potvin-dulude
  Keywords: fbp, aldolase, glycolysis, inhibitor, lyase, metal-binding, zinc
  
• 3cae.pdb. hydrolase 19-feb-08 3cae
  Title: structure of nnqqny as an insert in t7 endonuclease i
  Author: z. guo, d. eisenberg
  Keywords: amyloid, steric zipper, hydrolase
  
• 3cal.pdb. cell adhesion 20-feb-08 3cal
  Title: crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-5
  Author: r. j. bingham
  Keywords: pyrrolidone carboxylic acid, secreted, sulfation, cell wall, peptidoglycan-anchor, virulence
  
• 3cf1.pdb. transport protein 01-mar-08 3cf1 F Al
  Title: structure of p97/vcp in complex with adp/adp.alfx
  Author: j. m. davies, b. delabarre, a. t. brunger, w. i. weis
  Keywords: cdc48, erad, atpase, transport protein
  
• 3cf2.pdb. transport protein 01-mar-08 3cf2
  Title: structure of p97/vcp in complex with adp/amp-pnp
  Author: j. m. davies, b. delabarre, a. t. brunger, w. i. weis
  Keywords: cdc48, erad, atpase, transport protein
  
• 3cf3.pdb. transport protein 01-mar-08 3cf3
  Title: structure of p97/vcp in complex with adp
  Author: j. m. davies, b. delabarre, a. t. brunger, w. i. weis
  Keywords: cdc48, erad, atpase, transport protein
  
• 3cf6.pdb. signaling protein/gtp-binding protein 02-mar-08 3cf6
  Title: structure of epac2 in complex with cyclic-amp and rap
  Author: h. rehmann, e. arias-palomo, m. a. hadders, f. schwede, o. llorca, j. l. bos
  Keywords: signaling protein/gtp-binding protein complex
  
• 3cia.pdb. hydrolase 11-mar-08 3cia Zn
  Title: crystal structure of cold-aminopeptidase from colwellia psychrerythraea
  Author: c. bauvois, l. jacquamet, f. borel, j. -l. ferrer
  Keywords: hydrolase
  
• 3cir.pdb. oxidoreductase 11-mar-08 3cir Fe
  Title: e. coli quinol fumarate reductase frda t234a mutation
  Author: t. m. tomasiak, e. maklashina, g. cecchini, t. m. iverson
  Keywords: tricarboxylic acid cycle, oxidoreductase
  
• 3ckm.pdb. unknown function 16-mar-08 3ckm Se
  Title: crystal structure of the yram c-terminal domain
  Author: j. vijayalakshmi, m. a. saper
  Keywords: periplasmic-binding protein, lipoprotein, unliganded, unknown function
  
• 3cky.pdb. oxidoreductase 18-mar-08 3cky
  Title: structural and kinetic properties of a beta-hydroxyacid dehydrogenase involved in nicotinate fermentation
  Author: s. reitz, a. alhapel, a. j. pierik, l. -o. essen
  Keywords: two domain enzyme, oxidoreductase
  
• 3cs1.pdb. metal binding protein 08-apr-08 3cs1
  Title: flagellar calcium-binding protein (fcabp) from t. cruzi
  Author: j. b. ames, j. e. ladner, j. n. wingard, h. robinson, a. fisher
  Keywords: calcium-binding, myristoylated, palmitoylated, sensor, membrane targeting, ef-hand, cell projection, cilium, flagellum, metal binding protein
  
• 3cu7.pdb. immune system 16-apr-08 3cu7 Cd
  Title: human complement component 5
  Author: f. fredslund, g. r. andersen
  Keywords: innate immunity, membrane attack complex, polymorphism, secreted, immune system
  
• 3cv0.pdb. transport protein 17-apr-08 3cv0
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei phosphoglucoisomerase (pgi) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvl.pdb. transport protein 18-apr-08 3cvl
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei phosphofructokinase (pfk) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvm.pdb. blood clotting 18-apr-08 3cvm He Hg
  Title: high resolution structure of a stable plasminogen activator inhibitor type-1 in its protease cleaved form
  Author: j. k. jensen, p. g. w. gettins
  Keywords: cleaved serpin, glycoprotein, plasminogen activation, polymorphism, protease inhibitor, secreted, serine protease inhibitor, blood clotting
  
• 3cvn.pdb. transport protein 18-apr-08 3cvn
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to t. brucei glyceraldehyde-3-phosphate dehydrogenase (gapdh) pts1 peptide
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvp.pdb. transport protein 18-apr-08 3cvp
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to pts1 peptide (10-skl)
  Author: p. sampathkumar, c. roach, p. a. m michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvq.pdb. transport protein 18-apr-08 3cvq
  Title: structure of peroxisomal targeting signal 1 (pts1) binding domain of trypanosoma brucei peroxin 5 (tbpex5)complexed to pts1 peptide (7-skl)
  Author: p. sampathkumar, c. roach, p. a. m. michels, w. g. j. hol
  Keywords: tpr protein, peroxin 5, pex5, pts1 binding domain, protein-peptide complex, receptor, tpr repeat, transport protein
  
• 3cvs.pdb. hydrolase/dna 19-apr-08 3cvs
  Title: crystal structure of an alka host/guest complex 8oxoguanine:adenine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 8oxoguanine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cvt.pdb. hydrolase/dna 19-apr-08 3cvt
  Title: crystal structure of an alka host/guest complex 8oxoguanine:cytosine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 8oxoguanine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cw7.pdb. hydrolase/dna 21-apr-08 3cw7
  Title: crystal structure of an alka host/guest complex 8oxoguanine:cytosine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 8oxoguanine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cwa.pdb. hydrolase/dna 21-apr-08 3cwa
  Title: crystal structure of an alka host/guest complex 8oxoguanine:cytosine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 8oxoguanine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cwo.pdb. de novo protein 22-apr-08 3cwo
  Title: a beta/alpha-barrel built by the combination of fragments from different folds
  Author: t. a. m. bharat, s. eisenbeis, k. zeth, b. hocker
  Keywords: chey, hisf, half barrel, de novo protein
  
• 3cws.pdb. hydrolase/dna 22-apr-08 3cws F
  Title: crystal structure of an alka host/guest complex 2'-fluoro- 2'-deoxyinosine:thymine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 2'-fluoro-2'-deoxyinosine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cwt.pdb. hydrolase/dna 22-apr-08 3cwt F
  Title: crystal structure of an alka host/guest complex 2'-fluoro- 2'-deoxyinosine:adenine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 2'-fluoro-2'-deoxyinosine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cwu.pdb. hydrolase/dna 22-apr-08 3cwu F
  Title: crystal structure of an alka host/guest complex 2'-fluoro- 2'-deoxy-1,n6-ethenoadenine:thymine base pair
  Author: b. r. bowman, s. lee, s. wang, g. l. verdine
  Keywords: 2'-fluoro-2'-deoxy-1, n6-ethenoadenine, dna repair, host/guest complex, dna structure, dna damage, hydrolase, hydrolase/dna complex
  
• 3cyi.pdb. oxidoreductase 25-apr-08 3cyi Mg
  Title: crystal structure of human sulfiredoxin (srx) in complex with atp:mg2+
  Author: t. j jonsson, m. s. murray, l. c. johnson, w. t. lowther
  Keywords: antioxidant, atp-binding, cytoplasm, magnesium, nucleotide-binding, oxidoreductase
  
• 3d0q.pdb. transferase 02-may-08 3d0q Se
  Title: crystal structure of calg3 from micromonospora echinospora determined in space group i222
  Author: e. bitto, s. singh, c. a. bingman, g. e. wesenberg, g. n. phillips jr.
  Keywords: glycosyltransferase, enediyne antibiotic
  
• 3d0r.pdb. transferase 02-may-08 3d0r
  Title: crystal structure of calg3 from micromonospora echinospora determined in space group p2(1)
  Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr.
  Keywords: glycosyltransferase, enediyne antibiotic
  
• 3d1k.pdb. oxygen binding 06-may-08 3d1k Fe
  Title: r/t intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(co)-beta(pentacoordinate) state
  Author: l. vitagliano, a. vergara, g. bonomi, a. merlino, l. mazzarella
  Keywords: intermediate r/t quaternary structure, oxidation pathway, heme, iron, metal-binding, oxygen transport, transport, acetylation, oxygen binding
  
• 3d21.pdb. oxidoreductase 07-may-08 3d21
  Title: crystal structure of a poplar wild-type thioredoxin h, pttrxh4
  Author: c. s. koh, c. didierjean, c. corbier, n. rouhier, j. p. jacquot, e. gelhaye
  Keywords: electron transport, transport, cytoplasm, redox-active center, oxidoreductase
  
• 3d22.pdb. oxidoreductase 07-may-08 3d22
  Title: crystal structure of a poplar thioredoxin h mutant, pttrxh4c61s
  Author: c. s. koh, c. didierjean, c. corbier, n. rouhier, j. p. jacquot, e. gelhaye
  Keywords: electron transport, cytoplasm, redox-active center, transport, oxidoreductase
  
• 3d40.pdb. transferase 13-may-08 3d40
  Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with diphosphate
  Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
  Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
  
• 3d41.pdb. transferase 13-may-08 3d41 Mg
  Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with mgamppnp and fosfomycin
  Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
  Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
  
• 3d5x.pdb. transferase 17-may-08 3d5x
  Title: crystal structure of an activated (thr->asp) polo-like kinase 1 (plk1) catalytic domain in complex with wortmannin.
  Author: r. a. elling, r. v. fucini, m. j. romanowski
  Keywords: plk1, catalytic domain, small-molecule inhibitor, kinase, transferase
  
• 3d72.pdb. signaling protein 20-may-08 3d72
  Title: 1.65 angstrom crystal structure of the cys71val variant in the fungal photoreceptor vvd
  Author: b. d. zoltowski, b. r. crane
  Keywords: photoreceptor, blue-light, lov, pas, vvd, signaling protein
  
• 3d9s.pdb. membrane protein 27-may-08 3d9s
  Title: human aquaporin 5 (aqp5)- high resolution x-ray structure
  Author: r. horsefield, k. norden, m. fellert, a. backmark, s. tornroth- horsefield, a. c. terwisscha van scheltinga, j. kvassman, p. kjellbom, u. johanson, r. neutze
  Keywords: aqp, aquaglyceroporin, membrane protein, water transport, x-ray diffraction, lipid, phosphatidylserine, psf, npa, ar/r, water channel, glycoprotein, membrane, transmembrane, transport
  
• 3dc1.pdb. transferase 03-jun-08 3dc1
  Title: crystal structure of kynurenine aminotransferase ii complex with alpha-ketoglutarate
  Author: q. han, t. cai, d. a. tagle, h. robinson, j. li
  Keywords: plp-dependent transferase, aminotransferase, multifunctional enzyme, pyridoxal phosphate, alternative splicing, mitochondrion, transferase, transit peptide
  
• 3dg1.pdb. protein fibril 12-jun-08 3dg1
  Title: segment sstnvg derived from iapp
  Author: j. j. wiltzius, s. a. sievers, m. r. sawaya, d. cascio, d. eisenberg
  Keywords: iapp, sstnvg, amyloid, protein fibril
  
• 3dgj.pdb. protein fibril 13-jun-08 3dgj
  Title: nnfgail segment from islet amyloid polypeptide (iapp or amylin)
  Author: j. j. wiltzius, s. a. sievers, m. r. sawaya, d. cascio, d. eisenberg
  Keywords: amylin, amyloid, steric zipper, protein fibril
  
• 3dlb.pdb. nucleic acid binding protein/dna 26-jun-08 3dlb
  Title: crystal structure of the guide-strand-containing argonaute protein silencing complex
  Author: y. wang, g. sheng, d. j. patel
  Keywords: protein-dna complex, plasmid, nucleic acid binding protein/dna complex
  
• 3dle.pdb. transferase 27-jun-08 3dle Cl
  Title: crystal structure of hiv-1 reverse transcriptase in complex with gf128590.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gf128590, drug resistance, hydrolase, transferase
  
• 3dlg.pdb. transferase 27-jun-08 3dlg Cl F
  Title: crystal structure of hiv-1 reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, transferase, hydrolase
  
• 3dlh.pdb. nucleic acid binding protein/dna 27-jun-08 3dlh Mg
  Title: crystal structure of the guide-strand-containing argonaute protein silencing complex
  Author: y. wang, g. sheng, d. j. patel
  Keywords: protein-dna complex, plasmid, nucleic acid binding protein/dna complex
  
• 3dm2.pdb. transferase 30-jun-08 3dm2 Cl F
  Title: crystal structure of hiv-1 k103n mutant reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, k103n mutation, hydrolase, transferase
  
• 3dmf.pdb. transferase 01-jul-08 3dmf
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adomet
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, g1207 methyltransferase, s-adenosyl-l-methionine, translation, transferase
  
• 3dmg.pdb. transferase 01-jul-08 3dmg
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adohcy
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, n2 g1207 methyltransferase, s-adenosyl-l-homocysteine, translation, methyltransferase, transferase
  
• 3dmh.pdb. transferase 01-jul-08 3dmh
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adomet and guanosine
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, n2 g1207 methyltransferase, s-adenosyl-l-homocysteine, translation, methyltransferase, transferase
  
• 3dmj.pdb. transferase 01-jul-08 3dmj Cl F
  Title: crystal structure of hiv-1 v106a and y181c mutant reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, hydrolase, transferase
  
• 3dnl.pdb. viral protein 02-jul-08 3dnl (cryo-electron microscopy)
  Title: molecular structure for the hiv-1 gp120 trimer in the b12- bound state
  Author: m. j. borgnia, j. liu, a. bartesaghi, g. sapiro, s. subramaniam
  Keywords: palmitate, viral immunoevasion, virion, viral protein
  
• 3dnn.pdb. viral protein 02-jul-08 3dnn (cryo-electron microscopy)
  Title: molecular structure for the hiv-1 gp120 trimer in the unliganded state
  Author: m. j. borgnia, j. liu, a. bartesaghi, g. sapiro, s. subramaniam
  Keywords: palmitate, viral immunoevasion, virion, viral protein
  
• 3dno.pdb. viral protein 02-jul-08 3dno (cryo-electron microscopy)
  Title: molecular structure for the hiv-1 gp120 trimer in the cd4- bound state
  Author: m. j. borgnia, j. liu, a. bartesaghi, g. sapiro, s. subramaniam
  Keywords: palmitate, viral immunoevasion, virion, viral protein
  
• 3dok.pdb. transferase 04-jul-08 3dok Cl
  Title: crystal structure of k103n mutant hiv-1 reverse transcriptase in complex with gw678248.
  Author: p. p. chamberlain, j. ren, d. k. stammers
  Keywords: aids, nnrti, gw678248, drug resistance, hydrolase, transferase
  
• 3dol.pdb. transferase 04-jul-08 3dol Cl
  Title: crystal structure of l100i mutant hiv-1 reverse transcriptase in complex with gw695634.
  Author: p. p. chamberlain, j. ren, d. k. stammers
  Keywords: aids, nnrti, gw695634, drug resistance, hydrolase, transferase
  
• 3ds0.pdb. viral protein 11-jul-08 3ds0
  Title: hiv-1 capsid c-terminal domain mutant (n183a) in complex with an inhibitor of particle assembly (cai)
  Author: s. igonet, m. c. vaney, f. a. rey
  Keywords: capsid, mutant, inhibitor, assembly, polyprotein, complex (viral protein/peptide), mainly alpha
  
• 3ds1.pdb. viral protein 11-jul-08 3ds1
  Title: hiv-1 capsid c-terminal domain mutant (e187a) in complex with an inhibitor of particle assembly (cai)
  Author: m. -c. vaney, s. igonet, f. a. rey
  Keywords: capsid, mutant, inhibitor, assembly, polyprotein, complex (viral protein/peptide), mainly alpha
  
• 3ds2.pdb. viral protein 11-jul-08 3ds2
  Title: hiv-1 capsid c-terminal domain mutant (y169a)
  Author: m. -c. vaney, s. igonet, f. a. rey
  Keywords: capsid, mutant, assembly, polyprotein, mainly alpha, viral protein
  
• 3ds3.pdb. viral protein 11-jul-08 3ds3
  Title: hiv-1 capsid c-terminal domain mutant (y169a) in complex with an inhibitor of particle assembly (cai)
  Author: s. igonet, m. c. vaney, f. a. rey
  Keywords: capsid, mutant, inhibitor, assembly, polyprotein, complex (viral protein/peptide), mainly alpha
  
• 3ds4.pdb. viral protein 11-jul-08 3ds4
  Title: hiv-1 capsid c-terminal domain mutant (l211s) in complex with an inhibitor of particle assembly (cai)
  Author: s. igonet, m. c. vaney, f. a. rey
  Keywords: capsid, mutant, inhibitor, assembly, polyprotein, complex(viral protein/peptide), mainly alpha
  
• 3ds5.pdb. viral protein 11-jul-08 3ds5
  Title: hiv-1 capsid c-terminal domain mutnat (n183a)
  Author: s. igonet, m. c. vaney, f. a. rey
  Keywords: capsid, mutant, assembly, polyprotein, mainly alpha, viral protein
  
• 3dsq.pdb. ligase 14-jul-08 3dsq Cl Na
  Title: structure of desulfitobacterium hafniense pylsc, a pyrrolysyl trna synthetase
  Author: m. m. lee, m. k. chan
  Keywords: aminoacyl-trna synthetase, ligase
  
• 3dtj.pdb. viral protein 15-jul-08 3dtj
  Title: hiv-1 capsid c-terminal domain mutant (e187a)
  Author: s. igonet, m. c. vaney, f. a. rey
  Keywords: capsid, mutant, inhibitor, assembly, polyprotein, complex(viral protein/peptide), mainly alpha
  
• 3e77.pdb. transferase 18-aug-08 3e77
  Title: human phosphoserine aminotransferase in complex with plp
  Author: l. lehtio, t. karlberg, j. andersson, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, k. olesen, c. persson, j. sagemark, s. g. thorsell, l. tresaugues, s. van den berg, m. welin, m. wikstrom, m. wisniewska, j. weigelt, h. schueler, structural genomics consortium (sgc)
  Keywords: transferase
  
• 3eap.pdb. hydrolase activator 26-aug-08 3eap
  Title: crystal structure of the rhogap domain of arhgap11a
  Author: y. shen, l. shen, y. tong, w. tempel, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium, structural genomics consortium (sgc)
  Keywords: gap, structural genomics consortium, gtpase activation, phosphoprotein, polymorphism, hydrolase activator, sgc