Recent PDB releases or updates: week of 6 July 2007
- 1vso.pdb.
membrane protein 29-mar-07 1vso
Title: crystal structure of the ligand-binding core of iglur5 in complex with the antagonist (s)-atpo at 1.85 a resolution
Author: h. hald, p. naur, m. gajhede, j. s. kastrup
- 1w5d.pdb.
hydrolase 06-aug-04 1w5d
Ca
Title: crystal structure of pbp4a from bacillus subtilis
Author: e. sauvage, r. herman, s. petrella, c. duez, j. m. frere, p. charlier
Keywords: d-ala-d-ala-carboxypeptidase, peptidoglycan, bacillus subtilis, beta-lactam, hydrolase, peptidoglycan synthesis
- 2apg.pdb.
biosynthetic protein 16-aug-05 2apg
Cl
Title: the structure of tryptophan 7-halogenase (prna)suggests a mechanism for regioselective chlorination
Author: c. dong, s. flecks, s. unversucht, c. haupt, k. h. van pee, j. h. naismith, scottish structural proteomics facility (sspf)
Keywords: flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics, scottish structural proteomics facility, sspf
- 2ar8.pdb.
biosynthetic protein 19-aug-05 2ar8
Cl
Title: the structure of tryptophan 7-halogenase (prna)suggests a mechanism for regioselective chlorination
Author: c. dong, s. flecks, s. unversucht, c. haupt, k. h. van pee, j. h. naismith, scottish structural proteomics facility (sspf)
Keywords: flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics, scottish structural proteomics facility, sspf
- 2ard.pdb.
biosynthetic protein 19-aug-05 2ard
Title: the structure of tryptophan 7-halogenase (prna) suggests a mechanism for regioselective chlorination
Author: c. dong, s. flecks, s. unversucht, c. haupt, k. h. van pee, j. h. naismith, scottish structural proteomics facility (sspf)
Keywords: flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics, scottish structural proteomics facility, sspf
- 2b4o.pdb.
hydrolase 26-sep-05 2b4o
Cl
Title: structure of the r258k mutant of selenomonas ruminantium ptp-like phytase
Author: r. j. gruninger, l. b. selinger, s. c. mosimann
Keywords: ionic strength
- 2b4p.pdb.
hydrolase 26-sep-05 2b4p
Cl
Title: structure of the d223n mutant of selenomonas ruminantium ptp-like phytase
Author: r. j. gruninger, l. b. selinger, s. c. mosimann
Keywords: ionic strength
- 2b4u.pdb.
hydrolase 26-sep-05 2b4u
Cl Se
Title: structure of the c252s mutant of selenomonas ruminantium ptp-like phytase
Author: r. j. gruninger, l. b. selinger, s. c. mosimann
Keywords: ionic strength
- 2cgg.pdb.
hydrolase 02-mar-06 2cgg
Title: crystal structure of acylated sars coronavirus main proteinase
Author: k. pumpor, k. h. g. verschueren, r. hilgenfeld
Keywords: main proteinase, hydrolase, polyprotein, protease, ribosomal frameshift, thiol protease
- 2ci0.pdb.
oxidoreductase 16-mar-06 2ci0
Fe
Title: high throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for cyp51 inhibitors
Author: l. m. podust, y. kim, l. v. yermalitskaya, j. p. von kries, m. r. waterman
Keywords: heme lipid synthesis, metal-binding, monooxygenase, nadp, oxidoreductase, protein-inhibitor complex, steroid biosynthesis, sterol biosynthesis
- 2cib.pdb.
oxidoreductase 17-mar-06 2cib
Fe
Title: high throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for cyp51 inhibitors
Author: l. m. podust, y. kim, l. v. yermalitskaya, j. p. von kries, m. r. waterman
Keywords: heme lipid synthesis, metal-binding, monooxygenase, nadp, oxidoreductase, protein-inhibitor complex, steroid biosynthesis, sterol biosynthesis
- 2cle.pdb.
lyase 27-apr-06 2cle
F Na
Title: tryptophan synthase in complex with n-(4'- trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (f6) - lowf6 complex
Author: h. ngo, r. harris, n. kimmich, p. casino, d. niks, l. blumenstein, t. r. barends, v. kulik, m. weyand, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, crbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2clf.pdb.
lyase 27-apr-06 2clf
F Na
Title: tryptophan synthase in complex with n-(4'- trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (f6) - highf6 complex
Author: h. ngo, r. harris, n. kimmich, p. casino, d. niks, l. blumenstein, t. r. barends, v. kulik, m. weyand, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, crbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2clh.pdb.
lyase 27-apr-06 2clh
Na
Title: tryptophan synthase in complex with (naphthalene-2'- sulfonyl)-2-amino-1-ethylphosphate (f19)
Author: h. ngo, r. harris, n. kimmich, p. casino, d. niks, l. blumenstein, t. r. barends, v. kulik, m. weyand, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, crbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2cli.pdb.
lyase 27-apr-06 2cli
F Na
Title: tryptophan synthase in complex with n-(4'- trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (f9)
Author: h. ngo, r. harris, n. kimmich, p. casino, d. niks, l. blumenstein, t. r. barends, v. kulik, m. weyand, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, carbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2clk.pdb.
lyase 27-apr-06 2clk
Na
Title: tryptophan synthase in complex with d-glyceraldehyde 3- phosphate (g3p)
Author: h. ngo, r. harris, n. kimmich, p. casino, d. niks, l. blumenstein, t. r. barends, v. kulik, m. weyand, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, crbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2cll.pdb.
lyase 28-apr-06 2cll
F Na
Title: tryptophan synthase (external aldimine state) in complex with n-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1- ethylphosphate (f9)
Author: h. ngo, n. kimmich, r. harris, d. niks, l. blumenstein, v. kulik, t. r. barends, i. schlichting, m. f. dunn
Keywords: carbon-oxygen lyase, amino-acid biosynthesis, tryptophan biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2clm.pdb.
lyase 28-apr-06 2clm
F Na
Title: tryptophan synthase (external aldimine state) in complex with n-(4'-trifluoromethoxybenzoyl)-2-amino-1- ethylphosphate (f6f)
Author: h. ngo, n. kimmich, r. harris, d. niks, l. blumenstein, v. kulik, t. r. barends, i. schlichting, m. f. dunn
Keywords: carbon-oxygen lyase, amino-acid biosynthesis, tryptophan biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2clo.pdb.
lyase 28-apr-06 2clo
Na
Title: tryptophan synthase (external aldimine state) in complex with (naphthalene-2'-sulfonyl)-2-amino-1-ethylphosphate (f19)
Author: h. ngo, n. kimmich, r. harris, d. niks, l. blumenstein, v. kulik, t. r. barends, i. schlichting, m. f. dunn
Keywords: carbon-oxygen lyase, amino-acid biosynthesis, tryptophan biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate
- 2dwf.pdb.
surface active protein 11-aug-06 2dwf
(NMR, 15 structures)
Title: nmr structure of mini-b, an n-terminal- c-terminal construct from human surfactant protein b (sp-b), in sodium dodecyl sulfate (sds) micelles
Author: v. booth, m. sarker, a. j. waring, k. m. w. keough
Keywords: sp-b, surfactant protein b, lipid associated protein
- 2dwo.pdb.
transferase, hydrolase 16-aug-06 2dwo
Title: pfkfb3 in complex with adp and pep
Author: y. h. lee
- 2dwp.pdb.
transferase, hydrolase 16-aug-06 2dwp
Mg
Title: a pseudo substrate complex of 6-phosphofructo-2-kinase of pfkfb
Author: y. h. lee
Keywords: amppcp, fructose-6-phosphate
- 2dwx.pdb.
protein transport 21-aug-06 2dwx
Title: co-crystal structure analysis of gga1-gae with the wnsf motif
Author: m. inoue, t. shiba, y. yamada, k. ihara, m. kawasaki, r. kato, k. nakayama, s. wakatsuki
Keywords: adaptin
- 2dwy.pdb.
protein transport 21-aug-06 2dwy
Title: crystal structure analysis of gga1-gae
Author: m. inoue, t. shiba, y. yamada, k. ihara, m. kawasaki, r. kato, k. nakayama, s. wakatsuki
Keywords: adaptin
- 2dym.pdb.
protein turnover/protein turnover 15-sep-06 2dym
Title: the crystal structure of saccharomyces cerevisiae atg5- atg16(1-46) complex
Author: m. matsushita, n. n. suzuki, f. inagaki
Keywords: herix-bundle
- 2dyo.pdb.
protein turnover/protein turnover 15-sep-06 2dyo
Title: the crystal structure of saccharomyces cerevisiae atg5- atg16(1-57) complex
Author: m. matsushita, n. n. suzuki, f. inagaki
Keywords: herix-bundle
- 2e6i.pdb.
transferase 27-dec-06 2e6i
Zn
(NMR, 20 structures)
Title: solution structure of the btk motif of tyrosine-protein kinase itk from human
Author: h. li, n. tochio, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: tyrosine-protein kinase itk/tsk, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6j.pdb.
structural genomics, unknown function 27-dec-06 2e6j
(NMR, 20 structures)
Title: solution structure of the c-terminal papd-like domain from human hydin protein
Author: h. li, m. sato, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: hydin, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6n.pdb.
transcription 27-dec-06 2e6n
(NMR, 20 structures)
Title: solution structure of the tudor domain of staphylococcal nuclease domain-containing protein 1
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6o.pdb.
transcription, cell cycle 28-dec-06 2e6o
(NMR, 20 structures)
Title: solution structure of the hmg box domain from human hmg-box transcription factor 1
Author: x. r. qin, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6p.pdb.
structural protein 28-dec-06 2e6p
(NMR, 20 structures)
Title: solution structure of the ig-like domain (714-804) from human obscurin-like protein 1
Author: x. r. qin, t. suetake, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: obscurin-like protein 1, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6q.pdb.
structural protein 28-dec-06 2e6q
(NMR, 20 structures)
Title: solution structure of the ig-like domain (615-713) from human obscurin-like protein 1
Author: x. r. qin, t. suetake, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6r.pdb.
dna binding protein 28-dec-06 2e6r
Zn
(NMR, 20 structures)
Title: solution structure of the phd domain in smcy protein
Author: s. kadirvel, f. he, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: phd domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e6s.pdb.
cell cycle 28-dec-06 2e6s
Zn
(NMR, 20 structures)
Title: solution structure of the phd domain in ring finger protein 107
Author: s. kadirvel, f. he, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: phd domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2eb8.pdb.
oxygen storage/transport 07-feb-07 2eb8
Cu
Title: crystal structure of cu(ii)(sal-phe)/apo-myoglobin
Author: s. abe, s. okazaki, t. ueno, t. hikage, a. suzuki, t. yamane, y. watanabe
- 2eb9.pdb.
oxygen storage/transport 07-feb-07 2eb9
Cu
Title: crystal structure of cu(ii)(sal-leu)/apo-myoglobin
Author: s. abe, s. okazaki, t. ueno, t. hikage, a. suzuki, t. yamane, y. watanabe
- 2eg6.pdb.
hydrolase 28-feb-07 2eg6
Zn
Title: the crystal structure of the ligand-free dihydroorotase from e. coli
Author: m. lee, m. j. maher, j. m. guss
Keywords: tim barrel
- 2eg7.pdb.
hydrolase 28-feb-07 2eg7
Zn
Title: the crystal structure of e. coli dihydroorotase complexed with hddp
Author: m. lee, m. j. maher, j. m. guss
Keywords: tim barrel
- 2eg8.pdb.
hydrolase 28-feb-07 2eg8
F Zn
Title: the crystal structure of e. coli dihydroorotase complexed with 5-fluoroorotic acid
Author: m. lee, m. j. maher, j. m. guss
Keywords: tim barrel
- 2ewh.pdb.
carboxysome 03-nov-05 2ewh
Title: carboxysome protein csos1a from halothiobacillus neapolitanus
Author: y. tsai, m. r. sawaya, c. a. kerfeld, t. o. yeates
- 2g13.pdb.
carboxysome 13-feb-06 2g13
Title: csos1a with sulfate ion
Author: y. tsai, m. r. sawaya, g. c. cannon, e. b. williams, c. a. kerfeld, t. o. yeates
- 2giq.pdb.
transferase 29-mar-06 2giq
F
Title: hepatitis c virus rna-dependent rna polymerase ns5b with nni-2 inhibitor
Author: s. f. harris
Keywords: hepatitis, ns5b, transferase, rna-dependent rna polymerase
- 2gir.pdb.
transferase 29-mar-06 2gir
Title: hepatitis c virus rna-dependent rna polymerase ns5b with nni-1 inhibitor
Author: s. f. harris
Keywords: hepatitis, ns5b, transferase rna-dependent rna polymerase
- 2gzf.pdb.
antibiotic/antibiotic inhibitor 11-may-06 2gzf
Zn
Title: crystal structure of the e9 dnase domain with a mutant immunity protein im9 (y54f)
Author: p. s. santi, o. o. kolade, u. c. kuhlmann, c. kleanthous, a. m. hemmings
Keywords: 4-helix bundle, dnase domain, hnh- motif
- 2h0p.pdb.
viral protein 15-may-06 2h0p
(NMR, 15 structures)
Title: nmr structure of the dengue-4 virus envelope protein domain iii
Author: d. e. volk, y. lee, x. li, v. thiviyanathan, a. d. t. barrett, d. g. gorenstein
Keywords: ig-fold
- 2h9y.pdb.
hydrolase 12-jun-06 2h9y
F
Title: crystal structure of mouse acetylcholinesterase complexed with m-(n,n,n-trimethylammonio)trifluoroacetophenone
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, homodimer, glycosylated protein
- 2ha0.pdb.
hydrolase 12-jun-06 2ha0
I
Title: crystal structure of mouse acetylcholinesterase complexed with 4-ketoamyltrimethylammonium
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, homodimer, glycosylated protein
- 2ha2.pdb.
hydrolase 12-jun-06 2ha2
Title: crystal structure of mouse acetylcholinesterase complexed with succinylcholine
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, homodimer, glycosylated protein
- 2ha3.pdb.
hydrolase 12-jun-06 2ha3
Title: crystal structure of mouse acetylcholinesterase complexed with choline
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, homodimer, glycosylated protein
- 2ha4.pdb.
hydrolase 12-jun-06 2ha4
Title: crystal structure of mutant s203a of mouse acetylcholinesterase complexed with acetylcholine
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, mutant, homodimer, glycosylated protein
- 2ha5.pdb.
hydrolase 12-jun-06 2ha5
Title: crystal structure of mutant s203a of acetylcholinesterase complexed with acetylthiocholine
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, mutant, homodimer, glycosylated protein
- 2ha6.pdb.
hydrolase 12-jun-06 2ha6
Title: crystal structure of mutant s203a of mouse acetylcholinesterase complexed with succinylcholine
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, mutant, homodimer, glycosylated protein
- 2ha7.pdb.
hydrolase 12-jun-06 2ha7
I
Title: crystal structure of mutant s203a of mouse acetylcholinesterase complexed with butyrylthiocholine
Author: y. bourne, z. radic, g. sulzenbacher, e. kim, p. taylor, p. marchot
Keywords: serine esterase, acetylcholinesterase, mutant, homodimer, glycosylated protein
- 2hes.pdb.
biosynthetic protein 22-jun-06 2hes
Ca
Title: cytosolic iron-sulphur assembly protein- 1
Author: v. srinivasan, h. michel, r. lill, j. a. n. daili, a. j. pierik
Keywords: wd40 repeat
- 2hjm.pdb.
structural genomics, unknown function 30-jun-06 2hjm
Se
Title: crystal structure of a singleton protein pf1176 from p. furiosus
Author: l. q. chen, z. -j. liu, j. p. rose, b. -c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: structural genomics, secsg, psi, protein structure initiative, southeast collaboratory for structural genomics
- 2hjw.pdb.
ligase 02-jul-06 2hjw
Title: crystal structure of the bc domain of acc2
Author: y. s. cho, j. i. lee, d. shin, h. t. kim, t. g. lee, y. s. heo
- 2hp5.pdb.
hydrolase 17-jul-06 2hp5
Co
Title: crystal structure of the oxa-10 w154g mutant at ph 7.0
Author: f. kerff, c. falzone, r. herman, e. sauvage, p. charlier
Keywords: lysine carboxylation
- 2hp6.pdb.
hydrolase 17-jul-06 2hp6
Title: crystal structure of the oxa-10 w154a mutant at ph 7.5
Author: f. kerff, c. falzone, r. herman, e. sauvage, p. charlier
Keywords: lysine carboxylation
- 2hp9.pdb.
hydrolase 17-jul-06 2hp9
Title: crystal structure of the oxa-10 w154a mutant at ph 6.0
Author: f. kerff, c. falzone, r. herman, e. sauvage, p. charlier
Keywords: lysine carboxylation
- 2hpb.pdb.
hydrolase 17-jul-06 2hpb
Title: crystal structure of the oxa-10 w154a mutant at ph 9.0
Author: f. kerff, c. falzone, r. herman, e. sauvage, p. charlier
Keywords: lysine carboxylation
- 2hpk.pdb.
luminescent protein 17-jul-06 2hpk
Mg Se
Title: crystal structure of photoprotein berovin from beroe abyssicola
Author: z. j. liu, g. stepanyuk, e. s. vysotski, j. lee, j. p. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: berovin, structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
- 2hqe.pdb.
transcription 18-jul-06 2hqe
Title: crystal structure of human p100 tudor domain: large fragment
Author: n. shah, m. zhao, c. cheng, h. xu, j. yang, o. silvennoinen, z. j. liu, b. c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: large fragment, human, structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
- 2hrc.pdb.
lyase 20-jul-06 2hrc
Cl Fe
Title: 1.7 angstrom structure of human ferrochelatase variant r115l
Author: a. medlock, l. swartz, t. a. dailey, h. a. dailey, w. n. lanzilotta
Keywords: ferrochelatase, protoporphyrin ix, x-ray crystallography
- 2hre.pdb.
lyase 20-jul-06 2hre
Fe
Title: structure of human ferrochelatase variant e343k with protoporphyrin ix bound
Author: a. medlock, l. swartz, t. a. dailey, h. a. dailey, w. n. lanzilotta
Keywords: ferrochelatase, protoporphyrin ix
- 2hu9.pdb.
metal transport 26-jul-06 2hu9
Zn Fe
Title: x-ray structure of the archaeoglobus fulgidus copz n- terminal domain
Author: m. h. sazinsky, b. lemoine, j. m. arguello, a. c. rosenzweig
Keywords: iron-sufur protein, copz, atx1, atox1
- 2hyb.pdb.
transferase 04-aug-06 2hyb
Title: crystal structure of hexameric dsrefh
Author: d. h. shin, h. connie, a. schulte, c. dahl, r. kim, s. h. kim, berkeley structural genomics center (bsgc)
Keywords: dsrf, dsrh, crystal structure, sulfur, structural genomics, psi, protein structure initiative, berkeley structural genomics center, bsgc
- 2i1v.pdb.
transferase, hydrolase 15-aug-06 2i1v
Title: crystal structure of pfkfb3 in complex with adp and fructose-2,6-bisphosphate
Author: s. g. kim, m. r. el-maghrabi, y. h. lee
Keywords: adp and f-2,6-p2 in 2-kase, e-p and f-6-p in 2-pase
- 2i5r.pdb.
structural genomics, unknown function 25-aug-06 2i5r
Mg
Title: structure of small toprim domain-containing protein from b. stearothermophilus in complex with mg2+
Author: p. rezacova, d. borek, z. otwinowski, a. joachimiak, s. f. moy, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2ihm.pdb.
transferase/dna 26-sep-06 2ihm
Mg Na
Title: polymerase mu in ternary complex with gapped 11mer dna duplex and bound incoming nucleotide
Author: a. f. moon, l. c pedersen, t. a. kunkel
Keywords: helix-turn-helix
- 2iv0.pdb.
oxidoreductase 08-jun-06 2iv0
Cl Zn
Title: thermal stability of isocitrate dehydrogenase from archaeoglobus fulgidus studied by crystal structure analysis and engineering of chimers
Author: r. stokke, m. karlstrom, n. yang, i. leiros, r. ladenstein, n. k. birkeland, i. h. steen
Keywords: tricarboxylic acid cycle, isocitrate dehydrogenase, domain swapping, phosphorylation, aromatic cluster, nadp, ionic networks, oxidoreductase, thermal stability, glyoxylate bypass
- 2ixu.pdb.
hydrolase 11-jul-06 2ixu
Title: crystal structure of the modular cpl-1 endolysin complexed with a peptidoglycan analogue (wild-type endolysin)
Author: i. perez-dorado, j. a. hermoso
Keywords: muein hydrolase, bacteriolytic enzyme, pneumococcal cell wall degradation, lysozyme, hydrolase, glycosidase, multimodular
- 2ixv.pdb.
hydrolase 11-jul-06 2ixv
Title: crystal structure of the modular cpl-1 endolysin complexed with a peptidoglycan analogue (e94q mutant)
Author: i. perez-dorado, j. a. hermoso
Keywords: muein hydrolase, bacteriolytic enzyme, pneumococcal cell wall degradation, lysozyme, hydrolase, glycosidase, multimodular
- 2izm.pdb.
virus/rna 25-jul-06 2izm
Title: ms2-rna hairpin (c-10) complex
Author: c. helgstrand, e. grahn, t. moss, n. j. stonehouse, k. tars, p. g. stockley, l. liljas
Keywords: complex (capsid protein-rna hairpin), virion protein, capsid protein, structural protein, capsid, hairpin, levivirus, rna-binding
- 2j0k.pdb.
transferase 03-aug-06 2j0k
Title: crystal structure of a fragment of focal adhesion kinase containing the ferm and kinase domains.
Author: d. lietha, x. cai, y. li, m. d. schaller, m. j. eck
Keywords: cell migration, phosphorylation, ferm, kinase, transferase, atp-binding, integrin signaling, nucleotide-binding, tyrosine-protein kinase
- 2j0m.pdb.
transferase 03-aug-06 2j0m
Title: crystal structure a two-chain complex between the ferm and kinase domains of focal adhesion kinase.
Author: d. lietha, x. cai, y. li, m. d. schaller, m. j. eck
Keywords: cell migration, phosphorylation, ferm, kinase, transferase, atp-binding, integrin signaling, nucleotide-binding, tyrosine-protein kinase
- 2j3n.pdb.
oxidoreductase 22-aug-06 2j3n
Title: x-ray structure of human thioredoxin reductase 1
Author: k. fritz-wolf, s. urig, k. becker
Keywords: redox-active center
- 2j8c.pdb.
electron transport 24-oct-06 2j8c
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 8 in the neutral state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2j8d.pdb.
electron transport 24-oct-06 2j8d
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 8 in the charge- separated state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2j8f.pdb.
hydrolase 25-oct-06 2j8f
Title: crystal structure of the modular cpl-1 endolysin complexed with a peptidoglycan analogue (e94q mutant in complex with a disaccharide-pentapeptide)
Author: i. perez-dorado, j. a. hermoso
Keywords: muein hydrolase, bacteriolytic enzyme, pneumococcal cell wall degradation, lysozyme, hydrolase, glycosidase, multimodular
- 2j8g.pdb.
hydrolase 25-oct-06 2j8g
Title: crystal structure of the modular cpl-1 endolysin complexed with a peptidoglycan analogue (e94q mutant in complex with a tetrasaccharide-pentapeptide)
Author: i. perez-dorado, j. a. hermoso
Keywords: muein hydrolase, bacteriolytic enzyme, pneumococcal cell wall degradation, lysozyme, hydrolase, glycosidase, multimodular
- 2j9p.pdb.
hydrolase 15-nov-06 2j9p
Title: crystal structure of the bacillus subtilis pbp4a, and its complex with a peptidoglycan mimetic peptide.
Author: e. sauvage, r. herman, f. kerff, c. duez, p. charlier
Keywords: peptidoglycan synthesis, penicillin-binding protein, peptidoglycan, cell division, bacillus subtilis, cell wall, hydrolase, cell shape, cell cycle
- 2j9x.pdb.
lyase 16-nov-06 2j9x
Cs
Title: tryptophan synthase in complex with gp, alpha-d,l-glycerol- phosphate, cs, ph6.5 - alpha aminoacrylate form - (gp)e(a- a)
Author: h. ngo, n. kimmich, r. harris, d. niks, l. blumenstein, v. kulik, t. r. barends, i. schlichting, m. f. dunn
Keywords: tryptophan biosynthesis, crbon- oxygen lyase, amino-acid biosynthesis, lyase, allosteric enzyme, pyridoxal phosphate, synthase
- 2jbu.pdb.
hydrolase 11-dec-06 2jbu
Title: crystal structure of human insulin degrading enzyme complexed with co-purified peptides.
Author: h. im, y. shen, w. -j. tang
Keywords: metalloprotease, zinc, protease, hydrolase, enzyme assay, insulin degrading enzyme
- 2jc3.pdb.
transferase 19-dec-06 2jc3
Title: structure of o-acetylserine sulfhydrylase b from salmonella typhimurium
Author: a. chattopadhyay, w. m. rabeh, f. speroni, m. meier, s. ivaninskii, a. mozzarelli, p. burkhard, p. f. cook
Keywords: sulfhydrylase, pyridoxal phosphate, vitamin b6 dependent enzyme, cysteine biosynthesis, amino-acid biosynthesis
- 2je0.pdb.
nuclear protein 12-jan-07 2je0
Title: crystal structure of pp32
Author: t. huyton, c. wolberger
Keywords: nuclear protein, leucine-rich repeat, lrr, lanp, phapi, anp32a, mapmodulin
- 2je1.pdb.
nuclear protein 12-jan-07 2je1
Title: the crystal structure of the tumor supressor protein pp32 ( anp32a):structural insights into the anp32 family of proteins
Author: t. huyton, c. wolberger
Keywords: leucine-rich repeat, lrr, lanp, phapi, anp32, phosphorylation
- 2je2.pdb.
metal binding protein 13-jan-07 2je2
Fe
Title: cytochrome p460 from nitrosomonas europaea - probable nonphysiological oxidized form
Author: a. r. pearson, b. o. elmore, c. yang, j. d. ferrara, a. b. hooper, c. m. wilmot
Keywords: cytochrome p460, cross-linked heme, metal binding protein
- 2je3.pdb.
metal binding protein 13-jan-07 2je3
Fe
Title: cytochrome p460 from nitrosomonas europaea - probable physiological form
Author: a. r. pearson, b. o. elmore, c. yang, j. d. ferrara, a. b. hooper, c. m. wilmot
Keywords: cytochrome p460, cross-linked heme, metal binding protein
- 2jem.pdb.
hydrolase 18-jan-07 2jem
Title: native family 12 xyloglucanase from bacillus licheniformis
Author: t. m. gloster, f. m. ibatullin, k. macauley, j. m. eklof, s. roberts, j. p. turkenburg, m. e. bjornvad, p. l. jorgensen, s. danielsen, k. s. johansen, t. v. borchert, k. s. wilson, h. brumer, g. j. davies
Keywords: glycosidase, xyloglucanase, hydrolase, family 12
- 2jen.pdb.
hydrolase 18-jan-07 2jen
Title: family 12 xyloglucanase from bacillus licheniformis in complex with ligand
Author: t. m. gloster, f. m. ibatullin, k. macauley, j. m. eklof, s. roberts, j. p. turkenburg, m. e. bjornvad, p. l. jorgensen, s. danielsen, k. s. johansen, t. v. borchert, k. s. wilson, h. brumer, g. j. davies
Keywords: glycosidase, xyloglucanase, hydrolase, family 12
- 2jep.pdb.
hydrolase 18-jan-07 2jep
Ca
Title: native family 5 xyloglucanase from paenibacillus pabuli
Author: t. m. gloster, f. m. ibatullin, k. macauley, j. m. eklof, s. roberts, j. p. turkenburg, m. e. bjornvad, p. l. jorgensen, s. danielsen, k. johansen, t. v. borchert, k. s. wilson, h. brumer, g. j. davies
Keywords: xyloglucanase, plant cell wall, hydrolase
- 2jeq.pdb.
hydrolase 18-jan-07 2jeq
Title: family 5 xyloglucanase from paenibacillus pabuli in complex with ligand
Author: t. m. gloster, f. m. ibatullin, k. macauley, j. m. eklof, s. roberts, j. p. turkenburg, m. e. bjornvad, p. l. jorgensen, s. danielsen, k. johansen, t. v. borchert, k. s. wilson, h. brumer, g. j. davies
Keywords: xyloglucanase, plant cell wall, hydrolase
- 2jey.pdb.
hydrolase 25-jan-07 2jey
Title: mus musculus acetylcholinesterase in complex with hlo-7
Author: f. ekstrom, c. astot, y. p. pang
Keywords: alternative splicing, oxime, mouse, hlo-7, synapse, membrane, hydrolase, neurotransmitter degradation, mus musculus, glycoprotein, serine esterase
- 2jez.pdb.
hydrolase 25-jan-07 2jez
Title: mus musculus acetylcholinesterase in complex with tabun and hlo-7
Author: f. ekstrom, c. astot, y. p. pang
Keywords: alternative splicing, neurotransmitter degradation, hydrolase, mus musculus, glycoprotein, serine esterase, oxime, mouse, hlo-7, tabun, synapse, membrane
- 2jf0.pdb.
hydrolase 25-jan-07 2jf0
Title: mus musculus acetylcholinesterase in complex with tabun and ortho-7
Author: f. ekstrom, c. astot, y. p. pang
Keywords: alternative splicing, neurotransmitter degradation, hydrolase, mus musculus, glycoprotein, serine esterase, oxime, mouse, tabun, synapse, ortho-7, membrane
- 2jfn.pdb.
isomerase 03-feb-07 2jfn
Title: crystal structure of escherichia coli glutamate racemase in complex with l-glutamate and activator udp-murnac-ala
Author: t. lundqvist
Keywords: isomerase, cell shape, udp- murnac-ala, peptidoglycan biosynthesis, glutamate racemase, peptidoglycan synthesis
- 2jfo.pdb.
isomerase 03-feb-07 2jfo
Title: crystal structure of enterococcus faecalis glutamate racemase in complex with d- and l-glutamate
Author: t. lundqvist
Keywords: peptidoglycan biosynthesis, isomerase
- 2jfp.pdb.
isomerase 03-feb-07 2jfp
Ca
Title: crystal structure of enterococcus faecalis glutamate racemase in complex with d-glutamate
Author: t. lundqvist
Keywords: peptidoglycan biosynthesis, isomerase
- 2jfq.pdb.
isomerase 04-feb-07 2jfq
Title: crystal structure of staphylococcus aureus glutamate racemase in complex with d-glutamate
Author: t. lundqvist
Keywords: isomerase, cell shape, glutamate racemase, peptidoglycan synthesis, peptidoglycan biosynthesis
- 2jfu.pdb.
isomerase 04-feb-07 2jfu
Title: crystal structure of enterococcus faecium glutamate racemase in complex with phosphate
Author: t. lundqvist
Keywords: isomerase, glutamate racemase
- 2jfv.pdb.
isomerase 06-feb-07 2jfv
Title: crystal structure of enterococcus faecium glutamate racemase in complex with citrate
Author: t. lundqvist
Keywords: peptidoglycan biosynthesis, isomerase
- 2jfw.pdb.
isomerase 06-feb-07 2jfw
Title: crystal structure of enterococcus faecium glutamate racemase in complex with tartrate
Author: t. lundqvist
Keywords: isomerase, glutamate racemase
- 2jfx.pdb.
isomerase 06-feb-07 2jfx
Title: crystal structure of helicobacter pylori glutamate racemase in complex with d-glutamate
Author: y. xue, t. lundqvist
Keywords: isomerase, cell shape, glutamate racemase, peptidoglycan synthesis, peptidoglycan biosynthesis
- 2jfz.pdb.
isomerase 06-feb-07 2jfz
Title: crystal structure of helicobacter pylori glutamate racemase in complex with d-glutamate and an inhibitor
Author: t. lundqvist
Keywords: isomerase, cell shape, glutamate racemase, peptidoglycan synthesis, peptidoglycan biosynthesis
- 2jg4.pdb.
hydrolase 07-feb-07 2jg4
Zn
Title: substrate-free ide structure in its closed conformation
Author: e. malito, w. j. tang
Keywords: metal-binding, metalloprotease, protease, zinc, x-ray crystallography
- 2jgw.pdb.
immune response 15-feb-07 2jgw
(NMR, 20 structures)
Title: structure of ccp module 7 of complement factor h - the amd at risk varient (402h)
Author: a. p. herbert, j. a. deakin, c. q. schmidt, b. s. blaum, c. egan, v. p. ferreira, m. k. pangburn, m. lyon, d. uhrin, p. n. barlow
Keywords: polymorphism
- 2jgx.pdb.
immune response 16-feb-07 2jgx
(NMR, 20 structures)
Title: structure of ccp module 7 of complement factor h - the amd not at risk varient (402y)
Author: a. p. herbert, j. a. deakin, c. q. schmidt, b. s. blaum, c. egan, v. p. ferreira, m. k. pangburn, m. lyon, d. uhrin, p. n. barlow
Keywords: polymorphism
- 2jhj.pdb.
hydrolase 22-feb-07 2jhj
Na
Title: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
Author: i. leiros, m. p. nabong, k. grosvik, j. ringvoll, g. t. haugland, l. uldal, k. reite, i. k. olsbu, i. knaevelsrud, e. moe, o. a. andersen, n. k. birkeland, p. ruoff, a. klungland, s. bjelland
Keywords: dna repair, n1-methyladenine, n3-methylcytosine, hyperthermophiles, archaeoglobus fulgidus, hydrolase
- 2jhn.pdb.
hydrolase 22-feb-07 2jhn
Hg Na
Title: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
Author: i. leiros, m. p. nabong, k. grosvik, j. ringvoll, g. t. haugland, l. uldal, k. reite, i. k. olsbu, i. knaevelsrud, e. moe, o. a. andersen, n. k. birkeland, p. ruoff, a. klungland, s. bjelland
Keywords: dna repair, n1-methyladenine, n3-methylcytosine, hyperthermophiles, archaeoglobus fulgidus, hydrolase
- 2jie.pdb.
hydrolase 28-feb-07 2jie
F
Title: beta-glucosidase b from bacillus polymyxa complexed with 2- f-glucose
Author: p. isorna, j. polaina, j. sanz-aparicio
Keywords: carbohydrate metabolism, polysaccharide degradation, 2-f-glucose complex, cellulose degradation, hydrolase, glycosidase, beta-glucosidase
- 2jmi.pdb.
protein binding 15-nov-06 2jmi
Zn
(NMR, 20 structures)
Title: nmr solution structure of phd finger fragment of yeast yng1 protein in free state
Author: s. ilin, s. d. taverna, r. s. rogers, j. c. tanny, h. lavender, h. li, l. baker, j. boyle, l. p. blair, b. t. chait, d. j. patel, j. d. aitchison, a. j. tackett, c. d. allis
Keywords: nmr, histone, recognition, yeast
- 2jmj.pdb.
protein binding 15-nov-06 2jmj
Zn
(NMR, 20 structures)
Title: nmr solution structure of the phd domain from the yeast yng1 protein in complex with h3(1-9)k4me3 peptide
Author: s. ilin, s. d. taverna, r. s. rogers, j. c. tanny, h. lavender, h. li, l. baker, j. boyle, l. p. blair, b. t. chait, d. j. patel, j. d. aitchison, a. j. tackett, c. d. allis
Keywords: histone, phd, h3k4me3, complex
- 2jmm.pdb.
membrane protein 20-nov-06 2jmm
(NMR, 10 structures)
Title: nmr solution structure of a minimal transmembrane beta- barrel platform protein
Author: m. u. johansson, s. alioth, k. hu, r. walser, r. koebnik, k. pervushin
- 2jn3.pdb.
lipid binding protein 22-dec-06 2jn3
(NMR, 20 structures)
Title: nmr structure of cl-babp complexed to chenodeoxycholic acid
Author: t. eliseo, l. ragona, m. catalano, m. assfalf, m. paci, l. zetta, h. molinari, d. o. cicero
Keywords: binding, nmr
- 2jpc.pdb.
dna binding protein 03-may-07 2jpc
(NMR, 20 structures)
Title: ssrb dna binding protein
Author: x. liao, l. kenney, w. sheng, integrated center for structure and function innovation (isfi)
Keywords: structural genomics, psi-2, protein structure initiative, integrated center for structure and function innovation, isfi
- 2jpu.pdb.
structural genomics 23-may-07 2jpu
(NMR, 20 structures)
Title: solution structure of nesg target ssr10, orf c02003 protein
Author: y. wu, k. singarapu, q. zhang, a. eletski, d. xu, d. sukumaran, d. parish, d. wang, m. jiang, k. cunningham, m. maglaqui, l. owens, r. xiao, j. liu, m. baran, g. v. t. swapna, t. acton, b. rost, g. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: solution structure, ssr10, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2jq7.pdb.
structural protein/rna/antibiotic 30-may-07 2jq7
(NMR, 10 structures)
Title: model for thiostrepton binding to the ribosomal l11-rna
Author: h. r. a. jonker, s. ilin, s. k. grimm, j. woehnert, h. schwalbe
Keywords: rna, thiostrepton, ribosome, thiazole, antibiotic
- 2jqn.pdb.
structural genomics 05-jun-07 2jqn
(NMR, 20 structures)
Title: solution nmr structure of cc0527 from caulobacter crescentus. northeast structural genomics target ccr55
Author: j. m. aramini, p. rossi, h. n. b. moseley, d. wang, c. nwosu, k. cunningham, l. ma, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2jqo.pdb.
structural genomics 06-jun-07 2jqo
(NMR, 20 structures)
Title: nmr solution structure of bacillus subtilis yoba 21-120: northeast structural genomics consortium target sr547
Author: j. r. cort, t. a. ramelot, c. x. cort, m. jang, k. cunningham, l. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: ob-fold, beta barrel, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2jr2.pdb.
structural genomics, unknown function 19-jun-07 2jr2
(NMR, 20 structures)
Title: nmr solution structure of colwellia psychrerythraea protein cps_2611. northeast structural genomics target csr4
Author: t. a. ramelot, j. r. cort, h. wang, c. nwosu, k. cunningham, l. owens, l- c. ma, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: all alpha helix, homodimer, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2jra.pdb.
structural genomics, unknown function 21-jun-07 2jra
(NMR, 20 structures)
Title: a novel domain-swapped solution nmr structure of protein rpa2121 from rhodopseudomonas palustris. northeast structural genomics target rpt6
Author: b. wu, a. yee, a. lemak, j. cort, s. bansal, a. semest, v. guido, m. a. kennedy, j. h. prestegard, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2no0.pdb.
transferase 24-oct-06 2no0
F
Title: c4s dck variant of dck in complex with gemcitabine+adp
Author: e. sabini, s. hazra, m. konrad, s. k. burley, a. lavie
Keywords: gemcitabine, human deoxycytidine kinase
- 2no1.pdb.
transferase 24-oct-06 2no1
Title: c4s dck variant of dck in complex with d-dc+adp
Author: e. sabini, s. hazra, m. konrad, s. k. burley, a. lavie
Keywords: human deoxycytidine kinase, d-dc
- 2no6.pdb.
transferase 25-oct-06 2no6
F
Title: c4s dck variant of dck in complex with ftc+adp
Author: e. sabini, s. hazra, m. konrad, s. k. burley, a. lavie
Keywords: emtricitabine, human deoxycytidine kinase, ftc, enantiomer, antiviral
- 2no7.pdb.
transferase 25-oct-06 2no7
Title: c4s dck variant of dck in complex with l-dc+adp
Author: e. sabini, s. hazra, m. konrad, s. k. burley, a. lavie
Keywords: human deoxycytidine kinase, l-dc, enantiomer, enantioselectivity
- 2nyj.pdb.
transport protein 20-nov-06 2nyj
Se
Title: crystal structure of the ankyrin repeat domain of trpv1
Author: x. jin, r. gaudet
Keywords: ankyrin repeat domain
- 2nyr.pdb.
hydrolase 21-nov-06 2nyr
Zn
Title: crystal structure of human sirtuin homolog 5 in complex with suramin
Author: j. r. min, t. antoshenko, a. allali-hassani, a. dong, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2nz5.pdb.
oxidoreductase 22-nov-06 2nz5
Fe
Title: structure and function studies of cytochrome p450 158a1 from streptomyces coelicolor a3(2)
Author: b. zhao, d. c. labm, s. l. kelly, m. r. waterman
- 2nza.pdb.
oxidoreductase 22-nov-06 2nza
Fe
Title: structure and function studies of cytochrome p450 158a1 from streptomyces coelicolor a3(2)
Author: b. zhao, m. r. waterman
- 2o5i.pdb.
transferase/dna/rna 06-dec-06 2o5i
Mg Zn
Title: crystal structure of the t. thermophilus rna polymerase elongation complex
Author: d. g. vassylyev, t. h. tahirov, m. n. vassylyeva
Keywords: elongation complex, template dna, non- template dna, rna transcript
- 2o5j.pdb.
transferase/dna/rna 06-dec-06 2o5j
Mg Zn
Title: crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Author: d. g. vassylyev, m. n. vassylyeva
Keywords: elongation complex, template dna, non- template dna, rna transcript, ntp substrate
- 2obv.pdb.
transferase 20-dec-06 2obv
Na
Title: crystal structure of the human s-adenosylmethionine synthetase 1 in complex with the product
Author: e. s. pilka, n. shafqat, k. l. kavanagh, c. cooper, v. hozjan, a. turnbull, f. von delft, c. h. arrowsmith, a. edwards, j. weigelt, m. sundstrom, u. oppermann, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2p2g.pdb.
transferase 07-mar-07 2p2g
Title: crystal structure of ornithine carbamoyltransferase from mycobacterium tuberculosis (rv1656): orthorhombic form
Author: r. sankaranarayanan, m. m. cherney, l. t. cherney, c. garen, f. moradian, m. n. g. james, tb structural genomics consortium (tbsgc)
Keywords: mycobacterium tuberculosis, ornithine carbamyoltransferase, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 2p88.pdb.
lyase 22-mar-07 2p88
Mg
Title: crystal structure of n-succinyl arg/lys racemase from bacillus cereus atcc 14579
Author: a. a. fedorov, l. song, e. v. fedorov, j. a. gerlt, s. c. almo
Keywords: prediction of function, n-succinyl amino acid racemase
- 2p8b.pdb.
lyase 22-mar-07 2p8b
Mg
Title: crystal structure of n-succinyl arg/lys racemase from bacillus cereus atcc 14579 complexed with n-succinyl lys.
Author: a. a. fedorov, l. song, e. v. fedorov, j. a. gerlt, s. c. almo
Keywords: prediction of function, n-succinyl amino acid racemase
- 2p8c.pdb.
lyase 22-mar-07 2p8c
Mg
Title: crystal structure of n-succinyl arg/lys racemase from bacillus cereus atcc 14579 complexed with n-succinyl arg.
Author: a. a. fedorov, l. song, e. v. fedorov, j. a. gerlt, s. c. almo
Keywords: prediction of function, n-succinyl amino acid racemase
- 2p9m.pdb.
structural genomics, unknown function 26-mar-07 2p9m
Se
Title: crystal structure of conserved hypothetical protein mj0922 from methanocaldococcus jannaschii dsm 2661
Author: m. zhao, a. ebihara, a. shinkai, s. kuramitsu, s. yokoyama, j. zhu, j. t. swindell ii, l. chen, z-q. fu, j. charz, j. p. rose, b-c. wang, southeast collaboratory for structural genomics (secsg), riken structural genomics/proteomics initiative (rsgi)
Keywords: protein structure initiative
- 2pa7.pdb.
isomerase 27-mar-07 2pa7
Cl
Title: structure of wild-type dtdp-4-keto-6-deoxy-d-glucose-3,4- ketoisomerase from aneurinibacillus thermoaerophilus in complex with tdp
Author: m. l. davis, j. b. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pae.pdb.
isomerase 27-mar-07 2pae
Title: structure of a h49n mutant dtdp-4-keto-6-deoxy-d-glucose-3, 4-ketoisomerase from aneurinibacillus thermoaerophilus in complex with tdp
Author: m. l. davis, j. b. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pak.pdb.
isomerase 27-mar-07 2pak
Title: structure of a h51n mutant dtdp-4-keto-6-deoxy-d-glucose-3, 4-ketoisomerase from aneurinibacillus thermoaerophilus complexed with tdp
Author: m. l. davis, j. b. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pam.pdb.
isomerase 27-mar-07 2pam
Title: structure of a h49n, h51n double mutant dtdp-4-keto-6-deoxy- d-glucose-3,4-ketoisomerase from aneurinibacillus thermoaerophilus complexed with tdp
Author: m. l. davis, j. b. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pbw.pdb.
membrane protein 29-mar-07 2pbw
Title: crystal structure of the ligand-binding core of iglur5 in complex with the partial agonist domoic acid at 2.5 a resolution
Author: h. hald, p. naur, m. gajhede, j. s. kastrup
- 2pfe.pdb.
hydrolase 04-apr-07 2pfe
Title: crystal structure of thermobifida fusca protease a (tfpa)
Author: b. a. kelch, d. a. agard
- 2pgz.pdb.
choline binding protein 10-apr-07 2pgz
Title: crystal structure of cocaine bound to an ach-binding protein
Author: s. b. hansen, p. taylor
Keywords: nicotinic acetycholine receptors, acetycholine-binding protein, benzodiazepine, galanthamine, cocaine
- 2ph9.pdb.
choline-binding protein 10-apr-07 2ph9
Title: galanthamine bound to an ach-binding protein
Author: s. b. hansen, p. taylor
Keywords: nicotinic acetylcholine receptor, acetylcholine-binding protein, benzodiazepine, galanthamine
- 2pjd.pdb.
transferase 16-apr-07 2pjd
Se
Title: crystal structure of 16s rrna methyltransferase rsmc
Author: s. sunita, e. purta, m. durawa, k. l. tkaczuk, j. m. bujnicki, j. sivaraman
Keywords: gene duplication, rna modification, sam binding
- 2pk2.pdb.
cell cycle 17-apr-07 2pk2
Title: cyclin box structure of the p-tefb subunit cyclin t1 derived from a fusion complex with eiav tat
Author: k. anand, a. schulte, k. fujinaga, k. scheffzek, m. geyer
Keywords: tat, tar, twinning, transcription regulation p- tefb
- 2pm6.pdb.
protein transport 20-apr-07 2pm6
Title: crystal structure of yeast sec13/31 edge element of the copii vesicular coat, native version
Author: j. goldberg, s. fath, j. d. mancias, x. bi
Keywords: alpha solenoid
- 2pm7.pdb.
protein transport 20-apr-07 2pm7
Se
Title: crystal structure of yeast sec13/31 edge element of the copii vesicular coat, selenomethionine version
Author: j. goldberg, s. fath, j. d. mancias, x. bi
Keywords: alpha solenoid
- 2pm9.pdb.
protein transport 20-apr-07 2pm9
Title: crystal structure of yeast sec13/31 vertex element of the copii vesicular coat
Author: j. goldberg, s. fath, j. d. mancias, x. bi
- 2pnd.pdb.
immune system 24-apr-07 2pnd
Title: structure or murine crig
Author: c. wiesmann
Keywords: ig-like domain
- 2pnn.pdb.
transport protein 24-apr-07 2pnn
Se
Title: crystal structure of the ankyrin repeat domain of trpv1
Author: x. jin, r. gaudet
Keywords: ankyrin repeat domain
- 2po6.pdb.
lipid binding protein/immune system 25-apr-07 2po6
Title: crystal structure of cd1d-lipid-antigen complexed with beta- 2-microglobulin, nkt15 alpha-chain and nkt15 beta-chain.
Author: n. a. borg
- 2poi.pdb.
signaling protein/apoptosis 26-apr-07 2poi
Zn
Title: crystal structure of xiap bir1 domain (i222 form)
Author: s. lin
- 2pom.pdb.
signaling protein/metal binding protein 26-apr-07 2pom
Mn
Title: tab1 with manganese ion
Author: s. c. lin
- 2pop.pdb.
signaling protein/apoptosis 27-apr-07 2pop
Zn
Title: the crystal structure of tab1 and bir1 complex
Author: s. c. lin
Keywords: pp2c-like domain, bir domain
- 2psc.pdb.
hydrolase 05-may-07 2psc
Title: crystal structure of a papain-like cysteine protease ervatamin-a complexed with irreversible inhibitor e-64
Author: r. ghosh, c. chakrabarti, j. k. dattagupta, s. biswas
Keywords: papain-like fold, plant cysteine protease, ervatamin
- 2pto.pdb.
transferase 08-may-07 2pto
Title: mutagenesis of p38 map kinase establishes key roles of phe169 in function and dynamics and reveals a novel dfg- out state
Author: h. v. m. namboodiri, e. b. springman, m. karpusas, m. bukhtiyarova, k. northrop
- 2ptq.pdb.
lyase 08-may-07 2ptq
Title: crystal structure of escherichia coli adenylosuccinate lyase mutant h171n with bound amp and fumarate
Author: m. tsai, p. l. howell
Keywords: mutant-product complex
- 2ptr.pdb.
lyase 08-may-07 2ptr
Title: crystal structure of escherichia coli adenylosuccinate lyase mutant h171a with bound adenylosuccinate substrate
Author: m. tsai, p. l. howell
Keywords: mutant-substrate complex
- 2pts.pdb.
lyase 08-may-07 2pts
Se
Title: crystal structure of wild type escherichia coli adenylosuccinate lyase
Author: m. tsai, p. l. howell
Keywords: wild-type-selenomethionine substituted
- 2pv5.pdb.
transferase 09-may-07 2pv5
Title: mutagenesis of p38 map kinase establishes key roles of phe169 in function and structural dynamics and reveals a novel dfg-out state
Author: h. v. m namboodiri, e. b springman, m. karpusas, m. bukhtiyarova, k. northrop
- 2py2.pdb.
antifreeze protein 15-may-07 2py2
Ca
Title: structure of herring type ii antifreeze protein
Author: y. liu, z. li, q. lin, j. seetharaman, j. sivaraman, c. -l. hew
- 2pyz.pdb.
hydrolase 17-may-07 2pyz
Ca
Title: crystal structure of the complex of proteinase k with auramine at 1.8a resolution
Author: a. k. singh, n. singh, m. sinha, s. sharma, a. bhushan, p. kaur, t. p. singh
Keywords: inhibition
- 2q0k.pdb.
oxidoreductase 22-may-07 2q0k
Title: oxidized thioredoxin reductase from helicobacter pylori in complex with nadp+
Author: t. sandalova, t. gustafsson, j. lu, a. holmgren, g. schneider
Keywords: helicobacter pylori, nadp+ binding
- 2q0l.pdb.
oxidoreductase 22-may-07 2q0l
Title: helicobacter pylori thioredoxin reductase reduced by sodium dithionite in complex with nadp+
Author: t. sandalova, t. gustafsson, j. lu, a. holmgren, g. schneider
Keywords: helicobacter pylori, nadp+ binding, reduced izoalloxazine bending
- 2q24.pdb.
transcription 25-may-07 2q24
Cl Se
Title: crystal structure of tetr transcriptional regulator sco0520 from streptomyces coelicolor
Author: m. cymborowski, m. chruszcz, k. d. koclega, k. filippova, x. xu, j. gu, a. savchenko, a. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2q3e.pdb.
oxidoreductase 30-may-07 2q3e
Cl
Title: structure of human udp-glucose dehydrogenase complexed with nadh and udp-glucose
Author: k. l. kavanagh, k. guo, p. bunkoczi, e. savitsky, e. pilka, c. bhatia, c. smee, g. berridge, f. von delft, j. wiegelt, c. arrowsmith, m. sundstrom, a. edwards, u. oppermann, structural genomics consortium (sgc)
Keywords: hexamer, structural genomics, structural genomics consortium, sgc
- 2q5c.pdb.
transcription 31-may-07 2q5c
Title: crystal structure of ntrc family transcriptional regulator from clostridium acetobutylicum
Author: u. a. ramagopal, m. dickey, r. toro, m. iizuka, k. groshong, l. rodgers, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: ntrc family transcriptional regulator, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2q7d.pdb.
transferase 06-jun-07 2q7d
Mn
Title: crystal structure of human inositol 1,3,4-trisphosphate 5/6- kinase (itpk1) in complex with amppnp and mn2+
Author: p. p. chamberlain, s. a. lesley, g. spraggon
Keywords: inositol kinase, kinase, itpk1, inositol 1,3,4- 5/6-kinase, phosphate, inositol phosphate, inositolphosphate, polyphosphate
- 2q87.pdb.
immune system 09-jun-07 2q87
Title: the crystal structure of the human irp60 ectodomain
Author: n. dimasi, j. a. marquez
Keywords: negative regulation of natural killer cells, negative regulation of natural mast cells, membrane protein, irp60, cmrf35, irem, ncr
- 2q8c.pdb.
oxidoreductase 10-jun-07 2q8c
Zn Ni
Title: crystal structure of jmjd2a in ternary complex with an histone h3k9me3 peptide and 2-oxoglutarate
Author: j-f. couture, e. collazo, p. ortiz-tello, j. s. brunzelle, r. c. trievel
Keywords: hydroxylase, jumonji
- 2q8d.pdb.
oxidoreductase 10-jun-07 2q8d
Zn Ni
Title: crystal structure of jmj2d2a in ternary complex with histone h3-k36me2 and succinate
Author: j-f. couture, e. collazo, p. ortiz-tello, j. s. brunzelle, r. c. trievel
Keywords: hydroxylase, succinate
- 2q8e.pdb.
oxidoreductase 10-jun-07 2q8e
Zn Ni
Title: specificity and mechanism of jmjd2a, a trimethyllysine- specific histone demethylase
Author: j-f. couture, e. collazo, p. ortiz-tello, j. s. brunzelle, r. c. trievel
Keywords: hydroxylase, n-oxalylglycine
- 2q9a.pdb.
signaling protein 12-jun-07 2q9a
Title: structure of apo ftsy
Author: c. l. reyes, r. m. stroud
Keywords: ribonucleoprotein, nucleotide-binding, signal recognition particle, srp, gdp, ffh, ftsy, gtpase, rna-binding, gtp-binding, cell division, membrane, cell cycle
- 2q9b.pdb.
signaling protein 12-jun-07 2q9b
Title: structure of ftsy:gmppnp complex
Author: c. l. reyes, r. m. stroud
Keywords: ribonucleoprotein, nucleotide-binding, signal recognition particle, srp, gdp, ffh, ftsy, gtpase, rna-binding, gtp-binding, cell division, membrane, cell cycle
- 2q9c.pdb.
signaling protein 12-jun-07 2q9c
Title: structure of ftsy:gmppnp with mgcl complex
Author: c. l. reyes, r. m. stroud
Keywords: ribonucleoprotein, nucleotide-binding, signal recognition particle, srp, gdp, ffh, ftsy, gtpase, rna-binding, gtp-binding, cell division, membrane, cell cycle
- 2qb5.pdb.
transferase 15-jun-07 2qb5
Mn
Title: crystal structure of human inositol 1,3,4-trisphosphate 5/6- kinase (itpk1) in complex with adp and mn2+
Author: p. p. chamberlain, s. a. lesley, g. spraggon
Keywords: inositol kinase, kinase, itpk1, inositol 1,3,4- 5/6-kinase, phosphate, inositol phosphate, inositolphosphate, polyphosphate
- 2qc0.pdb.
structural genomics, unknown function 18-jun-07 2qc0
Se
Title: crystal structure of uncharacterized protein (np_719793.1) from shewanella oneidensis at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2qc8.pdb.
ligase 19-jun-07 2qc8
Cl Mn
Title: crystal structure of human glutamine synthetase in complex with adp and methionine sulfoximine phosphate
Author: t. karlberg, l. lehtio, c. h. arrowsmith, h. berglund, r. d. busam, r. collins, l. g. dahlgren, a. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, m. hogbom, i. johansson, a. kallas, t. kotenyova, m. moche, p. nordlund, t. nyman, c. persson, j. sagemark, m. sundstrom, a. g. thorsell, s. van den berg, j. weigelt, l. holmberg-schiavone, structural genomics consortium (sgc)
Keywords: ligase, synthetase, structural genomics, structural genomics consortium, sgc
- 2qca.pdb.
hydrolase 19-jun-07 2qca
Title: a new crystal form of bovine pancreatic rnase a in complex with 2'-deoxyguanosine-5'-monophosphate
Author: s. b. larson, j. s. day, r. cudney, a. mcpherson, center for high- throughput structural biology (chtsb)
Keywords: protein-nucleotide complex, structural genomics, psi-2, protein structure initiative, center for high-throughput structural biology, chtsb
- 2qck.pdb.
oxidoreductase 19-jun-07 2qck
Se
Title: crystal structure of flavin reductase domain protein (yp_831077.1) from arthrobacter sp. fb24 at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: flavin reductase domain protein, flavin reductase like domain, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2qde.pdb.
lyase 20-jun-07 2qde
Ba
Title: crystal structure of mandelate racemase/muconate lactonizing family protein from azoarcus sp. ebn1
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-ii, nysgxrc, 9379a, enolase, structural genomics, protein structure initiative, psi-2, new york structural genomix research consortium
- 2qe6.pdb.
structural genomics, unknown function 22-jun-07 2qe6
Se
Title: crystal structure of uncharacterized protein tfu_2867 (yp_290923.1) from thermobifida fusca yx at 1.95 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized protein tfu_2867, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2uws.pdb.
photosynthesis 23-mar-07 2uws
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 6.5 in the charge-separated state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2uwt.pdb.
photosynthesis 23-mar-07 2uwt
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 6.5 in the charge-separated state 2nd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2uwu.pdb.
photosynthesis 23-mar-07 2uwu
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 6.5 in the neutral state, 2nd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2uwv.pdb.
photosynthesis 23-mar-07 2uwv
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 6.5 in the charge-separated state, 3rd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2uww.pdb.
photosynthesis 23-mar-07 2uww
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 6.5 in the neutral state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2ux3.pdb.
photosynthesis 26-mar-07 2ux3
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 9 in the neutral state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2ux4.pdb.
photosynthesis 26-mar-07 2ux4
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 9 in the charge- separated state, 2nd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2ux5.pdb.
photosynthesis 26-mar-07 2ux5
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 9 in the charge- separated state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: membrane, transport, magnesium, chromophore, binding positions of the secondary quinone qb
- 2uxj.pdb.
photosynthesis 28-mar-07 2uxj
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 10 in the neutral state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: bacteriochlorophyll, proton translocation pathways
- 2uxk.pdb.
photosynthesis 28-mar-07 2uxk
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 10 in the charge-separated state
Author: j. koepke, r. diehm, g. fritzsch
Keywords: bacteriochlorophyll, proton translocation pathways
- 2uxl.pdb.
photosynthesis 28-mar-07 2uxl
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 10 in the neutral state, 2nd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: bacteriochlorophyll, proton translocation pathways
- 2uxm.pdb.
photosynthesis 28-mar-07 2uxm
Mg Fe
Title: x-ray high resolution structure of the photosynthetic reaction center from rb. sphaeroides at ph 10 in the charge-separated state, 2nd dataset
Author: j. koepke, r. diehm, g. fritzsch
Keywords: bacteriochlorophyll, proton translocation pathways
- 2uy1.pdb.
rna-binding protein 02-apr-07 2uy1
Title: crystal structure of cstf-77
Author: p. legrand, n. pinaud, l. minvielle-sebastia, s. fribourg
- 2uyy.pdb.
cytokine 20-apr-07 2uyy
K
Title: structure of the cytokine-like nuclear factor n-pac
Author: j. tickle, e. s. pilka, g. bunkoczi, g. berridge, c. smee, k. l. kavanagh, v. hozjan, f. h. niesen, e. papagrigoriou, a. c. w. pike, a. turnbull, c. h. arrowsmith, a. edwards, m. sundstrom, j. weigelt, f. von delft, u. oppermann
Keywords: cytokine
- 2uyz.pdb.
ligase 21-apr-07 2uyz
Na
Title: non-covalent complex between ubc9 and sumo1
Author: p. knipscheer, w. j. van dijk, j. v. olsen, m. mann, t. k. sixma
Keywords: cell division, nuclear protein, ubiquitin-like modifier, ubl conjugation pathway, conjugating enzyme, chromosome partition, e2, ubc9, sumo1, ligase, mitosis, cell cycle
- 2uzb.pdb.
transferase 27-apr-07 2uzb
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide- binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uzd.pdb.
transferase 27-apr-07 2uzd
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide- binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uze.pdb.
transferase 27-apr-07 2uze
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide- binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uzl.pdb.
transferase 30-apr-07 2uzl
F
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide- binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uzn.pdb.
transferase 30-apr-07 2uzn
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide-binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uzo.pdb.
transferase 30-apr-07 2uzo
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: atp-binding, phosphorylation, cdk2, kinase, cyclin, mitosis, cell cycle, cell division, nucleotide- binding, serine/threonine-protein kinase, thiazolidinone ligand
- 2uzt.pdb.
transferase 01-may-07 2uzt
Title: pka structures of akt, indazole-pyridine inhibitors
Author: g. d. zhu, v. b. gandhi, j. gong, s. thomas, k. w. woods, x. song, t. li, r. b. diebold, y. luo, x. liu, r. guan, v. klinghofer, e. f. johnson, j. bouska, a. olson, k. c. marsh, v. s. stoll, m. mamo, j. polakowski, t. j. campbell, t. d. penning, q. li, s. h. rosenberg, v. l. giranda
Keywords: nuclear protein
- 2uzu.pdb.
transferase 01-may-07 2uzu
Title: pka structures of indazole-pyridine series of akt inhibitors
Author: g. d. zhu, v. b. gandhi, j. gong, s. thomas, k. w. woods, x. song, t. li, r. b. diebold, y. luo, x. liu, r. guan, v. klinghofer, e. f. johnson, j. bouska, a. olson, k. c. marsh, v. s. stoll, m. mamo, j. polakowski, t. j. campbell, t. d. penning, q. li, s. h. rosenberg, v. l. giranda
Keywords: nuclear protein
- 2uzw.pdb.
transferase 01-may-07 2uzw
Br
Title: pka structures of indazole-pyridine series of akt inhibitors
Author: g. d. zhu, v. b. gandhi, j. gong, s. thomas, k. w. woods, x. song, t. li, r. b. diebold, y. luo, x. liu, r. guan, v. klinghofer, e. f. johnson, j. bouska, a. olson, k. c. marsh, v. s. stoll, m. mamo, j. polakowski, t. j. campbell, t. d. penning, q. li, s. h. rosenberg, v. l. giranda
Keywords: kinase, myristate, transferase, lipoprotein, serine/threonine-protein kinase, phosphorylation, protein kinase a, nucleotide-binding, atp-binding, akt inhibitors, nuclear protein
- 2v0c.pdb.
ligase 14-may-07 2v0c
B F Zn
Title: leucyl-trna synthetase from thermus thermophilus complexed with a sulphamoyl analogue of leucyl-adenylate in the synthetic site and an adduct of amp with 5-fluoro-1,3- dihydro-1-hydroxy-2,1-benzoxaborole (an2690) in the editing site
Author: f. rock, w. mao, a. yaremchuk, m. tukalo, t. crepin, h. zhou, y. zhang, v. hernandez, t. akama, s. baker, j. plattner, l. shapiro, s. a. martinis, s. j. benkovic, s. cusack, m. r. k. alley
Keywords: protein biosynthesis, clss i aminoacyl-trna synthetase, atp + l-leucine + trna (leu) gives amp + ppi + l-leucyl-trna(leu), aminoacyl-trna synthetase, zinc, ligase, atp-binding, metal-binding
- 2v0d.pdb.
transferase 14-may-07 2v0d
Cl
Title: crystal structure of human cdk2 complexed with a thiazolidinone inhibitor
Author: c. m. richardson, p. dokurno, j. b. murray, a. e. surgenor
Keywords: nucleotide-binding, serine/threonine-protein kinase, transferase, atp-binding, cell division, nucleotide- binding, thiazolidinone ligand, cdk2, kinase, cyclin, mitosis, cell cycle
- 2v0g.pdb.
ligase 14-may-07 2v0g
Hg B F Zn
Title: leucyl-trna synthetase from thermus thermophilus complexed with a trna(leu) transcript with 5-fluoro-1,3-dihydro-1- hydroxy-2,1-benzoxaborole (an2690) forming an adduct to the ribose of adenosine-76 in the enzyme editing site.
Author: f. rock, w. mao, a. yaremchuk, m. tukalo, t. crepin, h. zhou, y. zhang, v. hernandez, t. akama, s. baker, j. plattner, l. shapiro, s. a. martinis, s. j. benkovic, s. cusack, m. r. k. alley
Keywords: atp- binding
- 2v0z.pdb.
hydrolase 21-may-07 2v0z
Title: crystal structure of renin with inhibitor 10 (aliskiren)
Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
- 2v10.pdb.
hydrolase 14-may-07 2v10
Title: crystal structure of renin with inhibitor 9
Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
- 2v11.pdb.
hydrolase 21-may-07 2v11
Title: crystal structure of renin with inhibitor 6
Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
- 2v12.pdb.
hydrolase 21-may-07 2v12
Title: crystal structure of renin with inhibitor 8
Author: j. rahuel, v. rasetti, j. maibaum, h. rueger, r. goschke, n. c. cohen, s. stutz, f. cumin, w. fuhrer, j. m. wood, m. g. grutter
Keywords: inhibitor-complex, aspartyl protease, zymogen, protease, hydrolase, polymorphism, alternative splicing, hydrolase(acid proteinase), cleavage on pair of basic residues
- 2v1c.pdb.
recombination 23-may-07 2v1c
Zn
Title: crystal structure and mutational study of recor provide insight into its role in dna repair
Author: j. timmins, i. leiros, s. mcsweeney
Keywords: recfor pathway, dna recombination, recombination, dna binding, zinc-finger, metal-binding, recor complex, hypothetical protein, deinococcus radiodurans, recr, zinc, reco, dna damage, dna repair
- 2v1o.pdb.
hydrolase 28-may-07 2v1o
Title: crystal structure of n-terminal domain of acyl-coa thioesterase 7
Author: j. k. forwood, a. s. thakur, g. guncar, m. marfori, d. mouradov, w. n. meng, j. robinson, t. huber, s. kellie, j. l. martin, d. a. hume, b. kobe
Keywords: acyl-coa thioesterase 7, serine esterase, protein structure, domain duplication, acot7, hydrolase, macrophage, hotdog domain
- 2v1x.pdb.
hydrolase 30-may-07 2v1x
Cl Mg Zn
Title: crystal structure of human recq-like dna helicase
Author: a. c. w. pike, b. shrestha, n. burgess-brown, o. king, e. ugochukwu, s. watt, a. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, o. gileadi
Keywords: mismatch repair, nucleotide-binding, dna-binding, polymorphism, nuclear protein, atpase, helicase, hydrolase, atp-binding
- 2v2k.pdb.
electron transport 06-jun-07 2v2k
Fe
Title: the crystal structure of fdxa, a 7fe ferredoxin from mycobacterium smegmatis
Author: s. ricagno, m. de rosa, a. aliverti, g. zanetti, m. bolognesi
Keywords: 4fe-4s cluster instability
- 2v2t.pdb.
transcription 06-jun-07 2v2t
Title: x-ray structure of a nf-kb p50-relb-dna complex
Author: a. k. moorthy, d. b. huang, v. y. wang, d. vu, g. ghosh
Keywords: aquifex aeolicus, nucleotide-binding, isoprene biosynthesis, transcription, kinase, transferase, atp-binding, non-mevalonate
- 2v3s.pdb.
transferase 21-jun-07 2v3s
Title: structural insights into the recognition of substrates and activators by the osr1 kinase
Author: f. villa, j. goebel, f. h. rafiqi, m. deak, j. thastrup, d. r. alessi, d. m. f. van aalten
Keywords: kinase, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, serine/threonine-protein kinase, transferase
- 2z3c.pdb.
hydrolase 04-jun-07 2z3c
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
- 2z3d.pdb.
hydrolase 04-jun-07 2z3d
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
- 2z3e.pdb.
hydrolase inhibitor,viral protein 04-jun-07 2z3e
Title: a mechanistic view of enzyme inhibition and peptide hydrolysis in the active site of the sars-cov 3c-like peptidase
Author: j. yin
Keywords: 3c-like peptidase, 3cl, main proteinase, chymotrypsin, viral cysteine protease
- 2z3t.pdb.
oxidoreductase 06-jun-07 2z3t
Fe
Title: crystal structure of substrate free cytochrome p450 stap (cyp245a1)
Author: m. makino, h. sugimoto, y. shiro, s. asamizu, h. onaka, s. nagano
Keywords: monoxygenase, oxydoreductase, heme-enzyme
- 2z3u.pdb.
oxidoreductase 06-jun-07 2z3u
Fe
Title: crystal structure of chromopyrrolic acid bound cytochrome p450 stap (cyp245a1)
Author: m. makino, h. sugimoto, y. shiro, s. asamizu, h. onaka, s. nagano
Keywords: monoxygenase, oxydoreductase, heme-enzyme, chromopyrrolic acid
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS