Recent PDB releases or updates: week of 18 May 2007
- 1k7k.pdb.
structural genomics, unknown function 19-oct-01 1k7k
Se
Title: crystal structure of rdgb- inosine triphosphate pyrophosphatase from e. coli
Author: r. sanishvili, a. joachimiak, a. edwards, a. savchenko, t. skarina, midwest center for structural genomics (mcsg)
Keywords: his-tag, large groove, disordered se-met, structural genomics, putative ribosomal protein, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 1vsa.pdb.
ribosome 15-feb-07 1vsa
Title: crystal structure of a 70s ribosome-trna complex reveals functional interactions and rearrangements. this file, 1vsa, contains the 50s ribosome subunit. 30s ribosome subunit is in the file 2ow8
Author: a. korostelev, s. trakhanov, m. laurberg, h. f. noller
Keywords: ribosome, functional complex, trna, e site, p site, peptidyl transferase center
- 1wco.pdb.
antibiotics 19-nov-04 1wco
(NMR, 20 structures)
Title: the solution structure of the nisin-lipid ii complex
Author: s. -t. d. hsu, e. breukink, e. tischenko, m. a. g. lutters, b. de kruijff, r. kaptein, a. m. j. j. bonvin, n. a. j. van nuland
Keywords: peptidoglycan, pore formation, pyrophosphate cage
- 2bpd.pdb.
receptor 19-apr-05 2bpd
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan,fungal recognition, c-type lectin-like domain, ctld,carbohydrate
- 2bpe.pdb.
receptor 19-apr-05 2bpe
Cl Ca
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan, fungal recognition, c-type lectin-like domain, ctld
- 2bph.pdb.
receptor 19-apr-05 2bph
Mg
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan, fungal recognition, c-type lectin-like domain, ctld, carbohydrate
- 2cdt.pdb.
sh3-domain 27-jan-06 2cdt
Title: alpha-spectrin sh3 domain a56s mutant
Author: s. casares, a. camara-artigas, m. c. vega, o. lopez-mayorga, f. conejero-lara
Keywords: cytoskeleton, calmodulin-binding, actin-binding
- 2ck1.pdb.
isomerase 10-apr-06 2ck1
Title: the structure of oxidised cyclophilin a from s. mansoni
Author: l. gourlay, f. angelucci, a. bellelli, g. boumis, a. miele, m. brunori
Keywords: cyclophilin, cyclosporin, rotamase activity, rotamase, isomerase, rna-binding, beta-barrel
- 2ck4.pdb.
ion channel inhibitor 10-apr-06 2ck4
(NMR, 20 structures)
Title: solution structure of aosk1
Author: s. alphonse, s. mouhat, j. m. sabatier, h. darbon, c. bernard
Keywords: ion channel blocker, ionic channel inhibitor, osk1, toxin, neurotoxin, scorpio toxin, ion channel inhibitor
- 2ck5.pdb.
ion channel inhibitor 10-apr-06 2ck5
(NMR, 20 structures)
Title: solution structure of delta 1-7 aosk1
Author: s. alphonse, s. mouhat, j. m. sabatier, h. darbon, c. bernard
Keywords: ion channel blocker, ionic channel inhibitor, osk1, toxin, neurotoxin, scorpio toxin, ion channel inhibitor
- 2cke.pdb.
transferase/inhibitor complex 18-apr-06 2cke
Title: human death-associated drp-1 kinase in complex with inhibitor
Author: p. kursula, m. wilmanns
Keywords: nucleotide-binding, atp-binding, protein kinase, phosphorylation, kinase, apoptosis, inhibitor, transferase, serine/threonine-protein kinase, transferase/inhibitor complex
- 2cl8.pdb.
receptor 26-apr-06 2cl8
Cl Ca
Title: dectin-1 in complex with beta-glucan
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: fungal recognition, ctld, receptor, dectin-1, laminarin, beta-glucan, c-type lectin-like domain
- 2cmn.pdb.
transferase 11-may-06 2cmn
Fe
Title: a proximal arginine residue in the switching mechanism of the fixl oxygen sensor
Author: m. -a. gilles-gonzalez, a. i. caceres, e. h. silva sousa, d. r. tomchick, c. a. brautigam, c. gonzalez, m. machius
Keywords: transferase, sensor kinase, metal-binding
- 2cmp.pdb.
terminase 11-may-06 2cmp
Title: crystal structure of the dna binding domain of g1p small terminase subunit from bacteriophage sf6
Author: s. benini, m. chechik, m. ortiz-lombardia, s. polier, m. b. shevtsov, d. deluchi, j. c. alonso, a. a. antson
Keywords: terminase, dna packaging, bacteriophage, dna binding domain
- 2cmt.pdb.
isomerase 12-may-06 2cmt
Title: the structure of reduced cyclophilin a from s. mansoni
Author: l. gourlay, f. angelucci, a. bellelli, g. boumis, a. miele, m. brunori
Keywords: rotamase, isomerase, rna-binding, cyclosporin, cyclophilin, schistosoma, beta-barrel
- 2cu7.pdb.
transcription 25-may-05 2cu7
(NMR, 20 structures)
Title: solution structure of the sant domain of human kiaa1915 protein
Author: m. yoneyama, t. umehara, k. saito, n. tochio, s. koshiba, m. inoue, a. tanaka, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2cuj.pdb.
transcription 26-may-05 2cuj
(NMR, 20 structures)
Title: solution structure of swirm domain of mouse transcriptional adaptor 2-like
Author: m. yoneyama, t. umehara, m. sato, n. tochio, s. koshiba, m. inoue, a. tanaka, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: nuclear protein, ada2, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d1k.pdb.
structural protein 26-aug-05 2d1k
Mg Ca
Title: ternary complex of the wh2 domain of mim with actin-dnase i
Author: d. chereau, f. kerff, r. dominguez
Keywords: wip, wh2, actin, dnase i
- 2d1l.pdb.
protein binding 27-aug-05 2d1l
Se
Title: structure of f-actin binding domain imd of mim (missing in metastasis)
Author: s. h. lee, f. kerff, d. chereau, f. ferron, r. dominguez
Keywords: actin binding, imd
- 2d3m.pdb.
transferase 29-sep-05 2d3m
Title: pentaketide chromone synthase complexed with coenzyme a
Author: h. morita, s. kondo, s. oguro, h. noguchi, s. sugio, i. abe, t. kohno
Keywords: chalcone synthase, polyketide synthase
- 2d51.pdb.
transferase 27-oct-05 2d51
Title: pentaketide chromone synthase (m207g mutant)
Author: t. kohno, h. morita
Keywords: chalcone synthase, polyketide synthase
- 2d52.pdb.
transferase 27-oct-05 2d52
Title: pentaketide chromone synthase (m207g mutant complexed with coa)
Author: t. kohno, h. morita
Keywords: chalcone synthase, polyketide synthase
- 2dce.pdb.
structural genomics, unknown function 06-jan-06 2dce
(NMR, 20 structures)
Title: solution structure of the swirm domain of human kiaa1915 protein
Author: m. yoneyama, n. tochio, t. umehara, s. koshiba, m. inoue, a. tanaka, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: kiaa1915, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dpd.pdb.
dna binding protein/dna 09-may-06 2dpd
Title: crystal structure of the replication termination protein in complex with a pseudosymmetric b-site
Author: j. p. vivian, j. wilce, m. c. j. wilce
Keywords: replication termination, fork arrest mechanism
- 2dpe.pdb.
signaling protein 11-may-06 2dpe
Title: crystal structure of a secretory 40kda glycoprotein from sheep at 2.0a resolution
Author: d. b. srivastava, a. s. ethayathulla, j. kumar, n. singh, s. sharma, u. das, a. srinivasan, t. p. singh
Keywords: involution, signaling protein
- 2dpf.pdb.
plant protein 11-may-06 2dpf
Title: crystal structure of curculin1 homodimer
Author: m. suzuki, e. kurimoto, t. kashiwagi, n. xu, n. shimba, e. suzuki, k. kato
Keywords: taste modifying
- 2dpu.pdb.
dna binding protein/dna 15-may-06 2dpu
Title: crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer b-site dna
Author: j. p. vivian, j. wilce, m. c. j. wilce
Keywords: winged-helix, dna replication
- 2dwv.pdb.
protein binding 17-aug-06 2dwv
(NMR, 20 structures)
Title: solution structure of the second ww domain from mouse salvador homolog 1 protein (mww45)
Author: s. ohnishi, t. kigawa, s. koshiba, t. tomizawa, m. sato, n. tochio, m. inoue, t. harada, s. watanabe, p. guntert, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: dimer, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dx8.pdb.
metal binding protein 24-aug-06 2dx8
Zn
Title: crystal structure analysis of the phd domain of the transcription coactivator pygophus
Author: b. padmanabhan, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: bcl9/lgs interactor, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e0z.pdb.
virus like particle 16-oct-06 2e0z
Title: crystal structure of virus-like particle from pyrococcus furiosus
Author: f. akita, k. t. chong, h. tanaka, e. yamashita, n. miyazaki, y. nakaishi, k. namba, y. ono, m. suzuki, t. tsukihara, a. nakagawa
Keywords: virus, bacteriophage, hk97, t4
- 2e29.pdb.
hydrolase 10-nov-06 2e29
(NMR, 20 structures)
Title: solution structure of the guct domain from human atp- dependent rna helicase ddx50, dead box protein 50
Author: s. ohnishi, k. paakkonen, p. guntert, m. sato, s. koshiba, t. harada, s. watanabe, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2e5l.pdb.
ribosome 21-dec-06 2e5l
Zn
Title: a snapshot of the 30s ribosomal subunit capturing mrna via the shine- dalgarno interaction
Author: t. kaminishi, d. n. wilson, c. takemoto, j. m. harms, m. kawazoe, f. schluenzen, k. hanawa-suetsugu, m. shirouzu, p. fucini, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2e9x.pdb.
replication 27-jan-07 2e9x
Title: the crystal structure of human gins core complex
Author: k. kamada, f. hanaoka
Keywords: eukaryotic dna replication
- 2efz.pdb.
toxin 26-feb-07 2efz
(NMR, 20 structures)
Title: solution structure of an m-1 conotoxin with a novel disulfide linkage
Author: w. h. fang, w. h. du, y. h. han, f. j. huang
- 2egn.pdb.
protein binding 01-mar-07 2egn
Title: crystal structure of tamalin pdz domain in complex with mglur5 c-terminal peptide
Author: t. sugi, t. oyama, t. muto, s. nakanishi, k. morikawa, h. jingami
Keywords: peptide complex
- 2gvn.pdb.
hydrolase 03-may-06 2gvn
Title: l-asparaginase from erwinia carotovora in complex with aspartic acid
Author: o. v. kravchenko, y. a. kislitsin, a. n. popov, s. v. nikonov, i. p. kuranova
Keywords: erwinia carotovora
- 2gw0.pdb.
deoxyribonucleic acid 03-may-06 2gw0
Na Ca
Title: a d(tggggt)- sodium and calcium complex.
Author: m. p. h. lee, g. n. parkinson, s. neidle
Keywords: quadruplex, g-quadruplex, tetraplex, g-tetraplex, quadruple helix, parallel-stranded, d(tggggt), hydrated calcium ion, calcium, calcium ion, sodium, sodium ion.
- 2gyk.pdb.
antibiotic/antibiotic inhibitor 09-may-06 2gyk
Zn
Title: crystal structure of the complex of the colicin e9 dnase domain with a mutant immunity protein, imme9 (d51a)
Author: p. s. santi, o. o. kolade, u. c. kuhlmann, a. m. hemmings
Keywords: 4-helix bundle, dnase domain, hnh- motif
- 2gzt.pdb.
transcription/rna 12-may-06 2gzt
Mg
Title: crystal structure of the hutp antitermination complex bound to the hut mrna
Author: t. s. kumarevel, d. balasundaresan, j. jeyakanthan, a. shinkai, s. yokoyama, p. k. r. kumar, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2gzw.pdb.
transcription 12-may-06 2gzw
Title: crystal structure of the e.coli crp-camp complex
Author: t. s. kumarevel, t. tanaka, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: camp binding protein, transcription, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2h09.pdb.
transcription 14-may-06 2h09
Title: crystal structure of diphtheria toxin repressor like protein from e. coli
Author: t. s. kumarevel, t. tanaka, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: diphtheria toxin, manganese transport, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2h0a.pdb.
transcription 14-may-06 2h0a
Title: crystal structure of probable transcription regulator from thermus thermophilus
Author: t. s. kumarevel, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: regulator, repressor, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2h3n.pdb.
immune system 22-may-06 2h3n
Title: crystal structure of a surrogate light chain (lambda5 and vpreb) homodimer
Author: a. j. bankovich, k. c. garcia
Keywords: v- and c-type immunoglobulin fold
- 2h5e.pdb.
translation 26-may-06 2h5e
Title: crystal structure of e.coli polypeptide release factor rf3
Author: h. w. song, z. h. zhou
- 2h6v.pdb.
luminescent protein 01-jun-06 2h6v
Na
Title: spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to gfp proteins- e2(gfp) apo form
Author: g. garau
Keywords: green fluorescent protein, variant, gfp, e2, bioluminescence, photoactive protein, fluorescent
- 2h6x.pdb.
electron transport 01-jun-06 2h6x
Title: crystal structure of thioredoxin wild type in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h6y.pdb.
electron transport 01-jun-06 2h6y
Title: crystal structure of thioredoxin mutant e48d in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h6z.pdb.
electron transport 01-jun-06 2h6z
Title: crystal structure of thioredoxin mutant e44d in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h70.pdb.
electron transport 01-jun-06 2h70
Title: crystal structure of thioredoxin mutant d9e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h71.pdb.
electron transport 01-jun-06 2h71
Title: crystal structure of thioredoxin mutant d47e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h72.pdb.
electron transport 01-jun-06 2h72
Title: crystal structure of thioredoxin mutant e85d in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h73.pdb.
electron transport 01-jun-06 2h73
Title: crystal structure of thioredoxin mutant d43e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h74.pdb.
electron transport 01-jun-06 2h74
Title: crystal structure of thioredoxin mutant d2e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h75.pdb.
electron transport 01-jun-06 2h75
Title: crystal structure of thioredoxin mutant d13e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h76.pdb.
lyase 01-jun-06 2h76
Title: crystal structure of thioredoxin mutant d10e in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2h80.pdb.
lipid binding protein 06-jun-06 2h80
(NMR, 20 structures)
Title: nmr structures of sam domain of deleted in liver cancer 2 (dlc2)
Author: h. y. li, k. l. fung, d. y. jin, s. s. chung, b. c. ko, h. z. sun
- 2him.pdb.
hydrolase 29-jun-06 2him
Title: crystal structure and allosteric regulation of the cytoplasmic escherichia coli l-asparaginase i
Author: m. -k. yun, a. nourse, s. w. white, c. o. rock, r. j. heath
- 2hna.pdb.
electron transport 12-jul-06 2hna
(NMR, 21 structures)
Title: solution structure of a bacterial apo-flavodoxin
Author: y. hu, c. jin
Keywords: flavodoxin fold
- 2hnb.pdb.
electron transport 12-jul-06 2hnb
(NMR, 21 structures)
Title: solution structure of a bacterial holo-flavodoxin
Author: y. hu, c. jin
Keywords: flavodoxin fold
- 2hu5.pdb.
hydrolase 26-jul-06 2hu5
Title: binding of inhibitors by acylaminoacyl-peptidase
Author: a. l. kiss, b. hornung, k. radi, z. gengeliczki, b. sztaray, v. harmat, l. polgar
Keywords: beta-propeller, enzyme-inhibitor complex
- 2hu7.pdb.
hydrolase 26-jul-06 2hu7
Title: binding of inhibitors by acylaminoacyl peptidase
Author: a. l. kiss, b. hornung, k. radi, z. gengeliczki, b. sztaray, v. harmat, l. polgar
Keywords: beta-propeller, enzyme-inhibitor complex
- 2hu8.pdb.
hydrolase 26-jul-06 2hu8
Title: binding of inhibitors by acylaminoacyl peptidase
Author: a. l. kiss, b. hornung, k. radi, z. gengeliczki, b. sztaray, v. harmat, l. polgar
Keywords: beta-propeller, enzyme-inhibitor complex
- 2ibp.pdb.
transferase 11-sep-06 2ibp
Mg
Title: crystal structure of citrate synthase from pyrobaculum aerophilum
Author: d. r. boutz, t. o. yeates, d. cascio
Keywords: homodimer, citrate synthase, thermophilic, catenane
- 2ijo.pdb.
hydrolase/hydrolase inhibitor 29-sep-06 2ijo
Title: crystal structure of the west nile virus ns2b-ns3 protease complexed with bovine pancreatic trypsin inhibitor
Author: a. e. aleshin, s. a. shiryaev, a. y. strongin, r. c. liddington
Keywords: protease, aprotinin, bpti, ns2b, ns3, flavivirus, serine protease
- 2itc.pdb.
membrane protein 19-oct-06 2itc
Na
Title: potassium channel kcsa-fab complex in sodium chloride
Author: s. w. lockless, m. zhou, r. mackinnon
Keywords: transmembrane, ionic channel, ion transport, 3d-structure, k channel, protein-antibody fab complex
- 2itd.pdb.
membrane protein 19-oct-06 2itd
Ba
Title: potassium channel kcsa-fab complex in barium chloride
Author: s. w. lockless, m. zhou, r. mackinnon
Keywords: transmembrane, ionic channel, ion transport, 3d-structure, k channel, protein-antibody fab complex
- 2iu0.pdb.
hydrolase 26-may-06 2iu0
K
Title: crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase
Author: l. xu, y. chong, i. hwang, a. d'onofrio, k. amore, g. p. beardsley, c. li, a. j. olson, d. l. boger, i. a. wilson
Keywords: transition state analogue, atic, impch, hydrolase, inhibitor, transferase, structure-base, purine biosynthesis
- 2iu3.pdb.
hydrolase 27-may-06 2iu3
K
Title: crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase
Author: l. xu, y. chong, i. hwang, a. d'onofrio, k. amore, g. p. beardsley, c. li, a. j. olson, d. l. boger, i. a. wilson
Keywords: transition state analogue, atic, impch, hydrolase, inhibitor, transferase, structure-base, purine biosynthesis
- 2j1d.pdb.
protein binding 10-aug-06 2j1d
Title: crystallization of hdaam1 c-terminal fragment
Author: j. lu, w. meng, f. poy, m. j. eck
Keywords: coiled coil, actin assembly, formin, fh2 domain, protein binding
- 2j1m.pdb.
oxidoreductase 14-aug-06 2j1m
Zn Fe
Title: p450 bm3 heme domain in complex with dmso
Author: j. kuper, w. tuck-seng, d. roccatano, m. wilmanns, u. schwaneberg
Keywords: dmso-inhibition, p450, iron, heme, organic solvent, flavoprotein, monooxygenase, metal-binding, membrane
- 2j4s.pdb.
oxidoreductase 05-sep-06 2j4s
Zn Fe
Title: p450 bm3 heme domain in complex with dmso
Author: j. kuper, w. tuck-seng, d. roccatano, m. wilmanns, u. schwaneberg
Keywords: monooxygenase, metal-binding, p450, iron, heme, oxidoreductase, dmso-inhibition, organic solvent
- 2jcz.pdb.
oxidoreductase 04-jan-07 2jcz
Mn
Title: x-ray structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with fosmidomycin, manganese and nadph
Author: l. m. henriksson, t. unge, t. a. jones, s. l. mowbray
Keywords: isoprene biosynthesis, 1-deoxy-d-xylulose 5-phosphate reductoisomerase, nadp, rv2870c, metal-binding, oxidoreductase
- 2jdi.pdb.
hydrolase 09-jan-07 2jdi
Mg
Title: ground state structure of f1-atpase from bovine heart mitochondria (bovine f1-atpase crystallised in the absence of azide)
Author: m. w. bowler, m. g. montgomery, a. g. w. leslie, j. e. walker
Keywords: atp phosphorylase, azide, p-loop, bovine, f1-atpase, hydrolase, atp phosphorylase (h+ transporting), atp-binding, atp synthase, mitochondria, atp synthesis
- 2jeu.pdb.
transcription 23-jan-07 2jeu
Title: transcription activator structure reveals redox control of a replication initiation reaction
Author: c. m. sanders, d. sizov, p. r. seavers, m. ortiz-lombardia, a. a. antson
Keywords: activator, repressor, dna-binding
- 2jex.pdb.
transcription 24-jan-07 2jex
Title: transcription activator structure reveals redox control of a replication initiation reaction
Author: c. m. sanders, d. sizov, p. r. seavers, m. ortiz-lombardia, a. a. antson
Keywords: activator, repressor, dna-binding
- 2jf2.pdb.
transferase 25-jan-07 2jf2
Title: nucleotide substrate binding by udp-n-acetylglucosamine acyltransferase
Author: v. ulaganathan, l. buetow, w. n. hunter
Keywords: transferase, acyltransferase, lipid synthesis
- 2jf3.pdb.
transferase 25-jan-07 2jf3
Title: nucleotide substrate binding by udp-n-acetylglucosamine acyltransferase
Author: v. ulaganathan, l. buetow, w. n. hunter
Keywords: transferase, acyltransferase, lipid synthesis
- 2jff.pdb.
ligase 01-feb-07 2jff
Title: crystal structure of murd ligase in complex with d-glu containing sulfonamide inhibitor
Author: m. kotnik, j. humljan, c. contreras-martel, m. oblak, k. kristan, m. herve, d. blanot, u. urleb, s. gobec, a. dessen, t. solmajer
Keywords: peptidoglycan synthesis, ligase, cell wall, cell shape, cell cycle, nucleotide-binding, sulfonamide inhibitor, murd ligase, atp-binding, cell division
- 2jfg.pdb.
ligase 01-feb-07 2jfg
Title: crystal structure of murd ligase in complex with uma and adp
Author: m. kotnik, j. humljan, c. contreras-martel, m. oblak, k. kristan, m. herve, d. blanot, u. urleb, s. gobec, a. dessen, t. solmajer
Keywords: peptidoglycan synthesis, murd ligase, atp-binding, cell division, uma, adp, ligase, cell wall, cell shape, cell cycle
- 2jfh.pdb.
ligase 01-feb-07 2jfh
Title: crystal structure of murd ligase in complex with l-glu containing sulfonamide inhibitor
Author: m. kotnik, j. humljan, c. contreras-martel, m. oblak, k. kristan, m. herve, d. blanot, u. urleb, s. gobec, a. dessen, t. solmajer
Keywords: peptidoglycan synthesis, ligase, cell wall, cell shape, cell cycle, nucleotide-binding, sulfonamide inhibitor, murd ligase, atp-binding, cell division
- 2jgr.pdb.
transferase 14-feb-07 2jgr
Se
Title: crystal structure of yegs in complex with adp
Author: m. a. h. bakali, m. d. herman, k. a. johnson, a. a. kelly, a. wieslander, b. m. hallberg, p. nordlund
Keywords: transferase, lipid kinase, pyrrophosphate, hypothetical protein
- 2jn9.pdb.
structural genomics, unknown function 29-dec-06 2jn9
(NMR, 10 structures)
Title: nmr solution structure of ykvr protein from bacillus subtilis: nesg target sr358
Author: s. v. t. gurla, j. m. aramini, k. chi ho, k. cunningham, l. -c. ma, r. xiao, m. c. baran, t. b. acton, j. liu, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: sr358, bacillus subtilis, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2jo8.pdb.
transferase 26-feb-07 2jo8
(NMR, 20 structures)
Title: solution structure of c-terminal domain of human mammalian sterile 20-like kinase 1 (mst1)
Author: e. hwang, k. -s. ryu, k. paakkonen, p. guntert, h. -k. cheong, d. -s. lim, j. o. lee, y. h. jeon, c. cheong
Keywords: c-terminal domain, human mammalian sterile 20-like kinase 1, dimer
- 2joy.pdb.
structural genomics, unknown function 10-apr-07 2joy
(NMR, 20 structures)
Title: nmr structure of 50s ribosomal protein l14e from sulfolobus solfataricus: northeast structural genomics consortium target ssr105
Author: k. singarapu, y. wu, a. yee, a. semesi, c. arrowsmith, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: protein nmr, solution structure, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2joz.pdb.
lipid binding protein 10-apr-07 2joz
(NMR, 20 structures)
Title: solution nmr structure of protein yxef, northeast structural genomics consortium target sr500a
Author: y. wu, g. liu, q. zhang, s. bhatnagar, c. chen, c. nwosu, r. xiao, k. cunningham, j. locke, l. ma, g. swapna, m. baran, t. acton, g. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: structure, gft, nesg, lipoprotein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2jp2.pdb.
signaling protein 18-apr-07 2jp2
(NMR, 20 structures)
Title: solution structure and resonance assignment of the n- terminal evh1 domain from the human spred2 protein (sprouty-related protein with evh1 domain isoform 2)
Author: m. fossi, j. zimmermann, t. jarchau, a. lemak, u. walter, j. wiegelt, m. sundstrom, c. arrowsmith, a. edwards, h. oschkinat, l. j. ball, structural genomics consortium (sgc)
Keywords: solution structure, structural genomics, structural genomics consortium, sgc
- 2jpe.pdb.
transcription 07-may-07 2jpe
(NMR, 20 structures)
Title: fha domain of nipp1
Author: h. kumeta, k. ogura, y. fujioka, n. tanuma, k. kikuchi, f. inagaki
Keywords: nipp1, mrna splicing
- 2nlj.pdb.
membrane protein 20-oct-06 2nlj
K
Title: potassium channel kcsa(m96v)-fab complex in kcl
Author: s. w. lockless, m. zhou, r. mackinnon
Keywords: transmembrane, ionic channel, ion transport, 3d-structure, k channel, protein-antibody fab complex
- 2nqp.pdb.
isomerase/rna 31-oct-06 2nqp
K
Title: crystal structure of pseudoudirinde synthase trua in complex with leucyl trna
Author: s. hur, r. m. stroud
Keywords: anticodon stem loop, trna, multisite specificity
- 2nr0.pdb.
isomerase/rna 01-nov-06 2nr0
Title: crystal structure of pseudoudirinde synthase trua in complex with leucyl trna
Author: s. hur, r. m. stroud
Keywords: anticodon stem loop, trna, multisite specificity
- 2nre.pdb.
isomerase/rna 01-nov-06 2nre
K
Title: crystal structure of pseudoudirinde synthase trua in complex with leucyl trna
Author: s. hur, r. m. stroud
Keywords: anticodon stem loop, trna, multisite specificity
- 2nuz.pdb.
structural protein 10-nov-06 2nuz
Title: crystal structure of alpha spectrin sh3 domain measured at room temperature
Author: v. agarwal, k. faelber, m. hologne, v. chevelkov, h. oschkinat, a. diehl, b. reif
Keywords: beta barrel, antiparallel beta sheet, room temperature
- 2nvc.pdb.
oxidoreductase 12-nov-06 2nvc
Title: human aldose reductase complexed with novel naphtho[1,2- d]isothiazole acetic acid derivative (3)
Author: h. steuber, a. heine, g. klebe
Keywords: protein-ligand complex, aldose reductase
- 2nvd.pdb.
oxidoreductase 12-nov-06 2nvd
Title: human aldose reductase complexed with novel naphtho[1,2- d]isothiazole acetic acid derivative (2)
Author: h. steuber, a. heine, g. klebe
Keywords: tim-barrel, protein-ligand complex
- 2nzi.pdb.
transferase 23-nov-06 2nzi
Title: crystal structure of domains a168-a170 from titin
Author: m. c. mrosek, d. labeit, s. labeit, o. mayans
Keywords: fniii-domain
- 2o0s.pdb.
de novo protein 28-nov-06 2o0s
(NMR, 9 structures)
Title: lps-bound structure of a designed peptide
Author: s. bhattacharjya
Keywords: peptide design
- 2o24.pdb.
luminescent protein 29-nov-06 2o24
Cl
Title: spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to gfp proteins: e2(gfp)-cl complex
Author: g. garau
Keywords: green fluorescent protein, variant, gfp, e2, bioluminescence, photoactive protein, fluorescent chloride, bromide, iodine, halogen
- 2o29.pdb.
luminescent protein 29-nov-06 2o29
Br
Title: spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to gfp proteins: e2(gfp)-br complex
Author: g. garau
Keywords: green fluorescent protein, variant, gfp, e2, bioluminescence, photoactive protein, fluorescent chloride, bromide, iodine, halogen
- 2o2b.pdb.
luminescent protein 29-nov-06 2o2b
I
Title: spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to gfp proteins: e2(gfp)-i complex
Author: g. garau
Keywords: green fluorescent protein, variant, gfp, e2, bioluminescence, photoactive protein, fluorescent chloride, bromide, iodine, halogen
- 2o4z.pdb.
lyase 05-dec-06 2o4z
Hg Zn
Title: crystal structure of the carbonic anhydrase ii complexed with hydroxysulfamide inhibitor
Author: c. temperini, j. y. winum, j. l. montero, a. scozzafava, c. t. supuran
Keywords: inhibitors, crystal structure
- 2o7o.pdb.
transcription regulator 11-dec-06 2o7o
Cl Mg
Title: crystal structure analysis of tetr(d) complex with doxycycline
Author: a. aleksandrov, j. proft, w. hinrichs
Keywords: metal coordination
- 2o9o.pdb.
signaling protein 14-dec-06 2o9o
Title: crystal structure of the buffalo secretory signalling glycoprotein at 2.8 a resolution
Author: a. s. ethayathulla, d. b. srivastava, j. kumar, s. sharma, p. kaur, t. p. singh
Keywords: tim barrel, crystal structure
- 2odu.pdb.
structural protein 27-dec-06 2odu
Title: crystal structure of a fragment of the plakin domain of plectin
Author: j. m. de pereda
Keywords: spectrin repeat, cytoskeleton, hemidesmosomes, epidermolysis bullosa
- 2odv.pdb.
structural protein 27-dec-06 2odv
Title: crystal structure of a fragment of the plakin domain of plectin, cys to ala mutant.
Author: j. m. de pereda
Keywords: spectrin repeat, cytoskeleton, hemidesmosomes, epidermolysis bullosa
- 2ofi.pdb.
3-methyladenine dna glycosylase i/dna 03-jan-07 2ofi
Zn Na Se
Title: crystal structure of 3-methyladenine dna glycosylase i (tag) bound to dna/3ma
Author: a. h. metz, t. hollis, b. f. eichman
Keywords: dna repair, glycosylase, base excision, helix-hairpin-helix
- 2ofk.pdb.
hydrolase 03-jan-07 2ofk
Zn
Title: crystal structure of 3-methyladenine dna glycosylase i (tag)
Author: a. h. metz, t. hollis, b. f. eichman
Keywords: dna repair, glycosylase, base excision, helix-hairpin-helix
- 2oga.pdb.
hydrolase 05-jan-07 2oga
Cl Na
Title: x-ray crystal structure of s. venezuelae desv in complex with ketimine intermediate
Author: h. m. holden, e. s. burgie
Keywords: desosamine, transaminase, deoxysugars, antibiotics
- 2oge.pdb.
transferase 05-jan-07 2oge
Cl Na
Title: x-ray structure of s. venezuelae desv in its internal aldimine form
Author: h. m. holden, e. s. burgie
Keywords: desosamine, transaminase, deoxysugars, macrolide antibiotics
- 2ol2.pdb.
hydrolase inhibitor 18-jan-07 2ol2
Title: high resolution structure of native pci in space group p21
Author: w. li, j. a. huntington
- 2op4.pdb.
immune system 26-jan-07 2op4
Title: crystal structure of quorum-quenching antibody 1g9
Author: r. n. kirchdoerfer, e. w. debler, i. a. wilson
Keywords: antibody, fab, induced fit, quorum sensing, homoserine lactone
- 2orf.pdb.
deoxyribonucleic acid 02-feb-07 2orf
Br Na
Title: directing macromolecular conformation through halogen bonds
Author: a. r. voth, f. a. hays, p. s. ho
Keywords: halogen bond
- 2org.pdb.
deoxyribonucleic acid 02-feb-07 2org
Br
Title: directing macromolecular conformation through halogen bonds
Author: a. r. voth, f. a. hays, p. s. ho
Keywords: halogen bond
- 2orh.pdb.
deoxyribonucleic acid 02-feb-07 2orh
Na
Title: directing macromolecular conformation through halogen bonds
Author: a. r. voth, f. a. hays, p. s. ho
Keywords: halogen bond
- 2ost.pdb.
hydrolase/dna 06-feb-07 2ost
Ca
Title: the structure of a bacterial homing endonuclease : i- ssp6803i
Author: l. zhao, r. p. bonocora, d. a. shub, b. l. stoddard
Keywords: restriction enzyme fold,pd-(d/e)-xk motif, homing endonuclease, group i intron
- 2osv.pdb.
metal transport 06-feb-07 2osv
Zn
Title: crystal structure of znua from e. coli
Author: h. li, g. jogl
- 2ow8.pdb.
ribosome 15-feb-07 2ow8
Title: crystal structure of a 70s ribosome-trna complex reveals functional interactions and rearrangements. this file, 2ow8, contains the 30s ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit is in the file 1vsa.
Author: a. korostelev, s. trakhanov, m. laurberg, h. f. noller
Keywords: ribosome, functional complex, trna, e site, p site, peptidyl transferase center
- 2owo.pdb.
ligase/dna 16-feb-07 2owo
Zn
Title: last stop on the road to repair: structure of e.coli dna ligase bound to nicked dna-adenylate
Author: s. shuman, j. nandakumar, p. a. nair
Keywords: ligase, protein/dna complex
- 2oxt.pdb.
viral protein 21-feb-07 2oxt
Title: crystal structure of meaban virus nucleoside-2'-o- methyltransferase
Author: e. mastrangelo, m. milani, m. bollati, m. bolognesi
Keywords: nucleoside-2'-o-methyltransferase, viral enzyme, rna capping, s-adenosyl-l-methionine
- 2oyh.pdb.
blood clotting 22-feb-07 2oyh
Ca
Title: crystal structure of fragment d of gammad298,301a fibrinogen with the peptide ligand gly-his-arg-pro-amide
Author: m. s. kostelansky, o. v. gorkun, s. t. lord
Keywords: fibrinogen, fibrinogen fragment d, variant fibrinogen, gammad298,301a fibrinogen
- 2oyi.pdb.
blood clotting 22-feb-07 2oyi
Ca
Title: crystal structure of fragment d of gammad298,301a fibrinogen with the peptide ligand gly-pro-arg-pro-amide
Author: m. s. kostelansky, o. v. gorkun, s. t. lord
Keywords: fibrinogen, fibrinogen fragment d, variant fibrinogen, gammad298,301a fibrinogen
- 2p1h.pdb.
apoptosis 05-mar-07 2p1h
Zn
Title: rapid folding and unfolding of apaf-1 card
Author: s. l. milam, n. i. nicely, b. feeney, c. mattos, a. c. clark
Keywords: folding, unfolding
- 2p2d.pdb.
transferase 07-mar-07 2p2d
Title: crystal structure and allosteric regulation of the cytoplasmic escherichia coli l-asparaginase i
Author: m. -k. yun, a. nourse, s. w. white, c. o. rock, r. j. heath
- 2p2n.pdb.
transferase 07-mar-07 2p2n
Cl
Title: crystal structure and allosteric regulation of the cytoplasmic escherichia coli l-asparaginase i
Author: m. -k. yun, a. nourse, s. w. white, c. o. rock, r. j. heath
- 2p2o.pdb.
transferase 07-mar-07 2p2o
Title: crystal structure of maltose transacetylase from geobacillus kaustophilus p2(1) crystal form
Author: z. j. liu, y. li, l. chen, j. zhu, j. p. rose, a. ebihara, s. yokoyama, b. c. wang, southeast collaboratory for structural genomics (secsg), riken structural genomics/proteomics initiative (rsgi)
Keywords: riken genomics sciences center, riken structural genomics/proteomics initiative, rsgi
- 2p3n.pdb.
hydrolase 09-mar-07 2p3n
Mg
Title: thermotoga maritima impase tm1415
Author: k. a. stieglitz, m. f. roberts, w. li, b. stec
Keywords: inositol
- 2p3r.pdb.
transferase 09-mar-07 2p3r
Title: crystal structure of a hyperactive escherichia coli glycerol kinase mutant gly230->asp obtained using microfluidic crystallization devices
Author: m. j. anderson, b. delabarre, a. t. brunger, s. r. quake
Keywords: glycerol metabolism, allosteric regulation, microfluidics, crystal structure
- 2p3v.pdb.
hydrolase 09-mar-07 2p3v
Title: thermotoga maritima impase tm1415
Author: k. a. stieglitz, m. f. roberts, w. li, b. stec
Keywords: phosphatase, asymmetric tetramer
- 2p4h.pdb.
plant protein 12-mar-07 2p4h
Title: crystal structure of vestitone reductase from alfalfa (medicago sativa l.)
Author: x. wang, h. shao, r. a. dixon
Keywords: crystal structure, isoflavonoid
- 2p51.pdb.
hydrolase, gene regulation 14-mar-07 2p51
Mg
Title: crystal structure of the s. pombe pop2p deadenylation subunit
Author: a. thyssen jonstrup, k. r. andersen, l. b. van, d. e. brodersen
- 2p5t.pdb.
transcription regulator 16-mar-07 2p5t
Title: molecular and structural characterization of the pezat chromosomal toxin-antitoxin system of the human pathogen streptococcus pneumoniae
Author: b. loll, a. meinhart
Keywords: phosphoryltransferase, helix-turn-helix motif
- 2p6v.pdb.
transcription 19-mar-07 2p6v
Title: structure of tafh domain of the human taf4 subunit of tfiid
Author: x. wang, d. m. truckses, s. takada, t. matsumura, n. tanese, r. h. jacobson
- 2p8l.pdb.
viral protein 22-mar-07 2p8l
Title: crystal structure of the hiv-1 cross neutralizing monoclonal antibody 2f5 in complex with gp41 peptide elleldkwaslwn
Author: j. p. julien, s. bryson, e. f. pai
Keywords: hiv-1, gp41 epitope
- 2p8m.pdb.
viral protein 22-mar-07 2p8m
Title: crystal structure of the hiv-1 cross neutralizing monoclonal antibody 2f5 in complex with gp41 peptide elleldkwaslwn in new crystal form
Author: j. p. julien, s. bryson, e. f. pai
Keywords: hiv-1, gp41 epitope
- 2p8p.pdb.
viral protein 22-mar-07 2p8p
Title: crystal structure of the hiv-1 cross neutralizing monoclonal antibody 2f5 in complex with gp41 peptide leldkwaslw[n-ac]
Author: j. p. julien, s. bryson, m. x. li, e. f. pai
Keywords: hiv-1, gp41 epitope
- 2p8w.pdb.
translation 23-mar-07 2p8w
(cryo-electron microscopy)
Title: fitted structure of eef2 in the 80s:eef2:gdpnp cryo-em reconstruction
Author: d. j. taylor, j. nilsson, a. r. merrill, g. r. andersen, p. nissen, j. frank
Keywords: translocation, gtpase, 80s ribosome
- 2p8x.pdb.
translation 23-mar-07 2p8x
(cryo-electron microscopy)
Title: fitted structure of adpr-eef2 in the 80s:adpr-eef2:gdpnp cryo-em reconstruction
Author: d. j. taylor, j. nilsson, a. r. merrill, g. r. andersen, p. nissen, j. frank
Keywords: translocation, gtpase, 80s ribosome
- 2p8y.pdb.
translation 23-mar-07 2p8y
(cryo-electron microscopy)
Title: fitted structure of adpr-eef2 in the 80s:adpr- eef2:gdp:sordarin cryo-em reconstruction
Author: d. j. taylor, j. nilsson, a. r. merrill, g. r. andersen, p. nissen, j. frank
Keywords: translocation, gtpase, 80s ribosome
- 2p8z.pdb.
translation 23-mar-07 2p8z
(cryo-electron microscopy)
Title: fitted structure of adpr-eef2 in the 80s:adpr- eef2:gdpnp:sordarin cryo-em reconstruction
Author: d. j. taylor, j. nilsson, a. r. merrill, g. r. andersen, p. nissen, j. frank
Keywords: translocation, gtpase, 80s ribosome
- 2pa5.pdb.
hydrolase 27-mar-07 2pa5
Cl
Title: crystal structure of human protein tyrosine phosphatase ptpn9
Author: e. ugochukwu, a. barr, a. c. w. pike, p. savitsky, e. papagrigoriou, a. turnbull, j. uppenberg, g. bunkoczi, e. salah, s. das, f. von delft, m. sundstrom, c. h. arrowsmith, j. weigelt, a. edwards, s. knapp, structural genomics consortium (sgc)
Keywords: meg2, ptpn9, structural genomics, structural genomics, structural genomics consortium, sgc
- 2pfn.pdb.
transferase, lyase/dna 05-apr-07 2pfn
Mg Na
Title: na in the active site of dna polymerase lambda
Author: m. garcia-diaz, k. bebenek, j. m. krahn, l. c. pedersen, t. a. kunkel
Keywords: dna repair, phosphoryl transfer reaction, manganese
- 2pfo.pdb.
transferase, lyase/dna 05-apr-07 2pfo
Mg Mn Na
Title: dna polymerase lambda in complex with dna and dupnpp
Author: m. garcia-diaz, k. bebenek, j. m. krahn, l. c. pedersen, t. a. kunkel
Keywords: dna repair, phosphoryl transfer reaction, manganese
- 2pfp.pdb.
transferase, lyase/dna 05-apr-07 2pfp
Mg Na
Title: dna polymerase lambda in complex with dna and dctp
Author: m. garcia-diaz, k. bebenek, j. m. krahn, l. c. pedersen, t. a. kunkel
Keywords: dna repair, phosphoryl transfer reaction, manganese
- 2pfq.pdb.
transferase, lyase/dna 05-apr-07 2pfq
Mg Mn Na
Title: manganese promotes catalysis in a dna polymerase lambda-dna crystal
Author: m. garcia-diaz, k. bebenek, j. m. krahn, l. c. pedersen, t. a. kunkel
Keywords: dna repair, phosphoryl transfer reaction, manganese
- 2pfr.pdb.
transferase 05-apr-07 2pfr
U
Title: human n-acetyltransferase 2
Author: w. tempel, h. wu, l. dombrovski, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, d. m. grant, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: arylamide acetylase 2, structural genomics consortium, sgc
- 2ph5.pdb.
transferase 10-apr-07 2ph5
Se
Title: crystal structure of the homospermidine synthase hss from legionella pneumophila in complex with nad, northeast structural genomics target lgr54
Author: f. forouhar, m. hussain, j. seetharaman, y. fang, h. janjua, r. xiao, k. cunningham, l-c. ma, l. owens, j. liu, m. c. baran, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2phn.pdb.
ligase 11-apr-07 2phn
Mn
Title: crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Author: b. nocek, e. evdokimova, m. kudritska, a. edwards, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: coenzyme f420 biosynthesis, amide bond forming enzyme, metal dependent, new fold, gdp binding, mcsg, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics
- 2pjs.pdb.
structural genomics, unknown function 16-apr-07 2pjs
Zn Se
Title: crystal structure of atu1953, protein of unknown function
Author: c. chang, t. skarina, o. onopriyenko, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2pkg.pdb.
hydrolase regulator/viral protein 17-apr-07 2pkg
Zn
Title: structure of a complex between the a subunit of protein phosphatase 2a and the small t antigen of sv40
Author: p. d. jeffrey, y. shi
Keywords: small t antigen, sv40, regulation
- 2pkh.pdb.
dna binding protein 17-apr-07 2pkh
Se
Title: structural genomics, the crystal structure of the c- terminal domain of histidine utilization repressor from pseudomonas syringae pv. tomato str. dc3000
Author: k. tan, m. zhou, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: histidine utilization repressor, pseudomonas syringae pv. tomato str. dc3000, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2pof.pdb.
hydrolase 26-apr-07 2pof
Se
Title: crystal structure of cdp-diacylglycerol pyrophosphatase
Author: m. madegowda, s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: 10285a, pfam02611, psi-2, phospholipid biosynthesis, structural genomics, protein structure initiative, new york structural genomix research consortium
- 2poz.pdb.
structural genomics, unknown function 27-apr-07 2poz
Se
Title: crystal structure of a putative dehydratase from mesorhizobium loti
Author: r. sugadev, s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: putative dehydratase, octamer, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2ppv.pdb.
structural genomics, unknown function 30-apr-07 2ppv
Se
Title: crystal structure of uncharacterized protein (np_764104.1) from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pq7.pdb.
hydrolase 01-may-07 2pq7
Cl Fe Se
Title: crystal structure of predicted hd superfamily hydrolase (104161995) from uncultured thermotogales bacterium at 1.45 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hd domain, predicted hd superfamily hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pq8.pdb.
transferase 01-may-07 2pq8
Zn U
Title: myst histone acetyltransferase 1
Author: w. tempel, h. wu, l. dombrovski, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: mof, histone acetyltransferase, structural genomics, structural genomics consortium, sgc
- 2pqf.pdb.
transferase 02-may-07 2pqf
Se
Title: human poly(adp-ribose) polymerase 12, catalytic fragment in complex with an inhibitor 3-aminobenzoic acid
Author: t. karlberg, l. lehtio, c. h. arrowsmith, h. berglund, r. d. busam, r. collins, l. g. dahlgren, a. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, m. hogbom, i. johansson, a. kallas, t. kotenyova, m. moche, p. nordlund, t. nyman, c. persson, j. sagemark, m. sundstrom, a. g. thorsell, s. van den berg, j. weigelt, l. holmberg-schiavone, structural genomics consortium (sgc)
Keywords: catalytic fragment, structural genomics, structural genomics consortium, sgc
- 2pqo.pdb.
hydrolase 02-may-07 2pqo
K Zn
Title: crystal structure of human hdac7 in complex with saha
Author: j. min, a. schuetz, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2pqp.pdb.
hydrolase 02-may-07 2pqp
K Zn
Title: crystal structure of human hdac7 in complex with trichostatin a (tsa)
Author: j. min, a. schuetz, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2pqt.pdb.
transferase 02-may-07 2pqt
Cl U
Title: human n-acetyltransferase 1
Author: w. tempel, h. wu, l. dombrovski, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, d. m. grant, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: arylamide acetylase 1, structural genomics consortium, sgc, bromoacetanilide, covalent, inhibitor
- 2pr1.pdb.
transferase 03-may-07 2pr1
Co
Title: crystal structure of the bacillus subtilis n- acetyltransferase ylbp protein in complex with coenzyme-a
Author: g. minasov, l. shuvalova, o. kiryukhina, i. i. vorontsov, f. r. collart, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: n-acetyltransferase, yibp protein, coenzyme a, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2pr4.pdb.
viral protein 03-may-07 2pr4
Title: crystal structure of fab' from the hiv-1 neutralizing antibody 2f5
Author: r. c. hynes, s. bryson, j. p. julien, a. cunningham, e. f. pai
Keywords: gp41, hiv
- 2pr7.pdb.
hydrolase 03-may-07 2pr7
Ca Se
Title: crystal structure of uncharacterized protein (np_599989.1) from corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2psb.pdb.
structural genomics, unknown function 04-may-07 2psb
Se
Title: crystal structure of yerb protein from bacillus subtilis. northeast structural genomics target sr586
Author: j. seetharaman, y. chen, f. forouhar, d. wang, y. fang, k. cunningham, l-c. ma, r. xia, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2pso.pdb.
structural genomics, unknown function 07-may-07 2pso
Title: human stard13 (dlc2) lipid transfer and protein localization domain
Author: l. lehtio, r. busam, c. h. arrowsmith, h. berglund, r. collins, l. g. dahlgren, a. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg-schiavone, i. johansson, a. kallas, t. karlberg, t. kotenyova, m. moche, p. nordlund, t. nyman, d. ogg, j. sagemark, p. stenmark, m. sundstrom, a. g. thorsell, s. van den berg, j. weigelt, m. welin, c. persson, structural genomics consortium (sgc)
Keywords: lipid binding, helix swapping, structural genomics, structural genomics consortium, sgc
- 2ptf.pdb.
structural genomics, unknown function 08-may-07 2ptf
Title: crystal structure of protein mth_863 from methanobacterium thermoautotrophicum bound to fmn
Author: j. b. bonanno, m. rutter, k. t. bain, m. iizuka, s. ozyurt, d. smith, s. wasserman, m. j. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2uu9.pdb.
ribosome 02-mar-07 2uu9
Mg K Zn
Title: structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a gug-codon in the a-site and paromomycin.
Author: a. weixlbaumer, f. v. murphy, a. dziergowska, a. malkiewicz, f. a. p. vendeix, p. f. agris, v. ramakrishnan
Keywords: rrna-binding, metal-binding, zinc-finger, translation, coiled coil, paromomycin, trna, zinc, mrna, cmo5u, ribosome, rna-binding, modifiactions, ribosomal protein, ribonucleoprotein
- 2uua.pdb.
ribosome 01-mar-07 2uua
Mg K Zn
Title: structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guc-codon in the a-site and paromomycin.
Author: a. weixlbaumer, f. v. murphy, a. dziergowska, a. malkiewicz, f. a. p. vendeix, p. f. agris, v. ramakrishnan
Keywords: rrna-binding, metal-binding, zinc-finger, translation, coiled coil, paromomycin, trna, zinc, mrna, cmo5u, ribosome, rna-binding, modifiactions, ribosomal protein, ribonucleoprotein
- 2uub.pdb.
ribosome 01-mar-07 2uub
Mg K Zn
Title: structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guu-codon in the a-site and paromomycin.
Author: a. weixlbaumer, f. v. murphy, a. dziergowska, a. malkiewicz, f. a. p. vendeix, p. f. agris, v. ramakrishnan
Keywords: rrna-binding, metal-binding, zinc-finger, translation, coiled coil, paromomycin, trna, zinc, mrna, cmo5u, ribosome, rna-binding, modifications, ribosomal protein, ribonucleoprotein
- 2uwj.pdb.
chaperone 22-mar-07 2uwj
Ni
Title: structure of the heterotrimeric complex which regulates type iii secretion needle formation
Author: m. quinaud, s. ple, v. job, c. contreras-martel, j. p. simorre, i. attree, a. dessen
Keywords: chaperones, coiled coil, needle formation, type iii secretion, bacterial pathogenicity, chaperone
- 2uz9.pdb.
hydrolase 26-apr-07 2uz9
Zn
Title: human guanine deaminase (guad) in complex with zinc and its product xanthine.
Author: m. moche, m. welin, c. arrowsmith, h. berglund, r. busam, r. collins, l. g. dahlgren, a. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg-schiavone, i. johansson, a. kallas, t. karlberg, t. kotenyova, l. lehtio, t. nyman, d. ogg, c. persson, j. sagemark, p. stenmark, m. sundstrom, a. g. thorsell, s. van-den-berg, j. weigelt, p. nordlund, structural genomics consortium (sgc)
Keywords: hydrolase, purine metabolism, guanine aminohydrolase
- 2yw9.pdb.
oxidoreductase 20-apr-07 2yw9
Title: crystal structure of tt0143 from thermus thermophilus hb8
Author: m. miyano, h. ago
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