Recent PDB releases or updates: week of 1 August 2008

• 2iof.pdb. hydrolase 10-oct-06 2iof Mg
  Title: crystal structure of phosphonoacetaldehyde hydrolase with sodium borohydride-reduced substrate intermediate
  Author: k. a. allen, s. d. lahiri, g. zhang, d. dunaway-mariano
  Keywords: haloacid dehalogenase superfamily
  
• 2j6e.pdb. immune system 28-sep-06 2j6e Zn Cd As
  Title: crystal structure of an autoimmune complex between a human igm rheumatoid factor and igg1 fc reveals a novel fc epitope and evidence for affinity maturation
  Author: s. duquerroy, e. a. stura, s. bressanelli, h. browne, d. beale, m. hamon, p. casali, m. -c. vaney, f. a. rey, b. j. sutton, m. j. taussig
  Keywords: immunoglobulin c region, membrane, glycoprotein, transmembrane, hypothetical protein, immune system, immunoglobulin domain
  
• 2jjx.pdb. transferase 23-apr-08 2jjx Mg
  Title: the crystal structure of ump kinase from bacillus anthracis (ba1797)
  Author: c. meier, l. g. carter, e. j. mancini, r. j. owens, d. i. stuart, r. m. esnouf, oxford protein production facility (oppf), structural proteomics in europe (spine)
  Keywords: structural proteomics in europe (spine)
  
• 2jt9.pdb. immune system 21-jul-07 2jt9 He Hg (NMR, 19 structures)
  Title: nmr structure of immunosuppressory peptide containing cyclolinopeptide x and antennapedia(43-58) sequences
  Author: l. jaremko, m. jaremko, i. zhukov, m. cebrat
  Keywords: cyclolinopeptide, immunosupression, antennapedia(43- 58), immune system
  
• 2jta.pdb. signaling protein 21-jul-07 2jta Hg (NMR, 20 structures)
  Title: nmr structure of immunosuppressory ubiquitin fragment is similar to related ubiquitin region.
  Author: m. jaremko, l. jaremko, i. zhukov, m. cebrat
  Keywords: immunosuppression, ubiquitin, peptide, signaling protein
  
• 2jv9.pdb. structural protein, protein binding 12-sep-07 2jv9 He Hg (NMR, 30 structures)
  Title: the solution structure of calponin homology domain from smoothelin-like 1
  Author: h. ishida, h. j. vogel, j. a. macdonald
  Keywords: smoothelin, smoothelin-like 1, calponin, calponin homology domain, structural protein, protein binding
  
• 2jzr.pdb. electron transport 15-jan-08 2jzr He Hg (NMR, 20 structures)
  Title: solution structure of the oxidized form (cys67-cys70) of the n-terminal domain of pilb from n. meningitidis.
  Author: m. quinternet, p. tsan, f. neiers, c. beaufils, s. boschi-muller, m. averlant-petit, g. branlant, m. cung
  Keywords: neisseria meningitidis, pilb, n-terminal domain, thioredoxin, electron transport, multifunctional enzyme, oxidoreductase, redox-active center, transport
  
• 2jzs.pdb. electron transport 15-jan-08 2jzs He Hg (NMR, 20 structures)
  Title: solution structure of the reduced form of the n-terminal domain of pilb from n. meningitidis.
  Author: m. quinternet, p. tsan, f. neiers, c. beaufils, s. boschi-muller, m. averlant-petit, g. branlant, m. cung
  Keywords: neisseria meningitidis, pilb, n-terminal domain, thioredoxin, electron transport, multifunctional enzyme, oxidoreductase, redox-active center, transport
  
• 2k2f.pdb. metal binding protein 01-apr-08 2k2f He Hg Ca (NMR, 20 structures)
  Title: solution structure of ca2+-s100a1-ryrp12
  Author: n. t. wright, k. m. varney, d. j. weber
  Keywords: cytoplasm, metal- binding, zinc, metal binding protein
  
• 2k3b.pdb. structural protein 30-apr-08 2k3b Hg (NMR, 10 structures)
  Title: seeing the invisible: structures of excited protein states by relaxation dispersion nmr
  Author: p. vallurupalli, f. d. hansen, l. e. kay
  Keywords: abp1p, ark1p, invisible state, nmr, acetylation, actin-binding, cytoplasm, cytoskeleton, phosphoprotein, sh3 domain, structural protein
  
• 2k3s.pdb. protein binding 15-may-08 2k3s He (NMR, 15 structures)
  Title: haddock-derived structure of the ch-domain of the smoothelin-like 1 complexed with the c-domain of apocalmodulin
  Author: h. ishida, m. a. borman, j. ostrander, h. j. vogel, j. a. macdonald
  Keywords: calponin homology domain, smoothelin- like 1, haddock model, ch-domain, coiled coil, acetylation, calcium, methylation, protein binding
  
• 2q8y.pdb. lyase/transferase 12-jun-07 2q8y
  Title: structural insight into the enzymatic mechanism of the phophothreonine lyase
  Author: y. -q. zhu, d. -c. wang, f. shao
  Keywords: lyase/transferase complex
  
• 2q9u.pdb. oxidoreductase 14-jun-07 2q9u Fe
  Title: crystal structure of the flavodiiron protein from giardia intestinalis
  Author: a. di matteo, f. m. scandurra, f. testa, e. forte, p. sarti, m. brunori, a. giuffre
  Keywords: beta lactamase like, oxidoreductase
  
• 2qjr.pdb. hydrolase 09-jul-07 2qjr F
  Title: dipepdyl peptidase iv in complex with inhibitor pzf
  Author: l. shenping
  Keywords: aminopeptidase, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, signal-anchor, transmembrane
  
• 2qka.pdb. oxidoreductase 10-jul-07 2qka Mn
  Title: structural and kinetic study of the differences between human and e.coli manganese superoxide dismutases
  Author: j. zheng, j. f. domsic, d. cabelli, r. mckenna, d. n. silverman
  Keywords: proton wire, acetylation, manganese, metal- binding, mitochondrion, oxidoreductase, polymorphism, transit peptide
  
• 2qkc.pdb. oxidoreductase 10-jul-07 2qkc Mn
  Title: structural and kinetic study of the differences between human and e.coli manganese superoxide dismutases
  Author: j. zheng, j. f. domsic, d. cabelli, r. mckenna, d. n. silverman
  Keywords: proton wire, acetylation, manganese, metal- binding, mitochondrion, oxidoreductase, polymorphism, transit peptide
  
• 2qlz.pdb. transcription 13-jul-07 2qlz Se
  Title: crystal structure of transcription factor pf0095 from pyrococcus furiosus
  Author: h. yang, g. l. lipscomb, r. a. scott, j. p. rose, b. c. wang
  
  
• 2qnv.pdb. nuclear protein 19-jul-07 2qnv
  Title: crystal structure of the pregnane x receptor bound to colupulone
  Author: d. g. teotico, j. bischof, m. r. redinbo
  Keywords: protein-ligand complex, alternative splicing, dna-binding, metal-binding, nucleus, polymorphism, receptor, transcription, transcription regulation, zinc, zinc-finger, nuclear protein
  
• 2qp3.pdb. transferase 23-jul-07 2qp3
  Title: identification and characterization of two amino acids critical for the substrate inhibition of sult2a1
  Author: y. c. hsieh
  Keywords: androsterone(adt), substrate inhibition, sulfotransferase, substrate binding orientation, bile acid catabolism, cytoplasm, lipid metabolism, steroid metabolism
  
• 2qp4.pdb. transferase 23-jul-07 2qp4
  Title: identification and characterization of two amino acids critical for the substrate inhibition of sult2a1
  Author: y. c. hsieh
  Keywords: androsterone(adt), substrate inhibition, sulfotransferase, substrate binding orientation, bile acid catabolism, cytoplasm, lipid metabolism, steroid metabolism
  
• 2qq1.pdb. structural protein 26-jul-07 2qq1
  Title: crystal structure of molybdenum cofactor biosynthesis (aq_061) other form from aquifex aeolicus vf5
  Author: j. jeyakanthan, s. mahesh, s. p. kanaujia, s. ramakumar, k. sekar, y. agari, a. ebihara, s. kuramitsu, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: mpt, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, structural protein
  
• 2qq3.pdb. lyase 26-jul-07 2qq3
  Title: crystal structure of enoyl-coa hydrates subunit i (gk_2039) other form from geobacillus kaustophilus hta426
  Author: j. jeyakanthan, s. p. kanaujia, k. sekar, a. ebihara, a. shinkai, s. kuramitsu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: b-oxidation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, lyase
  
• 2qq4.pdb. metal binding protein 26-jul-07 2qq4 Zn
  Title: crystal structure of iron-sulfur cluster biosynthesis protein iscu (ttha1736) from thermus thermophilus hb8
  Author: j. jeyakanthan, s. p. kanaujia, k. sekar, y. agari, a. ebihara, a. shinkai, s. kuramitsu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2qrm.pdb. transferase 28-jul-07 2qrm
  Title: glycogen phosphorylase b in complex with (1r)-3'-(4- nitrophenyl)-spiro[1,5-anhydro-d-glucitol-1,5'-isoxazoline]
  Author: g. gizilis, k. m. alexacou, e. d. chrysina, s. e. zographos, d. d. leonidas, n. g. oikonomakos
  Keywords: type 2 diabetes, acetylation, allosteric enzyme, carbohydrate metabolism, glycogen metabolism, glycosyltransferase, nucleotide-binding, phosphorylation, pyridoxal phosphate, transferase
  
• 2qrp.pdb. transferase 28-jul-07 2qrp
  Title: glycogen phosphorylase b in complex with (1r)-3'-(2- naphthyl)-spiro[1,5-anhydro-d-glucitol-1,5'-isoxazoline]
  Author: g. gizilis, k. m. alexacou, e. d. chrysina, s. e. zographos, d. d. leonidas, n. g. oikonomakos
  Keywords: type 2 diabetes, acetylation, allosteric enzyme, carbohydrate metabolism, glycogen metabolism, glycosyltransferase, nucleotide-binding, phosphorylation, pyridoxal phosphate, transferase
  
• 2qrq.pdb. transferase 28-jul-07 2qrq
  Title: glycogen phosphorylase b in complex with (1r)-3'-(4- methylphenyl)-spiro[1,5-anhydro-d-glucitol-1,5'- isoxazoline]
  Author: g. gizilis, k. m. alexacou, e. d. chrysina, s. e. zographos, d. d. leonidas, n. g. oikonomakos
  Keywords: type 2 diabetes, acetylation, allosteric enzyme, carbohydrate metabolism, glycogen metabolism, glycosyltransferase, nucleotide-binding, phosphorylation, pyridoxal phosphate, transferase
  
• 2qur.pdb. signaling protein, transferase 06-aug-07 2qur
  Title: crystal structure of f327a/k285p mutant of camp-dependent protein kinase
  Author: s. s. taylor, j. yang, j. wu
  Keywords: camp-dependent protein kinase, f327a/k285p mutant, isoform specific regulation, agc- specific insert, signaling protein, transferase
  
• 2r7o.pdb. transferase 09-sep-07 2r7o
  Title: crystal structure of vp1 apoenzyme of rotavirus sa11 (n- terminal hexahistidine-tagged)
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase
  
• 2r7q.pdb. transferase 09-sep-07 2r7q
  Title: crystal structure of vp1 apoenzyme of rotavirus sa11 (c- terminal hexahistidine-tagged)
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase
  
• 2r7r.pdb. transferase/rna 09-sep-07 2r7r
  Title: crystal structure of rotavirus sa11 vp1/rna (ugugacc) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7s.pdb. transferase/rna 10-sep-07 2r7s
  Title: crystal structure of rotavirus sa11 vp1 / rna (ugugcc) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7t.pdb. transferase/rna 10-sep-07 2r7t
  Title: crystal structure of rotavirus sa11 vp1/rna (ugugaacc) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7u.pdb. transferase/rna 10-sep-07 2r7u
  Title: crystal structure of rotavirus sa11 vp1/rna (aaaagcc) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7v.pdb. transferase/rna 10-sep-07 2r7v
  Title: crystal structure of rotavirus sa11 vp1/rna (ggcuuu) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7w.pdb. transferase/rna 10-sep-07 2r7w
  Title: crystal structure of rotavirus sa11 vp1/rna (ugugacc)/mrna 5'-cap (m7gpppg) complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r7x.pdb. transferase/rna 10-sep-07 2r7x
  Title: crystal structure of rotavirus sa11 vp1/rna (ugugacc)/gtp complex
  Author: x. lu, s. c. harrison, y. j. tao, j. t. patton, m. l. nibert
  Keywords: rna-dependent rna polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, rna-directed rna polymerase, transferase/rna complex
  
• 2r8n.pdb. hydrolase 11-sep-07 2r8n
  Title: structural analysis of the unbound form of hiv-1 subtype c protease
  Author: r. m. coman, a. h. robbins, r. mckenna, b. m. dunn
  Keywords: aspartyl protease, hydrolase, multifunctional enzyme, nucleotidyltransferase, protease, rna-directed dna polymerase, transferase
  
• 2rbf.pdb. oxidoreductase/dna 18-sep-07 2rbf
  Title: structure of the ribbon-helix-helix domain of escherichia coli puta (puta52) complexed with operator dna (o2)
  Author: j. j. tanner
  Keywords: oxidoreductase/dna complex
  
• 2rm5.pdb. oxidoreductase 03-oct-07 2rm5 He Hg (NMR, 20 structures)
  Title: glutathione peroxidase-type tryparedoxin peroxidase, oxidized form
  Author: j. melchers, k. feher, m. diechtierow, l. krauth-siegel, i. tews, c. muhle-goll
  Keywords: peroxidase, oxidized, oxidoreductase
  
• 2rm6.pdb. oxidoreductase 09-oct-07 2rm6 He Hg (NMR, 20 structures)
  Title: glutathione peroxidase-type tryparedoxin peroxidase, reduced form
  Author: j. melchers, k. feher, m. diechtierow, l. krauth-siegel, c. muhle- goll
  Keywords: peroxidase, reuced, oxidoreductase
  
• 2v44.pdb. cell adhesion 27-jun-07 2v44
  Title: crystal structure of ncam2 ig1-2
  Author: n. kulahin, k. k. rasmussen, o. kristensen, v. berezin, e. bock, p. walmod, m. gajhede
  Keywords: phosphorylation, immunoglobulin domain, neural cell adhesion molecule, ig, ncam2, membrane, homphilic, glycoprotein, transmembrane, immunoglobulin
  
• 2v5t.pdb. cell adhesion 10-jul-07 2v5t
  Title: crystal structure of ncam2 ig2-3
  Author: n. kulahin, k. rasmussen, o. christensen, v. berezin, e. bock, p. walmod, m. gajhede
  Keywords: immunoglobulin domain, membrane, glycoprotein, cell adhesion, transmembrane, neural cell adhesion molecule
  
• 2vau.pdb. oxidoreductase 04-sep-07 2vau Fe
  Title: isopenicillin n synthase with substrate analogue acomp ( unexposed)
  Author: w. ge, i. j. clifton, r. m. adlington, j. e. baldwin, p. j. rutledge
  Keywords: antibiotic biosynthesis, penicillin biosynthesis, iron, oxygenase, vitamin c, metal-binding, monocyclic intermediate, oxidoreductase, b-lactam antibiotic
  
• 2vbb.pdb. oxidoreductase 07-sep-07 2vbb Fe
  Title: isopenicillin n synthase with substrate analogue acomp ( 35minutes oxygen exposure)
  Author: w. ge, i. j. clifton, r. m. adlington, j. e. baldwin, p. j. rutledge
  Keywords: antibiotic biosynthesis, penicillin biosynthesis, iron, oxygenase, vitamin c, metal-binding, monocyclic intermediate, oxidoreductase, b-lactam antibiotic
  
• 2vim.pdb. oxidoreductase 05-dec-07 2vim
  Title: x-ray structure of fasciola hepatica thioredoxin
  Author: k. line, m. n. isupov, e. garcia-rodriguez, g. maggioli, f. parra, j. a. littlechild
  Keywords: trx, thioredoxin fold, oxidoreductase
  
• 2vj2.pdb. protein-binding 06-dec-07 2vj2
  Title: human jagged-1, domains dsl and egfs1-3
  Author: s. johnson, j. cordle, j. z. tay, p. roversi, p. a. handford, s. m. lea
  Keywords: polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, egf, dsl, notch, jagged, calcium, membrane, protein-binding, transmembrane, egf-like domain, disease mutatio...
  
• 2vj3.pdb. transcription 06-dec-07 2vj3 Cl Na Ca
  Title: human notch-1 egfs 11-13
  Author: s. johnson, j. cordle, j. z. tay, p. roversi, s. m. lea
  Keywords: polymorphism, glycoprotein, extracellular, egf, notch, jagged, nucleus, calcium, membrane
  
• 2vkv.pdb. transcription 02-jan-08 2vkv Mg
  Title: tetr (bd) variant l17g with reverse phenotype
  Author: m. resch, h. striegl, e. m. henssler, m. sevvana, c. egerer-sieber, e. schiltz, w. hillen, y. a. muller
  Keywords: plasmid, repressor, magnesium, dna-binding
  
• 2vnc.pdb. hydrolase 04-feb-08 2vnc
  Title: crystal structure of glycogen debranching enzyme trex from sulfolobus solfataricus
  Author: h. -n. song, s. -m. yoon, h. -j. cha, k. -h. park, e. -j. woo
  Keywords: glycosidase, glycosyl hydrolase, glycogen debranching
  
• 2vr0.pdb. oxidoreductase 24-mar-08 2vr0 Fe Ca
  Title: crystal structure of cytochrome c nitrite reductase nrfha complex bound to the hqno inhibitor
  Author: m. l. rodrigues, m. archer
  Keywords: oxidoreductase, hqno, nrfh, nrfha, membrane complex
  
• 2vr5.pdb. hydrolase 26-mar-08 2vr5
  Title: crystal structure of trex from sulfolobus solfataricus in complex with acarbose intermediate and glucose
  Author: h. -n. song, s. -m. yoon, s. -j. lee, h. -j. cha, k. -h. park, e. -j. woo
  Keywords: glycosidase, glycosyl hydrolase, glycogen debraching
  
• 2vsd.pdb. immune system receptor 22-apr-08 2vsd
  Title: crystal structure of chir-ab1
  Author: t. i. arnon, j. t. kaiser, p. j. bjorkman
  Keywords: fc receptor
  
• 2vso.pdb. hydrolase/translation 28-apr-08 2vso
  Title: crystal structure of a translation initiation complex
  Author: p. schutz, m. bumann, a. e. oberholzer, c. bieniossek, m. altmann, h. trachsel, u. baumann
  Keywords: rna-binding
  
• 2vsx.pdb. translation/hydrolase 30-apr-08 2vsx
  Title: crystal structure of a translation initiation complex
  Author: p. schutz, m. bumann, a. e. oberholzer, c. bieniossek, m. altmann, h. trachsel, u. baumann
  Keywords: rna-binding
  
• 2vt4.pdb. receptor 09-may-08 2vt4 Na
  Title: turkey beta1 adrenergic receptor with stabilising mutations and bound cyanopindolol
  Author: a. warne, m. j. serrano-vega, j. g. baker, r. moukhametzianov, p. c. edwards, r. henderson, a. g. w. leslie, c. g. tate, g. f. x. schertler
  Keywords: seven-helix receptor, lipoprotein, 7tm receptor, glycoprotein, transmembrane
  
• 2vue.pdb. transport protein 24-may-08 2vue
  Title: human serum albumin complexed with 4z,15e-bilirubin-ix- alpha
  Author: p. a. zunszain, j. ghuman, s. curry
  Keywords: glycoprotein
  
• 2vuf.pdb. transport protein 24-may-08 2vuf
  Title: human serum albumin complexed with fusidic acid
  Author: p. a. zunszain, j. ghuman, s. curry
  Keywords: cleavage on pair of basic residues
  
• 2vus.pdb. transcription 30-may-08 2vus Cl Zn
  Title: crystal structure of unliganded nmra-area zinc finger complex
  Author: m. kotaka, c. johnson, h. k. lamb, a. r. hawkins, j. ren, d. k. stammers
  Keywords: protein-protein interactions, metal-binding, nitrate assimilation, zinc-finger, dna-binding, zinc fingers, transcription, zinc, area, nmra, nucleus, activator, gata-type
  
• 2vut.pdb. transcription 30-may-08 2vut Cl Zn
  Title: crystal structure of nad-bound nmra-area zinc finger complex
  Author: m. kotaka, c. johnson, h. k. lamb, a. r. hawkins, j. ren, d. k. stammers
  Keywords: protein-protein interactions, metal-binding, nitrate assimilation, zinc-finger, dna-binding, zinc fingers, transcription, zinc, area, nmra, nucleus, activator, gata-type
  
• 2vuu.pdb. transcription 30-may-08 2vuu Zn
  Title: crystal structure of nadp-bound nmra-area zinc finger complex
  Author: m. kotaka, c. johnson, h. k. lamb, a. r. hawkins, j. ren, d. k. stammers
  Keywords: protein-protein interactions, metal-binding, nitrate assimilation, zinc-finger, dna-binding, zinc fingers, transcription, zinc, area, nmra, nucleus, activator, gata-type
  
• 2vuy.pdb. hydrolase 02-jun-08 2vuy
  Title: crystal structure of glycogen debranching exzyme trex from sulfolobus solfatarius
  Author: h. -n. song, s. -m. yoon, h. -j. cha, k. -h. park, e. -j. woo
  Keywords: glycosidase, glycosyl hydrolase, glycogen debranching
  
• 2vvp.pdb. isomerase 10-jun-08 2vvp
  Title: crystal structure of mycobacterium tuberculosis ribose-5- phosphate isomerase b in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate
  Author: e. kowalinski, a. k. roos, s. mariano, l. salmon, s. l. mowbray
  Keywords: rv2465c, isomerase, rare sugar, carbohydrate metabolism, pentose phosphate pathway
  
• 2vvq.pdb. isomerase 10-jun-08 2vvq
  Title: crystal structure of mycobacterium tuberculosis ribose-5- phosphate isomerase b in complex with the inhibitor 5- deoxy-5-phospho-d-ribonate
  Author: e. kowalinski, a. k. roos, s. mariano, l. salmon, s. l. mowbray
  Keywords: rpib, rv2465c, isomerase, carbohydrate metabolism
  
• 2vxw.pdb. cytokine 12-jul-08 2vxw
  Title: structural and functional studies of the potent anti-hiv chemokine variant p2-rantes
  Author: h. jin, p. li, p. j. liwang
  Keywords: glycoprotein, cell-cell fusion, inflammatory response, secreted, cytokine, hiv entry, chemokine, chemotaxis
  
• 2z5p.pdb. metal binding protein 16-jul-07 2z5p Cd Pd
  Title: apo-fr with low content of pd ions
  Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
  Keywords: light chain apoferritin, metal binding protein
  
• 2z5q.pdb. metal binding protein 16-jul-07 2z5q Cd Pd
  Title: apo-fr with intermediate content of pd ion
  Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
  Keywords: light chain apoferritin, metal binding protein
  
• 2z5r.pdb. metal binding protein 16-jul-07 2z5r Cd Pd
  Title: apo-fr with high content of pd ions
  Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
  Keywords: light chain apoferritin, metal binding protein
  
• 2z6c.pdb. transferase 29-jul-07 2z6c
  Title: crystal structure of lov1 domain of phototropin1 from arabidopsis thaliana
  Author: m. nakasako, d. matsuoka, s. tokutomi
  Keywords: serine/threonine-protein kinase, transferase
  
• 2z6d.pdb. transferase 29-jul-07 2z6d
  Title: crystal structure of lov1 domain of phototropin2 from arabidopsis thaliana
  Author: m. nakasako, d. matsuoka, s. tokutomi
  Keywords: serine/threonine-protein kinase, transferase
  
• 2z6f.pdb. heme binding protein 31-jul-07 2z6f Fe
  Title: crystal structure of neat domain from staphylococcus aureus in complex with heme
  Author: y. tanaka, a. suenaga, k. tsumoto
  Keywords: cell wall, peptidoglycan-anchor, secreted, heme binding protein
  
• 2z72.pdb. hydrolase 10-aug-07 2z72 Zn
  Title: new structure of cold-active protein tyrosine phosphatase at 1.1 angstrom
  Author: h. tsuruta, b. mikami, c. yamamoto, h. yamagata
  Keywords: psychrophile, protein tyrosine phosphatase, shewanella sp., hydrolase
  
• 2zbm.pdb. hydrolase 24-oct-07 2zbm Zn
  Title: crystal structure of i115m mutant cold-active protein tyrosine phosphatase
  Author: h. tsuruta, b. mikami, c. yamamoto, h. yamagata
  Keywords: protein-tyrosine-phosphatase, metallophosphoesterase, hydrolase
  
• 2zfg.pdb. membrane protein 04-jan-08 2zfg Mg
  Title: structure of ompf porin
  Author: w. a. cramer, s. d. zakharov, e. yamashita
  Keywords: ordered waters, ion transport, membrane, outer membrane, phage recognition, transmembrane, transport, membrane protein
  
• 2zhy.pdb. transferase 11-feb-08 2zhy
  Title: crystal structure of a pduo-type atp:cobalamin adenosyltransferase from burkholderia thailandensis
  Author: j. h. moon, a. k. park, e. h. jang, h. s. kim, y. m. chi
  Keywords: transferase
  
• 2zhz.pdb. transferase 12-feb-08 2zhz Mg
  Title: crystal structure of a pduo-type atp:cobalamin adenosyltransferase from burkholderia thailandensis
  Author: j. h. moon, a. k. park, e. h. jang, h. s. kim, y. m. chi
  Keywords: transferase
  
• 2zie.pdb. transferase 15-feb-08 2zie Se
  Title: crystal structure of ttha0409, putatative dna modification methylase from thermus thermophilus hb8- selenomethionine derivative
  Author: r. morita, h. ishikawa, n. nakagawa, r. masui, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 2zif.pdb. transferase 15-feb-08 2zif
  Title: crystal structure of ttha0409, putative dna modification methylase from thermus thermophilus hb8- complexed with s- adenosyl-l-methionine
  Author: r. morita, h. ishikawa, n. nakagawa, r. masui, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 2zig.pdb. transferase 15-feb-08 2zig
  Title: crystal structure of ttha0409, putative dna modification methylase from thermus thermophilus hb8
  Author: r. morita, h. ishikawa, n. nakagawa, r. masui, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 2zld.pdb. membrane protein 09-apr-08 2zld
  Title: structure of ompf co-crystallized with t83
  Author: w. a. cramer, s. d. zakharov, e. yamashita
  Keywords: colicin e3, ribosomal rnaase, disordered t83, tol system, ion transport, membrane, outer membrane, phage recognition, porin, transmembrane, transport, membrane protein
  
• 2zmk.pdb. sugar binding protein 19-apr-08 2zmk Mn Ca
  Title: crystl structure of basic winged bean lectin in complex with gal-alpha-1,4-gal-beta-ethylene
  Author: k. a. kulkarni, s. katiyar, a. surolia, m. vijayan
  Keywords: sugar binding protein, sugar specificity, glycoprotein, lectin
  
• 2zml.pdb. sugar binding protein 19-apr-08 2zml Mn Ca
  Title: crystal stucture of basic winged bean lectin in complex with gal-alpha 1,4 gal
  Author: k. a. kulkarni, s. katiyar, a. surolia, m. vijayan, k. suguna
  Keywords: sugar specificity, winged bean lectin, sugar binding protein
  
• 2zmn.pdb. sugar binding protein 19-apr-08 2zmn Mn Ca
  Title: crystal structure of basic winged bean lectin in complex with gal-alpha- 1,6 glc
  Author: k. a. kulkarni, s. katiyar, a. surolia, m. vijayan, k. suguna
  Keywords: sugar specificity, winged bean lectin, sugar binding protein
  
• 3ba0.pdb. hydrolase 07-nov-07 3ba0 Zn Ca
  Title: crystal structure of full-length human mmp-12
  Author: i. bertini, v. calderone, m. fragai, r. jaiswal, c. luchinat, m. melikian, e. myonas, d. i. svergun
  Keywords: hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix, glycoprotein, hydrolase, metal-binding, metalloprotease, polymorphism, protease, secreted, zinc, zymogen
  
• 3bg4.pdb. hydrolase/hydrolase inhibitor 26-nov-07 3bg4
  Title: the crystal structure of guamerin in complex with chymotrypsin and the development of an elastase-specific inhibitor
  Author: h. kim, t. t. t. chu, d. y. kim, d. r. kim, c. m. t. nguyen, j. choi, j. r. lee, m. j. hahn, k. k. kim
  Keywords: chymotrypsin, elastase, inhibitor, digestion, hydrolase, protease, secreted, serine protease, zymogen, protease inhibitor, serine protease inhibitor, hydrolase/hydrolase inhibitor complex
  
• 3bhg.pdb. lyase 28-nov-07 3bhg Se
  Title: crystal structure of adenylosuccinate lyase from legionella pneumophila
  Author: c. chang, h. li, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: legionella pneumophila, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
  
• 3bmv.pdb. transferase 13-dec-07 3bmv Ca
  Title: cyclodextrin glycosyl transferase from thermoanerobacterium thermosulfurigenes em1 mutant s77p
  Author: h. j. rozeboom, n. van oosterwijk, b. w. dijkstra
  Keywords: thermostable, family 13 glycosyl hydrolas, ligand, substrate, acarbose, calcium, glycosyltransferase, metal-binding, secreted, transferase
  
• 3bmw.pdb. transferase 13-dec-07 3bmw Cl Ca
  Title: cyclodextrin glycosyl transferase from thermoanerobacterium thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose inhibitor
  Author: h. j. rozeboom, n. van oosterwijk, b. w. dijkstra
  Keywords: thermostable, family 13 glycosyl hydrolas, ligand, substrate, acarbose, calcium, glycosyltransferase, metal-binding, secreted, transferase
  
• 3bsw.pdb. transferase 26-dec-07 3bsw
  Title: pgld-citrate complex, from campylobacter jejuni nctc 11168
  Author: n. b. olivier, b. imperiali
  Keywords: hexapeptide repeat, udp, acetyl coenzyme z, rossman fold, bacillosamine, campylobacter, pgl, n-linked glycosylation, transferase
  
• 3bsy.pdb. transferase 26-dec-07 3bsy
  Title: pgld from campylobacter jejuni, nctc 11168, in complex with acetyl coenzyme a
  Author: n. b. olivier, b. imperiali
  Keywords: hexapeptide repeat, udp, acetyl coenzyme a, rossman fold, bacillosamine, campylobacter jejuni, pgl, n-linked glycosylation, transferase
  
• 3c0e.pdb. chaperone 19-jan-08 3c0e
  Title: yeast hsp82 n-terminal domain: effects of mutants 98-99 ks- aa
  Author: r. m. immormino, d. t. gewirth
  Keywords: hsp82, hsp90, htpg, chaperone, ligand, geldanamycin, atp-binding, cytoplasm, nucleotide-binding, stress response
  
• 3c11.pdb. chaperone 21-jan-08 3c11
  Title: yeast hsp82 n-terminal domain-geldanamycin complex: effects of mutants 98-99 ks-aa
  Author: r. m. immormino, d. t. gewirth
  Keywords: hsp82, hsp90, htpg, chaperone, ligand, geldanamycin, atp-binding, cytoplasm, nucleotide-binding, stress response
  
• 3c2j.pdb. deoxyribonucleic acid 25-jan-08 3c2j
  Title: crystal structure analysis of trioxacarcin a covalently bound to d(aaccggtt)
  Author: r. pfoh, g. m. sheldrick
  Keywords: base flipping, b-dna
  
• 3c4q.pdb. transferase 30-jan-08 3c4q Mg
  Title: structure of the retaining glycosyltransferase msha : the first step in mycothiol biosynthesis. organism : corynebacterium glutamicum- complex with udp
  Author: m. w. vetting, p. a. frantom, j. s. blanchard
  Keywords: beta alpha beta, substrate assisted catalysis
  
• 3c4v.pdb. transferase 30-jan-08 3c4v Mg
  Title: structure of the retaining glycosyltransferase msha:the first step in mycothiol biosynthesis. organism: corynebacterium glutamicum : complex with udp and 1l-ins-1- p.
  Author: m. w. vetting, p. a. frantom, j. s. blanchard
  Keywords: beta alpha beta, substrate assisted catalysis
  
• 3c5g.pdb. transferase/dna, lyase/dna 31-jan-08 3c5g Mg Na
  Title: structure of a ternary complex of the r517k pol lambda mutant
  Author: m. garcia-diaz, k. bebenek, m. c. foley, l. c. pedersen, t. schlick, t. a. kunkel
  Keywords: transferase, transferase/dna, lyase/dna complex
  
• 3cav.pdb. oxidoreductase 20-feb-08 3cav
  Title: crystal structure of 5beta-reductase (akr1d1) in complex with nadp+ and 5beta-pregnan-3,20-dione
  Author: f faucher, l cantin, r breton
  Keywords: steroid metabolism
  
• 3cf6.pdb. signaling protein/gtp-binding protein 02-mar-08 3cf6
  Title: structure of epac2 in complex with cyclic-amp and rap
  Author: h. rehmann, e. arias-palomo, m. a. hadders, f. schwede, o. llorca, j. l. bos
  Keywords: signaling protein/gtp-binding protein complex
  
• 3ch4.pdb. transferase 07-mar-08 3ch4
  Title: the crystal structure of human phosphomavelonate kinase at 1.8 a resolution
  Author: d. -c. liang, q. chang, x. -x. yan, s. -y. gu
  Keywords: walker a motif, cholesterol biosynthesis, kinase, lipid synthesis, peroxisome, steroid biosynthesis, sterol biosynthesis, transferase
  
• 3ckj.pdb. unknown function 15-mar-08 3ckj
  Title: crystal structure of a mycobacterial protein
  Author: z. marland, j. rossjohn
  Keywords: unknown function
  
• 3ckn.pdb. unknown function 16-mar-08 3ckn Mn
  Title: crystal structure of a mycobacterial protein
  Author: z. marland, j. rossjohn
  Keywords: unknown function
  
• 3cko.pdb. unknown function 16-mar-08 3cko
  Title: crystal structure of a mycobacterial protein
  Author: z. marland, j. rossjohn
  Keywords: unknown function
  
• 3ckq.pdb. unknown function 16-mar-08 3ckq Mn
  Title: crystal structure of a mycobacterial protein
  Author: z. marland, j. rossjohn
  Keywords: unknown function
  
• 3ckv.pdb. unknown function 17-mar-08 3ckv
  Title: crystal structure of a mycobacterial protein
  Author: z. marland, j. rossjohn
  Keywords: unknown function
  
• 3clc.pdb. transcription regulator/dna 18-mar-08 3clc Mg
  Title: crystal structure of the restriction-modification controller protein c.esp1396i tetramer in complex with its natural 35 base-pair operator
  Author: j. e. mcgeehan, s. d. streeter, s. j. thresh, n. ball, r. b. g. ravelli, g. g. kneale
  Keywords: transcriptional regulator, helix-turn- helix, dna-bending, plasmid, transcription regulator/dna complex
  
• 3clj.pdb. rna binding protein 19-mar-08 3clj
  Title: structure of the rna polymerase ii ctd-interacting domain of nrd1
  Author: l. vasiljeva, m. kim, h. mutschler, s. buratowski, a. meinhart
  Keywords: nucleus, phosphoprotein, rna polymerase ii binding protein, rna binding protein
  
• 3cmr.pdb. hydrolase 24-mar-08 3cmr Mg Zn
  Title: e. coli alkaline phosphatase mutant r166s in complex with phosphate
  Author: p. j. o'brien, j. k. lassila, t. d. fenn, j. g. zalatan, d. herschlag
  Keywords: phosphoryl transfer, arginine, phosphate, hydrolase, magnesium, metal-binding, periplasm, phosphoprotein, zinc
  
• 3csq.pdb. hydrolase 10-apr-08 3csq Zn
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: infection, phi29, late protein
  
• 3csr.pdb. hydrolase 10-apr-08 3csr
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: hydrolase, cell wall, infection, late protein
  
• 3csz.pdb. hydrolase 10-apr-08 3csz
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: phi29, hydrolase, infection, structure, late protein
  
• 3ct0.pdb. hydrolase 11-apr-08 3ct0
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: phi29, hydrolase, infection, structure, late protein
  
• 3ct1.pdb. hydrolase 11-apr-08 3ct1
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: phi29, hydrolase, infection, structure, late protein
  
• 3ct5.pdb. hydrolase 11-apr-08 3ct5
  Title: crystal and cryoem structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
  Author: y. xiang, m. g. rossmann
  Keywords: phi29, hydrolase, infection, structure, late protein
  
• 3ctr.pdb. hydrolase 14-apr-08 3ctr
  Title: crystal structure of the rrm-domain of the poly(a)-specific ribonuclease parn bound to m7gtp
  Author: t. monecke, s. schell, a. dickmanns, r. ficner
  Keywords: rna-binding
  
• 3cv5.pdb. hydrolase 17-apr-08 3cv5 Zn
  Title: golgi mannosidase ii d204a catalytic nucleophile mutant complex with 3alpha,6alpha-mannopentaose
  Author: n. shah, d. a. kuntz, d. r. rose
  Keywords: glycosidase, golgi apparatus, membrane, metal-binding, signal-anchor, transmembrane, zinc
  
• 3cyw.pdb. hydrolase 27-apr-08 3cyw Cl
  Title: effect of flap mutations on structure of hiv-1 protease and inhibition by saquinavir and darunavir
  Author: f. liu, i. t. weber
  Keywords: viral nucleoprotein, virion, zinc, zinc-finger
  
• 3cyx.pdb. hydrolase 27-apr-08 3cyx Na
  Title: crystal structure of hiv-1 mutant i50v and inhibitor saquinavira
  Author: f. liu, i. t. weber
  Keywords: hydrolase
  
• 3czn.pdb. hydrolase 29-apr-08 3czn Zn
  Title: golgi alpha-mannosidase ii (d204a nucleophile mutant) in complex with gnman5gn
  Author: n. shah, d. r. rose
  Keywords: glycosyl hydrolase, mannosidase, n-terminal alpha-beta domain, three helix bundle, 2 c-terminal beta barrels, glycosidase, golgi apparatus, membrane, metal- binding, signal-anchor, transmembrane, zin...
  
• 3czs.pdb. hydrolase 29-apr-08 3czs Zn
  Title: golgi alpha-mannosidase ii (d204a nucleophile mutant)
  Author: n. shah, d. r. rose
  Keywords: glycosyl hydrolase, mannosidase, n-terminal alpha-beta domain, three helix bundle, 2 c-terminal beta barrels
  
• 3czv.pdb. lyase 30-apr-08 3czv Zn
  Title: crystal structure of the human carbonic anhydrase xiii in complex with acetazolamide
  Author: a. di fiore, g. de simone
  Keywords: protein-inhibitor complex, lyase, metal- binding, zinc
  
• 3d0n.pdb. metal binding protein 02-may-08 3d0n Zn
  Title: crystal structure of human carbonic anhydrase xiii
  Author: a. di fiore, g. de simone
  Keywords: lyase, metal-binding, zinc, metal binding protein
  
• 3d0v.pdb. immune system 02-may-08 3d0v
  Title: crystal structure of the hiv-1 cross neutralizing monoclonal antibody 2f5 in complex with gp41 peptide lleldkwaslw
  Author: s. bryson, r. c. hynes, a. cunningham, a. dong, j. -p. julien, e. f. pai
  Keywords: hiv, gp41, antibody, neutralizing, immune system
  
• 3d1e.pdb. transferase, transcription 05-may-08 3d1e
  Title: crystal structure of e. coli sliding clamp (beta) bound to a polymerase ii peptide
  Author: r. e. georgescu, o. yurieva, k. seung-sup, j. kuriyan, x-p. kong, m. o'donnell
  Keywords: dna polymerase, dna sliding clamp, dna replication, rational drug design, antibiotic target, transferase, transcription
  
• 3d1f.pdb. transferase, transcription 05-may-08 3d1f
  Title: crystal structure of e. coli sliding clamp (beta) bound to a polymerase iii peptide
  Author: r. e. georgescu, o. yurieva, k. seung-sup, j. kuriyan, x-p. kong, m. o'donnell
  Keywords: dna polymerase, dna sliding clamp, dna replication, rational drug design, antibiotic target, transferase, transcription
  
• 3d1g.pdb. transferase, transcription 05-may-08 3d1g Br
  Title: structure of a small molecule inhibitor bound to a dna sliding clamp
  Author: r. e. georgescu, o. yurieva, k. seung-sup, j. kuriyan, x-p. kong, m. o'donnell
  Keywords: dna polymerase, dna sliding clamp, dna replication, rational drug design, antibiotic target, transferase, transcription
  
• 3d1x.pdb. hydrolase 06-may-08 3d1x Cl
  Title: crystal structure of hiv-1 mutant i54m and inhibitor saquinavir
  Author: f. liu, i. t. weber
  Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger
  
• 3d1y.pdb. hydrolase 06-may-08 3d1y Cl Na
  Title: crystal structure of hiv-1 mutant i54v and inhibitor saquina
  Author: f. liu, i. t. weber
  Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger
  
• 3d1z.pdb. hydrolase 07-may-08 3d1z Cl
  Title: crystal structure of hiv-1 mutant i54m and inhibitor darunavir
  Author: f. liu, a. y. kovalesky, y. tie, a. k. ghosh, r. w. harrison, i. t. weber
  Keywords: flap mutant, i54m, darunavir, hydrolase
  
• 3d20.pdb. hydrolase 07-may-08 3d20 Cl Na
  Title: crystal structure of hiv-1 mutant i54v and inhibitor darunavia
  Author: f. liu, a. y. kovalesky, y. tie, a. k. ghosh, r. w. harrison, i. t. weber
  Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger
  
• 3d24.pdb. transcription 07-may-08 3d24
  Title: crystal structure of ligand-binding domain of estrogen- related receptor alpha (erralpha) in complex with the peroxisome proliferators-activated receptor coactivator- 1alpha box3 peptide (pgc-1alpha)
  Author: d. moras, h. greschik, r. flaig, y. sato, n. rochel, structural proteomics in europe (spine)
  Keywords: structural proteomics in europe, spine
  
• 3d7s.pdb. transferase 21-may-08 3d7s Zn
  Title: crystal structure of wild-type e. coli asparate transcarbamoylase at ph 8.5 at 2.80 a resolution
  Author: k. a. stieglitz, j. xia, e. r. kantrowitz
  Keywords: positively charged channel, apoenzyme, pyrimidine biosynthesis, transferase, metal-binding, zinc
  
• 3d94.pdb. transferase 26-may-08 3d94 Ca
  Title: crystal structure of the insulin-like growth factor-1 receptor kinase in complex with pqip
  Author: j. wu, w. li, w. t. miller, s. r. hubbard
  Keywords: receptor tyrosine kinase, pqip, inhibitor, atp- binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, transferase, transmembrane, tyrosine- protein kinase
  
• 3d9i.pdb. transcription 27-may-08 3d9i
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9j.pdb. transcription 27-may-08 3d9j
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9k.pdb. transcription 27-may-08 3d9k
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9l.pdb. transcription 27-may-08 3d9l
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9m.pdb. transcription 27-may-08 3d9m
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9n.pdb. transcription 27-may-08 3d9n
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9o.pdb. transcription 27-may-08 3d9o Se
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3d9p.pdb. transcription 27-may-08 3d9p
  Title: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
  Author: r. becker, b. loll, a. meinhart
  Keywords: rna polymerase ii ctd interacting domain, arm repeats, phospho-ctd, phosphoprotein, rna-binding, transcription
  
• 3da1.pdb. oxidoreductase 28-may-08 3da1 Se
  Title: x-ray structure of the glycerol-3-phosphate dehydrogenase from bacillus halodurans complexed with fad. northeast structural genomics consortium target bhr167.
  Author: a. p. kuzin, m. abashidze, j. seetharaman, d. wang, h. janjua, l. owens, r. xiao, r. nair, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, oxidoreductase
  
• 3da4.pdb. antibiotic 28-may-08 3da4
  Title: crystal structure of colicin m, a novel phosphatase specifically imported by escherichia coli
  Author: k. zeth, r. albrecht, v. braun
  Keywords: phosphatase, crystal structure, antibiotic, antimicrobial, bacteriocin, plasmid, tonb box
  
• 3da5.pdb. rna binding protein 28-may-08 3da5
  Title: crystal structure of piwi/argonaute/zwille(paz) domain from thermococcus thioreducens
  Author: r. c. hughes, j. d. ng
  Keywords: rna binding, sh3-like barrel, rna binding protein
  
• 3dao.pdb. hydrolase 29-may-08 3dao Se
  Title: crystal structure of a putative phosphatase (rer070207001050) from eubacterium rectale at 1.80 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: a putative phosphatse, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, haloacid dehalogenase-like hydrolase
  
• 3daw.pdb. structural protein/structural protein re30-may-08 3daw Ca
  Title: structure of the actin-depolymerizing factor homology domain in complex with actin
  Author: v. o. paavilainen, e. oksanen, a. goldman, p. lappalainen
  Keywords: actin binding proteins, cytoskeleton, structural protein/contractile protein complex, structural protein/structural protein regulator complex
  
• 3db0.pdb. oxidoreductase 30-may-08 3db0 Se
  Title: crystal structure of putative pyridoxamine 5'-phosphate oxidase (np_472219.1) from listeria innocua at 2.00 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative pyridoxamine 5'-phosphate oxidase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, oxidoreductase
  
• 3db9.pdb. structural genomics, unknown function 30-may-08 3db9
  Title: crystal structure of upf0317 protein atu3911 from agrobacterium tumefaciens. northeast strcutural genomics target atr186
  Author: j. seetharaman, m. abashidze, d. wang, h. janjua, l. owens, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: agrobacterium tumefaciens, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 3dby.pdb. structural genomics, unknown function 02-jun-08 3dby Fe
  Title: crystal structure of uncharacterized protein from bacillus cereus g9241 (csap target)
  Author: u. a. ramagopal, j. b. bonanno, s. ozyurt, j. freeman, s. wasserman, s. hu, c. groshong, l. rodgers, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
  
• 3dc1.pdb. transferase 03-jun-08 3dc1
  Title: crystal structure of kynurenine aminotransferase ii complex with alpha-ketoglutarate
  Author: q. han, t. cai, d. a. tagle, h. robinson, j. li
  Keywords: plp-dependent transferase, aminotransferase, multifunctional enzyme, pyridoxal phosphate, alternative splicing, mitochondrion, transferase, transit peptide
  
• 3dcd.pdb. structural genomics, unknown function 03-jun-08 3dcd Se
  Title: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from lactobacillus acidophilus at the resolution 1.9a. northeast structural genomics consortium target lar33.
  Author: a. p. kuzin, s. lew, s. m. vorobiev, j. seetharaman, h. wang, l. mao, e. l. foote, r. xiao, r. nair, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 3dcp.pdb. hydrolase 04-jun-08 3dcp Zn Fe Se
  Title: crystal structure of the putative histidinol phosphatase hisk from listeria monocytogenes. northeast structural genomics consortium target lmr141.
  Author: s. m. vorobiev, m. su, j. seetharaman, l. zhao, l. mao, e. l. foote, r. xiao, r. nair, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: hisk, histidine biosynthesis, nesg, lmr141, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, hydrolase
  
• 3dcx.pdb. structural genomics, unknown function 04-jun-08 3dcx Cl Se
  Title: crystal structure of a protein of unknown function (duf1696) with pleckstrin-homology domains (yp_001092950.1) from shewanella sp. pv-4 at 2.00 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: a protein of unknown function (duf1696) with pleckstrin-homology domains, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3dfa.pdb. transferase 11-jun-08 3dfa
  Title: crystal structure of kinase domain of calcium-dependent protein kinase cgd3_920 from cryptosporidium parvum
  Author: a. k. wernimont, j. lew, l. lin, a. hassanali, c. khuu, z. alam, i. kozieradzki, d. cossar, a. bochkarev, c. h. arrowsmith, c. bountra, m. wilkstrom, a. m. edwards, r. hui, j. d. artz, t. xiao, structural genomics consortium (sgc)
  Keywords: calmodulin, kinase, malaria, transferase, structural genomics, structural genomics consortium, sgc
  
• 3dff.pdb. hydrolase 11-jun-08 3dff Zn Se
  Title: the crystal structure of teicoplanin pseudoaglycone deacetylase orf2
  Author: y. zou, j. s. brunzelle, s. k. nair
  Keywords: lipoglycopeptide, pseudoaglycone, zinc dependent, hydrolase
  
• 3dfi.pdb. hydrolase 12-jun-08 3dfi Zn
  Title: the crystal structure of antimicrobial reagent a40926 pseudoaglycone deacetylase dbv21
  Author: y. zou, j. s. brunzelle, s. k. nair
  Keywords: hydrolase
  
• 3dfk.pdb. hydrolase 12-jun-08 3dfk Zn Se
  Title: the crystal structure of teicoplanin pseudoaglycone deacetylase orf2* bound to one of its products decanoic acid
  Author: y. zou, j. s. brunzelle, s. k. nair
  Keywords: alpha-beta single domain, hydrolase
  
• 3dfm.pdb. hydrolase 12-jun-08 3dfm Zn Se
  Title: the crystal structure of the zinc inhibited form of teicoplanin deacetylase orf2
  Author: y. zou, j. s. brunzelle, s. k. nair
  Keywords: alpha-beta single domain, hydrolase
  
• 3dfv.pdb. transcription/dna 12-jun-08 3dfv Zn
  Title: adjacent gata dna binding
  Author: d. l. bates, g. k. kim, l. guo, l. chen
  Keywords: activator, dna-binding, metal-binding, nucleus, transcription, transcription regulation, zinc, zinc-finger
  
• 3dfx.pdb. transcription/dna 12-jun-08 3dfx Zn
  Title: opposite gata dna binding
  Author: d. l. bates, g. k. kim, l. guo, l. chen
  Keywords: dna-binding, metal-binding, nucleus, transcription, transcription regulation, zinc, zinc-finger, transcription/dna complex
  
• 3dha.pdb. hydrolase 17-jun-08 3dha Zn
  Title: an ultral high resolution structure of n-acyl homoserine lactone hydrolase with the product n-hexanoyl-l-homoserine bound at an alternative site
  Author: d. liu, j. momb, p. w. thomas, a. moulin, g. a. petsko, w. fast, d. ringe
  Keywords: quorum quenching, n-acyl homoserine lactone, alternative binding site, product complex, ahl lactonase
  
• 3dhb.pdb. hydrolase 17-jun-08 3dhb Zn
  Title: 1.4 angstrom structure of n-acyl homoserine lactone hydrolase with the product n-hexanoyl-l-homoserine bound at the catalytic metal center
  Author: d. liu, j. momb, p. w. thomas, a. moulin, g. a. petsko, w. fast, d. ringe
  Keywords: qourum quenching, n-acyl homoserine lactone, product complex, ahl lactonase, general acid, catalytic mechanism
  
• 3dhc.pdb. hydrolase 17-jun-08 3dhc Zn
  Title: 1.3 angstrom structure of n-acyl homoserine lactone hydrolase with the product n-hexanoyl-l-homocysteine bound to the catalytic metal center
  Author: d. liu, j. momb, p. w. thomas, a. moulin, g. a. petsko, w. fast, d. ringe
  Keywords: qourum quenching, n-acyl homocysteine thiolactone, product complex, ahl lactonase, general acid, catalytic mechanism
  
• 3dip.pdb. lyase 20-jun-08 3dip
  Title: crystal structure of an enolase protein from the environmental genome shotgun sequencing of the sargasso sea
  Author: j. b. bonanno, j. freeman, k. t. bain, f. zhang, s. ozyurt, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: isomerase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, lyase
  
• 3dk3.pdb. transferase 24-jun-08 3dk3
  Title: crystal structure of mutant abl kinase domain in complex with small molecule fragment
  Author: h. a. lewis
  Keywords: nucleotide- binding, nucleus, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
  
• 3dk6.pdb. transferase 24-jun-08 3dk6
  Title: crystal structure of mutant abl kinase domain in complex with small molecule fragment
  Author: h. a. lewis
  Keywords: nucleotide- binding, nucleus, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
  
• 3dk7.pdb. transferase 24-jun-08 3dk7
  Title: crystal structure of mutant abl kinase domain in complex with small molecule fragment
  Author: h. a. lewis
  Keywords: nucleotide- binding, nucleus, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
  
• 3dmf.pdb. transferase 01-jul-08 3dmf
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adomet
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, g1207 methyltransferase, s-adenosyl-l-methionine, translation, transferase
  
• 3dmg.pdb. transferase 01-jul-08 3dmg
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adohcy
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, n2 g1207 methyltransferase, s-adenosyl-l-homocysteine, translation, methyltransferase, transferase
  
• 3dmh.pdb. transferase 01-jul-08 3dmh
  Title: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex with adomet and guanosine
  Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
  Keywords: 16s rrna methyltransferase, n2 g1207 methyltransferase, s-adenosyl-l-homocysteine, translation, methyltransferase, transferase
  
• 3dnp.pdb. structural genomics, unknown function 02-jul-08 3dnp Mg Se
  Title: crystal structure of stress response protein yhax from bacillus subtilis
  Author: c. chang, c. tesar, r. jedrzejczak, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: bacillus subtilis, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, stress response, unknown function
  
• 3doc.pdb. oxidoreductase 03-jul-08 3doc
  Title: crystal structure of trka glyceraldehyde-3-phosphate dehydrogenase from brucella melitensis
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: brucella, structural genomics, psi, protein structure initiative, seattle structural genomics center for infectious disease, oxidoreductase
  
• 3dp7.pdb. transferase 07-jul-08 3dp7
  Title: crystal structure of sam-dependent methyltransferase from bacteroides vulgatus atcc 8482
  Author: v. n. malashkevich, r. toro, u. ramagopal, a. j. meyer, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3dpi.pdb. ligase 08-jul-08 3dpi
  Title: crystal structure of nad+ synthetase from burkholderia pseudomallei
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: decode, structural genomics, psi, protein structure initiative, seattle structural genomics center for infectious disease, ligase
  
• 3dro.pdb. immune system 11-jul-08 3dro
  Title: crystal structure of the hiv-1 cross neutralizing antibody 2f5 in complex with gp41 peptide elleldkwaslwn grown in ammonium sulfate
  Author: j. -p. julien, s. bryson, e. f. pai
  Keywords: gp41, 2f5, nmab, immune system
  
• 3dt5.pdb. structural genomics, unknown function 14-jul-08 3dt5 Ca Se
  Title: c_terminal domain of protein of unknown function af_0924 from archaeoglobus fulgidus.
  Author: j. osipiuk, e. evdokimova, m. kudritska, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: apc7732, unknown function, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, membrane, transmembrane
  
• 3dw0.pdb. hydrolase 21-jul-08 3dw0
  Title: crystal structure of the class a carbapenemase kpc-2 at 1.6 angstrom resolution
  Author: s. petrella, n. ziental-gelus, c. mayer, v. jarlier, w. sougakoff
  Keywords: kpc-2, carbapenemase, antibiotic resistance, hydrolase