Recent PDB releases or updates: week of 12 January 2007

• 1gnv.pdb. hydrolase 10-oct-01 1gnv
  Title: calcium independent subtilisin bpn' mutant
  Author: o. almog, g. l. gilliland
  Keywords: serine proteinase
  
• 1t6y.pdb. signaling protein,transferase 07-may-04 1t6y
  Title: crystal structure of adp, amp, and fmn bound tm379
  Author: d. h. shin, w. wang, r. kim, h. yokota, s. -h. kim, berkeley structural genomics center (bsgc)
  Keywords: bsgc structure funded by nih, protein structure initiative, psi, berkeley structural genomics center, psi, protein structure initiative
  
• 1vh5.pdb. structural genomics, unknown function 01-dec-03 1vh5
  Title: crystal structure of a putative thioesterase
  Author: structural genomix, s. k. burley, new york structural genomix research consortium (nysgxrc)
  Keywords: psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
  
• 2bkb.pdb. oxidoreductase 14-feb-05 2bkb Fe
  Title: q69e-fesod
  Author: e. yikilmaz, d. w. rodgers, a. -f. miller
  Keywords: iron redox tuning, h-bond network, mutant, oxidoreductase
  
• 2bkm.pdb. oxygen storage 08-feb-06 2bkm Fe
  Title: crystal structure of the truncated hemoglobin from geobacillus stearothermophilus
  Author: a. ilari, p. kjelgaard, c. von wachenfeldt, a. boffi, e. chiancone
  Keywords: oxygen transport, transport, oxygen storage
  
• 2bze.pdb. transcription regulation 15-aug-05 2bze (NMR, 25 structures)
  Title: nmr structure of human rtf1 plus3 domain.
  Author: v. truffault, t. diercks, e. ab, r. n. de jong, m. daniels, r. kaptein, g. e. folkers
  Keywords: transcription, elongation, paf1 complex, histone h3 methylation, h2b ubiquitination, cdc73, leo1, ctr9, plus3 domain, transcription regulation
  
• 2bzr.pdb. transferase 14-jul-05 2bzr
  Title: crystal structure of accd5 (rv3280), an acyl-coa carboxylase beta-subunit from mycobacterium tuberculosis
  Author: s. j. holton
  Keywords: fatty acid biosynthesis, accase, ligase, transferase
  
• 2bzx.pdb. sh3 domain 22-aug-05 2bzx
  Title: atomic model of crkl-sh3c monomer
  Author: m. harkiolaki, r. j. gilbert, e. y. jones, s. m. feller
  Keywords: sh3c,monomer,native,nuclear export, sh3 domain
  
• 2bzy.pdb. sh3 domain 22-aug-05 2bzy
  Title: homodimer of crkl-sh3c domain
  Author: m. harkiolaki, r. j. gilbert, e. y. jones, s. m. feller
  Keywords: crkl, sh3 domain, dimer, nuclear export, sh3 domain
  
• 2c0l.pdb. transport protein/receptor complex 05-sep-05 2c0l
  Title: tpr domain of human pex5p in complex with human mscp2
  Author: w. a. stanley, p. kursula, m. wilmanns
  Keywords: transit peptide, transport protein/receptor complex
  
• 2c0m.pdb. transport protein 05-sep-05 2c0m
  Title: apo form of the tpr domain of the pex5p receptor
  Author: w. a. stanley, p. kursula, m. wilmanns
  Keywords: transport, import receptor complex, peroxisome, disease mutation, protein transport, zellweger syndrome, transport protein
  
• 2cap.pdb. transport protein 21-dec-05 2cap
  Title: serendipitous discovery and x-ray structure of a human phosphate binding apolipoprotein
  Author: r. morales, a. berna, p. carpentier, c. contreras-martel, f. renault, m. nicodeme, m. -l. chesne-seck, f. bernier, j. dupuy, c. schaeffer, h. diemer, a. van-dorsselaer, j. c. fontecilla-camps, p. masson, d. rochu, e. chabriere
  Keywords: atherosclerosis, hdl, missing gene, paraoxonase, phosphatemia, transport protein
  
• 2cb1.pdb. lyase 28-dec-05 2cb1
  Title: crystal structure of o-actetyl homoserine sulfhydrylase from thermus thermophilus hb8,oah2.
  Author: t. imagawa, h. utsunomiya, h. tsuge, a. ebihara, m. kanagawa, n. nakagawa, c. kuroishi, y. agari, s. kuramitsu, s. yokoyama
  Keywords: sulfhydrylase, homoserine, lyase
  
• 2ckf.pdb. oxidoreductase 18-apr-06 2ckf Fe
  Title: crystal structure of the terminal component of the pah- hydroxylating dioxygenase from sphingomonas sp chy-1
  Author: j. jakoncic, c. meyer, y. jouanneau, v. stojanoff
  Keywords: pyrene dioxygenase, ring- hydroxylating dioxygenase, high-molecular-weight polycyclic aromatic hydrocarbons, oxidoreductase
  
• 2clv.pdb. immune system 02-may-06 2clv
  Title: mhc class i natural mutant h-2kbm8 heavy chain complexed with beta-2 microglobulin and pbm8 peptide
  Author: c. mazza, n. auphan-anezin, a. guimezanes, g. a. barrett-wilt, f. montero-julian, a. roussel, d. f. hunt, a. m. schmitt-verhulst, b. malissen
  Keywords: immune system, immunoglobulin domain, glycoprotein, transmembrane, alloreactivity, mhc i, h-2kbm8, membrane, class i mhc, polymorphism
  
• 2clz.pdb. immune system 03-may-06 2clz
  Title: mhc class i natural mutant h-2kbm8 heavy chain complexed with beta-2 microglobulin and pbm1 peptide
  Author: c. mazza, n. auphan-anezin, a. guimezanes, g. a. barrett-wilt, f. montero-julian, a. roussel, d. f. hunt, a. m. schmitt-verhulst, b. malissen
  Keywords: immune system, immunoglobulin domain, glycoprotein, transmembrane, alloreactivity, mhc i, h-2kbm8, membrane, class i mhc, polymorphism
  
• 2cm5.pdb. protein transport 21-apr-06 2cm5 Ca Se
  Title: crystal structure of the c2b domain of rabphilin
  Author: c. schlicker, p. montaville, g. m. sheldrick, s. becker
  Keywords: rabphilin3a, ca2+ binding, metal-binding, protein transport, synaptic exocytosis, c2a-c2b linker fragment, c2b, zinc, synapse, c2 domain, transport
  
• 2cm6.pdb. protein transport 04-may-06 2cm6 Ca
  Title: crystal structure of the c2b domain of rabphilin3a
  Author: c. schlicker, p. montaville, g. m. sheldrick, s. becker
  Keywords: rabphilin3a, ca2+ binding, metal-binding, protein transport, synaptic exocytosis, c2a-c2b linker fragment, c2b, zinc, synapse, c2 domain, transport
  
• 2cn0.pdb. hydrolase 17-may-06 2cn0 F Na Ca
  Title: complex of recombinant human thrombin with a designed inhibitor
  Author: a. hoffmann-roder, e. schweizer, j. egger, p. seiler, u. obst-sander, b. wagner, m. kansy, d. w. banner, f. diederich
  Keywords: blood coagulation, calcium-binding, glycoprotein, hydrolase, serine protease, serine protease inhibitor complex
  
• 2cn4.pdb. transport protein 18-may-06 2cn4 Fe
  Title: the crystal structure of the secreted dimeric form of the hemophore hasa reveals a domain swapping with an exchanged heme ligand
  Author: m. czjzek, s. letoffe, c. wandersman, m. delepierre, a. lecroisey, n. izadi-pruneyre
  Keywords: transport protein, heme, iron, dimeric form, metal-binding
  
• 2cn8.pdb. transferase 18-may-06 2cn8 Mg
  Title: crystal structure of human chk2 in complex with debromohymenialdisine
  Author: a. w. oliver, l. h. pearl
  Keywords: nucleotide-binding, hypothetical protein
  
• 2cnb.pdb. epimerase 18-may-06 2cnb F
  Title: trypanosoma brucei udp-galactose-4-epimerase in ternary complex with nad and the substrate analogue udp-4-deoxy-4- fluoro-alpha-d-galactose
  Author: m. s. alphey, m. a. j. ferguson, w. n. hunter
  Keywords: udp-galactose-4-epimerase, nad, isomerase, trypanosoma brucei, udp-4-deoxy- 4-fluoro-alpha-d-galactose
  
• 2dcf.pdb. hydrolase 06-jan-06 2dcf
  Title: crystal structure of 6-aminohexanoate-dimer hydrolase s112a/g181d/h266n mutant with substrate
  Author: t. ohki, n. shibata, y. higuchi, m. takeo, s. negoro
  
  
• 2dst.pdb. structural genomics, unknown function 06-jul-06 2dst
  Title: crystal structure analysis of tt1977
  Author: y. xie, s. kishisita, k. murayama, m. shirozu, l. chen, z. j. liu, b. c. wang, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2dy4.pdb. transferase/dna 06-sep-06 2dy4 Se
  Title: crystal structure of rb69 gp43 in complex with dna containing thymine glycol
  Author: p. aller, m. a. rould, m. hogg, s. s. wallace, s. doublie
  Keywords: dna lesion, thymine glycol, oxidative thymine lesion
  
• 2f9v.pdb. viral protein 06-dec-05 2f9v Zn
  Title: hcv ns3 protease domain with ns4a peptide and a ketoamide inhibitor with p1 and p2 cyclopropylalannines
  Author: s. l. bogen, s. ruan, r. liu, s. agrawal, j. pichardo, a. prongay, b. baroudy, a. saksena, v. girijavallabhan, f. g. njoroge
  Keywords: hepatitis c protease, ns3 protease, ketoamide inhibitor
  
• 2fbh.pdb. transcription 09-dec-05 2fbh Hg Zn
  Title: the crystal structure of transcriptional regulator pa3341
  Author: v. v. lunin, e. evdokimova, m. kudritska, j. osipiuk, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
  Keywords: transcription regulator, apc5857, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
  
• 2fj1.pdb. transcription regulator 30-dec-05 2fj1 Cl Ni
  Title: crystal structure analysis of tet repressor (class d) in complex with 7-chlortetracycline-nickel(ii)
  Author: p. orth, w. saenger, g. j. palm, w. hinrichs
  Keywords: helix-turn-helix, metal coordination
  
• 2fk5.pdb. lyase 04-jan-06 2fk5 Cl
  Title: crystal structure of l-fuculose-1-phosphate aldolase from thermus thermophilus hb8
  Author: j. jeyakanthan, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: metal binding, fuculose phosphate, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 2fl1.pdb. fluorescent protein 05-jan-06 2fl1
  Title: crystal structure of red fluorescent protein from zoanthus, zrfp574, at 2.4a resolution
  Author: v. pletnev, n. pletneva, v. martynov, t. tikhonova, b. popov, s. pletnev
  Keywords: button polyp, zoanthus sp., crystal structure, chromophore, beta-can fold, beta barrel, tightly packed tetramer, intersubunit interface, fluorescent marker, emission maximum 574nm, zrfp574
  
• 2flf.pdb. lyase 06-jan-06 2flf
  Title: crystal structure of l-fuculose-1-phosphate aldolase from thermus thermophilus hb8
  Author: j. jeyakanthan, s. yokoyama, y. shiro, riken structural genomics/proteomics initiative (rsgi)
  Keywords: metal binding, fuculose phosphate, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 2fn5.pdb. signaling protein 10-jan-06 2fn5 (NMR, 20 structures)
  Title: nmr structure of the neurabin pdz domain (502-594)
  Author: b. dancheck, w. peti
  Keywords: neurabin
  
• 2fqh.pdb. structural genomics, unknown function 18-jan-06 2fqh (NMR, 20 structures)
  Title: nmr structure of hypothetical protein ta0938 from termoplasma acidophilum
  Author: d. monleon, v. esteve, a. yee, c. arrowsmith, b. celda, structural genomics consortium (sgc)
  Keywords: zn-binding, structural genomics consortium, sgc
  
• 2fr4.pdb. immune system/dna 18-jan-06 2fr4
  Title: structure of fab dna-1 complexed with a stem-loop dna ligand
  Author: j. j. tanner, z. ou
  Keywords: fab, immunoglobulin, anti-dna, anti-ssdna, autoantibody, stem-loop dna
  
• 2frm.pdb. oxidoreductase 19-jan-06 2frm
  Title: crystal structure of the lactate dehydrogenase from cryptosporidium parvum
  Author: o. a. senkovich, d. chattopadhyay
  
  
• 2fv2.pdb. transcription 28-jan-06 2fv2 Mn
  Title: crystal structure analysis of human rcd-1 conserved region
  Author: r. g. garces, w. gillon, e. f. pai
  
  
• 2g3r.pdb. cell cycle/transcription 20-feb-06 2g3r
  Title: crystal structure of 53bp1 tandem tudor domains at 1.2 a resolution
  Author: j. lee, m. v. botuyan, j. r. thompson, g. mer
  
  
• 2g44.pdb. hormone/growth factor receptor 21-feb-06 2g44
  Title: human estrogen receptor alpha ligand-binding domain in complex with obcp-1m-g and a glucocorticoid receptor interacting protein 1 nr box ii peptide
  Author: s. s. rajan, r. w. hsieh, s. k. sharma, g. l. greene
  Keywords: lbd, grip peptide
  
• 2g5m.pdb. protein binding 23-feb-06 2g5m (NMR, 20 structures)
  Title: spinophilin pdz domain
  Author: m. s. kelker, w. peti
  Keywords: pdz domain, cns, synaptic transmission
  
• 2gjk.pdb. hydrolase 31-mar-06 2gjk Mg
  Title: structural and functional insights into the human upf1 helicase core
  Author: z. cheng, d. muhlrad, r. parker, h. song
  Keywords: helicase, nmd
  
• 2gk6.pdb. hydrolase 31-mar-06 2gk6 Mg
  Title: structural and functional insights into the human upf1 helicase core
  Author: z. cheng, d. muhlrad, r. parker, h. song
  Keywords: helicase, nmd
  
• 2gk7.pdb. hydrolase 31-mar-06 2gk7
  Title: structural and functional insights into the human upf1 helicase core
  Author: z. cheng, d. muhlrad, r. parker, h. song
  Keywords: helicase, nmd
  
• 2gu2.pdb. hydrolase 28-apr-06 2gu2 Zn Se
  Title: crystal structure of an aspartoacylase from rattus norvegicus
  Author: e. bitto, g. e. wesenberg, g. n. phillips jr. , c. a. bingman, center for eukaryotic structural genomics (cesg)
  Keywords: aminoacylase-2, acy-2, acy2_rat, structural genomics, psi, protein structure initiative, center for eukaryotic structural genomics, cesg
  
• 2hdk.pdb. transferase 20-jun-06 2hdk
  Title: crystal structure of cys315ala-cys318ala mutant of human mitochondrial branched chain aminotransferase
  Author: n. h. yennawar, s. m. hutson
  
  
• 2hg8.pdb. transferase 26-jun-06 2hg8
  Title: crystal structure of cys315ala mutant of human mitochondrial branched chain aminotransferase complexed with its substrate mimic, n-methyl leucine.
  Author: n. h. yennawar, s. m. hutson
  
  
• 2hgw.pdb. transferase 27-jun-06 2hgw
  Title: crystal structure of cys318ala mutant of human mitochondrial branched chain aminotransferase
  Author: n. h. yennawar, s. m. hutson
  
  
• 2hgx.pdb. transferase 27-jun-06 2hgx
  Title: crystal structure of cys315ala mutant of human mitochondrial branched chain aminotransferase
  Author: n. h. yennawar, s. m. hutson
  
  
• 2hhf.pdb. transferase 28-jun-06 2hhf
  Title: x-ray crystal structure of oxidized human mitochondrial branched chain aminotransferase (hbcatm)
  Author: n. h. yennawar, s. m. hutson
  
  
• 2hjf.pdb. metal transport 30-jun-06 2hjf K
  Title: potassium channel kcsa-fab complex with tetrabutylammonium (tba)
  Author: v. jogini
  Keywords: ion transport
  
• 2hn7.pdb. immune system 12-jul-06 2hn7
  Title: hla-a*1101 in complex with hbv peptide homologue
  Author: t. blicher
  Keywords: major histocompatibility complex class i, mhc-i, human leukocyte antigen, hla, immunoglobulin family, hepatitis b virus, hbv
  
• 2hn8.pdb. viral protein 12-jul-06 2hn8 (NMR, 20 structures)
  Title: structural characterization and oligomerization of pb1-f2, a pro-apoptotic influenza a virus protein
  Author: k. bruns, n. studtrucker, a. sharma, t. fossen, d. mitzner, a. eissmann, u. tessmer, r. roder, p. henklein, v. wray, u. schubert
  
  
• 2hps.pdb. luminescent protein 17-jul-06 2hps Se
  Title: crystal structure of coelenterazine-binding protein from renilla muelleri
  Author: g. stepanyuk, z. j. liu, e. s. vysotski, j. lee, j. p. rose, b. c. wang
  Keywords: coelenterazine-binding
  
• 2hru.pdb. ligase 20-jul-06 2hru Mg
  Title: t. maritima purl complexed with adp
  Author: s. e. ealick, m. morar
  
  
• 2hry.pdb. ligase 20-jul-06 2hry Mg
  Title: t. maritima purl complexed with amppcp
  Author: s. e. ealick, m. morar
  
  
• 2hs0.pdb. ligase 20-jul-06 2hs0 Mg
  Title: t. maritima purl complexed with atp
  Author: s. e. ealick, m. morar
  
  
• 2hs3.pdb. ligase 21-jul-06 2hs3
  Title: t. maritima purl complexed with fgar
  Author: s. e. ealick, m. morar
  
  
• 2hs4.pdb. ligase 21-jul-06 2hs4 Mg
  Title: t. maritima purl complexed with fgar and amppcp
  Author: s. e. ealick, m. morar
  
  
• 2i0n.pdb. structural protein 10-aug-06 2i0n (NMR, 20 structures)
  Title: structure of dictyostelium discoideum myosin vii sh3 domain with adjacent proline rich region
  Author: q. wang, m. a. deloia, y. kang, c. litchke, m. a. titus, k. j. walters
  
  
• 2i1r.pdb. transferase 14-aug-06 2i1r F
  Title: novel thiazolones as hcv ns5b polymerase inhibitors: further designs, synthesis, sar and x-ray complex structure
  Author: n. yao, s. yan
  Keywords: ns5b, viral rna-directed rna polymerase, rdrp, allosteric inhibitor, hcv inhibitor complex
  
• 2i39.pdb. virus/viral protein 17-aug-06 2i39
  Title: crystal structure of vaccinia virus n1l protein
  Author: m. aoyagi, a. e. aleshin, b. stec, r. c. liddington
  
  
• 2i3c.pdb. hydrolase 17-aug-06 2i3c Zn Se
  Title: crystal structure of an aspartoacylase from homo sapiens
  Author: e. bitto, g. e. wesenberg, g. n. phillips jr. , j. g. mccoy, c. a. bingman, center for eukaryotic structural genomics (cesg)
  Keywords: n-acetyl-l-aspartate, zinc-dependent hydrolase, aspartoacylase family, aminoacylase-2, acy2, aspa, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
  
• 2i3s.pdb. cell cycle 20-aug-06 2i3s
  Title: bub3 complex with bub1 glebs motif
  Author: n. a. larsen, s. c. harrison
  Keywords: beta-propeller, glebs motif, mitotic spindle checkpoint
  
• 2i3t.pdb. cell cycle 20-aug-06 2i3t
  Title: bub3 complex with mad3 (bubr1) glebs motif
  Author: n. a. larsen, s. c. harrison
  Keywords: beta propeller, mitotic spindle checkpoint
  
• 2i47.pdb. hydrolase 21-aug-06 2i47 Zn
  Title: crystal structure of catalytic domain of tace with inhibitor
  Author: w. xu, j. s. condon, f. e. lovering
  Keywords: tace-inhibitor complex
  
• 2i4a.pdb. oxidoreductase 21-aug-06 2i4a
  Title: crystal structure of thioredoxin from the acidophile acetobacter aceti
  Author: c. m. starks, t. j. kappock
  Keywords: acidophile, disulfide exchange
  
• 2i83.pdb. cell adhesion 01-sep-06 2i83 (NMR, 20 structures)
  Title: hyaluronan-binding domain of cd44 in its ligand-bound form
  Author: m. takeda, s. ogino, r. umemoto, m. sakakura, m. kajiwara, k. n. sugahara, h. hayasaka, m. miyasaka, h. terasawa, i. shimada
  
  
• 2i9b.pdb. hydrolase 05-sep-06 2i9b
  Title: crystal structure of atf-urokinase receptor complex
  Author: j. lubkowski, c. barinka
  Keywords: kringle domain, growth factor-like domain
  
• 2idn.pdb. deoxyribonucleic acid 15-sep-06 2idn (NMR, 7 structures)
  Title: nmr structure of a new modified thrombin binding aptamer containing a 5'-5' inversion of polarity site
  Author: a. randazzo, l. martino, a. virno, l. mayol, c. giancola
  Keywords: tba, anticoagulant, dna, quadruplex, 5'-5'
  
• 2ieq.pdb. viral protein 19-sep-06 2ieq Na
  Title: core structure of s2 from the human coronavirus nl63 spike glycoprotein
  Author: j. liu
  
  
• 2ier.pdb. hydrolase 19-sep-06 2ier Zn
  Title: crystal structure of aquifex aeolicus lpxc complexed with uridine 5'-diphosphate
  Author: h. a. gennadios, d. w. christianson
  
  
• 2ies.pdb. hydrolase 19-sep-06 2ies Cl Zn
  Title: crystal structure of aquifex aeolicus lpxc complexed with pyrophosphate
  Author: h. a. gennadios, d. w. christianson
  
  
• 2ipy.pdb. lyase/rna 12-oct-06 2ipy
  Title: crystal structure of iron regulatory protein 1 in complex with ferritin h ire-rna
  Author: w. e. walden, a. i. selezneva, j. dupuy, a. volbeda, j. c. fontecilla- camps, e. c. theil, k. volz
  
  
• 2irv.pdb. membrane protein 16-oct-06 2irv
  Title: crystal structure of glpg, a rhomboid intramembrane serine protease
  Author: e. bibi, d. fass, a. ben-shem
  Keywords: cavity, ser-his dyad
  
• 2is1.pdb. hydrolase/dna 16-oct-06 2is1 Hg
  Title: crystal structure of uvrd-dna-so4 complex
  Author: w. yang, j. y. lee
  
  
• 2is2.pdb. hydrolase/dna 16-oct-06 2is2
  Title: crystal structure of uvrd-dna binary complex
  Author: w. yang, j. y. lee
  
  
• 2is4.pdb. hydrolase/dna 16-oct-06 2is4 Mg
  Title: crystal structure of uvrd-dna-adpnp ternary complex
  Author: w. yang, j. y. lee
  
  
• 2is6.pdb. hydrolase/dna 16-oct-06 2is6 Mg F
  Title: crystal structure of uvrd-dna-adpmgf3 ternary complex
  Author: w. yang, j. y. lee
  
  
• 2iup.pdb. oxidoreductase 07-jun-06 2iup
  Title: crystal structure of dithionite-reduced aromatic amine dehydrogenase (aadh) from alcaligenes faecalis
  Author: a. roujeinikova, n. scrutton, d. leys
  
  
• 2iuq.pdb. oxidoreductase 07-jun-06 2iuq
  Title: crystal structure of dithionite-reduced aromatic amine dehydrogenase (aadh) from alcaligenes faecalis in complex with tryptamine
  Author: a. roujeinikova, n. scrutton, d. leys
  
  
• 2iur.pdb. oxidoreductase 07-jun-06 2iur
  Title: crystal structure of n-quinol form of aromatic amine dehydrogenase (aadh) from alcaligenes faecalis, form a cocrystal
  Author: a. roujeinikova, n. scrutton, d. leys
  
  
• 2iuv.pdb. oxidoreductase 07-jun-06 2iuv
  Title: crystal structure of n-quinol form of aromatic amine dehydrogenase (aadh) from alcaligenes faecalis, form b
  Author: a. roujeinikova, n. scrutton, d. leys
  
  
• 2ivh.pdb. hydrolase 13-jun-06 2ivh Zn
  Title: crystal structure of the nuclease domain of cole7 (h545q mutant) in complex with an 18-bp duplex dna
  Author: y. t. wang, w. j. yang, c. l. li, l. g. doudeva, h. s. yuan
  Keywords: endonuclease, antimicrobial, metal-binding, hydrolase/dna complex, zinc, plasmid, nuclease, hydrolase, antibiotic
  
• 2ivk.pdb. hydrolase 14-jun-06 2ivk
  Title: crystal structure of the periplasmic endonuclease vvn complexed with a 16-bp dna
  Author: y. t. wang, w. j. yang, c. l. li, l. g. doudeva, h. s. yuan
  Keywords: endonuclease, dna hydrolysis, protein nucleic acid interactions, dna cleavage preference, hydrolase
  
• 2ix7.pdb. contractile protein/metal binding 07-jul-06 2ix7
  Title: structure of apo-calmodulin bound to unconventional myosin v
  Author: a. houdusse, j. f. gaucher, s. mui, e. krementsova, k. m. trybus, c. cohen
  Keywords: coiled coil, atp-binding, motor protein
  
• 2ixq.pdb. cell adhesion 10-jul-06 2ixq (NMR, regularized mean structure)
  Title: the solution structure of the invasive tip complex from afa-dr fibrils
  Author: e. cota, c. jones, p. simpson, h. altroff, k. l. anderson, l. du merle, j. guignot, a. servin, c. le bouguenec, h. mardon, s. matthews
  Keywords: afimbrial sheath, structural protein, donor strand complemented, cell adhesion, daf, afae, upec, daec, fimbria
  
• 2iy4.pdb. metal-binding protein 12-jul-06 2iy4 Fe
  Title: x-ray structure of dps from listeria monocytogenes
  Author: a. ilari, g. bellapadrona, s. stefanini, e. chiancone
  Keywords: iron storage, metal-binding, oxidative damage, dpslm (dna-binding protein from starved cells) from lister iron- incorporation, metal-binding protein
  
• 2iyl.pdb. cell cycle 18-jul-06 2iyl
  Title: structure of an ftsy:gdp complex
  Author: p. j. focia, d. m. freymann
  Keywords: ribonucleoprotein, nucleotide-binding, signal recognition particle, srp, gdp, ffh, ftsy, gtpase, rna-binding, gtp-binding, cell division, membrane, cell cycle
  
• 2j05.pdb. signal transduction 01-aug-06 2j05 Se
  Title: crystal structure of the rasgap sh3 domain at 1.5 angstrom resolution
  Author: b. ross, m. gajhede, o. kristensen
  Keywords: sh3 domain, sh2 domain, src homology 3, ras signaling pathway, gtpase activating protein, proto-oncogene, phosphorylation, disease mutation, signal transduction
  
• 2j06.pdb. signal transduction 01-aug-06 2j06 Se
  Title: crystal structure of the rasgap sh3 domain at 1.8 angstrom resolution
  Author: b. ross, m. gajhede, o. kristensen
  Keywords: sh3 domain, sh2 domain, src homology 3, ras signaling pathway, gtpase activating protein, proto-oncogene, phosphorylation, disease mutation, signal transduction
  
• 2j0e.pdb. hydrolase 02-aug-06 2j0e Hg K Zn
  Title: three dimensional structure and catalytic mechanism of 6- phosphogluconolactonase from trypanosoma brucei
  Author: m. delarue, n. duclert-savatier, e. miclet, a. haouz, d. giganti, j. ouazzani, p. lopez, m. nilges, v. stoven
  Keywords: pentose phosphate pathway, 6-phosphogluconolactonase, trypanosoma brucei, hydrolase, zinc binding site
  
• 2j0t.pdb. hydrolase 04-aug-06 2j0t Zn Ca
  Title: crystal structure of the catalytic domain of mmp-1 in complex with the inhibitory domain of timp-1
  Author: s. iyer, s. wei, k. brew, k. r. acharya
  Keywords: autocatalytic cleavage, collagenase, polymorphism, glycoprotein, metal-binding, tissue inhibitor of metalloproteinase
  
• 2j1o.pdb. transferase 15-aug-06 2j1o
  Title: geranylgeranyl diphosphate synthase from sinapis alba
  Author: d. p. kloer, r. welsch, p. beyer, g. e. schulz
  Keywords: multifunctional enzyme, carotenoid biosynthesis, isoprenyl transtransferase, isoprenoid diphosphate synthase, transit peptide, plastid, transferase, chloroplast
  
• 2j1p.pdb. transferase 15-aug-06 2j1p Se
  Title: geranylgeranyl diphosphate synthase from sinapis alba in complex with ggpp
  Author: d. p. kloer, r. welsch, p. beyer, g. e. schulz
  Keywords: multifunctional enzyme, carotenoid biosynthesis, isoprenyl transtransferase, isoprenoid diphosphate synthase, transit peptide, plastid, transferase, chloroplast, geranylgeranyl diphosphate
  
• 2j23.pdb. immune protein 16-aug-06 2j23
  Title: cross-reactivity and crystal structure of malassezia sympodialis thioredoxin (mala s 13), a member of a new pan- allergen family
  Author: a. limacher, a. g. glaser, c. meier, l. scapozza, r. crameri
  Keywords: immune protein, autoreactivity, cross-reactivity, ige, fungi, epitope, allergen, thioredoxin
  
• 2j24.pdb. isomerase 16-aug-06 2j24
  Title: the functional role of the conserved active site proline of triosephosphate isomerase
  Author: m. g. casteleijn, m. alahuhta, k. groebel, i. el-sayed, k. augustyns, a. m. lambeir, p. neubauer, r. k. wierenga
  Keywords: fatty acid biosynthesis, gluconeogenesis, lipid synthesis, atomic resolution, glycolysis, pentose shunt, point mutation, tim, loop7, isomerase, glycosome, tim-barrel
  
• 2j27.pdb. isomerase 16-aug-06 2j27
  Title: the functional role of the conserved active site proline of triosephosphate isomerase
  Author: m. g. casteleijn, m. alahuhta, k. groebel, i. el-sayed, k. augustyns, a. m. lambeir, p. neubauer, r. k. wierenga
  Keywords: protein engineering
  
• 2j28.pdb. protein/rna complex 16-aug-06 2j28 Mg (cryo-electron microscopy)
  Title: model of e. coli srp bound to 70s rncs
  Author: m. halic, m. blau, t. becker, t. mielke, m. r. pool, k. wild, i. sinning, r. beckmann
  Keywords: protein/rna complex, signal recognition particle
  
• 2j37.pdb. ribosome 18-aug-06 2j37 (cryo-electron microscopy)
  Title: model of mammalian srp bound to 80s rncs
  Author: m. halic, m. blau, t. becker, t. mielke, m. r. pool, k. wild, i. sinning, r. beckmann
  Keywords: srp, translation/rna
  
• 2j3h.pdb. oxidoreductase 21-aug-06 2j3h
  Title: crystal structure of arabidopsis thaliana double bond reductase (at5g16970)-apo form
  Author: b. youn, s. j. kim, s. g. moinuddin, c. lee, d. l. bedgar, a. r. harper, l. b. davin, n. g. lewis, c. kang
  Keywords: nadp, apo form, oxidoreductase, arabidopsis thaliana
  
• 2j3i.pdb. oxidoreductase 21-aug-06 2j3i
  Title: crystal structure of arabidopsis thaliana double bond reductase (at5g16970)-binary complex
  Author: b. youn, s. j. kim, s. g. moinuddin, c. lee, d. l. bedgar, a. r. harper, l. b. davin, n. g. lewis, c. kang
  Keywords: binary complex nadp, apo form, oxidoreductase, arabidopsis thaliana
  
• 2j3j.pdb. oxidoreductase 21-aug-06 2j3j
  Title: crystal structure of arabidopsis thaliana double bond reductase (at5g16970)-ternary complex i
  Author: b. youn, s. j. kim, s. g. moinuddin, c. lee, d. l. bedgar, a. r. harper, l. b. davin, n. g. lewis, c. kang
  Keywords: arabidopsis thaliana, nadp, oxidoreductase, ternary complex, double bond reductase (at5g16970)
  
• 2j3k.pdb. oxidoreductase 22-aug-06 2j3k
  Title: crystal structure of arabidopsis thaliana double bond reductase (at5g16970)-ternary complex ii
  Author: b. youn, s. j. kim, s. g. moinuddin, c. lee, d. l. bedgar, a. r. harper, l. b. davin, n. g. lewis, c. kang
  Keywords: 4-hydroxy-2- nonenal, nadp, oxidoreductase, ternary complex ii, double bond reductase (at5g16970)
  
• 2j9a.pdb. hydrolase 06-nov-06 2j9a Cl Zn
  Title: bllap in complex with microginin fr1
  Author: m. kraft, c. schleberger, j. weckesser, g. e. schulz
  Keywords: acetylation, aminopeptidase, microginin, microcystins, inhibitor complex hydrolase, metal-binding, protease
  
• 2j9l.pdb. ion channel 13-nov-06 2j9l Cl
  Title: cytoplasmic domain of the human chloride transporter clc-5 in complex with atp
  Author: s. meyer, s. savaresi, i. c. forster, r. dutzler
  Keywords: membrane, chloride, transport, cbs domain, ubl conjugation, chloride channel, disease mutation, ion channel, ion transport, transmembrane, chloride transporter, voltage-gated channel
  
• 2ja3.pdb. transport protein 21-nov-06 2ja3
  Title: cytoplasmic domain of the human chloride transporter clc-5 in complex with adp
  Author: s. meyer, s. savaresi, i. c. forster, r. dutzler
  Keywords: voltage-gated channel
  
• 2jal.pdb. hydrolase 29-nov-06 2jal Ca
  Title: beta-glucosidase from thermotoga maritima in complex with cyclophellitol
  Author: t. m. gloster, r. madsen, g. j. davies
  Keywords: glycosidase, glycoside hydrolase, cellulose degradation, carbohydrate metabolism, family 1, covalent, hydrolase, inhibitor
  
• 2jaq.pdb. transferase 30-nov-06 2jaq
  Title: structure of deoxyadenosine kinase from m. mycoides with bound dctp
  Author: m. welin, l. wang, s. eriksson, h. eklund
  Keywords: transferase, deoxyribonucleoside kinase
  
• 2jas.pdb. transferase 30-nov-06 2jas Mg
  Title: structure of deoxyadenosine kinase from m.mycoides with bound datp
  Author: m. welin, l. wang, s. eriksson, h. eklund
  Keywords: transferase, deoxyribonucleoside kinase
  
• 2jat.pdb. transferase 30-nov-06 2jat Mg
  Title: structure of deoxyadenosine kinase from m.mycoides with products dcmp and a flexible dcdp bound
  Author: m. welin, l. wang, s. eriksson, h. eklund
  Keywords: transferase, deoxyribonucleoside kinase
  
• 2jb9.pdb. transcription 05-dec-06 2jb9
  Title: phob response regulator receiver domain constitutively- active double mutant d10a and d53e.
  Author: c. ferrer-orta, r. arribas-bosacoma, s. -k. kim, a. g. blanco, p. j. b. pereira, f. x. gomis-ruth, b. l. wanner, m. coll, m. sola
  Keywords: phosphate transport, activation of the pho regulon, transcription, phosphorylation, gene regulation, alpha/beta doubly woun fold
  
• 2jba.pdb. transcription 05-dec-06 2jba Na
  Title: phob response regulator receiver domain constitutively- active double mutant d53a and y102c.
  Author: r. arribas-bosacoma, c. ferrer-orta, s. -k. kim, a. g. blanco, p. j. b. pereira, f. x. gomis-ruth, b. l. wanner, m. coll, m. sola
  Keywords: phosphate transport, activation of the pho regulon, transcription, phosphorylation, gene regulation, alpha/beta doubly woun fold
  
• 2jbw.pdb. hydrolase 14-dec-06 2jbw Na Se
  Title: crystal structure of the 2,6-dihydroxy-pseudo-oxynicotine hydrolase.
  Author: c. schleberger, p. sachelaru, r. brandsch, g. e. schulz
  Keywords: meta-cleavage pathway, retro- friedel-crafts acylation, nicotine degradation, hypothetical protein, plasmid, catalytic triad, c-c bond cleavage
  
• 2jc9.pdb. hydrolase 21-dec-06 2jc9 Mg
  Title: crystal structure of human cytosolic 5'-nucleotidase ii in complex with adenosine
  Author: k. wallden, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, s. l. holmberg, m. hogbom, t. karlberg, t. kotenyova, a. magnusdottir, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, p. loppnau, j. weigelt, m. welin, p. nordlund
  Keywords: gmp-imp specific nucleotidase, cn-ii, nt5c2, hydrolase, polymorphism, cytosolic purine 5-prime nucleotidase, allosteric enzyme, high km 5-prime nucleotidase
  
• 2jcn.pdb. apoptosis 27-dec-06 2jcn
  Title: the crystal structure of bak1 - a mitochondrial apoptosis regulator
  Author: m. moche, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, u. b. ericsson, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, i. johansson, t. karlberg, u. kosinska, t. kotenyova, s. lundgren, m. e. nilsson, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, m. upsten, a. g. thorsell, s. van den berg, j. weigelt, p. nordlund
  Keywords: oligomerization, cytochrome c release, membrane, apoptosis, polymorphism, transmembrane
  
• 2jn7.pdb. structural genomics, unknown function 28-dec-06 2jn7 (NMR, 10 structures)
  Title: northeast structural genomics consortium target er411
  Author: f. tian, j. prestegard, l. zhao, m. jiang, k. cunningham, l. ma, r. xiao, j. liu, m. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. monteline, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2nm1.pdb. toxin,hydrolase 20-oct-06 2nm1
  Title: structure of bont/b in complex with its protein receptor
  Author: r. jin, a. rummel, t. binz, a. t. brunger
  Keywords: botulism, synaptotagmin
  
• 2nn2.pdb. transcription 23-oct-06 2nn2
  Title: crystal structure of the btb domain from the lrf/zbtb7 transcriptional regulator
  Author: p. j. stogios, l. chen, g. g. prive
  Keywords: transcription repressor, zinc-finger protein, btb domain, candidate oncoprotein, poz domain
  
• 2nnu.pdb. transcription 24-oct-06 2nnu
  Title: crystal structure of the papillomavirus dna tethering complex e2:brd4
  Author: e. a. abbate, c. voitenleitner, m. r. botchan
  Keywords: helical peptide, three helix bundle, amphipathic helix
  
• 2nqg.pdb. hydrolase 31-oct-06 2nqg Ca
  Title: calpain 1 proteolytic core inactivated by wr18(s,s), an epoxysuccinyl-type inhibitor.
  Author: d. cuerrier, p. l. davies, r. l. campbell, t. moldoveanu
  Keywords: epoxysuccinyl, protease, peptidase, proteinase, inactivator, inhibitor
  
• 2nqi.pdb. hydrolase 31-oct-06 2nqi Ca
  Title: calpain 1 proteolytic core inactivated by wr13(r,r), an epoxysuccinyl-type inhibitor.
  Author: d. cuerrier, p. l. davies, r. l. campbell, t. moldoveanu
  Keywords: epoxysuccinyl, protease, peptidase, proteinase, inactivator, inhibitor
  
• 2ns1.pdb. structural genomics, unknown function 02-nov-06 2ns1
  Title: crystal structure of the e. coli ammonia channel amtb complexed with the signal transduction protein glnk
  Author: f. gruswitz, j. o'connell iii, r. m. stroud, center for structures of membrane proteins (csmp)
  Keywords: membrane protein, ammonia, channel, regulatory, inhibitor, signal protein, adp, bog, structural genomics, psi-2, protein structure initiative, center for structures of membrane proteins, csmp
  
• 2nsn.pdb. apoptosis 05-nov-06 2nsn
  Title: crystal structure of caspace activation and recruitment domain (card) of nod1
  Author: s. ramaswamy, n. p. coussens
  
  
• 2nuh.pdb. unknown function 09-nov-06 2nuh
  Title: crystal structure of cuta from the phytopathgen bacterium xylella fastidiosa
  Author: f. j. medrano, c. e. benedetti
  
  
• 2nvh.pdb. cytokine 12-nov-06 2nvh
  Title: determination of solvent content in cavities in interleukin- 1 using experimentally-phased electron density
  Author: m. l. quillin, b. w. matthews
  
  
• 2nwa.pdb. structural genomics, unknown function 14-nov-06 2nwa Se
  Title: crystal structure of the hypothetical protein ytmb from bacillus subtilis subsp. (subtilis str. 168), northeast structural genomics target sr466
  Author: w. zhou, f. forouhar, j. seetharaman, d. wang, k. cunningham, l. -c. ma, y. fang, r. xiao, m. c. baran, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2nxp.pdb. transcription 17-nov-06 2nxp Ca Se
  Title: structure of ntd2 domain of the human taf5 subunit of tfiid
  Author: s. bhattacharya, s. takada, r. h. jacobson
  Keywords: tfiid subunit, taf5
  
• 2nyd.pdb. unknown function 20-nov-06 2nyd Zn
  Title: crystal structure of staphylococcus aureus hypothetical protein sa1388
  Author: k. s. singh, x. zhang, h. zhang
  Keywords: selenomethionine sad
  
• 2nyt.pdb. hydrolase 21-nov-06 2nyt
  Title: the apobec2 crystal structure and functional implications for aid
  Author: c. prochnow, r. bransteitter, m. g. klein, m. f. goodman, x. s. chen
  Keywords: zinc-ion binding
  
• 2nz0.pdb. membrane protein 22-nov-06 2nz0 Zn Ca
  Title: crystal structure of potassium channel kv4.3 in complex with its regulatory subunit kchip1 (casp target)
  Author: h. wang, y. yan, y. shen, l. chen, k. wang
  Keywords: kchip1
  
• 2o1i.pdb. deoxyribonucleic acid 28-nov-06 2o1i Rh
  Title: rh(bpy)2chrysi complexed to mismatched dna
  Author: v. c. pierre, j. t. kaiser, j. k. barton
  Keywords: metallointercalator, dna recognition
  
• 2o39.pdb. viral protein/immune system 01-dec-06 2o39 Ca
  Title: human adenovirus type 11 knob in complex with domains scr1 and scr2 of cd46 (membrane cofactor protein, mcp)
  Author: d. b. persson, d. m. reiter, n. arnberg, t. stehle
  Keywords: mcp, cd46, adenovirus, fiber knob, ad11, virus receptor complex, scr, short consensus repeat, ccp, complement control protein
  
• 2o5h.pdb. structural genomics, unknown function 06-dec-06 2o5h Se
  Title: uncharacterized protein conserved in bacteria, cog3792 from neisseria meningitidis
  Author: y. kim, h. li, m. gu, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
  
• 2o8h.pdb. hydrolase 12-dec-06 2o8h Mg Zn
  Title: crystal structure of the catalytic domain of rat phosphodiesterase 10a
  Author: j. pandit, e. s. marr
  
  
• 2o8i.pdb. structural genomics, unknown function 12-dec-06 2o8i Se
  Title: crystal structure of protein atu2327 from agrobacterium tumefaciens str. c58
  Author: c. chang, x. xu, j. gu, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: agrobacterium tumefaciens str. c58, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
  
• 2o8p.pdb. signaling protein 12-dec-06 2o8p Se
  Title: crystal structure of a putative 14-3-3 protein from cryptosporidium parvum, cgd7_2470
  Author: a. dong, j. lew, g. wasney, l. lin, a. hassanali, y. zhao, m. vedadi, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, j. r. walker, a. bochkarev, r. hui, s. j. brokx, structural genomics consortium (sgc)
  Keywords: 14-3-3, cell regulator protein, cryptosporidium parvum, structural genomics, structural genomics consortium, sgc
  
• 2oar.pdb. membrane protein 17-dec-06 2oar Au
  Title: mechanosensitive channel of large conductance (mscl)
  Author: d. c. rees, g. chang, r. h. spencer, a. t. lee, s. steinbacher, p. strop
  
  
• 2oau.pdb. membrane protein 17-dec-06 2oau
  Title: mechanosensitive channel of small conductance (mscs)
  Author: d. c. rees, r. b. bass, s. steinbacher, p. strop, m. t. barclay
  Keywords: mechanosensitive ion channel, membrane protein
  
• 2odx.pdb. oxidoreductase 27-dec-06 2odx Zn (NMR, 21 structures)
  Title: solution structure of zn(ii)cox4
  Author: j. h. coyne iii, s. ciofi-baffoni
  Keywords: metallo-protein