Recent PDB releases or updates: week of 27 April 2007
- 1li5.pdb.
ligase 17-apr-02 1li5
Zn
Title: crystal structure of cysteinyl-trna synthetase
Author: k. j. newberry, y. -m. hou, j. j. perona
Keywords: cysteine, e.coli
- 1rfl.pdb.
unknown function 10-nov-03 1rfl
(NMR, 20 structures)
Title: nmr data driven structural model of g-domain of mnme protein
Author: d. monleon, v. esteve, m. martinez-vicente, l. yim, m. e. armengod, b. celda
Keywords: alpha/beta
- 1s12.pdb.
structural genomics, unknown function 05-jan-04 1s12
Title: crystal structure of tm1457
Author: d. h. shin, y. lou, j. jancarik, h. yokota, r. kim, s. -h. kim, berkeley structural genomics center (bsgc)
Keywords: structural genomics, hypothetical protein, psi, berkeley structural genomics center, bsgc, protein structure initiative, psi, protein structure initiative
- 1tq1.pdb.
structural genomics, unknown function 16-jun-04 1tq1
(NMR, 5 structures)
Title: solution structure of at5g66040, a putative protein from arabidosis thaliana
Author: c. c. cornilescu, g. cornilescu, s. singh, m. s. lee, e. m. tyler, m. n. shahan, d. vinarov, j. l. markley, center for eukaryotic structural genomics (cesg)
Keywords: cesg, structural genomics, psi, protein structure initiative, center for eukaryotic structural genomics
- 1uuz.pdb.
lysozyme/inhibitor complex 12-jan-04 1uuz
Title: ivy:a new family of protein
Author: c. abergel, f. lembo, d. byrne, c. maza, j. m. claverie
Keywords: ivy, type-c lysozyme inhibitor, lysozyme, hydrolase, glycosidase
- 1vsn.pdb.
hydrolase 19-mar-07 1vsn
F
Title: crystal structure of a potent small molecule inhibitor bound to cathepsin k
Author: m. mcgrath
Keywords: structure-guided drug design, proteae
- 1zg3.pdb.
plant protein, transferase 20-apr-05 1zg3
Title: crystal structure of the isoflavanone 4'-o- methyltransferase complexed with sah and 2,7,4'- trihydroxyisoflavanone
Author: c. -j. liu, b. e. deavours, s. richard, j. -l. ferrer, r. a. dixon, j. p. noel
Keywords: isoflavanone 4'-o-methyltransferase
- 1zga.pdb.
plant protein, transferase 20-apr-05 1zga
Title: crystal structure of isoflavanone 4'-o-methyltransferase complexed with (+)-6a-hydroxymaackiain
Author: c. -j. liu, b. e. deavours, s. richard, j. -l. ferrer, r. a. dixon, j. p. noel
Keywords: isoflavanone 4'-o-methyltransferase
- 1zgj.pdb.
plant protein, transferase 21-apr-05 1zgj
Title: crystal structure of isoflavanone 4'-o-methyltransferase complexed with (+)-pisatin
Author: c. -j. liu, b. e. deavours, s. richard, j. -l. ferrer, r. a. dixon, j. p. noel
Keywords: isoflavanone 4'-o-methyltransferase
- 1zhf.pdb.
plant protein, transferase 25-apr-05 1zhf
Title: crystal structure of selenomethionine substituted isoflavanone 4'-o-methyltransferase
Author: c. -j. liu, b. e. deavours, s. richard, j. -l. ferrer, r. a. dixon, j. p. noel
Keywords: rossman fold
- 1zom.pdb.
hydrolase 13-may-05 1zom
Br
Title: crystal structure of the catalytic domain of coagulation factor xi in complex with a peptidomimetic inhibitor
Author: j. lin, h. deng, l. jin, p. pandey, m. rynkiewicz, f. bibbins, s. cantin, j. quinn, s. magee, j. gorga
Keywords: inhibitor
- 1zxz.pdb.
hydrolase 09-jun-05 1zxz
Zn
Title: x-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a); crystals grown in peg-5000 mme as precipitant
Author: s. fieulaine, c. juillan-binard, a. serero, f. dardel, c. giglione, t. meinnel, j. -l. ferrer
- 1zy0.pdb.
hydrolase 09-jun-05 1zy0
Zn
Title: x-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a); crystals grown in peg-6000
Author: s. fieulaine, c. juillan-binard, a. serero, f. dardel, c. giglione, t. meinnel, j. -l. ferrer
- 1zy1.pdb.
hydrolase 09-jun-05 1zy1
Zn
Title: x-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a) in complex with met-ala-ser
Author: s. fieulaine, c. juillan-binard, a. serero, f. dardel, c. giglione, t. meinnel, j. -l. ferrer
- 2ab3.pdb.
rna binding protein 14-jul-05 2ab3
Zn
(NMR)
Title: solution structures and characterization of hiv rre iib rna targeting zinc finger proteins
Author: s. h. mishra, c. m. shelley, m. k. darby, m. w. germann
Keywords: beta beta alpha, rreiib-tr
- 2ab7.pdb.
rna binding protein 14-jul-05 2ab7
Zn
(NMR)
Title: solution structures and characterization of hiv rre iib rna targeting zinc finger proteins
Author: s. h. mishra, c. m. shelley, m. k. darby, m. w. germann
Keywords: beta beta alpha, rreiib-tr
- 2bbf.pdb.
transferase 17-oct-05 2bbf
Zn
Title: crystal structure of trna-guanine transglycosylase (tgt) from zymomonas mobilis in complex with 6-amino-3,7-dihydro- imidazo[4,5-g]quinazolin-8-one
Author: b. stengl, e. a. meyer, a. heine, r. brenk, f. diederich, g. klebe
- 2ddl.pdb.
toxin 30-jan-06 2ddl
(NMR, 20 structures)
Title: lei4p
Author: g. ferrat
- 2dem.pdb.
hydrolase/dna 13-feb-06 2dem
Fe
Title: crystal structure of uracil-dna glycosylase in complex with ap:a containing dna
Author: h. kosaka, n. nakagawa, r. masui, j. hoseki, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2dh5.pdb.
lyase 23-mar-06 2dh5
Title: crystal structure of e. coli holo-trpb
Author: k. nishio, y. morimoto, k. ogasahara, k. yutani, t. tsukihara
Keywords: beta-chain, plp
- 2dh6.pdb.
lyase 23-mar-06 2dh6
Title: crystal structure of e. coli apo-trpb
Author: k. nishio, y. morimoto, k. ogasahara, n. yasuoka, k. yutani, t. tsukihara
Keywords: beta-chain, plp
- 2dhs.pdb.
rna binding protein 25-mar-06 2dhs
(NMR, 7 structures)
Title: solution structure of nucleic acid binding protein cugbp1ab and its binding study with dna and rna
Author: y. l. xia, k. y. jun, q. zhu, x. g. han, h. zhang, l. timchenko, m. swanson, x. l. gao
Keywords: two helices packed against the beta sheet
- 2dk6.pdb.
signaling protein 06-apr-06 2dk6
(NMR, 20 structures)
Title: solution structure of wwe domain in poly (adp-ribose) polymerase family, member 11 (parp 11)
Author: f. he, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, wwe domain, parp11, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dk7.pdb.
transcription 06-apr-06 2dk7
(NMR, 20 structures)
Title: solution structure of ww domain in transcription elongation regulator 1
Author: f. he, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, ww domain, transcription elongation regulator 1, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dkj.pdb.
transferase 11-apr-06 2dkj
Title: crystal structure of t.th.hb8 serine hydroxymethyltransferase
Author: k. kai, m. goto, i. miyahara, k. hirotsu
- 2dky.pdb.
signaling protein 14-apr-06 2dky
(NMR, 20 structures)
Title: solution structure of the sam-domain of rho-gtpase- activating protein 7
Author: a. k. goroncy, m. sato, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: protein regulation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dlv.pdb.
signaling protein 20-apr-06 2dlv
(NMR, 20 structures)
Title: solution structure of the rgs domain of human regulator of g-protein signaling 18
Author: h. p. zhang, t. suetake, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: regulator of g-protein signaling 18, rgs18, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dm2.pdb.
protein binding 20-apr-06 2dm2
(NMR, 20 structures)
Title: solution structure of the first ig domain of human palladin
Author: t. nagashima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: kiaa0992, myopalladin, actin-associated scaffold, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dm3.pdb.
protein binding 20-apr-06 2dm3
(NMR, 20 structures)
Title: solution structure of the second ig domain of human palladin
Author: t. nagashima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: kiaa0992, myopalladin, actin-associated scaffold, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dmj.pdb.
transferase 21-apr-06 2dmj
Zn
(NMR, 20 structures)
Title: solution structure of the first zf-parp domain of human poly(adp-ribose)polymerase-1
Author: t. nagashima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dpq.pdb.
metal binding protein 13-may-06 2dpq
Cl Ca
Title: the crystal structures of the calcium-bound con-g and con- t(k7gamma) dimeric peptides demonstrate a novel metal- dependent helix-forming motif
Author: s. e. cnudde, m. prorok, q. dai, f. j. castellino, j. h. geiger
Keywords: con-g, nmdar antagonist, gla-containing
- 2dpr.pdb.
metal binding protein 13-may-06 2dpr
Ca
Title: the crystal structures of the calcium-bound con-g and con- t(k7gla) dimeric peptides demonstrate a novel metal- dependent helix-forming motif
Author: s. e. cnudde, m. prorok, q. dai, f. j. castellino, j. h. geiger
Keywords: con-t, nmdar antagonist, gla-containing
- 2drj.pdb.
transferase 09-jun-06 2drj
F
Title: xray structure of alpha-2,3/8-sialyltransferase cstii f91y mutant
Author: c. p. c. chiu, n. c. j. strynadka
- 2drt.pdb.
structural protein 14-jun-06 2drt
Title: structure analysis of (pog)4-log-(pog)5
Author: k. okuyama
Keywords: triple helix, leu
- 2drx.pdb.
structural protein 16-jun-06 2drx
Title: structure analysis of (pog)4-(log)2-(pog)4
Author: k. okuyama
Keywords: triple helix, leu
- 2e15.pdb.
transferase 18-oct-06 2e15
Title: crystal structure of arg173 to asn mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e16.pdb.
transferase 18-oct-06 2e16
Title: crystal structure of glu140 to arg mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e17.pdb.
transferase 18-oct-06 2e17
Title: crystal structure of arg173 to ala mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e18.pdb.
ligase 18-oct-06 2e18
Zn
Title: crystal structure of project ph0182 from pyrococcus horikoshii ot3
Author: k. shimizu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e19.pdb.
transcription 19-oct-06 2e19
(NMR, 20 structures)
Title: solution structure of the homeobox domain from human nil-2- a zinc finger protein, transcription factor 8
Author: s. ohnishi, n. tochio, s. koshiba, t. harada, s. watanabe, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: transcription factor, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e7l.pdb.
immune system 11-jan-07 2e7l
Title: structure of a high-affinity mutant of the 2c tcr in complex with ld/ql9
Author: k. c. garcia, l. a. colf
Keywords: mhc
- 2ea3.pdb.
hydrolase 30-jan-07 2ea3
Title: crystal structure of cellulomonas bogoriensis chymotrypsin
Author: a. shaw, r. bott
Keywords: chymotrypsin, protease
- 2eab.pdb.
hydrolase 31-jan-07 2eab
Ca
Title: crystal structure of 1,2-a-l-fucosidase from bifidobacterium bifidum (apo form)
Author: m. nagae, a. tsuchiya, t. katayama, k. yamamoto, s. wakatsuki, r. kato
Keywords: glycoside hydrolase
- 2eac.pdb.
hydrolase 31-jan-07 2eac
Ca
Title: crystal structure of 1,2-a-l-fucosidase from bifidobacterium bifidum in complex with deoxyfuconojirimycin
Author: m. nagae, a. tsuchiya, t. katayama, k. yamamoto, s. wakatsuki, r. kato
Keywords: glycoside hydrolase
- 2ead.pdb.
hydrolase 31-jan-07 2ead
Ca
Title: crystal structure of 1,2-a-l-fucosidase from bifidobacterium bifidum in complex with substrate
Author: m. nagae, a. tsuchiya, t. katayama, k. yamamoto, s. wakatsuki, r. kato
Keywords: glycoside hydrolase
- 2eae.pdb.
hydrolase 31-jan-07 2eae
Ca
Title: crystal structure of 1,2-a-l-fucosidase from bifidobacterium bifidum in complexes with products
Author: m. nagae, a. tsuchiya, t. katayama, k. yamamoto, s. wakatsuki, r. kato
Keywords: glycoside hydrolase
- 2ef9.pdb.
transferase 22-feb-07 2ef9
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2eha.pdb.
oxidoreductase 06-mar-07 2eha
Fe Ca
Title: crystal structure of goat lactoperoxidase complexed with formate anion at 3.3 a resolution
Author: a. k. singh, a. s. ethayathulla, n. singh, s. sharma, p. kaur, t. p. singh
Keywords: anti-microbail
- 2eib.pdb.
oxidoreductase 12-mar-07 2eib
Cu Na
Title: crystal structure of galactose oxidase, w290h mutant
Author: s. e. phillips, m. j. mcpherson, p. f. knowles, c. wilmot
- 2eic.pdb.
oxidoreductase 12-mar-07 2eic
Cu Na
Title: crystal structure of galactose oxidase mutant w290f
Author: n. akyumani, s. tamber, s. j. firbank, p. f. knowles, s. e. phillips, m. j. mcpherson
- 2eid.pdb.
oxidoreductase 12-mar-07 2eid
Cu Na
Title: galactose oxidase w290g mutant
Author: s. e. phillips, m. j. mcpherson, p. f. knowles, n. akyumani, s. j. firbank, s. tamber
- 2eie.pdb.
oxidoreductase 12-mar-07 2eie
Cu
Title: crystal structure of galactose oxidase complexed with azide
Author: s. e. phillips, m. j. mcpherson, p. f. knowles, n. akyumani, s. j. firbank, s. tamber
- 2exf.pdb.
viral protein/dna 08-nov-05 2exf
Zn
(NMR, 10 structures)
Title: solution structure of the hiv-1 nucleocapsid (ncp7(12-55)) complexed with the dna (-) primer binding site
Author: s. bourbigot, s. bouaziz, n. morellet
Keywords: stem-loop, bulge, zinc-finger
- 2f96.pdb.
structural genomics, hydrolase 05-dec-05 2f96
Mg Se
Title: 2.1 a crystal structure of pseudomonas aeruginosa rnase t (ribonuclease t)
Author: h. zheng, m. chruszcz, m. cymborowski, y. wang, e. gorodichtchenskaia, t. skarina, j. guthrie, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: rnt, rnase t, ribonuclease t, trna hydrolase, sad, psi, mcsg, protein structure initiative, midwest center for structural genomics
- 2ffz.pdb.
hydrolase 20-dec-05 2ffz
Zn
Title: structural studies examining the substrate specificity profiles of pc-plcbc protein variants
Author: a. b. benfield, n. m. antikainen, s. f. martin
Keywords: substrate specificity
- 2fgn.pdb.
hydrolase 22-dec-05 2fgn
Zn
Title: structural studies examining the substrate specificity profiles of pc-plcbc protein variants
Author: a. p. benfield, s. f. martin
Keywords: substrate specificity
- 2fki.pdb.
structural genomics, unknown function 04-jan-06 2fki
(NMR, 20 structures)
Title: nmr structure of protein yjbr from escherichia coli; northeast structural genomics consortium target er226
Author: k. k. singarapu, g. liu, r. xiao, k. g. shetty, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: er226, gft-nmr, alpha-beta , structural genomics, psi, protein structure initiative, northeast structural genomics consortium
- 2flg.pdb.
surface active protein 06-jan-06 2flg
(NMR, 20 structures)
Title: solution structure of an egf-like domain from the plasmodium falciparum merozoite surface protein 1
Author: s. james, k. moehle, g. pluschke, j. robinson
Keywords: extracellular, modular protein, surface antigen, malaria vaccine component, surface protein
- 2g1a.pdb.
hydrolase 14-feb-06 2g1a
Mg
Title: crystal structure of the complex between apha class b acid phosphatase/phosphotransferase
Author: r. leone, v. calderone, e. cappelletti, m. benvenuti, s. mangani
- 2gcq.pdb.
ligase 14-mar-06 2gcq
Mg
Title: fully ligated e.coli adenylosuccinate synthetase with gtp, 2'-deoxy-imp and hadacidin
Author: r. b. honzatko, y. zhou
- 2gg0.pdb.
hydrolase 23-mar-06 2gg0
Co F Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg2.pdb.
hydrolase 23-mar-06 2gg2
Co F Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg3.pdb.
hydrolase 23-mar-06 2gg3
Co F Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg5.pdb.
hydrolase 23-mar-06 2gg5
Co F Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg7.pdb.
hydrolase 23-mar-06 2gg7
Co Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg8.pdb.
hydrolase 23-mar-06 2gg8
Co Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2gg9.pdb.
hydrolase 23-mar-06 2gg9
Co Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2ggb.pdb.
hydrolase 23-mar-06 2ggb
Co Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2ggc.pdb.
hydrolase 23-mar-06 2ggc
Co Na
Title: novel bacterial methionine aminopeptidase inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: pita-bread fold, map inhibitor, antibacterial
- 2ggf.pdb.
translation 24-mar-06 2ggf
(NMR, 20 structures)
Title: solution structure of the ma3 domain of human programmed cell death 4
Author: t. nagata, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2gmn.pdb.
hydrolase 07-apr-06 2gmn
Zn
Title: crystal structure of bjp-1, a subclass b3 metallo-beta- lactamase of bradyrhizobium japonicum
Author: v. calderone, m. benvenuti, m. stoczko, j. d. docquier, g. m. rossolini, s. mangani
- 2got.pdb.
deoxyribonucleic acid 14-apr-06 2got
Br
Title: crystal structure of d(gcgaacgc): two types of bulge- containing duplexes
Author: j. kondo, t. sunami, a. takenaka
Keywords: bulge- containing duplex, base-intercalated duplex, single stranded dna, dna, x-ray structure, crystal structure
- 2gqv.pdb.
oxidoreductase 22-apr-06 2gqv
Title: high-resolution structure of a plasmid-encoded dihydrofolate reductase: pentagonal network of water molecules in the d2-symmetric active site
Author: n. narayana
Keywords: atomic-resolution structure, folate metabolism, plasmid-encoded r67 dhfr, tmp-resistant dhfr
- 2gsg.pdb.
immune system 26-apr-06 2gsg
Title: crystal structure of the fv fragment of a monoclonal antibody specific for poly-glutamine
Author: p. li, k. e. huey-tubman, a. p. west, m. j. bennett, p. j. bjorkman
Keywords: monoclonal antibody, poly-glutamine
- 2gyt.pdb.
protein binding 10-may-06 2gyt
(NMR, 10 structures)
Title: solution structure of the sam (sterile alpha motif) domain of dlc1 (deleted in liver cancer 1)
Author: s. yang
Keywords: protein structure
- 2gzu.pdb.
transcription regulator 12-may-06 2gzu
(NMR, 15 structures)
Title: high-resolution structure determination of the cylr2 homodimer using intermonomer distances from paramagnetic relaxation enhancement and nmr dipolar couplings
Author: s. rumpel, s. becker, m. zweckstetter
- 2h0g.pdb.
isomerase 15-may-06 2h0g
Title: crystal structure of dsbg t200m mutant
Author: a. hiniker, b. heras, j. l. martin, j. stuckey, j. c. a. bardwell
Keywords: periplasmic disulfide isomerase, chaperone, redox-active center
- 2h0h.pdb.
isomerase 15-may-06 2h0h
Title: crystal structure of dsbg k113e mutant
Author: a. hiniker, b. heras, j. l. martin, j. stuckey, j. c. a. bardwell
Keywords: periplasmic disulfide isomerase, chaperone, redox-active center
- 2h0i.pdb.
isomerase 15-may-06 2h0i
Title: crystal structure of dsbg v216m mutant
Author: a. hiniker, b. heras, j. l. martin, j. stuckey, j. c. a. bardwell
Keywords: periplasmic disulfide isomerase, chaperone, redox-active center
- 2h0n.pdb.
deoxyribonucleic acid 15-may-06 2h0n
Title: structure of the fully modified left-handed cyclohexene nucleic acid sequence gtgtacac
Author: k. robeyns, l. van meervelt
Keywords: dna analogue, left-handed, double helix
- 2h32.pdb.
immune system 22-may-06 2h32
Zn
Title: crystal structure of the pre-b cell receptor
Author: a. j. bankovich
Keywords: v and c-type ig folds
- 2h7t.pdb.
protein binding 03-jun-06 2h7t
(NMR, 20 structures)
Title: solution structure of the c-terminal domain of insulin-like growth factor binding protein 2 (igfbp-2)
Author: z. kuang
- 2h8c.pdb.
hydrolase/dna 07-jun-06 2h8c
Title: structure of rusa d70n in complex with dna
Author: r. a. macmaster
Keywords: recombination
- 2h8e.pdb.
hydrolase 07-jun-06 2h8e
Title: structure rusa d70n
Author: r. a. macmaster
Keywords: dna repair, resolvase
- 2h8m.pdb.
chaperone 07-jun-06 2h8m
I
Title: n-domain of grp94 in complex with the 2-iodo-neca
Author: r. m. immormino, d. t. gewirth
Keywords: hsp82, hsp90, htpg, chaperone, ligand, neca, npca, adenosine
- 2h95.pdb.
membrane protein 08-jun-06 2h95
(NMR)
Title: structure of the amantadine-blocked influenza a m2 proton channel trans-membrane domain by solid-state nmr spectroscopy
Author: j. hu, t. asbury, t. a. cross
Keywords: protein-ligand
- 2h9w.pdb.
luminescent protein 12-jun-06 2h9w
Title: green fluorescent protein ground states: the influence of a second protonation site near the chromophore
Author: g. garau
Keywords: chromophore, mutant, fluorescent, ph, biosensor, chloride, halide, halogen
- 2hax.pdb.
gene regulation/dna 13-jun-06 2hax
Ca
Title: crystal structure of bacillus caldolyticus cold shock protein in complex with hexathymidine
Author: k. e. a. max, u. heinemann
Keywords: beta barrel, protein-dna complex, single-stranded dna
- 2hbp.pdb.
endocytosis, protein binding 14-jun-06 2hbp
(NMR, 20 structures)
Title: solution structure of sla1 homology domain 1
Author: m. overduin, r. k. mahadev
Keywords: shd1, npfx(1,2)d, endocytosis
- 2hde.pdb.
transcription 20-jun-06 2hde
(NMR, 20 structures)
Title: solution structure of human sap18
Author: s. a. mccallum, j. p. yin, b. pan, w. j. fairbrother
Keywords: histone deacetylase, sin3, gli, bicoid, gaga, transcriptional repressor
- 2hm3.pdb.
structural protein 11-jul-06 2hm3
(NMR, 10 structures)
Title: nematocyst outer wall antigen, cysteine rich domain nw1
Author: s. meier, p. r. jensen, s. grzesiek, s. oezbek
Keywords: evolution, cysteine rich, nematocyst
- 2hnu.pdb.
peptide binding protein 13-jul-06 2hnu
Title: crystal structure of a dipeptide complex of bovine neurophysin-i
Author: x. li, h. lee, j. wu, e. breslow
Keywords: ligand-facilitated dimerization, inter-domain loop, amino-terminus, subunit interface, hydrogen bonding, nmr
- 2hnv.pdb.
peptide binding protein 13-jul-06 2hnv
Title: crystal structure of a dipeptide complex of the q58v mutant of bovine neurophysin-i
Author: x. li, h. lee, j. wu, e. breslow
Keywords: q58v mutant, inter-domain loop, beta sheet, 3,10 helix
- 2hnw.pdb.
peptide binding protein 13-jul-06 2hnw
Title: crystal structure of the f91stop mutant of des1-6 bovine neurophysin-i, unliganded state
Author: x. li, h. lee, j. wu, e. breslow
Keywords: des1-6, f91stop mutations, inter-domain loop, disulfides, beta sheet, 3,10 helix, subunit interface
- 2hog.pdb.
transferase 14-jul-06 2hog
Title: crystal structure of chek1 in complex with inhibitor 20
Author: y. yan, m. ikuta
Keywords: kinase, cell cycle checkpoint
- 2hqs.pdb.
transport protein/lipoprotein 19-jul-06 2hqs
Title: crystal structure of tolb/pal complex
Author: i. grishkovskaya, d. a. bonsor, c. kleanthous, e. j. dodson
Keywords: pal, tol
- 2hx2.pdb.
oxidoreductase 02-aug-06 2hx2
Zn Fe As
Title: bovine enos heme domain complexed with (4s)-n-{4-amino-5- [(2-aminoethyl)-hydroxyamino]-pentyl}-n'-nitroguanidine
Author: j. igarashi, h. li, t. l. poulos
Keywords: heme enzyme, inhibitor
- 2hx3.pdb.
oxidoreductase 02-aug-06 2hx3
Zn Fe
Title: rat nnos heme domain complexed with (4s)-n-{4-amino-5-[(2- aminoethyl)-hydroxyamino]-pentyl}-n'-nitroguanidine
Author: j. igarashi, h. li, t. l. poulos
Keywords: heme enzyme, inhibitor
- 2hx4.pdb.
oxidoreductase 02-aug-06 2hx4
Zn Fe
Title: rat nnos heme domain complexed with 4-n-(nw-nitro-l- argininyl)-trans-4-hydroxyamino-l-proline amide
Author: j. igarashi, h. li, t. l. poulos
Keywords: heme enzyme, inhibitor
- 2hyq.pdb.
sugar binding protein 07-aug-06 2hyq
Title: crystal structure of a complex of griffithsin with 6alpha- mannobiose
Author: n. e. ziolkowska, a. wlodawer
Keywords: lectins, domain swapping, mannose binding, hiv, sars
- 2hyr.pdb.
sugar binding protein 07-aug-06 2hyr
Mg
Title: crystal structure of a complex of griffithsin with maltose
Author: n. e. ziolkowska, a. wlodawer
Keywords: lectins, domain swapping, mannose binding, hiv, sars
- 2hz7.pdb.
ligase 08-aug-06 2hz7
Title: crystal structure of the glutaminyl-trna synthetase from deinococcus radiodurans
Author: m. deniziak, c. sauter, h. d. becker, c. paulus, r. giege, d. kern
Keywords: glnrs core, class i aminoacyl-trna synthetase
- 2i0r.pdb.
oxidoreductase 11-aug-06 2i0r
Title: crystal structure of aromatic amine dehydrogenase ttq- formamide adduct
Author: a. roujeinikova, d. leys
Keywords: carbinolamine oxidation
- 2i0s.pdb.
oxidoreductase 11-aug-06 2i0s
Title: crystal structure of aromatic amine dehydrogenase ttq- phenylacetaldehyde adduct
Author: a. roujeinikova, d. leys
Keywords: carbinolamine oxidation
- 2i0t.pdb.
oxidoreductase 11-aug-06 2i0t
Title: crystal structure of phenylacetaldehyde derived r- carbinolamine adduct of aromatic amine dehydrogenase
Author: a. roujeinikova, d. leys
Keywords: carbinolamine oxidation
- 2i3r.pdb.
hydrolase 20-aug-06 2i3r
Cl
Title: engineered catalytic domain of protein tyrosine phosphatase hptpbeta
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2i3u.pdb.
hydrolase 20-aug-06 2i3u
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2i4e.pdb.
hydrolase 21-aug-06 2i4e
V
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2i4g.pdb.
hydrolase 21-aug-06 2i4g
Cl
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with a sulfamic acid (soaking experiment)
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2i4h.pdb.
hydrolase 21-aug-06 2i4h
Cl Mg
Title: structural studies of protein tyrosine phosphatase beta catalytic domain co-crystallized with a sulfamic acid inhibitor
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2i5j.pdb.
transferase 24-aug-06 2i5j
Mg
Title: crystal structure of hiv-1 reverse transcriptase (rt) in complex with dhbnh, an rnase h inhibitor
Author: d. m. himmel, s. g. sarafianos, j. l. knight, r. m. levy, e. arnold
Keywords: hiv, reverse transcriptase, rt, rnase h inhibitor, rnhi, structure-based drug design, protein-inhibitor complex, drug resistance, crystal structure
- 2i5x.pdb.
hydrolase 26-aug-06 2i5x
Cl Mg
Title: engineering the ptpbeta catalytic domain with improved crystallization properties
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel, s. klopfenstein
Keywords: wpd-loop, drug design, protein engineering
- 2ic4.pdb.
immune system 12-sep-06 2ic4
(solution scattering)
Title: solution structure of the his402 allotype of the factor h scr6-scr7-scr8 fragment
Author: a. n. fernando, p. b. furtado, h. e. gilbert, s. j. clark, a. j. day, r. b. sim, s. j. perkins
Keywords: x-ray scattering, homology modelling, ultracentrifugation
- 2ig9.pdb.
oxidoreductase 22-sep-06 2ig9
Cl Fe Ca
Title: structure of a full-length homoprotocatechuate 2,3- dioxygenase from b. fuscum in a new spacegroup.
Author: e. g. kovaleva
Keywords: extradiol, fe(ii), homoprotocatechuate
- 2iga.pdb.
oxidoreductase 22-sep-06 2iga
Cl Fe Ca
Title: structure of homoprotocatechuate 2,3-dioxygenase from b. fuscum in complex with reactive intermediates formed via in crystallo reaction with 4-nitrocatechol at low oxygen concentrations.
Author: e. g. kovaleva
Keywords: extradiol, fe(ii), homoprotocatechuate, alkylperoxo intermediate, substrate-semiquinone, open-ring product
- 2ilr.pdb.
oncoprotein 03-oct-06 2ilr
Title: crystal structure of human fanconi anemia protein e c- terminal domain
Author: l. pellegrini, r. k. nookala
Keywords: helical repeat, fanc repeat
- 2ioc.pdb.
hydrolase 10-oct-06 2ioc
Mn Se
Title: the crystal structure of trex1 explains the 3' nucleotide specificity and reveals a polyproline ii helix for protein partenring
Author: u. de silva, t. hollis
Keywords: nucleotide complex, dnaq family
- 2is3.pdb.
hydrolase 16-oct-06 2is3
Se
Title: crystal structure of escherichia coli rnase t
Author: y. zuo, y. wang, a. malhotra
Keywords: ribonuclease, exoribonuclease, exonuclease, nuclease, hydrolase, stable rna maturation, trna end-turnover
- 2isv.pdb.
lyase 18-oct-06 2isv
Zn
Title: structure of giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate
Author: a. galkin, o. herzberg
Keywords: 6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target, x-ray structure
- 2isw.pdb.
lyase 18-oct-06 2isw
Zn
Title: structure of giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate
Author: a. galkin, o. herzberg
Keywords: 6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target, x-ray structure
- 2itm.pdb.
transferase 19-oct-06 2itm
Title: crystal structure of the e. coli xylulose kinase complexed with xylulose
Author: e. di luccio, j. voegtli, d. k. wilson
Keywords: xylulose, kinase, atpase, fggy kinase
- 2ivi.pdb.
oxidoreductase 13-jun-06 2ivi
Fe
Title: isopenicillin n synthase from aspergillus nidulans (anaerobic ac-methyl-cyclopropylglycine fe complex)
Author: j. m. elkins, a. r. howard-jones, i. j. clifton, p. l. roach, r. m. adlington, j. e. baldwin, p. j. rutledge
Keywords: antibiotic biosynthesis, iron, oxygenase, vitamin c, metal-binding, penicillin biosynthesis, oxidoreductase, b-lactam antibiotic
- 2ivj.pdb.
oxidoreductase 13-jun-06 2ivj
Fe
Title: isopenicillin n synthase from aspergillus nidulans (anaerobic ac-cyclopropylglycine fe complex)
Author: a. r. howard-jones, j. m. elkins, i. j. clifton, p. l. roach, r. m. adlington, j. e. baldwin, p. j. rutledge
Keywords: antibiotic biosynthesis, iron, oxygenase, vitamin c, metal-binding, penicillin biosynthesis, oxidoreductase, b-lactam antibiotic
- 2iwg.pdb.
immunoglobulin domain 30-jun-06 2iwg
Title: complex between the pryspry domain of trim21 and igg fc
Author: l. c. james, a. h. keeble, d. a. rhodes, j. trowsdale
Keywords: rna-binding, zinc-finger, dna-binding, ribonucleoprotein, immunoglobulin domain, immunoglobulin c region, systemic lupus erythematosus, polymorphism, glycoprotein, metal-binding
- 2j7u.pdb.
viral protein 17-oct-06 2j7u
Cl Mg Zn
Title: dengue virus ns5 rna dependent rna polymerase domain
Author: t. l. yap, t. xu, y. l. chen, h. malet, m. p. egloff, b. canard, s. g. vasudevan, j. lescar
Keywords: rna-dependent rna polymerase, dengue, flavivirus, high-throughput assay, viral protein
- 2j7w.pdb.
viral protein 17-oct-06 2j7w
Zn
Title: dengue virus ns5 rna dependent rna polymerase domain complexed with 3'dgtp
Author: t. l. yap, t. xu, y. l. chen, h. malet, m. p. egloff, b. canard, s. g. vasudevan, j. lescar
Keywords: rna-dependent rna polymerase, dengue, flavivirus, high-throughput assay, viral protein
- 2jf2.pdb.
transferase 25-jan-07 2jf2
Title: nucleotide substrate binding by udp-n-acetylglucosamine acyltransferase
Author: v. ulaganathan, l. buetow, w. n. hunter
Keywords: transferase, acyltransferase, lipid synthesis
- 2jf3.pdb.
transferase 25-jan-07 2jf3
Title: nucleotide substrate binding by udp-n-acetylglucosamine acyltransferase
Author: v. ulaganathan, l. buetow, w. n. hunter
Keywords: transferase, acyltransferase, lipid synthesis
- 2jg1.pdb.
transferase 13-feb-07 2jg1
Mg Se
Title: structure of staphylococcus aureus d-tagatose-6-phosphate kinase with cofactor and substrate
Author: l. miallau, w. hunter, s. mcsweeney, g. leonard
Keywords: phosphoryl transfer, conformational changes, kinase, transferase, lactose metabolism
- 2jge.pdb.
hydrolase 13-feb-07 2jge
Title: crystal structure of mouse acetylcholinesterase inhibited by non-aged methamidophos
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation, synapse, membrane, hydrolase, glycoprotein
- 2jgf.pdb.
hydrolase 13-feb-07 2jgf
Title: crystal structure of mouse acetylcholinesterase inhibited by non-aged fenamiphos
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation, synapse, membrane, hydrolase, fenamiphos
- 2jgg.pdb.
hydrolase 13-feb-07 2jgg
Title: crystal structure of mouse acetylcholinesterase inhibited by non-aged sarin
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation, synapse, membrane, hydrolase, fenamiphos
- 2jgh.pdb.
hydrolase 13-feb-07 2jgh
Title: crystal structure of mouse acetylcholinesterase inhibited by non-aged vx
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: acetylcholinesterase, alternative splicing, neurotransmitter degradation, vx, synapse, membrane, hydrolase, glycoprotein
- 2jgi.pdb.
hydrolase 13-feb-07 2jgi
Title: crystal structure of mouse acetylcholinesterase inhibited by non-aged diisopropyl fluorophosphate (dfp)
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: synapse, membrane, hydrolase, glycoprotein, serine esterase, acetylcholinesterase, neurotransmitter degradation, alternative splicing, diisopropyl fluorophosphate
- 2jgj.pdb.
hydrolase 13-feb-07 2jgj
Title: crystal structure of mouse acetylcholinesterase inhibited by aged methamidophos
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: synapse, membrane, hydrolase, glycoprotein, methamidophos, serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation
- 2jgk.pdb.
hydrolase 13-feb-07 2jgk
Title: crystal structure of mouse acetylcholinesterase inhibited by aged fenamiphos
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: synapse, membrane, hydrolase, fenamiphos, glycoprotein, serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation
- 2jgl.pdb.
hydrolase 13-feb-07 2jgl
Title: crystal structure of mouse acetylcholinesterase inhibited by aged vx and sarin
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: serine esterase, acetylcholinesterase, alternative splicing, neurotransmitter degradation, vx, sarin, aging, synapse, membrane, hydrolase
- 2jgm.pdb.
hydrolase 13-feb-07 2jgm
Title: crystal structure of mouse acetylcholinesterase inhibited by aged diisopropyl fluorophosphate (dfp)
Author: a. hornberg, a. -k. tunemalm, f. ekstrom
Keywords: dfp, aging, synapse, membrane, hydrolase, glycoprotein, serine esterase, acetylcholinesterase, alternative splicing, diisopropyl fluorophosphate
- 2jgv.pdb.
transferase 16-feb-07 2jgv
Se
Title: structure of staphylococcus aureus d-tagatose-6-phosphate kinase in complex with adp
Author: l. miallau, w. hunter, s. mcsweeney, g. leonard
Keywords: phosphoryl transfer, conformational changes, kinase, transferase, lactose metabolism
- 2jhf.pdb.
oxidoreductase 22-feb-07 2jhf
Cd
Title: structural evidence for a ligand coordination switch in liver alcohol dehydrogenase
Author: r. meijers, h. w. adolph, z. dauter, k. s. wilson, v. s. lamzin, e. s. cedergren-zeppezauer
Keywords: metal coordination, nad, zinc, inhibition, acetylation, metal-binding, alcohol dehydrogenase
- 2jhg.pdb.
oxidoreductase 22-feb-07 2jhg
Zn
Title: structural evidence for a ligand coordination switch in liver alcohol dehydrogenase
Author: r. meijers, h. w. adolph, z. dauter, k. s. wilson, v. s. lamzin, e. s. cedergren-zeppezauer
Keywords: metal coordination, nad, zinc, inhibition, acetylation, metal-binding, alcohol dehydrogenase
- 2jho.pdb.
oxygen transport 23-feb-07 2jho
Zn Fe
Title: cyanomet sperm whale myoglobin at 1.4a resolution
Author: a. arcovito, m. benfatto, m. cianci, s. s. hasnain, k. nienhaus, g. u. nienhaus, c. savino, r. w. strange, b. vallone, s. d. longa
Keywords: heme, iron, transport, metal-binding, muscle protein
- 2jm8.pdb.
structural protein 25-oct-06 2jm8
(NMR, 20 structures)
Title: r21a spc-sh3 free
Author: n. a. j. van nuland, s. casares, e. ab, h. eshuis, o. lopez-mayorga, f. conejero-lara
Keywords: b-barrel
- 2jm9.pdb.
structural protein 25-oct-06 2jm9
(NMR, 20 structures)
Title: r21a spc-sh3 bound
Author: n. a. j. van nuland, s. casares, e. ab, h. eshuis, o. lopez-mayorga, f. conejero-lara
Keywords: p41-bound
- 2jma.pdb.
structural protein 25-oct-06 2jma
(NMR, 20 structures)
Title: r21a spc-sh3:p41 complex
Author: n. a. j. van nuland, s. casares, e. ab, h. eshuis, o. lopez-mayorga, f. conejero-lara
Keywords: p41-bound
- 2jmc.pdb.
signaling protein 02-nov-06 2jmc
(NMR, 20 structures)
Title: chimer between spc-sh3 and p41
Author: n. a. j. van nuland, a. m. candel, j. c. martinez, f. conejero-lara, m. bruix
Keywords: spc-sh3, p41
- 2jmx.pdb.
hydrolase 12-dec-06 2jmx
(NMR, 30 structures)
Title: oscp-nt (1-120) in complex with n-terminal (1-25) alpha subunit from f1-atpase
Author: r. j. carbajo, d. neuhaus, f. a. kellas, j. yang, m. j. runswick, m. g. montgomery, j. e. walker
- 2jny.pdb.
structural genomics, unknown function 14-feb-07 2jny
(NMR, 20 structures)
Title: solution nmr structure of protein uncharacterized bcr, northeast structural genomics consortium target cgr1
Author: y. wu, g. liu, q. zhang, c. chen, c. nwosu, k. cunningham, l. ma, r. xiao, j. liu, m. baran, g. swapna, t. acton, b. rost, g. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: structure, cgr1, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2joq.pdb.
structural genomics, unknown function 19-mar-07 2joq
(NMR, 20 structures)
Title: solution structure of protein hp0495 from h. pylori; northeast structural genomics consortium target pt2; ontario centre for structural proteomics target hp0488
Author: a. gutmanas, a. lemak, a. yee, m. karra, s. srisailam, a. semesi, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
Keywords: structural genomics, non-uniform sampling, abacus, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, ontario centre for structural proteomics, ocsp
- 2nlx.pdb.
transferase 20-oct-06 2nlx
Title: crystal structure of the apo e. coli xylulose kinase
Author: e. di luccio, j. voegtli, d. k. wilson
Keywords: fggy kinase, atpase, xylulose, kinase
- 2nmx.pdb.
lyase 23-oct-06 2nmx
Zn Na
Title: structure of inhibitor binding to carbonic anhydrase i
Author: d. w. christianson, k. m. jude
Keywords: hydro lyase
- 2nn1.pdb.
lyase 23-oct-06 2nn1
Zn Na
Title: structure of inhibitor binding to carbonic anhydrase i
Author: d. w. christianson, k. m. jude
- 2npr.pdb.
membrane protein 29-oct-06 2npr
(NMR, 20 structures)
Title: structural studies on plasmodium vivax merozoite surface protein-1
Author: j. j. babon, w. d. morgan, g. kelly, j. f. eccleston, j. feeney, a. a. holder
- 2nsh.pdb.
lyase 04-nov-06 2nsh
Title: e. coli pure h45q mutant complexed with nitro-air
Author: s. e. ealick, m. morar
Keywords: kinked c- terminal helix
- 2nsj.pdb.
lyase 04-nov-06 2nsj
Title: e. coli pure h45q mutant complexed with cair
Author: s. e. ealick, m. morar
Keywords: kinked c- terminal helix
- 2nsl.pdb.
lyase 04-nov-06 2nsl
Title: e. coli pure h45n mutant complexed with cair
Author: s. e. ealick, m. morar
Keywords: kinked c- terminal helix
- 2nsm.pdb.
hydrolase 05-nov-06 2nsm
Title: crystal structure of the human carboxypeptidase n (kininase i) catalytic domain
Author: c. keil, k. maskos, m. than, j. t. hoopes, r. huber, f. tan, p. a. deddish, e. g. erdoes, r. a. skidgel, w. bode
Keywords: zinc peptidase, transthyretin-like domain, hormone processing, peptide modification
- 2ntk.pdb.
hydrolase 07-nov-06 2ntk
Title: crystal structure of puro/imp from methanothermobacter thermoautotrophicus
Author: y. n. kang, a. tran, r. h. white, s. e. ealick
- 2ntl.pdb.
hydrolase 07-nov-06 2ntl
Title: crystal structure of puro/aicar from methanothermobacter thermoautotrophicus
Author: y. n. kang, a. tran, r. h. white, s. e. ealick
- 2ntm.pdb.
hydrolase 07-nov-06 2ntm
Title: crystal structure of puro from methanothermobacter thermoautotrophicus
Author: y. n. kang, a. tran, r. h. white, s. e. ealick
- 2nvc.pdb.
oxidoreductase 12-nov-06 2nvc
Title: human aldose reductase complexed with novel naphtho[1,2- d]isothiazole acetic acid derivative (3)
Author: h. steuber, a. heine, g. klebe
Keywords: protein-ligand complex, aldose reductase
- 2nvd.pdb.
oxidoreductase 12-nov-06 2nvd
Title: human aldose reductase complexed with novel naphtho[1,2- d]isothiazole acetic acid derivative (2)
Author: h. steuber, a. heine, g. klebe
Keywords: tim-barrel, protein-ligand complex
- 2nvk.pdb.
oxidoreductase 13-nov-06 2nvk
Title: crystal structure of thioredoxin reductase from drosophila melanogaster
Author: b. e. eckenroth, m. a. rould, r. j. hondal, s. j. everse
Keywords: rossmann, flavoprotein
- 2nwm.pdb.
cell adhesion 15-nov-06 2nwm
(NMR, 20 structures)
Title: solution structure of the first sh3 domain of human vinexin and its interaction with the peptides from vinculin
Author: j. zhang, b. yao, j. wu, y. shi
- 2nwo.pdb.
lyase 16-nov-06 2nwo
Zn
Title: structural and kinetic effect of hydrophobic mutations in the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nwp.pdb.
lyase 16-nov-06 2nwp
Zn
Title: structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nwr.pdb.
transferase 16-nov-06 2nwr
Title: crystal structure of c11n mutant of kdo8p synthase in complex with pep
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2nws.pdb.
transferase 16-nov-06 2nws
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2nwy.pdb.
lyase 16-nov-06 2nwy
Zn
Title: structural and kinetic effects of hydrophobic mutations on the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nwz.pdb.
lyase 16-nov-06 2nwz
Zn
Title: structural and kinetic effects of hydrophobic mutations on the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nx1.pdb.
transferase 16-nov-06 2nx1
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p, rp5
- 2nx3.pdb.
transferase 16-nov-06 2nx3
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2nxg.pdb.
transferase 17-nov-06 2nxg
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase.
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2nxh.pdb.
transferase 17-nov-06 2nxh
Title: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase.
Author: f. kona, x. xu, p. martin, p. kuzmic, d. l. gatti
Keywords: kdo8p, kdo8ps, pep, a5p
- 2nxr.pdb.
lyase 19-nov-06 2nxr
Zn
Title: structural effects of hydrophobic mutations on the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nxs.pdb.
lyase 19-nov-06 2nxs
Zn
Title: structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nxt.pdb.
lyase 19-nov-06 2nxt
Zn
Title: structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase ii
Author: s. z. fisher, r. mckenna
Keywords: histidine 64, carbonic anhydrase
- 2nyh.pdb.
oxidoreductase 20-nov-06 2nyh
Se
Title: crystal structure of putative dioxygenase (yp_555069.1) from burkholderia xenovorans lb400 at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative dioxygenase, structural genomics, psi- 2, protein structure initiative, joint center for structural genomics, jcsg
- 2o0i.pdb.
surface active protein 27-nov-06 2o0i
Title: crystal structure of the r185a mutant of the n-terminal domain of the group b streptococcus alpha c protein
Author: j. m. hogle, d. j. filman, m. j. baron, l. c. madoff, a. iglesias
Keywords: beta sandwich, fibronectin fold, antiparallel three-helix bundle
- 2o36.pdb.
hydrolase 30-nov-06 2o36
Zn
Title: crystal structure of engineered thimet oligopeptidase with neurolysin specificity in neurotensin cleavage site
Author: d. w. rodgers, e. j. lim
Keywords: substrate-binding channel
- 2o3e.pdb.
hydrolase 01-dec-06 2o3e
Zn
Title: crystal structure of engineered neurolysin with thimet oligopeptidase specificity for neurotensin cleavage site.
Author: d. w. rodgers, e. j. lim
Keywords: substrate-binding channel
- 2o3o.pdb.
signaling protein 01-dec-06 2o3o
Cl Se
Title: crystal structure of the sensor histidine kinase regulator yyci from bacillus subtitlis
Author: e. santelli, r. c. liddington
- 2o4y.pdb.
deoxyribonucleic acid 05-dec-06 2o4y
(NMR, 28 structures)
Title: solution structure of a dna duplex containing the universal base 5-nitroindole-3-carboxamide
Author: j. gallego, d. loakes
- 2o99.pdb.
dna binding protein 13-dec-06 2o99
Se
Title: the crystal structure of e.coli iclr c-terminal fragment in complex with glyoxylate
Author: v. v. lunin, a. ezersky, e. evdokimova, m. kudritska, a. savchenko
- 2o9a.pdb.
dna binding protein 13-dec-06 2o9a
Title: the crystal structure of the e.coli iclr c-terminal fragment in complex with pyruvate.
Author: v. v. lunin, a. ezersky, e. evdokimova, m. kudritska, a. savchenko
Keywords: iclr
- 2o9d.pdb.
membrane protein 13-dec-06 2o9d
Title: crystal structure of aqpz mutant t183c.
Author: d. f. savage, r. m. stroud
Keywords: integral membrane protein
- 2o9e.pdb.
membrane protein 13-dec-06 2o9e
Hg
Title: crystal structure of aqpz mutant t183c complexed with mercury
Author: d. f. savage, r. m. stroud
Keywords: integral membrane protein
- 2o9f.pdb.
membrane protein 13-dec-06 2o9f
Title: crystal structure of aqpz mutant l170c
Author: d. f. savage, r. m. stroud
Keywords: integral membrane protein
- 2o9g.pdb.
membrane protein 13-dec-06 2o9g
Hg
Title: crystal structure of aqpz mutant l170c complexed with mercury.
Author: d. f. savage, r. m. stroud
Keywords: integral membrane protein
- 2oa8.pdb.
hydrolase/dna 15-dec-06 2oa8
Ca Se
Title: crystal structure of mtrex1 with ssdna
Author: u. de silva, t. hollis
Keywords: ssdna complex, dnaq family
- 2obr.pdb.
viral protein 20-dec-06 2obr
Title: crystal structures of p domain of norovirus va387
Author: s. cao, z. lou, x. jiang, x. c. zhang, x. li, z. rao
Keywords: p domain, norovirus va387
- 2obs.pdb.
viral protein 20-dec-06 2obs
Title: crystal structures of p domain of norovirus va387 in complex with blood group trisaccharides type a
Author: s. cao, x. li, z. rao
Keywords: p domain, norovirus va387, blood group trisaccharides type a
- 2obt.pdb.
viral protein 20-dec-06 2obt
Title: crystal structures of p domain of norovirus va387 in complex with blood group trisaccharides type b
Author: s. cao, x. li, z. rao
Keywords: p domain, norovirus va387, blood group trisaccharides type b
- 2od4.pdb.
structural genomics, unknown function 21-dec-06 2od4
Cl Se
Title: crystal structure of a dimeric ferredoxin-like protein (jcvi_pep_1096665735785) from an environmental metagenome (unidentified marine microbe), sorcerer ii global ocean sampling experiment at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: metagenomics, hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2od5.pdb.
structural genomics, unknown function 21-dec-06 2od5
Cl Se
Title: crystal structure of a putative nucleic acid binding protein (jcvi_pep_1096688149193) from an environmental metagenome (unidentified marine microbe), sorcerer ii global ocean sampling experiment at 1.79 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: metagenomics, hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2od6.pdb.
structural genomics, unknown function 21-dec-06 2od6
Se
Title: crystal structure of a dimeric ferredoxin-like protein (jcvi_pep_1096682647733) from an environmental metagenome (unidentified marine microbe), sorcerer ii global ocean sampling experiment at 1.85 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: metagenomics, hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2oe5.pdb.
ribonucleic acid 28-dec-06 2oe5
Mg
Title: 1.5 a x-ray crystal structure of apramycin complex with rna fragment ggcgucgcuaguaccg/gguacuaaaagucgccc containing the human ribosomal decoding a site: rna construct with 3'- overhang
Author: t. hermann, v. tereshko, e. skripkin, d. j. patel
Keywords: apramycin, ribosomal decoding site, a site, homo sapiens, rna duplex
- 2oe6.pdb.
ribonucleic acid 28-dec-06 2oe6
Title: 2.4a x-ray crystal structure of unliganded rna fragment gggcgucgcuaguacc/cgguacuaaaagucgcc containing the human ribosomal decoding a site: rna construct with 5'-overhang
Author: t. hermann, v. tereshko, e. skripkin, d. j. patel
Keywords: a site, homo sapiens, rna duplex
- 2oe8.pdb.
ribonucleic acid 28-dec-06 2oe8
Title: 1.8 a x-ray crystal structure of apramycin complex with rna fragment gggcgucgcuaguacc/cgguacuaaaagucgcc containing the human ribosomal decoding a site: rna construct with 5'- overhang
Author: t. hermann, v. tereshko, e. skripkin, d. j. patel
Keywords: apramycin, ribosomal decoding site, a site, homo sapiens, rna duplex
- 2oej.pdb.
isomerase 30-dec-06 2oej
Title: crystal structure of a rubisco-like protein from geobacillus kaustophilus (tetramutant form), liganded with phosphate ions
Author: a. a. fedorov, h. j. imker, e. v. fedorov, s. c. almo, j. a. gerlt
Keywords: "enolase"
- 2oek.pdb.
isomerase 30-dec-06 2oek
Mg
Title: crystal structure of a rubisco-like protein from geobacillus kaustophilus liganded with mg2+ ions
Author: a. a. fedorov, h. j. imker, e. v. fedorov, s. c. almo, j. a. gerlt
Keywords: "enolase"
- 2oel.pdb.
isomerase 30-dec-06 2oel
Mg
Title: crystal structure of a rubisco-like protein from geobacillus kaustophilus liganded with mg2+ and hco3- ions
Author: a. a. fedorov, h. j. imker, e. v. fedorov, s. c. almo, j. a. gerlt
Keywords: "enolase"
- 2oem.pdb.
isomerase 30-dec-06 2oem
Mg
Title: crystal structure of a rubisco-like protein from geobacillus kaustophilus liganded with mg2+ and 2,3- diketohexane 1-phosphate
Author: a. a. fedorov, h. j. imker, e. v. fedorov, j. a. gerlt, s. c. almo
Keywords: "enolase"
- 2of2.pdb.
transferase 02-jan-07 2of2
Title: crystal structure of furanopyrimidine 8 bound to lck
Author: m. w. martin
Keywords: kinase domain
- 2of4.pdb.
transferase 02-jan-07 2of4
Title: crystal structure of furanopyrimidine 1 bound to lck
Author: m. w. martin
Keywords: kinase domain
- 2ofy.pdb.
transcription 04-jan-07 2ofy
Se
Title: crystal structure of putative xre-family transcriptional regulator from rhodococcus sp.
Author: i. a. shumilin, t. skarina, o. onopriyenko, v. yim, m. chruszcz, m. cymborowski, a. savchenko, a. edwards, a. joachimiak, w. minor, midwest center for structural genomics (mcsg)
Keywords: xre-family, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2ogx.pdb.
metal binding protein 09-jan-07 2ogx
Mg W Se
Title: the crystal structure of the molybdenum storage protein from azotobacter vinelandii loaded with polyoxotungstates (wsto)
Author: j. schemberg, e. warkentin, u. ermler
- 2ohf.pdb.
hydrolase 10-jan-07 2ohf
Title: crystal structure of human ola1 in complex with amppcp
Author: t. marquardt, d. kostrewa
- 2oi9.pdb.
immune system 10-jan-07 2oi9
Title: structure of the 2c/ld/ql9 allogeneic complex
Author: k. c. garcia, l. a. colf
Keywords: mhc
- 2oiz.pdb.
oxidoreductase 12-jan-07 2oiz
Title: crystal structure of the tryptamine-derived (indol-3- acetamide)-ttq adduct of aromatic amine dehydrogenase
Author: a. roujeinikova, d. leys
Keywords: tryptophan tryptophyl quinone, h-tunneling
- 2oj5.pdb.
viral protein 12-jan-07 2oj5
Mg
Title: crystal structure of reovirus t3d attachment protein sigma1 head domain wild-type at 1.75 a resolution
Author: t. stehle, p. schelling, e. kirchner, t. s. dermody
Keywords: beta-spiral repeat, aspartic acid cluster, greek key motif, trimer
- 2oj6.pdb.
viral protein 12-jan-07 2oj6
Mg
Title: crystal structure of reovirus t3d attachment protein sigma1 head domain d345n mutant
Author: t. stehle, e. kirchner, t. s. dermody
Keywords: beta-spiral repeat, aspartic acid cluster, greek key motif, trimer
- 2ok6.pdb.
oxidoreductase 16-jan-07 2ok6
Title: crystal structure of aromatic amine dehydrogenase ttq- formamide adduct oxidized with ferricyanide.
Author: a. roujeinikova, d. leys
Keywords: ttq
- 2okj.pdb.
lyase 17-jan-07 2okj
Title: the x-ray crystal structure of the 67kda isoform of glutamic acid decarboxylase (gad67)
Author: a. m. buckle, g. fenalti, r. h. p. law, j. c. whisstock
- 2okk.pdb.
lyase 17-jan-07 2okk
Title: the x-ray crystal structure of the 65kda isoform of glutamic acid decarboxylase (gad65)
Author: a. m. buckle, g. fenalti, r. h. p. law, j. c. whisstock
- 2okr.pdb.
transferase 17-jan-07 2okr
Title: crystal structure of the p38a-mapkap kinase 2 heterodimer
Author: e. ter haar
Keywords: nls, nes, heterodimer, docking groove
- 2oks.pdb.
deoxyribonucleic acid 17-jan-07 2oks
Ca
Title: x-ray structure of a dna repair substrate containing an alkyl interstrand crosslink at 1.65 resolution
Author: m. c. swenson, s. r. paranawithana, p. s. miller, c. l. kielkopf
Keywords: dna, dna damage
- 2okv.pdb.
hydrolase 17-jan-07 2okv
Mg
Title: c-myc dna unwinding element binding protein
Author: b. bae, s. k. nair
Keywords: due, atpase, trna deacylase
- 2ol3.pdb.
immune system 18-jan-07 2ol3
Title: crystal structure of bm3.3 scfv tcr in complex with pbm8-h- 2kbm8 mhc class i molecule
Author: c. mazza, n. auphan-anezin, c. gregoire, a. guimezanes, c. kellenberger, a. roussel, a. kearney, p. a. van der merwe, a. m. schmitt-verhulst, b. malissen
Keywords: class i mhc, h-2kbm8, tcr-pmhc complex
- 2om9.pdb.
transcription 21-jan-07 2om9
Title: ajulemic acid, a synthetic cannabinoid bound to ppar gamma
Author: a. l. b. ambrosio, r. c. garratt
Keywords: ajulemic acid, cannabinoid, partial agonist
- 2ong.pdb.
lyase 23-jan-07 2ong
F Mn
Title: crystal structure of of limonene synthase with 2- fluorogeranyl diphosphate (fgpp).
Author: d. c. hyatt, b. youn, r. croteau, c. kang
Keywords: monoterpene cyclase, crystal structure, geranyl diphosphate, 2 fluorogeranyl diphosphate, linalyl diphosphate, 2-fluorolinalyl diphosphate
- 2onh.pdb.
lyase 24-jan-07 2onh
F Mn
Title: crystal structure of of limonene synthase with 2- fluorolinalyl diphosphate(flpp)
Author: d. c. hyatt, b. youn, r. croteau, c. kang
Keywords: monoterpene cyclase, crystal structure, geranyl diphosphate, 2 fluorogeranyl diphosphate, linalyl diphosphate, 2-fluorolinalyl diphosphate
- 2onl.pdb.
transferase 24-jan-07 2onl
Title: crystal structure of the p38a-mapkap kinase 2 heterodimer
Author: e. ter haar
Keywords: kinase, nls, nes, docking groove
- 2opc.pdb.
protein binding, metal binding protein 29-jan-07 2opc
Co
Title: structure of melampsora lini avirulence protein, avrl567-a
Author: g. guncar, c. i. wang, j. k. forwood, t. teh, a. m. catanzariti, j. g. ellis, p. n. dodds, b. kobe
Keywords: cobalt, crystallization, single-wavelength anomalous dispersion (sad), plant disease resistance
- 2oqi.pdb.
hydrolase 31-jan-07 2oqi
F
Title: human dipeptidyl peptidase iv (dpp4) with piperidinone- constrained phenethylamine
Author: z. pei, x. li, t. w. von geldern, k. l. longenecker, d. pireh, k. d. stewart, b. j. backes, c. lai, t. h. lubben, s. j. ballaron, d. w. beno, a. j. kempf-grote, h. l. sham, j. m. trevillyan
Keywords: inhibitor
- 2oqv.pdb.
hydrolase 01-feb-07 2oqv
F
Title: human dipeptidyl peptidase iv (dpp4) with piperidine- constrained phenethylamine
Author: z. pei, x. li, t. w. von geldern, k. l. longenecker, d. pireh, k. d. stewart
Keywords: inhibitor
- 2orl.pdb.
electron transport 03-feb-07 2orl
Fe
(NMR, 25 structures)
Title: solution structure of the cytochrome c- para-aminophenol adduct
Author: m. assfalg, i. bertini, r. del conte, a. giachetti, p. turano
- 2ot3.pdb.
protein transport 07-feb-07 2ot3
Title: crystal structure of rabex-5 vps9 domain in complex with nucleotide free rab21
Author: a. delprato, d. lambright
Keywords: vps9 domain, rab21, vesicular traffic, protein transport
- 2otu.pdb.
immune system 09-feb-07 2otu
Title: crystal structure of fv polyglutamine complex
Author: p. li
- 2otw.pdb.
immune system 09-feb-07 2otw
Title: crystal structure of fv polyglutamine complex
Author: p. li
Keywords: polyglutamine, complex
- 2ou7.pdb.
transferase 09-feb-07 2ou7
Mg Zn
Title: structure of the catalytic domain of human polo-like kinase 1
Author: y. -h. ding, m. kothe, d. kohls, s. low
- 2oun.pdb.
hydrolase 12-feb-07 2oun
Mg Zn
Title: crystal structure of pde10a2 in complex with amp
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson, h. m. ke
Keywords: product binding
- 2oup.pdb.
hydrolase 12-feb-07 2oup
Mg Zn
Title: crystal structure of pde10a
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
- 2ouq.pdb.
hydrolase 12-feb-07 2ouq
Mg Zn
Title: crystal structure of pde10a2 in complex with gmp
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
Keywords: gmp complex
- 2our.pdb.
hydrolase 12-feb-07 2our
Mg
Title: crystal structure of pde10a2 mutant d674a in complex with camp
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
Keywords: camp, substrate specificity
- 2ous.pdb.
hydrolase 12-feb-07 2ous
Mg
Title: crystal structure of pde10a2 mutant d674a
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
- 2ouu.pdb.
hydrolase 12-feb-07 2ouu
Mg
Title: crystal structure of pde10a2 mutant d674a in complex with cgmp
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
Keywords: cgmp, substrate specificity
- 2ouv.pdb.
hydrolase 12-feb-07 2ouv
Mg Zn
Title: crystal structure of pde10a2 mutant of d564n
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
- 2ouy.pdb.
hydrolase 12-feb-07 2ouy
Mg Zn
Title: crystal structure of pde10a2 mutant d564a in complex with camp.
Author: h. c. wang, y. d. liu, j. hou, m. y. zheng, h. robinson
Keywords: substrate specificity, camp
- 2ovp.pdb.
transcription/cell cycle 14-feb-07 2ovp
Title: structure of the skp1-fbw7 complex
Author: b. hao, s. oehlmann, m. e. sowa, j. w. harper, n. p. pavletich
- 2ovq.pdb.
transcription/cell cycle 14-feb-07 2ovq
Title: structure of the skp1-fbw7-cyclinedegc complex
Author: b. hao, s. oehlmann, m. e. sowa, j. w. harper, n. p. pavletich
- 2ovr.pdb.
transcription/cell cycle 14-feb-07 2ovr
Title: structure of the skp1-fbw7-cyclinedegn complex
Author: b. hao, s. oehlmann, m. e. sowa, j. w. harper, n. p. pavletich
- 2owb.pdb.
transferase 15-feb-07 2owb
Zn
Title: structure of the catalytic domain of human polo-like kinase 1
Author: y. -h. ding, m. kothe, d. kohls, s. low
Keywords: plk1, polo-like kinase1, kinase, crystal structure
- 2owc.pdb.
transferase 16-feb-07 2owc
Title: structure of a covalent intermediate in thermus thermophilus amylomaltase
Author: t. r. m. barends, j. b. bultema, t. kaper, m. j. e. c. van der maarel, l. dijkhuizen, b. w. dijkstra
Keywords: alpha-amylase, beta-alpha-barrel, glycosyl- enzyme
- 2oww.pdb.
transferase 17-feb-07 2oww
Title: covalent intermediate in amylomaltase in complex with the acceptor analog 4-deoxyglucose
Author: t. r. m. barends, j. b. bultema, t. kaper, m. j. e. c. van der maarel, l. dijkhuizen, b. w. dijkstra
Keywords: covalent intermediate, beta-alpha barrel
- 2owx.pdb.
transferase 17-feb-07 2owx
Title: thermus thermophilus amylomaltase at ph 5.6
Author: t. r. m. barends, t. kaper, j. j. bultema, l. dijkhuizen, j. e. c. van der maarel, b. w. dijkstra
Keywords: succinimide residue in main chain
- 2oxr.pdb.
hydrolase 21-feb-07 2oxr
Mg
Title: pab0955 crystal structure : a gtpase in gdp and mg bound form from pyrococcus abyssi (after gtp hydrolysis)
Author: s. gras, p. carpentier, j. armengaud, d. housset
Keywords: gtp binding protein, gtpase, p-loop, rossman fold, gdp
- 2oza.pdb.
signaling protein/transferase 25-feb-07 2oza
Title: structure of p38alpha complex
Author: a. white, c. a. pargellis, j. m. studts, b. g. werneburg, b. t. farmer ii
Keywords: protein-protein complex, p38a, mk2
- 2p23.pdb.
signaling protein 06-mar-07 2p23
Title: crystal structure of human fgf19
Author: m. mohammadi
- 2p39.pdb.
signaling protein 08-mar-07 2p39
Title: crystal structure of human fgf23
Author: m. mohammadi
- 2p3a.pdb.
hydrolase 08-mar-07 2p3a
Title: crystal structure of the multi-drug resistant mutant subtype b hiv protease complexed with tl-3 inhibitor
Author: m. sanches, s. krauchenco, n. h. martins, a. gustchina, a. wlodawer, i. polikarpov
Keywords: multi-drug resistant mutant subtype b hiv protease, tl-3 inhibitor
- 2p3b.pdb.
hydrolase 08-mar-07 2p3b
Title: crystal structure of the subtype b wild type hiv protease complexed with tl-3 inhibitor
Author: m. sanches, s. krauchenco, n. h. martins, a. gustchina, a. wlodawer, i. polikarpov
Keywords: wild type subtype b hiv protease, tl-3 inhibitor
- 2p3c.pdb.
hydrolase 08-mar-07 2p3c
Title: crystal structure of the subtype f wild type hiv protease complexed with tl-3 inhibitor
Author: m. sanches, s. krauchenco, n. h. martins, a. gustchina, a. wlodawer, i. polikarpov
Keywords: wild type subtype f hiv protease, tl-3 inhibitor, non-b hiv protease
- 2p3d.pdb.
hydrolase 08-mar-07 2p3d
Title: crystal structure of the multi-drug resistant mutant subtype f hiv protease complexed with tl-3 inhibitor
Author: m. sanches, s. krauchenco, n. h. martins, a. gustchina, a. wlodawer, i. polikarpov
Keywords: multi-drug resistant mutant subtype f hiv protease, tl-3 inhibitor, non-b hiv protease
- 2p3n.pdb.
hydrolase 09-mar-07 2p3n
Mg
Title: thermotoga maritima impase tm1415
Author: k. a. stieglitz, m. f. roberts, w. li, b. stec
Keywords: inositol
- 2p3v.pdb.
hydrolase 09-mar-07 2p3v
Title: thermotoga maritima impase tm1415
Author: k. a. stieglitz, m. f. roberts, w. li, b. stec
Keywords: phosphatase, asymmetric tetramer
- 2p54.pdb.
transcription 14-mar-07 2p54
F
Title: a crystal structure of ppar alpha bound with src1 peptide and gw735
Author: r. x. xu, h. e. xu, m. l. sierra, v. g. montana, m. h. lambert, p. m. pianetti
- 2p74.pdb.
hydrolase 19-mar-07 2p74
K
Title: ctx-m-9 class a beta-lactamase apo crystal structure at 0.88 angstrom resolution
Author: y. chen, r. bonnet, b. k. shoichet
Keywords: beta-lactamase, ultra-high resolution, acylation, esbl
- 2p8i.pdb.
oxidoreductase 22-mar-07 2p8i
Cl Se
Title: crystal structure of putative dioxygenase (yp_555069.1) from burkholderia xenovorans lb400 at 1.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative dioxygenase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2p8j.pdb.
transferase 22-mar-07 2p8j
Se
Title: crystal structure of s-adenosylmethionine-dependent methyltransferase (np_349143.1) from clostridium acetobutylicum at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: s-adenosylmethionine-dependent methyltransferase, methyltransferase domain, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2p8t.pdb.
structural genomics, unknown function 23-mar-07 2p8t
Title: hypothetical protein ph0730 from pyrococcus horikoshii ot3
Author: l. chen, m. zhao, a. ebihara, a. shinkai, s. kuramitsu, s. yokoyama, j. zhu, j. t. swindell, z-q. fu, j. chrzas, j. p. rose, b-c. wang, southeast collaboratory for structural genomics (secsg), riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2p91.pdb.
oxidoreductase 23-mar-07 2p91
Title: crystal structure of enoyl-[acyl-carrier-protein] reductase (nadh) from aquifex aeolicus vf5
Author: l. chen, y. li, a. ebihara, a. shinkai, s. kuramitsu, s. yokoyama, m. zhao, j. p. rose, b-c. wang, southeast collaboratory for structural genomics (secsg), riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2p9c.pdb.
oxidoreductase 24-mar-07 2p9c
Title: crystal structure of serine bound g336v mutant of e.coli phosphoglycerate dehydrogenase
Author: s. dey, j. c. sacchettini
Keywords: phosphoglycerate dehydrogenase
- 2p9e.pdb.
oxidoreductase 25-mar-07 2p9e
Title: crystal structure of g336v mutant of e.coli phosphoglycerate dehydrogenase
Author: s. dey, j. c. sacchettini
Keywords: g336v mutant, phosphoglycerate dehydrogenase, serine biosynthesis
- 2p9g.pdb.
oxidoreductase 25-mar-07 2p9g
Title: crystal structure of serine bound g336v,g337v double mutant of e.coli phosphoglycerate dehydrogenase
Author: s. dey, j. c. sacchettini
Keywords: serine biosynthesis, d-3-phosphoglycerate dehydrogenase, double mutation
- 2pa3.pdb.
oxidoreductase 27-mar-07 2pa3
Title: crystal structure of serine bound g336v mutant of e.coli phosphoglycerate dehydrogenase
Author: s. dey, j. c. sacchettini
Keywords: phosphoglycerate dehydrogenase, serine biosynthesis
- 2pa7.pdb.
isomerase 27-mar-07 2pa7
Cl
Title: structure of wild-type dtdp-4-keto-6-deoxy-d-glucose-3,4- ketoisomerase from aneurinibacillus thermoaerophilus in complex with tdp
Author: m. l. davis, j. t. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pae.pdb.
isomerase 27-mar-07 2pae
Title: structure of a h49n mutant dtdp-4-keto-6-deoxy-d-glucose-3, 4-ketoisomerase from aneurinibacillus thermoaerophilus in complex with tdp
Author: m. l. davis, j. t. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pak.pdb.
isomerase 27-mar-07 2pak
Title: structure of a h51n mutant dtdp-4-keto-6-deoxy-d-glucose-3, 4-ketoisomerase from aneurinibacillus thermoaerophilus complexed with tdp
Author: m. l. davis, j. t. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pam.pdb.
isomerase 27-mar-07 2pam
Title: structure of a h49n, h51n double mutant dtdp-4-keto-6-deoxy- d-glucose-3,4-ketoisomerase from aneurinibacillus thermoaerophilus complexed with tdp
Author: m. l. davis, j. t. thoden, h. m. holden
Keywords: s-layer biosynthesis, ketoisomerase
- 2pc1.pdb.
transferase 29-mar-07 2pc1
Se
Title: crystal structure of acetyltransferase gnat family (np_688560.1) from streptococcus agalactiae 2603 at 1.28 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: acetyltransferase gnat family, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pdo.pdb.
transferase 01-apr-07 2pdo
Zn Se
Title: crystal structure of the putative acetyltransferase of gnat family from shigella flexneri
Author: y. kim, h. li, d. holzle, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2pfd.pdb.
transferase, lyase 04-apr-07 2pfd
Se
Title: anisotropically refined structure of ftcd
Author: b. k. poon, x. chen, m. lu, f. a. quiocho, q. wang, j. ma
- 2pg3.pdb.
hydrolase 06-apr-07 2pg3
Zn Se
Title: crystal structure of hypothetical protein (yp_049261.1) from erwinia carotovora subsp. atroseptica scri1043 at 2.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pg4.pdb.
structural genomics, unknown function 06-apr-07 2pg4
Cl Se
Title: crystal structure of uncharacterized protein (np_147569.1) from aeropyrum pernix at 2.21 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pgc.pdb.
structural genomics, unknown function 09-apr-07 2pgc
Cl Se
Title: crystal structure of uncharacterized protein (jcvi_pep_1096685590403) from an environmental metagenome (unidentified marine microbe), sorcerer ii global ocean sampling experiment at 2.53 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: metagenomics, uncharacterized protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2pge.pdb.
lyase 09-apr-07 2pge
Title: crystal structure of menc from desulfotalea psychrophila lsv54
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: menc, osbs, 9393a, nysgxrc, psi-ii, structural genomics, protein structure initiative, new york structural genomix research consortium
- 2pgf.pdb.
hydrolase 09-apr-07 2pgf
Zn Se
Title: crystal structure of adenosine deaminase from plasmodium vivax in complex with adenosine
Author: e. a. merritt, e. t. larson, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, medical structural genomics of pathogenic protozoa consortium, msgpp, structural genomics of pathogenic protozoa consortium, sgpp, psi, protein structure initiative
- 2pgj.pdb.
hydrolase 09-apr-07 2pgj
Title: catalysis associated conformational changes revealed by human cd38 complexed with a non-hydrolyzable substrate analog
Author: q. liu, i. a. kriksunov, c. moreau, r. graeff, b. v. l. potter, h. c. lee, q. hao
Keywords: the catalytic pocket, conformational changes of the active site, substrate analog binding
- 2pgl.pdb.
hydrolase 09-apr-07 2pgl
Title: catalysis associated conformational changes revealed by human cd38 complexed with a non-hydrolyzable substrate analog
Author: q. liu, i. a. kriksunov, c. moreau, r. graeff, b. v. l. potter, h. c. lee, q. hao
Keywords: the catalytic pocket, conformational changes of the active site, substrate analog binding
- 2pgr.pdb.
hydrolase 10-apr-07 2pgr
Zn Se
Title: crystal structure of adenosine deaminase from plasmodium vivax in complex with pentostatin
Author: e. a. merritt, e. t. larson, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, medical structural genomics of pathogenic protozoa consortium, msgpp, structural genomics of pathogenic protozoa consortium, sgpp, psi, protein structure initiative
- 2pgs.pdb.
hydrolase 10-apr-07 2pgs
Se
Title: crystal structure of a putative deoxyguanosinetriphosphate triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a
Author: k. n. rao, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: new york structural genomix research consortium
- 2pgw.pdb.
isomerase 10-apr-07 2pgw
Se
Title: crystal structure of a putative muconate cycloisomerase from sinorhizobium meliloti 1021
Author: d. kumaran, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: muconate cycloisomerase, octamer, small molecule metabolism, psi-ii, nysgxrc, 9387a, structural genomics, protein structure initiative, new york structural genomix research consortium
- 2pgx.pdb.
structural genomics, unknown function 10-apr-07 2pgx
Se
Title: crystal structure of upf0341 protein yhiq from e. coli, northeast structural genomics target er585
Author: f. forouhar, m. su, j. seetharaman, h. janjua, y. fang, r. xiao, j. liu, m. c. baran, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2ph0.pdb.
structural genomics, unknown function 10-apr-07 2ph0
Se
Title: crystal structure of the q6d2t7_erwct protein from erwinia carotovora. nesg target ewr41.
Author: s. m. vorobiev, h. neely, j. seetharaman, c-x. chen, k. cunningham, l- c. ma, l. owens, y. fang, r. xiao, t. acton, t. g. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: erwct, nesg, ewr41, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2ph1.pdb.
ligand binding protein 10-apr-07 2ph1
Zn Se
Title: crystal structure of nucleotide-binding protein af2382 from archaeoglobus fulgidus, northeast structural genomics target gr165
Author: f. forouhar, m. abashidze, j. seetharaman, h. janjua, y. fang, r. xiao, j. liu, m. c. baran, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2phe.pdb.
transcription 11-apr-07 2phe
(NMR, 10 structures)
Title: model for vp16 binding to pc4
Author: h. r. a. jonker, r. w. wechselberger, r. boelens, g. e. folkers, r. kaptein
Keywords: vp16, transcription, cofactor, activator
- 2phg.pdb.
transcription 11-apr-07 2phg
(NMR, 10 structures)
Title: model for vp16 binding to tfiib
Author: h. r. a. jonker, r. w. wechselberger, r. boelens, g. e. folkers, r. kaptein
Keywords: vp16, transcription, activator
- 2php.pdb.
structural genomics, unknown function 11-apr-07 2php
Cl Se
Title: crystal structure of the c-terminal domain of protein mj0236 (y236_metja)
Author: s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-2, 10417a, nysgxrc, structural genomics, protein structure initiative, new york structural genomix research consortium
- 2phz.pdb.
transport protein 12-apr-07 2phz
Se
Title: crystal structure of iron-uptake system-binding protein feua from bacillus subtilis. northeast structural genomics target sr580.
Author: j. benach, h. neely, j. seetharaman, c. x. chen, k. cunningham, l-c. ma, h. janjua, r. xiao, m. baran, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: iron uptake, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2pig.pdb.
transferase 13-apr-07 2pig
Zn Se
Title: crystal structure of ydck from salmonella cholerae at 2.38 a resolution. northeast structural genomics target scr6
Author: j. benach, y. chen, s. m. vorobiev, j. seetharaman, c. k. ho, h. janjua, k. conover, l-c. ma, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: nesg, ydck, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2uvm.pdb.
transferase 12-mar-07 2uvm
Na
Title: structure of pkbalpha ph domain in complex with a novel inositol headgroup surrogate, benzene 1,2,3,4- tetrakisphosphate
Author: d. komander, s. j. mills, m. n. trusselle, s. t. safrany, d. m. f. van aalten, b. v. l. potter
Keywords: glycogen metabolism, kinase, cancer, inositol, apoptosis, transport, carbohydrate metabolism, ph domain, atp-binding, transferase, sugar transport
- 2uwd.pdb.
chaperone 20-mar-07 2uwd
Cl Mg
Title: inhibition of the hsp90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole, isoxazole amide analogs
Author: s. y. sharp, c. prodromou, k. boxall, m. v. powers, j. l. holmes, g. box, t. p. matthews, k. m. cheung, a. kalusa, k. james, a. hayes, a. hardcastle, b. dymock, p. a. brough, x. barril, j. e. cansfield, l. m. wright, a. surgenor, n. foloppe, w. aherne, l. pearl, k. jones, e. mcdonald, f. raynaud, s. eccles, m. drysdale, p. workman
Keywords: heat shock, atp-binding, phosphorylation, nucleotide-binding
- 2uwl.pdb.
hydrolase 22-mar-07 2uwl
Cl
Title: selective and dual action orally active inhibitors of thrombin and factor xa
Author: r. j. young, d. brown, c. l. burns-kurtis, c. chan, m. a. convery, j. a. hubbard, h. a. kelly, a. j. pateman, a. patikis, s. senger, g. p. shah, j. r. toomey, n. s. watson, p. zhou
Keywords: cleavage on pair of basic residues
- 2uwy.pdb.
transferase 23-mar-07 2uwy
Title: active site restructuring regulates ligand recognition in class a penicillin-binding proteins
Author: p. macheboeuf, a. m. diguilmi, v. job, t. vernet, o. dideberg, a. dessen
Keywords: acyltransferase, glycosyltransferase, cell wall, transferase, peptidoglycan
- 2uy2.pdb.
hydrolase 02-apr-07 2uy2
Title: sccts1_apo crystal structure
Author: r. hurtado-guerrero, d. m. f. van aalten
Keywords: polysaccharide degradation, chitinase activity and glycoside hydrolase family 18, glycoprotein, chitin-binding, chitin degradation, cazy, cell wall, hydrolase, glycosidase
- 2uy3.pdb.
hydrolase 02-apr-07 2uy3
Cl
Title: sccts1_8-chlorotheophylline crystal structure
Author: r. hurtado-guerrero, d. m. f. van aalten
Keywords: polysaccharide degradation, chitinase activity and glycoside hydrolase family 18, glycoprotein, chitin-binding, chitin degradation, cazy, cell wall, hydrolase, glycosidase
- 2uy4.pdb.
hydrolase 27-mar-07 2uy4
Title: sccts1_acetazolamide crystal structure
Author: r. hurtado-guerrero, d. m. f. van aalten
Keywords: polysaccharide degradation, chitinase activity and glycoside hydrolase family 18, glycoprotein, chitin-binding, chitin degradation, cazy, cell wall, hydrolase, glycosidase
- 2uy5.pdb.
hydrolase 02-apr-07 2uy5
Title: sccts1_kinetin crystal structure
Author: r. hurtado-guerrero, d. m. f. van aalten
Keywords: polysaccharide degradation, chitinase activity and glycoside hydrolase family 18, glycoprotein, chitin-binding, chitin degradation, cazy, cell wall, hydrolase, glycosidase
- 2yu1.pdb.
oxidoreductase 05-apr-07 2yu1
Fe
Title: crystal structure of hjhdm1a complexed with a-ketoglutarate
Author: z. han
- 2yu2.pdb.
oxidoreductase 05-apr-07 2yu2
Fe
Title: crystal structure of hjhdm1a without a-ketoglutarate
Author: z. han
- 2yu9.pdb.
transcription/dna/rna 06-apr-07 2yu9
Mg Zn
Title: rna polymerase ii elongation complex in 150 mm mg+2 with utp
Author: d. wang, d. a. bushnell, k. d. westover, c. d. kaplan, r. d. kornberg
Keywords: mrna, multiprotein complex, molecular machine, dna
- 2yvb.pdb.
hydrolase 10-apr-07 2yvb
Title: high resolution x-ray crystal structure of tetragonal hen egg white lysozyme
Author: m. d. naresh, s. m. jaimohan, v. v. kumar
- 2yvc.pdb.
cell adhesion 11-apr-07 2yvc
Title: crystal structure of the radixin ferm domain complexed with the nep cytoplasmic tail
Author: s. terawaki, k. kitano, t. hakoshima
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