Recent PDB releases or updates: week of 2 February 2007
- 1mf4.pdb.
hydrolase 09-aug-02 1mf4
Ca
Title: structure-based design of potent and selective inhibitors of phospholipase a2: crystal structure of the complex formed between phosholipase a2 from naja naja sagittifera and a designed peptide inhibitor at 1.9 a resolution
Author: r. k. singh, p. vikram, m. paramsivam, t. jabeen, s. sharma, j. makker, s. dey, p. kaur, a. srinivasan, t. p. singh
Keywords: structure, phospholipase a2, designed inhibitor
- 1wa4.pdb.
epimerase 18-oct-04 1wa4
Title: crystal structure of the m131f l135a evad double mutant
Author: a. b. merkel, j. h. naismith
Keywords: evad, amycolatopsis orientalis, double mutant, orf24
- 1wlk.pdb.
electron transport 28-jun-04 1wlk
Title: l122e mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Author: n. shibata, y. higuchi
Keywords: flavoprotein, fmn
- 1yon.pdb.
oxidoreductase 28-jan-05 1yon
Title: escherichia coli ketopantoate reductase in complex with 2- monophosphoadenosine-5'-diphosphate
Author: a. ciulli, c. m. c. lobley, k. l. tuck, g. williams, a. g. smith, t. l. blundell, c. abell
Keywords: nadp+ dependent, 2'-monophosphoadenosine-5'- diphosphate, pantothenate pathway, secondary alcohol dehydrogenase
- 2c7w.pdb.
growth factor 29-nov-05 2c7w
Title: crystal structure of human vascular endothelial growth factor-b: identification of amino acids important for angiogeninc activity
Author: s. iyer, p. d. scotney, a. d. nash, k. r. acharya
Keywords: angiogenesis, cysteine-knot motif, tyrosine kinase, ischemia, mitogen, glycoprotein, growth factor, heparin-binding
- 2dd4.pdb.
hydrolase 19-jan-06 2dd4
Title: thiocyanate hydrolase (scnase) from thiobacillus thioparus recombinant apo-enzyme
Author: t. arakawa, y. kawano, s. kataoka, y. katayama, n. kamiya, m. yohda, m. odaka
Keywords: cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrile hydratase, thiocyanate, carbonyl sulfide, claw setting, protein, enzyme, complex, model complex, non- corrin
- 2dd5.pdb.
hydrolase 19-jan-06 2dd5
Co
Title: thiocyanate hydrolase (scnase) from thiobacillus thioparus native holo-enzyme
Author: t. arakawa, y. kawano, s. kataoka, y. katayama, n. kamiya, m. yohda, m. odaka
Keywords: cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrile hydratase, thiocyanate, carbonyl sulfide, claw setting, protein, enzyme, complex, model complex, non- corrin
- 2dda.pdb.
toxin 25-jan-06 2dda
Na
Title: crystal structure of pseudechetoxin from pseudechis australis
Author: n. suzuki, y. yamazaki, z. fujimoto, t. morita, h. mizuno
Keywords: snake venom, cng channel
- 2ddb.pdb.
toxin 25-jan-06 2ddb
Na
Title: crystal structure of pseudecin from pseudechis porphyriacus
Author: n. suzuki, y. yamazaki, z. fujimoto, t. morita, h. mizuno
Keywords: snake venom, cng channel
- 2df1.pdb.
hydrolase 22-feb-06 2df1
Title: crystal structure of the extracellular domain of human cd38
Author: m. kukimoto-niino, o. nureki, k. murayama, m. shirouzu, t. katada, m. hara-yokoyama, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: cell sueface antigen, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2duk.pdb.
hydrolase 24-jul-06 2duk
Title: crystal structure of ms0616
Author: t. hosaka, a. nishino, k. -t. uchikubo, s. kishishita, k. murayama, m. shirouzu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dul.pdb.
transferase 24-jul-06 2dul
Title: crystal structure of trna g26 methyltransferase trm1 in apo form from pyrococcus horikoshii
Author: ihsanawati, s. kishishita, k. murayama, m. shirouzu, y. bessho, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: guanine 26, n(2),n(2)- dimethyltransferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dum.pdb.
structural genomics, unknown function 24-jul-06 2dum
Title: crystal structure of hypothetical protein, ph0823
Author: t. hosaka, s. kishishita, k. murayama, m. shirouzu, riken structural genomics/proteomics initiative (rsgi)
Keywords: putative universal protein a, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dun.pdb.
transferase 25-jul-06 2dun
(NMR, 20 structures)
Title: solution structure of brct domain of dna polymerase mu
Author: t. nagashima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2duv.pdb.
transferase 27-jul-06 2duv
Title: structure of cdk2 with a 3-hydroxychromones
Author: k. h. kim, j. lee, t. park, s. jeong, c. hong
Keywords: serine/threonine-protein kinase, cell division
- 2dv3.pdb.
transferase 28-jul-06 2dv3
Cl Na
Title: crystal structure of leu65 to arg mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dv4.pdb.
transferase 28-jul-06 2dv4
Cl
Title: crystal structure of leu65 to gln mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dv5.pdb.
transferase 28-jul-06 2dv5
Title: crystal structure of leu65 to ala mutant of diphthine synthase
Author: h. mizutani, y. matsuura, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dv7.pdb.
transferase 28-jul-06 2dv7
Title: crystal structure of lys187 to arg mutant of diphthine synthase
Author: h. mizutani, y. matsuura, k. saraboji, s. m. malathy sony, m. n. ponnuswamy, t. s. kumarevel, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2e22.pdb.
lyase 07-nov-06 2e22
Title: crystal structure of xanthan lyase in complex with mannose
Author: y. maruyama, b. mikami, w. hashimoto, k. murata
Keywords: mannose, polysaccharide lyase
- 2e24.pdb.
lyase 07-nov-06 2e24
Title: crystal structure of a mutant (r612a) of xanthan lyase
Author: y. maruyama, b. mikami, w. hashimoto, k. murata
Keywords: polysaccharide lyase
- 2e7f.pdb.
transferase 09-jan-07 2e7f
Ca
Title: 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 angsrom resolution
Author: t. i. doukov, c. l. drennan, h. hemmi, s. w. ragsdale
Keywords: corrionoid, vitamin b12, tim barrel
- 2e80.pdb.
oxidoreductase 15-jan-07 2e80
Y Fe Ca
Title: cytochrome c nitrite reductase from wolinella succinogenes with bound substrate nitrite
Author: o. einsle, p. m. h. kroneck
Keywords: nitrite reductase, substrate complex
- 2e81.pdb.
oxidoreductase 15-jan-07 2e81
Y Fe Ca
Title: cytochrome c nitrite reductase from wolinella succinogenes with bound intermediate hydroxylamine
Author: o. einsle, p. m. h. kroneck
Keywords: nitrite reductase, reaction intermediate
- 2ewg.pdb.
transferase 03-nov-05 2ewg
Mg
Title: t. brucei farnesyl diphosphate synthase complexed with minodronate
Author: r. cao, j. mao, y. gao, h. robinson, s. odeh, a. goddard, e. oldfield
- 2flt.pdb.
hydrolase 06-jan-06 2flt
Title: the x-ray structure of the cis-3-chloroacrylic acid dehalogenase cis-caad inactivated with (r)-oxirane-2- carboxylate
Author: r. m. de jong
Keywords: 4ot family, hydratase, covalent inhibitor, 4-oxalocrotonate tautomerase
- 2fpr.pdb.
hydrolase 17-jan-06 2fpr
Mg Zn Br Na
Title: crystal structure the n-terminal domain of e. coli hisb. apo mg model.
Author: e. s. rangarajan, m cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fps.pdb.
hydrolase 17-jan-06 2fps
Cl Zn Ca
Title: crystal structure of the n-terminal domain of e.coli hisb- apo ca model.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme. , structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpu.pdb.
hydrolase 17-jan-06 2fpu
Cl Mg Zn
Title: crystal structure of the n-terminal domain of e.coli hisb- complex with histidinol
Author: e. s. rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpw.pdb.
hydrolase 17-jan-06 2fpw
Zn Ca
Title: crystal structure of the n-terminal domain of e.coli hisb- phosphoaspartate intermediate.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme. , structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpx.pdb.
hydrolase 17-jan-06 2fpx
Mg Zn
Title: crystal structure of the n-terminal domain of e.coli hisb- sulfate complex.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fqd.pdb.
oxidoreductase 18-jan-06 2fqd
Cu
Title: crystal structures of e. coli laccase cueo under different copper binding situations
Author: x. li, z. wei, m. zhang, m. teng, w. gong
- 2fqe.pdb.
oxidoreductase 18-jan-06 2fqe
Cu Na
Title: crystal structures of e. coli laccase cueo under different copper binding situations
Author: x. li, z. wei, m. zhang, m. teng, w. gong
- 2fqf.pdb.
oxidoreductase 18-jan-06 2fqf
Cu
Title: crystal structures of e. coli laccase cueo under different copper binding situations
Author: x. li, z. wei, m. zhang, m. teng, w. gong
- 2fqg.pdb.
oxidoreductase 18-jan-06 2fqg
Cu Na
Title: crystal structures of e. coli laccase cueo under different copper binding situations
Author: x. li, z. wei, m. zhang, m. teng, w. gong
- 2ftd.pdb.
hydrolase 24-jan-06 2ftd
Title: crystal structure of cathepsin k complexed with 7-methyl- substituted azepan-3-one compound
Author: d. s. yamashita, z. baoguang
Keywords: sulfhydryl proteinase
- 2fu6.pdb.
hydrolase 26-jan-06 2fu6
Title: zinc-beta-lactamase l1 from stenotrophomonas maltophilia (apo form)
Author: l. nauton, g. garau, r. kahn, o. dideberg
Keywords: metallo, zn, lactamase
- 2fu7.pdb.
hydrolase 26-jan-06 2fu7
Cu
Title: zinc-beta-lactamase l1 from stenotrophomonas maltophilia (cu-substituted form)
Author: l. nauton, g. garau, r. kahn, o. dideberg
Keywords: zn, metallo, beta, lactamase
- 2fu8.pdb.
hydrolase 26-jan-06 2fu8
Zn
Title: zinc-beta-lactamase l1 from stenotrophomonas maltophilia (d- captopril complex)
Author: l. nauton, g. garau, r. kahn, o. dideberg
Keywords: zn, metallo, lactamase, inhibitor
- 2fu9.pdb.
hydrolase 26-jan-06 2fu9
Zn
Title: zinc-beta-lactamase l1 from stenotrophomonas maltophilia (mp2 inhibitor complex)
Author: l. nauton, g. garau, r. kahn, o. dideberg
Keywords: zn, metallo, beta, lactamase, inhibitor
- 2h0t.pdb.
hydrolase 15-may-06 2h0t
Title: crystal structure of the m69v e166a double mutant of shv-1 b-lactamase complexed to clavulanic acid
Author: f. van den akker, p. s. padayatti
Keywords: b-lactamase inhibitor
- 2h0y.pdb.
hydrolase 15-may-06 2h0y
Title: crystal structure of the m69v e166a double mutant of shv-1 b-lactamase complexed to sulbactam
Author: f. van den akker, p. s. padayatti
Keywords: b-lactamase inhibitor
- 2h10.pdb.
hydrolase 15-may-06 2h10
Title: crystal structure of the m69v e166a double mutant of shv-1 b-lactamase complexed to tazobactam
Author: f. van den akker, p. s. padayatti
Keywords: b-lactamase inhibitor
- 2h31.pdb.
ligase, lyase 21-may-06 2h31
Se
Title: crystal structure of human paics, a bifunctional carboxylase and synthetase in purine biosynthesis
Author: s. -x. li, y. -p. tong, x. -c. xie, s. -g. li, r. -c. bi
- 2h3r.pdb.
structural protein 23-may-06 2h3r
Se
Title: crystal structure of orf52 from murid herpesvirus 4 (muhv- 4) (murine gammaherpesvirus 68). northeast structural genomics consortium target mhr28b.
Author: j. benach, y. chen, h. janjua, r. xiao, k. cunningham, l. -c. ma, c. k. ho, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: mhr28b, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2h7d.pdb.
structural protein 02-jun-06 2h7d
(NMR, 20 structures)
Title: solution structure of the talin f3 domain in complex with a chimeric beta3 integrin-pip kinase peptide
Author: k. l. wegener
Keywords: alpha helix, beta sheet
- 2h7e.pdb.
structural protein 02-jun-06 2h7e
(NMR, minimized average structure)
Title: solution structure of the talin f3 domain in complex with a chimeric beta3 integrin-pip kinase peptide- minimized average structure
Author: k. l. wegener
Keywords: alpha helix, beta sheet
- 2h9i.pdb.
oxidoreductase 09-jun-06 2h9i
Title: mycobacterium tuberculosis inha bound with eth-nad adduct
Author: f. wang, j. c. sacchettini
Keywords: ethionamide, eth, tuberculosis
- 2htj.pdb.
transcription activator 25-jul-06 2htj
(NMR, minimized average structure)
Title: nmr structure of e.coli papi
Author: t. kawamura, h. zhou, l. u. k. le, f. w. dahlquist
Keywords: pap pili
- 2htm.pdb.
biosynthetic protein 26-jul-06 2htm
Se
Title: crystal structure of ttha0676 from thermus thermophilus hb8
Author: m. sugahara, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: thig, thermus thermophilus hb8, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hun.pdb.
lyase 26-jul-06 2hun
Title: crystal structure of hypothetical protein ph0414 from pyrococcus horikoshii ot3
Author: h. yamamoto, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2huq.pdb.
transferase 27-jul-06 2huq
Pt
Title: crystal structure of ph0725 from pyrococcus horikoshii ot3
Author: m. sugahara, p. karthe, t. s. kumarevel, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hut.pdb.
transferase 27-jul-06 2hut
Title: crystal structure of ph0725 from pyrococcus horikoshii ot3
Author: m. sugahara, k. saraboji, s. m. malathy sony, m. n. ponnuswamy, t. s. kumarevel, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2huv.pdb.
transferase 27-jul-06 2huv
Pt Na
Title: crystal structure of ph0725 from pyrococcus horikoshii ot3
Author: m. sugahara, k. saraboji, s. m. malathy sony, m. n. ponnuswamy, t. s. kumarevel, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hux.pdb.
transferase 27-jul-06 2hux
Pt
Title: crystal structure of ph0725 from pyrococcus horikoshii ot3
Author: m. sugahara, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hvb.pdb.
oxidoreductase 28-jul-06 2hvb
Fe
Title: crystal structure of hypothetical protein ph1083 from pyrococcus horikoshii ot3
Author: h. yamamoto, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: non-heme iron protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hx7.pdb.
electron transport 03-aug-06 2hx7
Cu
Title: crystal structure of cu(ii) azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "csphqgagm"
Author: m. j. banfield
Keywords: greek-key beta-barrel, loop mutagenesis
- 2hx8.pdb.
electron transport 03-aug-06 2hx8
Cu
Title: crystal structure of cu(i) azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "csphqgagm", at ph5
Author: m. j. banfield
Keywords: greek-key beta-barrel, loop mutagenesis
- 2hx9.pdb.
electron transport 03-aug-06 2hx9
Cu
Title: crystal structure of cu(i) azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "csphqgagm", at ph4
Author: m. j. banfield
Keywords: greek-key beta-barrel, loop mutagenesis
- 2hxa.pdb.
electron transport 03-aug-06 2hxa
Cu
Title: crystal structure of cu(i) azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "csphqgagm", at ph3.5
Author: m. j. banfield
Keywords: greek-key beta-barrel, loop mutagenesis
- 2i7t.pdb.
hydrolase, rna binding protein 31-aug-06 2i7t
Zn
Title: structure of human cpsf-73
Author: c. r. mandel, h. zhang, l. tong
Keywords: metallo-b-lactamase, pre-mrna processing, artemis, v(d)j recombination, double-strand break repair
- 2i7v.pdb.
hydrolase, rna binding protein 31-aug-06 2i7v
Zn
Title: structure of human cpsf-73
Author: c. r. mandel, h. zhang, l. tong
Keywords: metallo-b-lactamase, pre-mrna processing, artemis, v(d)j recombination, double-strand break repair
- 2i7x.pdb.
rna binding protein, protein binding 31-aug-06 2i7x
Title: structure of yeast cpsf-100 (ydh1p)
Author: c. r. mandel, h. zhang, d. gebauer, l. tong
Keywords: metallo-b-lactamase, pre-mrna processing, artemis, v(d)j recombination, double-strand break repair
- 2idc.pdb.
replication/chaperone 14-sep-06 2idc
Title: structure of the histone h3-asf1 chaperone interaction
Author: a. j. antczak, t. tsubota, p. d. kaufman, j. m. berger
Keywords: asf1, h3, histone, chaperone, chromatin
- 2ieg.pdb.
transferase 19-sep-06 2ieg
Cl
Title: crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Author: a. m. birch, p. w. kenny, n. g. oikonomakos, l. otterbein, p. schofield, p. r. o. whittamore, d. p. whalley, s. rowsell, r. pauptit, a. pannifer, j. breed, c. minshull
Keywords: glypho, diabetes
- 2iei.pdb.
transferase 19-sep-06 2iei
Cl
Title: crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Author: a. m. birch, p. w. kenny, n. g. oikonomakos, l. otterbein, p. schofield, p. r. o. whittamore, d. p. whalley, s. rowsell, r. pauptit, a. pannifer, j. breed, c. minshull
Keywords: diabetes, glucose
- 2iso.pdb.
transferase/dna 18-oct-06 2iso
Cl Mg F Na
Title: ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma- difluoromethylene triphosphate
Author: c. a. sucato, t. g. upton, b. a. kashemirov, v. martinek, y. xiang, w. a. beard
Keywords: polymerase, leaving-group
- 2isp.pdb.
transferase/dna 18-oct-06 2isp
Cl Mg Na
Title: ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma- methylene triphosphate
Author: c. a. sucato, t. g. upton, b. a. kashemirov, v. martinek, y. xiang, w. a. beard
Keywords: dna polymerase, leaving-group
- 2iuo.pdb.
lyase 06-jun-06 2iuo
Cl Br
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m. anderson
Keywords: lyase, cyanate degradation
- 2j2c.pdb.
hydrolase 16-aug-06 2j2c
Mg
Title: crystal structure of human cytosolic 5'-nucleotidase ii (nt5c2, cn-ii)
Author: k. wallden, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, m. hogbom, t. karlberg, t. kotenyova, p. loppnau, a. magnusdottir, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, j. weigelt, m. welin, p. nordlund
Keywords: allosteric enzyme, gmp-imp specific nucleotidase, high km 5-prime nucleotidase, cn-ii, nt5c2, hydrolase, polymorphism, cytosolic purine 5-prime nucleotidase
- 2j4g.pdb.
inhibitor 31-aug-06 2j4g
Title: bacteroides thetaiotaomicron gh84 o-glcnacase in complex with n-butyl-thiazoline inhibitor
Author: r. j. dennis, g. j. davies
Keywords: enzyme, thiazoline, inhibition, o-glcnacase, inhibitor
- 2j4w.pdb.
immune system 07-sep-06 2j4w
Title: structure of a plasmodium vivax apical membrane antigen 1- fab f8.12.19 complex
Author: s. igonet, b. vulliez-le normand, g. faure, m. m. riottot, c. h. m. kocken, a. w. thomas, g. a. bentley
Keywords: immunoglobulin c region, membrane, transmembrane, hypothetical protein, antibody cross-reactivity, surface active protein, malaria vaccine candidate, apical membrane antigen 1, immune system
- 2j5l.pdb.
immune system 18-sep-06 2j5l
Title: structure of a plasmodium falciparum apical membrane antigen 1-fab f8.12.19 complex
Author: s. igonet, b. vulliez-le normand, g. faure, m. m. riottot, c. kocken, a. w. thomas, g. a. bentley
Keywords: apical membrane antigen 1, hypothetical protein, immunoglobulin domain, membrane, merozoite, transmembrane, immune system, immunoglobulin c region, antibody cross-reactivity
- 2jae.pdb.
oxidoreductase 27-nov-06 2jae
Title: the structure of l-amino acid oxidase from rhodococcus opacus in the unbound state
Author: a. faust, k. niefind, w. hummel, d. schomburg
Keywords: dimerisation mode, l-amino acid oxidase, hydride transfer mechanism, gr2-family, flavoenzyme, fad containing
- 2jb1.pdb.
oxidoreductase 01-dec-06 2jb1
Title: the l-amino acid oxidase from rhodococcus opacus in complex with l-alanine
Author: a. faust, k. niefind, w. hummel, d. schomburg
Keywords: dimerisation mode, l-amino acid oxidase, hydride transfer mechanism, gr2-family, flavoenzyme, reduced fad, fad containing
- 2jb2.pdb.
oxidoreductase 01-dec-06 2jb2
Title: the structure of l-amino acid oxidase from rhodococcus opacus in complex with l-phenylalanine.
Author: a. faust, k. niefind, w. hummel, d. schomburg
Keywords: l-amino acid oxidase, oxidoreductase, non-planar fad, dimerisation mode, gr2-family, flavoenzyme, fad containing, hydride transfer mechanism
- 2jb3.pdb.
oxidoreductase 01-dec-06 2jb3
Title: the structure of l-amino acid oxidase from rhodococcus opacus in complex with o-aminobenzoate
Author: a. faust, k. niefind, w. hummel, d. schomburg
Keywords: hydride transfer mechanism, gr2-family, flavoenzyme, fad containing, oxidoreductase, inhibitor complex, dimerisation mode
- 2jc9.pdb.
hydrolase 21-dec-06 2jc9
Mg
Title: crystal structure of human cytosolic 5'-nucleotidase ii in complex with adenosine
Author: k. wallden, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, s. l. holmberg, m. hogbom, t. karlberg, t. kotenyova, a. magnusdottir, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, p. loppnau, j. weigelt, m. welin, p. nordlund
Keywords: gmp-imp specific nucleotidase, cn-ii, nt5c2, hydrolase, polymorphism, cytosolic purine 5-prime nucleotidase, allosteric enzyme, high km 5-prime nucleotidase
- 2jca.pdb.
transferase 21-dec-06 2jca
Na
Title: crystal structure of the streptomyces coelicolor holo- [acyl-carrier-protein] synthase (acps) at 2 a.
Author: p. dall'aglio, c. arthur, m. p. crump, j. crosby, a. t. hadfield
Keywords: magnesium, poliketide, transferase, metal-binding, lipid synthesis, phosphopantetheine arm, fatty acid biosynthesis, acyl carrier protein synthase
- 2jcm.pdb.
hydrolase 27-dec-06 2jcm
Mg F Be U
Title: crystal structure of human cytosolic 5'-nucleotidase ii in complex with beryllium trifluoride
Author: k. wallden, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, m. hogbom, t. karlberg, t. kotenyova, a. magnusdottir, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, p. loppnau, j. weigelt, m. welin, p. nordlund
Keywords: gmp-imp specific nucleotidase, cn-ii, nt5c2, hydrolase, polymorphism, cytosolic purine 5-prime nucleotidase, allosteric enzyme, high km 5-prime nucleotidase
- 2jcp.pdb.
lectin 03-jan-07 2jcp
Title: the hyaluronan binding domain of murine cd44
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: pyrrolidone carboxylic acid, transmembrane, sugar- binding, phosphorylation
- 2jcq.pdb.
lectin 03-jan-07 2jcq
Title: the hyaluronan binding domain of murine cd44 in a type a complex with an ha 8-mer
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: pyrrolidone carboxylic acid, transmembrane, sugar- binding, phosphorylation
- 2jcr.pdb.
lectin 03-jan-07 2jcr
Title: the hyaluronan binding domain of murine cd44 in a type b complex with an ha 8-mer
Author: s. banerji, a. j. wright, m. e. m. noble, d. j. mahoney, i. d. campbell, a. j. day, d. g. jackson
Keywords: pyrrolidone carboxylic acid, transmembrane, sugar- binding, phosphorylation
- 2jek.pdb.
structural genomics, unknown function 17-jan-07 2jek
Title: crystal structure of the conserved hypothetical protein rv1873 from mycobacterium tuberculosis at 1.38 a
Author: c. r. garen, m. m. cherney, e. m. bergmann, m. n. g. james, tb structural genomics consortium
Keywords: structural genomics, hypothetical protein, right-handed superhelix, tb structural genomics consortium, unknown function
- 2jeo.pdb.
transferase 18-jan-07 2jeo
Title: crystal structure of human uridine-cytidine kinase 1
Author: u. kosinska, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, u. b. ericsson, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, m. hogbom, i. johansson, t. karlberg, t. kotenyova, m. moche, m. e. p. nilsson, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, m. uppsten, a. g. thorsell, s. van den berg, j. weigelt, m. welin, p. nordlund
Keywords: kinase, transferase, atp-binding, nucleoside kinase, nucleotide-binding
- 2jer.pdb.
hydrolase 19-jan-07 2jer
Title: agmatine deiminase of enterococcus faecalis catalyzing its reaction.
Author: s. tavarez, j. l. llacer, v. rubio
Keywords: agmatine deiminase, tetramer, hydrolase, agdi, 5-fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct, agmatine iminohydrolase
- 2jn8.pdb.
structural genomics, unknown function 29-dec-06 2jn8
(NMR, 20 structures)
Title: solution nmr structure of q8zrj2 from salmonella typhimurium. northeast structural genomics target str65.
Author: j. m. aramini, j. r. cort, c. k. ho, k. cunningham, l. -c. ma, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: nesg, psi-2, autostructure, structural genomics, protein structure initiative, northeast structural genomics consortium
- 2nlb.pdb.
antimicrobial protein 20-oct-06 2nlb
Title: human beta-defensin-1 (mutant asn4ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin
- 2nlc.pdb.
antimicrobial protein 20-oct-06 2nlc
Title: human beta-defensin-1 (mutant ser8ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nld.pdb.
antimicrobial protein 20-oct-06 2nld
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nle.pdb.
antimicrobial protein 20-oct-06 2nle
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlf.pdb.
antimicrobial protein 20-oct-06 2nlf
Title: human beta-defensin-1 (mutant leu13glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlg.pdb.
antimicrobial protein 20-oct-06 2nlg
Title: human beta-defensin-1 (mutant lys22glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlh.pdb.
antimicrobial protein 20-oct-06 2nlh
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlp.pdb.
antimicrobial protein 20-oct-06 2nlp
Title: human beta-defensin-1 (mutant gln24glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlq.pdb.
antimicrobial protein 20-oct-06 2nlq
Title: human beta-defensin-1 (mutant lys31ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nls.pdb.
antimicrobial protein 20-oct-06 2nls
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2npi.pdb.
transcription 27-oct-06 2npi
Mg Se
Title: clp1-atp-pcf11 complex
Author: c. g. noble, b. beuth, i. a. taylor
Keywords: atp binding, ternary complex
- 2nq2.pdb.
metal transport 30-oct-06 2nq2
Title: an inward-facing conformation of a putative metal-chelate type abc transporter.
Author: h. p. pinkett, a. t. lee, p. lum, k. p. locher, d. c. rees
Keywords: atp-binding protein, nucleotide binding domain, transmembrane domain
- 2ns4.pdb.
rna binding protein 03-nov-06 2ns4
(NMR, 20 structures)
Title: solution structure of a beta-hairpin peptidomimetic inhibitor of the biv tat-tar interaction
Author: k. moehle, k. patora, j. a. robinson
Keywords: peptidomimetics, peptide structure, rna recognition, immunodeficiency virus, tar rna
- 2nsx.pdb.
hydrolase 06-nov-06 2nsx
Title: structure of acid-beta-glucosidase with pharmacological chaperone provides insight into gaucher disease
Author: r. l. lieberman, g. a. petsko, d. ringe
- 2nt1.pdb.
hydrolase 06-nov-06 2nt1
Title: structure of acid-beta-glucosidase at neutral ph
Author: r. l. lieberman, g. a. petsko, d. ringe
Keywords: cerezyme, glucosylceramide, gaucher disease
- 2ntj.pdb.
oxidoreductase 07-nov-06 2ntj
Title: mycobacterium tuberculosis inha bound with pth-nad adduct
Author: f. wang, j. c. sacchettini
Keywords: prothionamide, tuberculosis
- 2ntv.pdb.
oxidoreductase 08-nov-06 2ntv
Title: mycobacterium leprae inha bound with pth-nad adduct
Author: f. wang, j. c. sacchettini
Keywords: inha, prothionamide
- 2nvu.pdb.
protein turnover, ligase 13-nov-06 2nvu
Mg Zn
Title: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a trapped ubiquitin-like protein activation complex
Author: d. t. huang, h. w. hunt, m. zhuang, m. d. ohi, j. m. holton, b. a. schulman
Keywords: ubiquitin, nedd8, e1, e2, atp, conformational change, thioester, switch, adenylation
- 2nvv.pdb.
hydrolase 13-nov-06 2nvv
Zn Se
Title: crystal structure of the putative acetyl-coa hydrolase/transferase pg1013 from porphyromonas gingivalis, northeast structural genomics target pgr16.
Author: f. forouhar, h. neely, j. seetharaman, w. yong, c. k. ho, y. fang, k. cunningham, l. -c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nvw.pdb.
transcription 13-nov-06 2nvw
Title: crystal sctucture of transcriptional regulator gal80p from kluyveromymes lactis
Author: j. b. thoden, c. a. sellick, r. j. reece, h. m. holden
Keywords: galactose metabolism, repressor
- 2nwt.pdb.
structural genomics, unknown function 16-nov-06 2nwt
(NMR, 20 structures)
Title: nmr structure of protein upf0165 protein af_2212 from archaeoglobus fulgidus; northeast structural genomics consortium target gr83
Author: k. k. singarapu, d. k. sukumaran, d. parish, h. s. atreya, g. liu, a. eletsky, c. x. chen, m. jiang, k. cunningham, r. xiao, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: gft nmr, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nyt.pdb.
hydrolase 21-nov-06 2nyt
Zn
Title: the apobec2 crystal structure and functional implications for aid
Author: c. prochnow, r. bransteitter, m. klein, m. goodman, x. chen
Keywords: zinc-ion binding, apobec
- 2o09.pdb.
signaling protein 27-nov-06 2o09
Fe
Title: crystal structure of the h-nox domain from nostoc sp. pcc 7120
Author: x. ma, f. van den akker
Keywords: no, co, guanylyl cyclase
- 2o0c.pdb.
signaling protein 27-nov-06 2o0c
Fe
Title: crystal structure of the h-nox domain from nostoc sp. pcc 7120 complexed to no
Author: x. ma, f. van den akker
Keywords: no, co, guanylyl cyclase
- 2o0g.pdb.
signaling protein 27-nov-06 2o0g
Fe
Title: crystal structure of the h-nox domain from nostoc sp. pcc 7120 complexed to co
Author: x. ma, f. van den akker
Keywords: no, co, guanylyl cyclase
- 2o4d.pdb.
unknown function 04-dec-06 2o4d
Se
Title: crystal structure of a hypothetical protein from pseudomonas aeruginosa
Author: t. e. mcgrath, k. battaile, g. kisselman, v. romanov, j. wu-brown, c. virag, i. ng, m. kimber, a. m. edwards, e. f. pai, n. y. chirgadze
- 2o4j.pdb.
hormone/growth factor receptor 04-dec-06 2o4j
Title: crystal structure of rat vitamin d receptor ligand binding domain complexed with vitiii 17-20z and the nr2 box of drip 205
Author: j. l. vanhooke, m. m. benning, h. f. deluca
- 2o4r.pdb.
hormone/growth factor receptor 04-dec-06 2o4r
Title: crystal structure of rat vitamin d receptor ligand binding domain complexed with vitiii 17-20e and the nr2 box of drip 205
Author: j. l. vanhooke, m. m. benning, h. f. deluca
- 2o71.pdb.
apoptosis 09-dec-06 2o71
Title: crystal structure of raidd dd
Author: h. wu, h. park
Keywords: death domain
- 2o8s.pdb.
structural genomics, unknown function 12-dec-06 2o8s
Se
Title: crystal structure of the hypothetical protein agr_c_984 from agrobacterium tumefaciens, northeast structural genomics target atr120.
Author: j. seetharaman, f. forouhar, m. su, l. zhao, k. cunningham, l. -c. ma, h. janjua, r. xiao, j. liu, m. c. baran, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2o9i.pdb.
transcription 13-dec-06 2o9i
F
Title: crystal structure of the human pregnane x receptor lbd in complex with an src-1 coactivator peptide and t0901317
Author: y. xue, m. r. redinbo
Keywords: pregnane x receptor, pxr, t0901317
- 2oa5.pdb.
structural protein 14-dec-06 2oa5
Se
Title: crystal structure of orf52 from murid herpesvirus (muhv-4) (murine gammaherpesvirus 68) at 2.1 a resolution. northeast structural genomics consortium target mhr28b.
Author: j. benach, y. chen, j. seetharaman, h. janjua, r. xiao, k. cunningham, l. -c. ma, c. k. ho, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2oa6.pdb.
lyase 15-dec-06 2oa6
Mg
Title: aristolochene synthase from aspergillus terreus complexed with pyrophosphate
Author: e. y. shishova, l. di costanzo, d. e. cane, d. w. christianson
Keywords: magnesium, pyrophosphate, farnesyl diphosphate, cyclization
- 2oa7.pdb.
transferase 15-dec-06 2oa7
Title: mouse c14a glutathione-s-transferase mutant in complex with s-hexyl glutathione
Author: o. j. kyrieleis, g. mcmanus, t. j. mantle, a. r. khan
- 2ob1.pdb.
transferase 18-dec-06 2ob1
Title: ppm1 with 1,8-ans
Author: m. r. groves
Keywords: 8-ans
- 2ob2.pdb.
transferase 18-dec-06 2ob2
Title: ppm1 in the absence of 1,8-ans (cf 1jd)
Author: m. r. groves, i. b. mueller, x. kreplin, j. mueller-dieckmann
Keywords: 8-ans (as 1rjd)
- 2ob3.pdb.
hydrolase 18-dec-06 2ob3
Zn
Title: structure of phosphotriesterase mutant h257y/l303t
Author: j. kim, u. a. ramagopal, p. tsai, f. m. raushel, s. c. almo
Keywords: tim barrel, nerve agents
- 2oba.pdb.
lyase 18-dec-06 2oba
Zn Se
Title: pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase
Author: t. e. mcgrath, g. kisselman, k. battaile, v. romanov, j. wu-brown, j. guthrie, c. virag, k. mansoury, a. m. edwards, e. f. pai, n. y. chirgadze
Keywords: ptp synthase, ptps
- 2obl.pdb.
hydrolase 19-dec-06 2obl
Ca
Title: structural and biochemical analysis of a prototypical atpase from the type iii secretion system of pathogenic bacteria
Author: r. zarivach, m. vuckovic, w. deng, b. b. finlay, n. c. j. strynadka
- 2obm.pdb.
hydrolase 19-dec-06 2obm
Ca
Title: structural and biochemical analysis of a prototypical atpase from the type iii secretion system of pathogenic bacteria
Author: r. zarivach, m. vuckovic, w. deng, b. b. finlay, n. c. j. strynadka
- 2oby.pdb.
oxidoreductase 20-dec-06 2oby
Title: crystal structure of human p53 inducible oxidoreductase (tp53i3,pig3)
Author: s. porte, e. valencia, j. farres, i. fita, a. c. w. pike, n. shafqat, j. debreczeni, c. johansson, a. haroniti, o. gileadi, c. h. arrowsmith, a. edwards, j. weigelt, m. sundstrom, f. von delft, u. oppermann, x. pares
- 2oc3.pdb.
hydrolase 20-dec-06 2oc3
Title: crystal structure of the catalytic domain of human protein tyrosine phosphatase non-receptor type 18
Author: e. ugochukwu, a. barr, i. alfano, f. gorrec, c. umeano, p. savitsky, f. sobott, j. eswaran, e. papagrigoriou, j. e. debreczeni, a. turnbull, g. bunkoczi, m. sundstrom, c. h. arrowsmith, j. weigelt, a. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: receptor, human, structural genomics, structural genomics consortium, sgc
- 2ocd.pdb.
hydrolase 20-dec-06 2ocd
Se
Title: crystal structure of l-asparaginase i from vibrio cholerae o1 biovar eltor str. n16961
Author: b. nocek, r. wu, j. osipiuk, s. moy, y. kim, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: sad, mcsg, psi-2, structural genomics, protein structure initiative, midwest center for structural genomics
- 2odb.pdb.
protein binding 22-dec-06 2odb
Cl Mg
Title: the crystal structure of human cdc42 in complex with the crib domain of human p21-activated kinase 6 (pak6)
Author: e. ugochukwu, x. yang, j. elkins, m. soundararajan, a. c. w. pike, j. eswaran, n. burgess, j. e. debreczeni, m. sundstrom, c. arrowsmith, j. weigelt, a. edwards, o. gileadi, f. von delft, s. knapp, d. doyle, structural genomics consortium (sgc)
Keywords: crib, kinase, protein-protein complex , structural genomics, structural genomics consortium, sgc
- 2oe4.pdb.
hydrolase 28-dec-06 2oe4
Cl
Title: high pressure psuedo wild type t4 lysozyme
Author: m. d. collins, m. l. quillin, b. w. matthews, s. m. gruner
Keywords: t4 lyzoyme
- 2oe7.pdb.
hydrolase 28-dec-06 2oe7
Cl
Title: high-pressure t4 lysozyme
Author: m. d. collins, m. l. quillin, b. w. matthews, s. m. gruner
Keywords: t4 lysozyme
- 2oe9.pdb.
hydrolase 28-dec-06 2oe9
Cl
Title: high-pressure structure of pseudo-wt t4 lysozyme
Author: m. d. collins, m. l. quillin, b. w. matthews, s. m. gruner
Keywords: t4 lysozyme
- 2oea.pdb.
hydrolase 28-dec-06 2oea
Cl
Title: high-pressure structure of pseudo-wt t4 lysozyme
Author: m. d. collins, m. l. quillin, b. w. matthews, s. m. gruner
Keywords: t4 lysozyme
- 2oeb.pdb.
structural genomics, unknown function 28-dec-06 2oeb
Title: the crystal structure of gene product af1862 from archaeoglobus fulgidus
Author: r. zhang, e. evdokimova, o. kagan, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: unknown function, psi-2, mcsg, structural genomics, protein structure initiative, midwest center for structural genomics
- 2oed.pdb.
immune system 29-dec-06 2oed
(NMR)
Title: gb3 solution structure obtained by refinement of x-ray structure with dipolar couplings
Author: t. s. ulmer, b. e. ramirez, f. delaglio, a. bax, a. grishaev
Keywords: residual dipolar couplings
- 2oee.pdb.
structural genomics, unknown function 29-dec-06 2oee
Ca Se
Title: yhea from bacillus subtilis
Author: t. a. binkowski, m. borovilos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics
- 2oeq.pdb.
structural genomics, unknown function 31-dec-06 2oeq
Se
Title: protein of unknown function (duf964) from bacillus stearothermophilus
Author: y. kim, r. wu, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2oer.pdb.
transcription 31-dec-06 2oer
Se
Title: probable transcriptional regulator from pseudomonas aeruginosa
Author: y. kim, t. skarina, o. kagan, a. edwards, a. savchenko, a. jochimiak, midwest center for structural genomics (mcsg)
Keywords: alpha-beta, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2oez.pdb.
structural genomics, unknown function 02-jan-07 2oez
Se
Title: protein of unknown function (duf1342) from vibrio parahaemolyticus
Author: y. kim, l. volkart, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: alpha-structure, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2of7.pdb.
transcription 02-jan-07 2of7
Se
Title: structural genomics, the crystal structure of a tetr-family transcriptional regulator from streptomyces coelicolor a3
Author: k. tan, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: tetr-family transcriptional regulator, streptomyces coelicolor a3, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2ogk.pdb.
structural genomics, unknown function 05-jan-07 2ogk
Title: crystal structure of a conserved hypothetical protein from archaeglobus fulgidus
Author: k. n. rao, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: conserved hypothetical protein, archaeglobus fulgidus, 10077d, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2oik.pdb.
structural genomics, unknown function 11-jan-07 2oik
Cl Zn Se
Title: crystal structure of histidine triad (hit) protein (yp_546612.1) from methylobacillus flagellatus kt at 1.65 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: histidine triad (hit) protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2oj2.pdb.
signaling protein,transferase/inhibitor 12-jan-07 2oj2
(NMR, 20 structures)
Title: nmr structure analysis of the hematopoetic cell kinase sh3 domain complexed with an artificial high affinity ligand (pd1)
Author: h. schmidt, s. hoffmann, t. tran, m. stoldt, t. stangler, k. wiesehan, d. willbold
- 2oj4.pdb.
signaling protein inhibitor 12-jan-07 2oj4
Title: crystal structure of rgs3 rgs domain
Author: e. boura, t. obsil
- 2ojd.pdb.
oxidoreductase 12-jan-07 2ojd
Fe
Title: structural analysis of cyp2r1 in complex with vitamin d3
Author: n. v. strushkevich, j. min, p. loppnau, w. tempel, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, a. n. plotnikov, s. a. usanov, g. jones, h. park, structural genomics consortium (sgc)
Keywords: vitamin d, vitamin s 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, sgc
- 2ojv.pdb.
metal binding protein, oxidoreductase 15-jan-07 2ojv
I Fe Ca
Title: crystal structure of a ternary complex of goat lactoperoxidase with cyanide and iodide ions at 2.4 a resolution
Author: a. k. singh, n. singh, s. b. singh, s. sharma, p. kaur, t. p. singh
Keywords: complex, heam
- 2okc.pdb.
transferase 16-jan-07 2okc
Cl Se
Title: crystal structure of type i restriction enzyme stysji m protein (np_813429.1) from bacteriodes thetaiotaomicron vpi-5482 at 2.20 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: n-6 dna methylase, type i restriction enzyme stysji m protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2okf.pdb.
structural genomics, unknown function 16-jan-07 2okf
Cl Se
Title: crystal structure of fdxn element excision controlling factor protein (yp_323815.1) from anabaena variabilis atcc 29413 at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: xish protein, fdxn element excision controlling factor protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2okg.pdb.
transcription 16-jan-07 2okg
Cl Se
Title: structure of effector binding domain of central glycolytic gene regulator (cggr) from b. subtilis
Author: p. rezacova, s. f. moy, a. joachimiak, z. otwinowski, midwest center for structural genomics (mcsg)
Keywords: rossmann-like fold, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2okt.pdb.
ligase 17-jan-07 2okt
Title: crystal structure of o-succinylbenzoic acid synthetase from staphylococcus aureus, ligand-free form
Author: y. patskovsky, r. toro, v. malashkevich, j. m. sauder, s. ozyurt, d. smith, m. dickey, m. maletic, a. powell, t. gheyi, s. r. wasserman, j. gerlt, s. c. almo, s. k. burley, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc
- 2okv.pdb.
hydrolase 17-jan-07 2okv
Mg
Title: c-myc dna unwinding element binding protein
Author: b. bae, s. k. nair
Keywords: due, atpase, trna deacylase
- 2okz.pdb.
protein fibril 18-jan-07 2okz
Title: mvggvv peptide derived from alzheimer's a-beta
Author: m. r. sawaya, s. sambashivan, d. eisenberg
- 2ol9.pdb.
protein fibril 18-jan-07 2ol9
Title: peptide corresponding to residues 170-175 of human prion
Author: m. a. apostol, m. r sawaya, d. eisenberg
Keywords: beta sheet
- 2olm.pdb.
hydrolase regulator 19-jan-07 2olm
Zn U
Title: arfgap domain of hiv-1 rev binding protein
Author: y. tong, w. tempel, l. shen, s. dimov, r. landry, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: gtpase-activating protein, rev-interacting protein, hiv, human immunodeficiency virus, aids, nucleoporin, zinc, structural genomics, structural genomics consortium, sgc
- 2olx.pdb.
protein fibril 19-jan-07 2olx
Title: structure of nnqq peptide from yeast prion sup35
Author: r. nelson, m. r. sawaya, d. eisenberg
Keywords: glutamine zipper, polar zipper, asparagine zipper
- 2omm.pdb.
protein fibril 22-jan-07 2omm
Title: gnnqqny peptide corresponding to residues 7-13 of yeast prion sup35
Author: m. r. sawaya, r. nelson, d. eisenberg
Keywords: glutamine zipper, polar zipper, asparagine zipper
- 2omo.pdb.
oxidoreductase 22-jan-07 2omo
Se
Title: putative antibiotic biosynthesis monooxygenase from nitrosomonas europaea
Author: j. osipiuk, e. evdokimova, o. kagan, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc6266, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2omp.pdb.
protein fibril 22-jan-07 2omp
Title: lyqlen peptide derived from human insulin chain a, residues 13-18
Author: m. i. ivanova, m. r. sawaya, d. eisenberg
Keywords: antiparallel beta-sheet
- 2omq.pdb.
protein fibril 22-jan-07 2omq
Title: vealyl peptide derived from human insulin chain b, residues 12-17
Author: m. ivanova, m. r. sawaya, d. eisenberg
Keywords: anti-parallel beta-sheet
- 2on9.pdb.
protein fibril 23-jan-07 2on9
Title: structure of an amyloid forming peptide vqivyk from the repeat region of tau
Author: s. sambashivan, m. r. sawaya, d. eisenberg
Keywords: steric zipper
- 2ona.pdb.
protein fibril 23-jan-07 2ona
Title: mvggvv peptide derived from alzheimer's a-beta, residues 35- 40
Author: s. sambashivan, m. r. sawaya, d. eisenberg
Keywords: beta sheet
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www.sdsc.edu/CCMS