Recent PDB releases or updates: week of 29 December 2006
- 1gl5.pdb.
transferase 28-aug-01 1gl5
(NMR, 20 structures)
Title: nmr structure of the sh3 domain from the tec protein tyrosine kinase
Author: t. d. mulhern, s. e. pursglove, g. w. booker
Keywords: tyrosine-protein kinase, atp-binding, sh3 domain, phosphorylation
- 1gl6.pdb.
coupling protein 28-aug-01 1gl6
Cl
Title: plasmid coupling protein trwb in complex with the non-hydrolysable gtp analogue gdpnp
Author: f. x. gomis-ruth, g. moncalian, f. de la cruz, m. coll
Keywords: type iv secretion system, bacterial conjugat protein, ring helicase
- 1gmm.pdb.
xylanase 19-sep-01 1gmm
Na Ca
Title: carbohydrate binding module cbm6 from xylanase u clostridium thermocellum
Author: m. czjzek, a. mosbah, d. bolam, j. allouch, v. zamboni, b. henrissat, h. j. gilbert
Keywords: cbm family 6, xylan binding
- 1gmu.pdb.
metallochaperone 24-sep-01 1gmu
Title: structure of uree
Author: h. k. song, s. b. mulrooney, r. huber, r. hausinger
- 1gmv.pdb.
metallochaperone 24-sep-01 1gmv
Title: structure of uree
Author: h. k. song, s. b. mulrooney, r. huber, r. hausinger
- 1gns.pdb.
hydrolase 06-oct-01 1gns
Title: subtilisin bpn'
Author: o. almog, d. t. gallagher, j. e. ladner, s. strausberg, p. alexander p. bryan, g. l. gilliland
Keywords: serine proteinase
- 1gnv.pdb.
hydrolase 10-oct-01 1gnv
Title: calcium independent subtilisin bpn' mutant
Author: o. almog, g. l. gilliland
Keywords: serine proteinase
- 1gnz.pdb.
lectin 11-oct-01 1gnz
Title: lectin i-b4 from griffonia simplicifolia (gs i-b4)metal free form
Author: j. lescar, r. loris, e. mitchell, c. gautier, a. imberty
Keywords: glycoprotein
- 1gvl.pdb.
hydrolase 14-feb-02 1gvl
Title: human prokallikrein 6 (hk6)/ prozyme/ proprotease m/ proneurosin
Author: f. x. gomis-ruth, a. bayes, g. sotiropoulou, g. pampalakis, t. tsetsenis, v. villegas, f. x. aviles, m. coll
Keywords: zymogen, human kallikrein
- 1gwj.pdb.
oxidoreductase 18-mar-02 1gwj
Title: morphinone reductase
Author: t. m. barna, p. c. e. moody
Keywords: flavoenzyme, opiate metabolism, beta/alpha barrel
- 1gy2.pdb.
electron transport 16-apr-02 1gy2
Cu
Title: crystal structure of met148leu rusticyanin
Author: m. a. hough, l. d. kanbi, s. antonyuk, f. dodd, s. hasnain
Keywords: m148l, rusticyanin, mutant, metal-binding, electron transport, periplasmic, signal
- 1gy9.pdb.
oxidoreductase 22-apr-02 1gy9
Fe
Title: taurine/alpha-ketoglutarate dioxygenase from escherichia coli
Author: j. m. elkins, n. i. burzlaff, m. j. ryle, j. s. lloyd, i. j. clifton, j. e. baldwin, r. p. hausinger, p. l. roach
Keywords: sulphur metabolism, oxygenase, alpha-ketoglutarate, taud, tfda
- 1gyc.pdb.
oxidoreductase 23-apr-02 1gyc
Cu
Title: crystal structure determination at room temperature of a laccase from trametes versicolor in its oxidised form containing a full complement of copper ions
Author: t. choinowski, m. antorini, k. piontek
Keywords: oxidoreductase, diphenol oxidase, lignin degradation
- 1h1l.pdb.
oxidoreductase 18-jul-02 1h1l
Cl Mg Mo Fe
Title: nitrogenase mo-fe protein from klebsiella pneumoniae, nifv mutant
Author: s. m. mayer, c. a. gormal, b. e. smith, d. m. lawson
Keywords: nitrogen metabolism, molybdoenzymes, electron transfer, oxidoreductase
- 1h1x.pdb.
oxygen transport 25-jul-02 1h1x
Fe
Title: sperm whale myoglobin mutant t67r s92d
Author: s. zuccotti, m. bolognesi
Keywords: peroxidase, oxygen storage, heme, muscle
- 1h2b.pdb.
oxidoreductase 02-aug-02 1h2b
Zn
Title: crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon aeropyrum pernix at 1.65a resolution
Author: j. e. guy, m. n. isupov, j. a. littlechild
Keywords: hyperthermophile, alcohol dehydrogenase oxidoreductase, zinc
- 1il3.pdb.
hydrolase 07-may-01 1il3
Title: structure of ricin a chain bound with inhibitor 7- deazaguanine
Author: d. j. miller, k. ravikumar, h. shen, j. -k. suh, s. m. kerwin, j. d. robertus
Keywords: toxin-inhibitor complex, glycosidase, hydrolase, ribosome-inhibiting protein
- 1il4.pdb.
hydrolase 07-may-01 1il4
Title: structure of ricin a chain bound with inhibitor 9- deazaguanine
Author: d. j. miller, k. ravikumar, h. shen, j. -k. suh, s. m. kerwin, j. d. robertus
Keywords: toxin-inhibitor complex, glycosidase, hydrolase, ribosome-inhibiting protein
- 1il5.pdb.
hydrolase 07-may-01 1il5
Title: structure of ricin a chain bound with inhibitor 2,5-diamino- 4,6-dihydroxypyrimidine (ddp)
Author: d. j. miller, k. ravikumar, h. shen, j. -k. suh, s. m. kerwin, j. d. robertus
Keywords: toxin-inhibitor complex, glycosidase, hydrolase, ribosome-inhibiting protein
- 1il9.pdb.
hydrolase 07-may-01 1il9
Title: structure of ricin a chain bound with inhibitor 8-methyl-9- oxoguanine
Author: d. j. miller, k. ravikumar, h. shen, j. -k. suh, s. m. kerwin, j. d. robertus
Keywords: toxin-inhibitor complex, glycosidase, hydrolase, ribosome-inhibiting protein
- 1ojl.pdb.
response regulator 10-jul-03 1ojl
Title: crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding
Author: l. sallai, p. a. tucker
Keywords: two component system, aaa domain, ntrc family, dna-binding, transcription regulation
- 1txj.pdb.
structural genomics, unknown function 05-jul-04 1txj
Title: crystal structure of translationally controlled tumour- associated protein (tctp) from plasmodium knowlesi
Author: j. r. walker, m. vedadi, s. sharma, s. houston, j. lew, m. amani, g. wasney, t. skarina, j. bray, m. sundstrom, c. arrowsmith, a. edwards, r. hui, structural genomics consortium (sgc)
Keywords: sgc, guanine nucleotide- free chaperones, guanine nucleotide exchange factor, beta- sandwich, helix-turn-helix
- 1uuv.pdb.
oxidoreductase 11-jan-04 1uuv
Fe
Title: naphthalene 1,2-dioxygenase with nitric oxide and indole bound in the active site.
Author: a. karlsson, j. v. parales, r. e. parales, d. t. gibson, h. eklund, s. ramaswamy
Keywords: non-heme iron dioxygenase, enzyme-substrate complex, aromatic hydrocarbons catabolism,
- 1uuw.pdb.
oxidoreductase 11-jan-04 1uuw
Fe
Title: naphthalene 1,2-dioxygenase with nitric oxide bound in the active site.
Author: a. karlsson, j. v. parales, r. e. parales, d. t. gibson, h. eklund, s. ramaswamy
Keywords: non-heme iron dioxygenase, enzyme-substrate complex, aromatic hydrocarbons catabolism, metal-binding, iron-sulfur, iron, 2fe-2s, dioxygenase, nad, plasmid
- 1uzc.pdb.
nuclear protein 09-mar-04 1uzc
(NMR, 23 structures)
Title: the structure of an ff domain from human hypa/fbp11
Author: m. d. allen, p. jemth, a. friedler, o. schon, m. bycroft
Keywords: nmr structure, transcription, phosphopeptide recognition, rna polymerase ii carboxyl-terminal domain
- 1uzl.pdb.
oxidoreductase 14-mar-04 1uzl
Cs
Title: maba from mycobacterium tuberculosis
Author: m. cohen-gonsaud, s. ducasse, a. quemard, g. labesse
Keywords: fatty acid biosynthesis, oxidoreductase, nadp,
- 1uzm.pdb.
oxidoreductase 14-mar-04 1uzm
Cs
Title: maba from mycobacterium tuberculosis
Author: m. cohen-gonsaud, s. ducasse, a. quemard, g. labesse
Keywords: oxidoreductase
- 1uzn.pdb.
oxidoreductase 14-mar-04 1uzn
Cs
Title: maba from mycobacterium tuberculosis
Author: m. cohen-gonsaud, s. ducasse, a. quemard, g. labesse
Keywords: oxidoreductase
- 1vyk.pdb.
photosystem ii 30-apr-04 1vyk
Zn
Title: crystal structure of psbq protein of photosystem ii from higher plants
Author: j. a. hermoso, m. balsera, j. de las rivas, j. b. arellano
Keywords: oxygen-enhancer evolving complex, water oxidizing complex, psbq, oee3, photosynthesis, chloroplast, transit peptide, thylakoid, membrane
- 1vz6.pdb.
transferase 14-may-04 1vz6
Title: ornithine acetyltransferase (orf6 gene product - clavulanic acid biosynthesis) from streptomyces clavuligerus
Author: j. m. elkins, n. j. kershaw, c. j. schofield
Keywords: clavulanic acid, n-acetyl-ornithine, n-acetyl-glutamate, antibiotic, transferase
- 1vz7.pdb.
transferase 14-may-04 1vz7
Title: ornithine acetyltransferase (orf6 gene product - clavulanic acid biosynthesis) from streptomyces clavuligerus
Author: j. m. elkins, n. j. kershaw, c. j. schofield
Keywords: clavulanic acid, n-acetyl-ornithine, n-acetyl-glutamate, antibiotic
- 1vz8.pdb.
transferase 14-may-04 1vz8
Se
Title: ornithine acetyltransferase (orf6 gene product - clavulanic acid biosynthesis) from streptomyces clavuligerus (semet structure)
Author: j. m. elkins, n. j. kershaw, c. j. schofield
Keywords: clavulanic acid, n-acetyl-ornithine, n-acetyl-glutamate, antibiotic
- 1vzz.pdb.
isomerase 30-may-04 1vzz
Title: crystal structure of mutant enzyme y32f/d103l of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. s. jang, h. j. cha, k. y. choi
Keywords: coneshell, closed barrel, curved b-sheet
- 1w01.pdb.
isomerase 30-may-04 1w01
Title: crystal structure of mutant enzyme y57f/d103l of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. s. jang, h. j. cha, k. y. choi
Keywords: coneshell, closed barrel, curved b-sheet
- 1w02.pdb.
isomerase 30-may-04 1w02
Title: crystal structure of mutant enzyme y16f/d103l of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. s. jang, h. j. cha, k. y. choi
Keywords: coneshell, closed barrel, curved b-sheet
- 1w08.pdb.
hydrolase 02-jun-04 1w08
Cl
Title: structure of t70n human lysozyme
Author: r. johnson, j. christodoulou, b. luisi, m. dumoulin, g. caddy, m. alcocer, g. murtagh, d. archer, c. dobson
Keywords: o-glycosyl, human lysozyme, enzyme, amyloid
- 1w18.pdb.
transferase 16-jun-04 1w18
Title: crystal structure of levansucrase from gluconacetobacter diazotrophicus
Author: c. martinez-fleites, m. ortiz-lombardia, t. pons, n. tarbouriech, e. j. taylor, l. hernandez, g. j. davies
Keywords: glycosyltransferase
- 1w4e.pdb.
transferase 23-jul-04 1w4e
(NMR, 20 structures)
Title: peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions
Author: n. ferguson, t. d. sharpe, p. j. schartau, m. d. allen, c. m. johnson, s. sato, a. r. fersht
Keywords: ultrafast folding, homologues, transferase
- 1w4h.pdb.
transferase 23-jul-04 1w4h
(NMR, 20 structures)
Title: peripheral-subunit from mesophilic, thermophilic and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions
Author: n. ferguson, t. d. sharpe, p. j. schartau, m. d. allen, c. m. johnson, a. r. fersht
Keywords: homologues, peripheral-subunit binding domains, transferase
- 1w58.pdb.
cell division 06-aug-04 1w58
Mg
Title: ftsz gmpcpp soak i213 (m. jannaschii)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell division protein, cell- division protein, complete proteome, ftsz, gtp-binding, multigene family, septation, tubulin
- 1w59.pdb.
cell division 06-aug-04 1w59
Title: ftsz dimer, empty (m. jannaschii)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell division protein, cell- division protein, complete proteome, ftsz, gtp-binding, multigene family, septation, tubulin, ftsz, filament, z-ring, gtpase
- 1w5a.pdb.
cell division 06-aug-04 1w5a
Mg
Title: ftsz dimer, mggtp soak (m. jannaschii)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell division protein, cell- division protein, complete proteome, ftsz, gtp-binding, multigene family, septation, tubulin, ftsz, filament, z-ring, gtpase
- 1w5b.pdb.
cell division 06-aug-04 1w5b
Title: ftsz dimer, gtp soak (m. jannaschii)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell division protein, cell- division protein, complete proteome, ftsz, gtp-binding, multigene family, septation, tubulin, ftsz, filament, z-ring, gtpase
- 1w5e.pdb.
cell division 06-aug-04 1w5e
Title: ftsz w319y mutant, p1 (m. jannaschii)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell-division protein, complete proteome, gtp-binding, multigene family, septation, tubulin, ftsz, filament, z-ring, gtpase
- 1w5f.pdb.
cell division 06-aug-04 1w5f
Mg
Title: ftsz, t7 mutated, domain swapped (t. maritima)
Author: m. a. oliva, s. c. cordell, j. lowe
Keywords: cell-division protein, complete proteome, gtp-binding, multigene family, septation, tubulin, ftsz, filament, z-ring, gtpase, domain swapped
- 1w5r.pdb.
transferase 04-aug-04 1w5r
Title: x-ray crystallographic strcuture of a c70q mycobacterium smegmatis n-arylamine acetyltransferase
Author: s. j. holton, j. sandy, f. rodrigues-lima, j. -m. dupret s. bhakta, m. e. m. noble, e. sim
Keywords: acyltransferase
- 1w8a.pdb.
signaling protein 17-sep-04 1w8a
Title: third lrr domain of drosophila slit
Author: j. a. howitt, n. j. clout, e. hohenester
Keywords: axon guidance, leucine-rich repeat glycoprotein, egf-like domain, signal protein
- 1w94.pdb.
archaeal imp4-brix domain 05-oct-04 1w94
Se
Title: crystal structure of mil (mth680), an archaeal imp4-like protein
Author: c. l. ng, a. a. antson, m. ortiz-lombardia
Keywords: brix domain, rna-binding protein
- 1wb1.pdb.
protein synthesis 29-oct-04 1wb1
Hg Mg
Title: crystal structure of translation elongation factor selb from methanococcus maripaludis in complex with gdp
Author: m. leibundgut, c. frick, m. thanbichler, a. boeck, n. ban
Keywords: protein synthesis,selenium,ribosome
- 1wb2.pdb.
protein synthesis 29-oct-04 1wb2
Hg
Title: crystal structure of translation elongation factor selb from methanococcus maripaludis, apo form
Author: m. leibundgut, c. frick, m. thanbichler, a. boeck, n. ban
Keywords: protein synthesis,selenium,ribosome
- 1wb3.pdb.
protein synthesis 29-oct-04 1wb3
Hg Mg
Title: crystal structure of translation elongation factor selb from methanococcus maripaludis in complex with the gtp analogue gppnhp
Author: m. leibundgut, c. frick, m. thanbichler, a. boeck, n. ban
Keywords: protein synthesis,selenium,ribosome
- 1wcq.pdb.
hydrolase 19-nov-04 1wcq
Na
Title: mutagenesis of the nucleophilic tyrosine in a bacterial sialidase to phenylalanine.
Author: s. newstead, j. n. watson, a. j. bennet, g. taylor
Keywords: micromonospora viridifaciens, hydrolase neuraminidase, glycosidase
- 1xcc.pdb.
structural genomics, unknown function 01-sep-04 1xcc
Title: 1-cys peroxidoxin from plasmodium yoelli
Author: m. vedadi, s. sharma, s. houston, j. lew, g. wasney, m. amani, x. xu, j. bray, m. sundstrom, c. arrowsmith, a. edwards, r. hui, a. bochkarev, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 1y6z.pdb.
structural genomics, unknown function 07-dec-04 1y6z
Title: c-terminal domain of plasmodium falciparum putative heat shock protein pf14_0417
Author: v. v. lunin, e. botchkareva, p. loppnau, m. amani, j. bray, m. vedadi, a. edwards, c. arrowsmith, m. sundstrom, a. bochkarev, r. hui, o. plotnikova, structural genomics consortium (sgc)
Keywords: chaperone, structural genomics, structural genomics consortium, sgc
- 1yo3.pdb.
transport protein 26-jan-05 1yo3
Title: 1.65 angstrom structure of the dynein light chain 1 from plasmodium falciparum
Author: j. r. walker, j. lew, m. amani, z. alam, g. wasney, k. boulanger, m. sundstrom, c. arrowsmith, a. edwards, r. hui, a. bochkarev, m. vedadi, structural genomics consortium (sgc)
Keywords: dynein light chain, microtubule, malaria, sgc
- 1z6g.pdb.
transferase 22-mar-05 1z6g
Title: crystal structure of guanylate kinase from plasmodium falciparum
Author: a. m. mulichak, j. lew, j. artz, j. choe, j. r. walker, y. zhao, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. gao, structural genomics consortium (sgc)
Keywords: structural genomics, sgc , structural genomics consortium
- 1z7d.pdb.
transferase 24-mar-05 1z7d
Title: ornithine aminotransferase py00104 from plasmodium yoelii
Author: j. r. walker, z. alam, m. amani, j. lew, g. wasney, k. boulanger, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. vedadi, structural genomics consortium (sgc)
Keywords: sgc, malaria, plasmodium yoelii, ornithine aminotransferase
- 1z81.pdb.
isomerase 29-mar-05 1z81
Title: crystal structure of cyclophilin from plasmodium yoelii.
Author: a. mulichak, z. alam, m. amani, j. lew, g. wasney, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. vedadi, structural genomics consortium (sgc)
Keywords: structural genomics consortium, sgc
- 1ziv.pdb.
hydrolase 27-apr-05 1ziv
Ca
Title: catalytic domain of human calpain-9
Author: j. r. walker, t. davis, e. m. newman, f. mackenzie, a. dong, j. choe, c. arrowsmith, m. sundstrom, a. edwards, a. bochkarev, s. dhe- paganon, structural genomics consortium (sgc)
Keywords: papain, calcium-dependent, thiol protease, structural genomics consortium, sgc
- 1zo2.pdb.
transport protein 12-may-05 1zo2
Title: structure of nuclear transport factor 2 (ntf2) from cryptosporidium parvum
Author: j. choe, j. d. artz, m. gao, j. lew, y. zhao, c. arrowsmith, a. edwards, m. sundstrom, a. bochkarev, r. hui, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2a22.pdb.
protein transport 21-jun-05 2a22
Title: structure of vacuolar protein sorting 29 from cryptosporidium parvum
Author: s. brokx, y. zhao, z. alam, j. lew, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, j. r. walker, structural genomics consortium (sgc)
Keywords: alpha-beta-beta-alpha sandwich , structural genomics, structural genomics consortium, sgc
- 2a4a.pdb.
lyase 28-jun-05 2a4a
Title: deoxyribose-phosphate aldolase from p. yoelii
Author: j. r. walker, m. amani, j. lew, j. wiegelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. vedadi, structural genomics consortium (sgc)
Keywords: aldolase, tim beta/alpha barrel, deoc, dera, structural genomics, structural genomics consortium, sgc
- 2ac1.pdb.
hydrolase 18-jul-05 2ac1
Title: crystal structure of a cell-wall invertase from arabidopsis thaliana
Author: m. verhaest, k. le roy, c. de ranter, a. van laere, w. van den ende, a. rabijns
- 2aif.pdb.
dna binding protein, cytokine 29-jul-05 2aif
Title: crystal structure of high mobility like protein, nhp2, putative from cryptosporidium parvum
Author: a. dong, y. zhao, j. lew, z. alam, m. melone, c. h. arrowsmith, a. m. edwards, j. weigelt, m. sundstrom, r. hui, a. bochkarev, j. artz, structural genomics consortium (sgc)
Keywords: high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, sgc
- 2amx.pdb.
hydrolase 10-aug-05 2amx
Co U
Title: crystal structure of plasmodium yoelii adenosine deaminase (py02076)
Author: a. dong, m. vedadi, g. wasney, y. zhao, j. lew, z. alam, m. melone, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2aqw.pdb.
structural genomics, unknown function 18-aug-05 2aqw
I Se
Title: structure of putative orotidine-monophosphate-decarboxylase from plasmodium yoelii (py01515)
Author: a. dong, m. vedadi, g. wasney, y. zhao, j. lew, z. alam, m. melone, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium
- 2ary.pdb.
hydrolase 22-aug-05 2ary
Ca
Title: catalytic domain of human calpain-1
Author: j. r. walker, t. davis, v. lunin, e. m. newman, f. mackenzie, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, s. dhe- paganon, structural genomics consortium (sgc)
Keywords: papain, calcium-dependent, thiol protease, hydrolase,structural genomics consortium, sgc
- 2av4.pdb.
structural genomics, unknown function 29-aug-05 2av4
Cl
Title: crystal structure of plasmodium yoelii thioredoxin-like protein 4a (dim1)
Author: a. dong, y. zhao, j. lew, z. alam, m. melone, g. wasney, m. vedadi, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, j. artz, structural genomics consortium (sgc)
Keywords: dim1, u5 snrnp-specific 15kd protein, structural genomics, structural genomics consortium, sgc
- 2awp.pdb.
oxidoreductase 01-sep-05 2awp
Cl U
Title: crystal structure of plasmodium knowlesi structure of iron super-oxide dismutase
Author: a. dong, y. zhao, j. lew, z. alam, m. melone, g. wasney, m. vedadi, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2ayv.pdb.
ligase 08-sep-05 2ayv
U
Title: crystal structure of a putative ubiquitin-conjugating enzyme e2 from toxoplasma gondii
Author: w. tempel, a. dong, y. zhao, j. lew, z. alam, m. melone, g. wasney, i. kozieradzki, m. vedadi, c. arrowsmith, m. sundstrom, j. weigelt, a. edwards, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics consortium, ubiquitin, ubiquitin-conjugating enzyme, sgc
- 2b0r.pdb.
unknown function 14-sep-05 2b0r
U
Title: crystal structure of cyclase-associated protein from cryptosporidium parvum
Author: w. tempel, a. dong, y. zhao, j. lew, i. kozieradzki, z. alam, m. melone, g. wasney, m. vedadi, c. arrowsmith, a. edwards, j. weigelt, m. sundstrom, r. hui, a. bochkarev, j. artz, structural genomics consortium (sgc)
Keywords: cryptosporidium parvum, cyclase-associated protein, sgc
- 2b71.pdb.
isomerase 03-oct-05 2b71
Cl
Title: plasmodium yoelii cyclophilin-like protein
Author: a. dong, p. finerty, g. wasney, m. vedadi, j. lew, y. zhao, i. kozieradzki, m. melone, z. alam, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2b9u.pdb.
isomerase 13-oct-05 2b9u
Title: crystal structure of dtdp-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
Author: v. rajakannan, k. kondo, t. mizushima, a. suzuki, t. yamane
Keywords: jelly roll-like topology, flattened barrel
- 2bag.pdb.
hydrolase 14-oct-05 2bag
Title: 3d structure of torpedo californica acetylcholinesterase complexed with ganstigmine
Author: d. lamba, c. bartolucci, m. siotto, m. racchi, g. villetti, m. delcanale
Keywords: cholinesterase, neurotransmitter cleavage, anti-alzheimer drug
- 2bc6.pdb.
cell adhesion 18-oct-05 2bc6
Title: crystal structure of bacterial adhesin fada l14a mutant
Author: s. nithianantham, m. xu, n. wu, m. shoham, y. w. han
Keywords: fada l14a mutant
- 2bdd.pdb.
transferase 20-oct-05 2bdd
Title: crystal structure of holo-acp-synthase from plasmodium yoelii
Author: a. dong, m. melone, y. zhao, j. lew, i. koeieradzki, z. alam, g. wasney, m. vedadi, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2bfq.pdb.
macro_h2a domain/hydrolase 10-dec-04 2bfq
Title: macro domains are adp-ribose binding molecules
Author: g. i. karras, h. r. buhecha, m. d. allen, c. pugieux, f. sait, m. bycroft, a. g. ladurner
Keywords: crystal structure p-loop, nucleotide, hydrolase, macro_h2a domain/hydrolase
- 2bfr.pdb.
macro_h2a domain/hydrolase 09-dec-04 2bfr
Mg
Title: the macro domain is an adp-ribose binding module
Author: g. i. karras, h. r. buhecha, m. d. allen, c. pugieux, f. sait, m. bycroft, a. g. ladurner
Keywords: crystal structure p-loop, nucleotide, hydrolase, macro_h2a domain/hydrolase
- 2bgg.pdb.
protein/rna complex 22-dec-04 2bgg
Mn
Title: the structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt sirna duplex.
Author: j. s. parker, s. m. roe, d. barford
Keywords: piwi domain, rnai, risc, protein/rna complex
- 2bjd.pdb.
hydrolase 02-feb-05 2bjd
Cl Cd
Title: sulfolobus solfataricus acylphosphatase. triclinic space group
Author: c. rosano, s. zuccotti, m. bolognesi
Keywords: hyperthermophile, hydrolase
- 2bje.pdb.
hydrolase 02-feb-05 2bje
Cl
Title: acylphosphatase from sulfolobus solfataricus. monclinic p21 space group
Author: c. rosano, s. zuccotti
- 2bkg.pdb.
designed protein 16-feb-05 2bkg
Title: crystal structure of e3_19 an designed ankyrin repeat protein
Author: h. k. binz, a. kohl, a. pluckthun, m. g. grutter
Keywords: ankyrin repeat, consensus design, protein stability
- 2bn5.pdb.
nuclear protein/complex 21-mar-05 2bn5
(NMR, 28 structures)
Title: p-element somatic inhibitor protein complex with u1-70k proline-rich peptide
Author: t. ignjatovic, j. -c. yang, p. j. g. butler, d. neuhaus, k. nagai
Keywords: protein-protein interaction, nmr structure, proline-rich peptide, inhibitor, complex, nuclear protein/complex
- 2bn6.pdb.
nuclear protein 21-mar-05 2bn6
(NMR, 29 structures)
Title: p-element somatic inhibitor protein
Author: t. ignjatovic, j. c. yang, p. j. g. butler, d. neuhaus, k. nagai
Keywords: protein-protein interaction, nmr structure, proline-rich peptide, nuclear protein
- 2bn8.pdb.
cell cycle protein 22-mar-05 2bn8
(NMR, 1 structure)
Title: solution structure and interactions of the e.coli cell division activator protein ceda
Author: h. a. chen, p. simpson, t. huyton, d. roper, s. matthews
Keywords: cell division activator protein, cell cycle protein
- 2bng.pdb.
hydrolase 24-mar-05 2bng
Ca Se
Title: structure of an m.tuberculosis leh-like epoxide hydrolase
Author: p. johansson, m. arand, t. unge, t. bergfors, t. a. jones, s. l. mowbray
Keywords: epoxide hydrolase, limonene, hydrolase
- 2bnj.pdb.
hydrolase 27-jan-05 2bnj
Title: the xylanase ta from thermoascus aurantiacus utilizes arabinose decorations of xylan as significant substrate specificity determinants.
Author: m. vardakou, j. w. murray, j. flint, p. christakopoulos, r. j. lewis, h. j. gilbert
Keywords: glycosidase, hydrolase, pyrrolidone carboxylic acid, xylan degradation
- 2bnp.pdb.
reaction centre 31-mar-05 2bnp
Cl Mg Fe
Title: lipidic cubic phase grown reaction centre from rhodobacter sphaeroides, ground state
Author: g. katona, a. snijder, p. gourdon, u. andreasson, o. hansson, l. e. andreasson, r. neutze
Keywords: transport
- 2bns.pdb.
reaction centre 31-mar-05 2bns
Cl Mg Fe
Title: lipidic cubic phase grown reaction centre from rhodobacter sphaeroides, excited state
Author: g. katona, a. snijder, p. gourdon, u. andreasson, o. hansson, l. e. andreasson, r. neutze
Keywords: transmembrane, transport
- 2bo4.pdb.
transferase 07-apr-05 2bo4
Title: dissection of mannosylglycerate synthase: an archetypal mannosyltransferase
Author: j. flint, e. taylor, m. yang, d. n. bolam, l. e. tailford, c. martinez-fleites, e. j. dodson, b. g. davis, h. j. gilbert, g. j. davies
Keywords: glycosyltransferase, mannose, transferase, stereoselectivity
- 2bo6.pdb.
transferase 08-apr-05 2bo6
Mn
Title: dissection of mannosylglycerate synthase: an archetypal mannosyltransferase
Author: j. flint, e. taylor, m. yang, d. n. bolam, l. e. tailford, c. martinez-fleites, e. j. dodson, b. g. davis, h. j. gilbert, g. j. davies
Keywords: glycosyltransferase,mannose,transferase, stereoselectivity
- 2bo7.pdb.
transferase 08-apr-05 2bo7
Co
Title: dissection of mannosylglycerate synthase: an archetypal mannosyltransferase
Author: j. flint, e. taylor, m. yang, d. n. bolam, l. e. tailford, c. martinez-fleites, e. j. dodson, b. g. davis, h. j. gilbert, g. j. davies
Keywords: glycosyltransferase, mannose, structure, stereoselectivity
- 2bo8.pdb.
transferase 08-apr-05 2bo8
Cl Mn
Title: dissection of mannosylglycerate synthase: an archetypal mannosyltransferase
Author: j. flint, e. taylor, m. yang, d. n. bolam, l. e. tailford, c. martinez-fleites, e. j. dodson, b. g. davis, h. j. gilbert, g. j. davies
Keywords: glycosyltransferase, mannose, transferase, stereoselectivity
- 2bqq.pdb.
transferase 27-apr-05 2bqq
Title: x-ray strucure of the n-terminal domain of human doublecortin
Author: m. h kim, d. r. cooper, u. derewenda, z. s. derewenda
Keywords: ubiquitin-like fold, microtubule associated, signaling protein, transferase
- 2br2.pdb.
hydrolase 29-apr-05 2br2
Cl
Title: rnase ph core of the archaeal exosome
Author: e. lorentzen, s. fribourg, e. conti
Keywords: rnase ph, phosphorolytic, exoribonuclease, rna degradation, archaeal, hydrolase
- 2br5.pdb.
porin 01-may-05 2br5
Title: cmci-n160 sah
Author: l. m. oster, d. r. lester, a. terwisscha van scheltinga, m. svenda, c. genereux, i. andersson
Keywords: porin
- 2br7.pdb.
receptor protein 18-apr-05 2br7
Title: crystal structure of acetylcholine-binding protein (achbp) from aplysia californica in complex with hepes
Author: p. h. n. celie, i. e. kasheverov, d. y. mordvintsev, r. c. hogg, p. van nierop, r. van elk, s. e. van rossum-fikkert, m. n. zhmak, d. bertrand, v. tsetlin, t. k. sixma, a. b. smit
Keywords: glycoprotein, igg-fold, immunoglobulin domain, pentamer, signal, nicotinic receptor, receptor protein
- 2br8.pdb.
receptor/inhibitor complex 19-apr-05 2br8
Title: crystal structure of acetylcholine-binding protein (achbp) from aplysia californica in complex with an alpha- conotoxin pnia variant
Author: p. h. n. celie, i. e. kasheverov, d. y. mordvintsev, r. c. hogg, p. van nierop, r. van elk, s. e. van rossum-fikkert, m. n. zhmak, d. bertrand, v. tsetlin, t. k. sixma, a. b. smit
Keywords: receptor/inhibitor complex
- 2brj.pdb.
isomerase 06-may-05 2brj
Se
Title: x-ray structure of the allene oxide cyclase from arabidopsis thaliana
Author: e. hofmann, p. zerbe, f. schaller
Keywords: jasmonate synthesis, allene oxide cyclase, beta barrel, isomerase, transit peptide
- 2brr.pdb.
antibody/antigen complex 10-may-05 2brr
Title: complex of the neisserial pora p1.4 epitope peptide and two fab-fragments (antibody mn20b9.34)
Author: c. j. oomen, p. hoogerhout, b. kuipers, g. vidarsson, l. van alphen, p. gros
Keywords: anti-pora antibody, p1.4 antibody, antigen, porin, transmembrane, antibody/antigen complex
- 2bte.pdb.
synthetase 28-may-05 2bte
Hg Zn
Title: thermus thermophilus leucyl-trna synthetase complexed with with a trnaleu transcript in the post-editing conformation and a post-transfer editing substrate analogue
Author: s. cusack, m. tukalo, a. yaremchuk, r. fukunaga, s. yokoyama
Keywords: class i aminoacyl-trna synthetase, editing, synthetase
- 2btt.pdb.
contractile protein 19-may-05 2btt
(NMR, 20 structures)
Title: nmr structure of myo3-sh3 domain from myosin-type i from s. cerevisiae
Author: v. musi, b. birdsall, a. pastore
Keywords: myosin-type i, muscle protein, contractile protein, actin-binding, atp-binding, motor protein, myosin, nucleotide-binding, phosphorylation
- 2bun.pdb.
appa 15-jun-05 2bun
(NMR, 20 structures)
Title: solution structure of the bluf domain of appa 5-125
Author: j. s. grinstead, s. -t. hsu, w. laan, a. m. j. j. bonvin, k. hellingwerf, r. boelens, r. kaptein
Keywords: fad, alpha-beta sandwich, bluf domain
- 2bv3.pdb.
elongation factor 21-jun-05 2bv3
Mg
Title: crystal structure of a mutant elongation factor g trapped with a gtp analogue
Author: s. hansson, r. singh, a. t. gudkov, a. liljas, d. t. logan
Keywords: elongation factor, gtp-binding, translation mutation thr84ala, protein biosynthesis
- 2bv6.pdb.
transcriptional regulator 22-jun-05 2bv6
Se
Title: crystal structure of mgra, a global regulator and major virulence determinant in staphylococcus aureus
Author: p. r. chen, t. bae, w. a. williams, e. m. duguid, p. a. rice, o. schneewind, c. he
Keywords: virulence determinant, transcriptional factors
- 2bvf.pdb.
oxidase 26-apr-05 2bvf
Title: crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 3 (p1)
Author: j. w. a. koetter, g. e. schulz
Keywords: enantiomeric substrates, flavoenzymes, nicotine degradation, oxidase
- 2bvg.pdb.
oxidase 26-apr-05 2bvg
Title: crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 1 (p21)
Author: j. w. a. koetter, g. e. schulz
Keywords: enantiomeric substrates, flavoenzymes, nicotine degradation, oxidase
- 2bvh.pdb.
oxidase 25-apr-05 2bvh
Title: crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 2 (p21)
Author: j. w. a. koetter, g. e. schulz
Keywords: enantiomeric substrates, flavoenzymes, nicotine degradation, oxidase
- 2bvl.pdb.
toxin 30-jun-05 2bvl
Mn Ta Br
Title: crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion
Author: d. j. reinert, t. jank, k. aktories, g. e. schulz
Keywords: glycosyltransferase
- 2bvm.pdb.
toxin 30-jun-05 2bvm
Mn
Title: crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion
Author: d. j. reinert, t. jank, k. aktories, g. e. schulz
Keywords: glycosyltransferase
- 2bx8.pdb.
transport protein 25-jul-05 2bx8
Title: human serum albumin complexed with azapropazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: carrier protein,lipid-binding,fatty acid, metal-binding,drug-binding,azapropazone,transport
- 2bxa.pdb.
transport protein 25-jul-05 2bxa
Title: human serum albumin complexed with 3-carboxy-4-methyl-5- propyl-2-furanpropanoic acid (cmpf)
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, m. otagiri, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,3-carboxy-4-methyl-5-propyl- 2-furanpropanoic acid (cmpf)
- 2bxb.pdb.
transport protein 26-jul-05 2bxb
Title: human serum albumin complexed with oxyphenbutazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,oxyphenbutazone
- 2bxc.pdb.
transport protein 26-jul-05 2bxc
Title: human serum albumin complexed with phenylbutazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,phenylbutazone
- 2bxd.pdb.
transport protein 26-jul-05 2bxd
Title: human serum albumin complexed with warfarin
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,warfarin
- 2bxe.pdb.
transport protein 26-jul-05 2bxe
F
Title: human serum albumin complexed with diflunisal
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,diflunisal
- 2bxf.pdb.
transport protein 26-jul-05 2bxf
Cl
Title: human serum albumin complexed with diazepam
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin, carrier protein, lipid-binding, metal-binding, drug-binding, diazepam
- 2bxg.pdb.
transport protein 26-jul-05 2bxg
Title: human serum albumin complexed with ibuprofen
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,ibuprofen
- 2bxh.pdb.
transport protein 26-jul-05 2bxh
Title: human serum albumin complexed with indoxyl sulfate
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin, carrier protein, lipid-binding, metal-binding, drug-binding, indoxyl sulfate
- 2bxi.pdb.
transport protein 26-jul-05 2bxi
Title: human serum albumin complexed with myristate and azapropazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,azapropazone,myristate
- 2bxk.pdb.
transport protein 26-jul-05 2bxk
Cl
Title: human serum albumin complexed with myristate, azapropazone and indomethacin
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,azapropazone,myristate, indomethacin
- 2bxl.pdb.
transport protein 26-jul-05 2bxl
I
Title: human serum albumin complexed with myristate and 3,5- diiodosalicylic acid
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,3,5-diiodosalicylic acid, myristate
- 2bxm.pdb.
transport protein 26-jul-05 2bxm
Cl
Title: human serum albumin complexed with myristate and indomethacin
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,myristate,indomethacin
- 2bxn.pdb.
transport protein 26-jul-05 2bxn
I
Title: human serum albumin complexed with myristate and iodipamide
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,iodipamide,myristate
- 2bxo.pdb.
transport protein 26-jul-05 2bxo
Title: human serum albumin complexed with myristate and oxyphenbutazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: albumin,carrier protein,lipid-binding, metal-binding,drug-binding,myristate,oxyphenbutazone
- 2bxp.pdb.
transport protein 26-jul-05 2bxp
Title: human serum albumin complexed with myristate and phenylbutazone
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: carrier protein,lipid-binding,phenylbutazone, metal-binding,drug-binding,myristate,transport protein
- 2bxq.pdb.
transport protein 26-jul-05 2bxq
Cl
Title: human serum albumin complexed with myristate, phenylbutazone and indomethacin
Author: j. ghuman, p. a. zunszain, i. petitpas, a. a. bhattacharya, s. curry
Keywords: carrier protein,lipid-binding,metal-binding, drug-binding,myristate,phenylbutazone,indomethacin, transport protein
- 2byn.pdb.
receptor 03-aug-05 2byn
Title: crystal structure of apo achbp from aplysia californica
Author: s. b. hansen, g. sulzenbacher, t. huxford, p. marchot, p. taylor, y. bourne
Keywords: nicotinic acetylcholine receptor, soluble acetylcholine receptor, conformational flexibility
- 2byo.pdb.
lipoprotein 03-aug-05 2byo
Zn
Title: crystal structure of mycobacterium tuberculosis lipoprotein lppx (rv2945c)
Author: g. sulzenbacher, s. canaan, v. roig-zamboni, d. maurin, b. gicquel, y. bourne
Keywords: lipid transport, mycobacterium tuberculosis, membrane, palmitate
- 2byp.pdb.
receptor complex 03-aug-05 2byp
Title: crystal structure of aplysia californica achbp in complex with alpha-conotoxin imi
Author: s. b. hansen, g. sulzenbacher, t. huxford, p. marchot, p. taylor, y. bourne
Keywords: nicotinic acetylcholine receptor complex, conformational flexibility, conotoxin
- 2byr.pdb.
receptor 03-aug-05 2byr
Title: crystal structure of achbp from aplysia californica in complex with methyllycaconitine
Author: s. b. hansen, g. sulzenbacher, t. huxford, p. marchot, p. taylor, author, y. bourne
Keywords: nicotinic acetylcholine receptor, conformational flexibility methyllycaconitine, receptor
- 2bys.pdb.
receptor 04-aug-05 2bys
Title: crystal structure of achbp from aplysia californica in complex with lobeline
Author: s. b. hansen, g. sulzenbacher, t. huxford, p. marchot, p. taylor, y. bourne
Keywords: nicotinic acetylcholine, conformational flexibility, lobeline, receptor
- 2byt.pdb.
synthetase 04-aug-05 2byt
Hg Zn
Title: thermus thermophilus leucyl-trna synthetase complexed with a trnaleu transcript in the post-editing conformation
Author: s. cusack, m. tukalo, a. yaremchuk, r. fukunaga, s. yokoyama
Keywords: atp + l-leucine + trna (leu) gives amp + ppi l-leucyl-trna(leu), class i aminoacyl- trna synthetase, editing
- 2bz2.pdb.
transcription regulation 08-aug-05 2bz2
(NMR, 20 structures)
Title: solution structure of nelf e rrm
Author: k. schweimer, j. n. rao, l. neumann, p. rosch, b. m. wohrl
Keywords: rna recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor, rna- binding, transcription, transcription regulation
- 2bz8.pdb.
sh3 domain 16-mar-05 2bz8
Na
Title: n-terminal sh3 domain of cin85 bound to cbl-b peptide
Author: n. cardenes, g. moncalian, j. bravo
Keywords: cin85 adaptor protein, cbl ubiquitin ligase, endocytosis
- 2c07.pdb.
oxidoreductase 15-jul-05 2c07
Title: oxoacyl-acp reductase of plasmodium falciparum
Author: j. e. urch, s. r. wickramasinghe, k. a. inglis, s. muller, a. h. fairlamb, d. m. f. van aalten
Keywords: short-chain alcohol reductase, fatty acid biosynthesis, apicoplast, ketoacyl-acp reductase, oxidoreductase
- 2c08.pdb.
transferase 25-aug-05 2c08
Se
Title: rat endophilin a1 bar domain
Author: j. l. gallop, h. m. kent, h. t. mcmahon, p. r. evans
Keywords: bar domain, membrane curvature, sh3 domain, acyltransferase, coiled coil, lipid-binding, multigene family, phosphorylation, transferase
- 2c0r.pdb.
transferase 07-sep-05 2c0r
Title: crystal structure of phosphoserine aminotransferase from bacillus circulans var. alkalophilus at ph 8.5
Author: e. g. kapetaniou, a. c. papageorgiou
Keywords: pyridoxal-5'-phosphate, transferase, pyridine serine biosynthesis, amino-acid biosynthesis, aminotransferase, pyridoxal phosphate, pyridoxine biosynthesis, serine biosynthesis
- 2c1x.pdb.
transferase 22-sep-05 2c1x
Title: structure and activity of a flavonoid 3-o glucosyltransferase reveals the basis for plant natural product modification
Author: w. offen, c. martinez-fleites, e. kiat-lim, m. yang, b. g. davis, c. a. tarling, c. m. ford, d. j. bowles, g. j. davies
Keywords: flavonoid, wine, catalysis, glycosylation, transferase
- 2c1z.pdb.
transferase 22-sep-05 2c1z
F
Title: structure and activity of a flavonoid 3-o glucosyltransferase reveals the basis for plant natural product modification
Author: w. offen, c. martinez-fleites, e. kiat-lim, m. yang, b. g. davis, c. a. tarling, c. m. ford, d. j. bowles, g. j. davies
Keywords: flavonoid, wine, catalysis, glycosylation, transferase
- 2c2f.pdb.
dna-binding protein 28-sep-05 2c2f
Zn Fe
Title: dps from deinococcus radiodurans
Author: c. v. romao, e. mitchell, s. mcsweeney
Keywords: iron, deinococcus radiodurans, dna-binding protein
- 2c2u.pdb.
dna-binding protein 30-sep-05 2c2u
Zn Fe
Title: dps from deinococcus radiodurans
Author: c. v. romao, e. mitchell, s. mcsweeney
Keywords: iron, deinococcus radiodurans, dna-binding
- 2c2w.pdb.
transferase 30-sep-05 2c2w
Cl
Title: the fluorinase from streptomyces cattleya is also a chlorinase. structure of 5'-chloro-5'-deoxyadenosine crystallised in the fluorinase.
Author: a. r. mcewan, j. h. naismith, d. o'hagan
Keywords: 5'-chloro-5'-deoxyadenosine, fla, bacterial fluorinating enzyme, bacterial chlorinating enzyme, streptomyces cattleya, transferase, chlorinase
- 2c31.pdb.
lyase 03-oct-05 2c31
Mg
Title: crystal structure of oxalyl-coa decarboxylase in complex with the cofactor derivative thiamin-2-thiazolone diphosphate and adenosine diphosphate
Author: c. l. berthold, p. moussatche, n. g. j. richards, y. lindqvist
Keywords: oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate
- 2c36.pdb.
viral protein 03-oct-05 2c36
Cl Zn
Title: structure of unliganded hsv gd reveals a mechanism for receptor-mediated activation of virus entry
Author: c. krummenacher, v. m. supekar, j. c. whitbeck, e. lazear, s. a. connolly, r. j. eisenberg, g. h. cohen, d. c. wiley, a. carfi
Keywords: viral protein, herpes, immunoglobulin-like, glycoprotein, transmembrane
- 2c42.pdb.
oxidoreductase 14-oct-05 2c42
Mg Fe Ca
Title: crystal structure of pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus
Author: c. cavazza, c. contreras-martel, l. pieulle, e. chabriere, e. c. hatchikian, j. c. fontecilla-camps
Keywords: iron, iron-sulfur, iron-sulfur cluster, oxidoreductase, pyruvate catabolism, tpp-dependent enzyme, metal-binding, electron transport
- 2c4f.pdb.
hydrolase 18-oct-05 2c4f
F Ca
Title: crystal structure of factor vii.stf complexed with pd0297121
Author: j. t. kohrt, e. zhang
Keywords: serine protease, egf, egf-like domain, gla, receptor enzyme, glycoprotein, hydrolase, protease, hydroxylation, lipoprotein, palmitate, transmembrane
- 2c4h.pdb.
hydrolase 19-oct-05 2c4h
Cl
Title: torpedo californica acetylcholinesterase in complex with 500mm acetylthiocholine
Author: j. p. colletier, d. fournier, h. m. greenblatt, j. l. sussman, g. zaccai, i. silman, m. weik
Keywords: serine esterase, synapse, membrane, neurotransmitter cleavage, alpha/beta hydrolase, substrate-inhibition, alternative splicing, glycoprotein, gpi-anchor, lipoprotein, neurotransmitter degradation
- 2c58.pdb.
hydrolase 26-oct-05 2c58
Cl
Title: torpedo californica acetylcholinesterase in complex with 20mm acetylthiocholine
Author: j. p. colletier, d. fournier, h. m. greenblatt, j. l. sussman, g. zaccai, i. silman, m. weik
Keywords: serine esterase, synapse, membrane, neurotransmitter cleavage, alpha/beta hydrolase, substrate inhibition, alternative splicing, glycoprotein, gpi-anchor, lipoprotein, neurotransmitter degradation
- 2c5d.pdb.
growth regulation/complex 26-oct-05 2c5d
Ni Ca
Title: structure of a minimal gas6-axl complex
Author: t. sasaki, p. g. knyazev, n. j. clout, y. cheburkin, w. goehring, a. ullrich, r. timpl, e. hohenester
Keywords: laminin g-like domain, receptor tyrosine kinase, immunoglobulin-like domain, growth regulation, egf-like domain, receptor
- 2c5f.pdb.
hydrolase 27-oct-05 2c5f
Title: torpedo californica acetylcholinesterase in complex with a non hydrolysable substrate analogue, 4-oxo-n,n,n- trimethylpentanaminium
Author: j. p. colletier, d. fournier, h. m. greenblatt, j. l. sussman, g. zaccai, i. silman, m. weik
Keywords: gpi-anchor, serine esterase, lipoprotein
- 2c5g.pdb.
hydrolase 27-oct-05 2c5g
Cl
Title: torpedo californica acetylcholinesterase in complex with 20mm thiocholine
Author: j. p. colletier, d. fournier, h. m. greenblatt, j. l. sussman, g. zaccai, i. silman, m. weik
Keywords: serine esterase, lipoprotein
- 2c62.pdb.
transcription 07-nov-05 2c62
Title: crystal structure of the human transcription cofactor pc4 in complex with single-stranded dna
Author: s. werten, d. moras
Keywords: single-stranded dna, protein-dna complex, dna unwinding, activator, dna-binding, nuclear protein, phosphorylation, transcription, transcription regulation
- 2c7c.pdb.
chaperonin 22-nov-05 2c7c
(cryo-electron microscopy)
Title: fitted coordinates for groel-atp7-groes cryo-em complex (emd-1180)
Author: n. a. ranson, d. k. clare, g. w. farr, d. houldershaw, a. l. horwich, h. r. saibil
Keywords: chaperone, atomic structure fitting, cell cycle, cell division, chaperonin, nucleotide-binding, phosphorylation
- 2c7d.pdb.
chaperonin 22-nov-05 2c7d
(cryo-electron microscopy)
Title: fitted coordinates for groel-adp7-groes cryo-em complex (emd-1181)
Author: n. a. ranson, d. k. clare, g. w. farr, d. houldershaw, a. l. horwich, h. r. saibil
Keywords: chaperone, atomic structure fitting, cell cycle, cell division, chaperonin, nucleotide-binding, phosphorylation
- 2c7f.pdb.
hydrolase 21-nov-05 2c7f
Title: the structure of a family 51 arabinofuranosidase, araf51, from clostridium thermocellum in complex with 1,5-alpha-l- arabinotriose.
Author: e. j. taylor, n. l. smith, j. p. turkenburg, s. d'souza, h. j. gilbert, g. j. davies
Keywords: glycosidase, xylan, arabinan, hydrolase
- 2c7i.pdb.
ligase 24-nov-05 2c7i
Title: structure of protein ta0514, putative lipoate protein ligase from t. acidophilum.
Author: e. mcmanus, r. perham, b. luisi
Keywords: ligase
- 2c8n.pdb.
hydrolase 06-dec-05 2c8n
Title: the structure of a family 51 arabinofuranosidase, araf51, from clostridium thermocellum in complex with 1,3-linked arabinoside of xylobiose.
Author: e. j. taylor, n. l. smith, j. p. turkenburg, s. d'souza, h. j. gilbert, g. j. davies
Keywords: glycosidase, mechanism, xylan, arabinan, hydrolase
- 2c9a.pdb.
hydrolase 09-dec-05 2c9a
Na Se
Title: crystal structure of the mam-ig module of receptor protein tyrosine phosphatase mu
Author: a. r. aricescu, w. c. hon, c. siebold, w. lu, p. a. van der merwe, e. y. jones
Keywords: hydrolase, immunoglobulin domain, receptor
- 2c9m.pdb.
hydrolase 13-dec-05 2c9m
Cl K Ca
Title: structure of (sr) calcium-atpase in the ca2e1 state solved in a p1 crystal form.
Author: a. -m. lund jensen, t. l. -m. sorensen, c. olesen, j. v. moller, p. nissen
Keywords: p-type atpase, cation pump, membrane protein, modulatory atp, hydrolase, atp-binding, calcium transport, ion transport, metal-binding, nucleotide-binding, phosphorylation
- 2c9o.pdb.
hydrolase 14-dec-05 2c9o
Title: 3d structure of the human ruvb-like helicase ruvbl1
Author: p. m. matias, s. gorynia, p. donner, m. a. carrondo
Keywords: aaa+-atpase, atp-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, dna recombination, transcription, transcription regulation, activator, helicase, nucleotide-binding
- 2c9z.pdb.
transferase 15-dec-05 2c9z
Title: structure and activity of a flavonoid 3-0 glucosyltransferase reveals the basis for plant natural product modification
Author: w. offen, c. martinez-fleites, e. kiat-lim, m. yang, b. g. davis, c. a. tarling, c. m. ford, d. j. bowles, g. j. davies
Keywords: flavonoid, wine, catalysis, glycosylation, transferase
- 2cb8.pdb.
transport 03-jan-06 2cb8
Zn
Title: high resolution crystal structure of liganded human l-acbp
Author: j. p. taskinen, d. m. van aalten, j. knudsen, r. k. wierenga
Keywords: fatty acid, acetylation, alternative splicing, lipid-binding, transport
- 2cbu.pdb.
hydrolase 09-jan-06 2cbu
Ca
Title: beta-glucosidase from thermotoga maritima in complex with castanospermine
Author: t. m. gloster, g. j. davies, r. madsen
Keywords: inhibitor, transition state mimic, family 1, carbohydrate metabolism, cellulose degradation, glycosidase, hydrolase, polysaccharide degradation
- 2cbv.pdb.
hydrolase 09-jan-06 2cbv
Title: beta-glucosidase from thermotoga maritima in complex with calystegine b2
Author: t. m. gloster, r. madsen, g. j. davies
Keywords: inhibitor, transition state mimic, family 1, carbohydrate metabolism, cellulose degradation, glycosidase, hydrolase, polysaccharide degradation
- 2ch0.pdb.
nuclear protein 10-mar-06 2ch0
(NMR, 20 structures)
Title: solution structure of the human man1 c-terminal domain (residues 655-775)
Author: s. caputo, j. couprie, i. duband-goulet, f. lin, s. braud, m. gondry, h. j. worman, b. gilquin, s. zinn-justin
Keywords: winged helix motif, dna, nuclear protein
- 2ch4.pdb.
transferase/chemotaxis 10-mar-06 2ch4
Title: complex between bacterial chemotaxis histidine kinase chea domains p4 and p5 and receptor-adaptor protein chew
Author: s. y. park, a. m. bilwes, b. r. crane
Keywords: protein-protein complex, signal transduction, histidine kinase, sensory transduction, phosphorylation, transferase
- 2ch7.pdb.
chemotaxis 13-mar-06 2ch7
Pb
Title: crystal structure of the cytoplasmic domain of a bacterial chemoreceptor from thermotoga maritima
Author: s. y. park, a. m. bilwes, b. r. crane
Keywords: receptor, four-helix bundle, signal transduction, methyl-accepting receptor
- 2chh.pdb.
lectin 15-mar-06 2chh
U Ca
Title: ralstonia solanacearum high-affinity mannose-binding lectin
Author: e. p. mitchell, m. wimmerova, a. imberty
Keywords: sugar-binding protein, d-mannose, plant pathogen, hypothetical protein
- 2chn.pdb.
hydrolase 15-mar-06 2chn
Ca Se
Title: bacteroides thetaiotaomicron hexosaminidase with o- glcnacase activity - nag-thiazoline complex
Author: r. j. dennis, e. j. taylor, m. s. macauley, k. a. stubbs, j. p. turkenburg, s. j. hart, g. n. black, d. j. vocadlo, g. j. davies
Keywords: hydrolase, n-acetylglucosamibe
- 2cho.pdb.
hydrolase 15-mar-06 2cho
Ca
Title: bacteroides thetaiotaomicron hexosaminidase with o- glcnacase activity
Author: r. j. dennis, e. j. taylor, m. s. macauley, k. a. stubbs, j. p. turkenburg, s. j. hart, g. n. black, d. j. vocadlo, g. j. davies
Keywords: hydrolase, n-acetylglucosamine
- 2cik.pdb.
antigen/peptide complex 22-mar-06 2cik
Title: insights into crossreactivity in human allorecognition: the structure of hla-b35011 presenting an epitope derived from cytochrome p450.
Author: c. s. hourigan, m. harkiolaki, n. a. peterson, j. i. bell, e. y. jones, c. a. o'callaghan
Keywords: pyrrolidone carboxylic acid
- 2cip.pdb.
hydrolase 24-mar-06 2cip
Title: structure of the michaelis complex of a family 26 lichenase
Author: v. a. money, n. l. smith, a. scaffidi, r. v. stick, h. j. gilbert, g. j. davies
Keywords: 4 beta-1,3 glucanase, lichenase, hydrolase, glycosidase, polysaccharide degradation, cellulose degradation, carbohydrate metabolism, michaelis complex, glycoside hydrolase
- 2cit.pdb.
hydrolase 24-mar-06 2cit
F
Title: structure of the covalent intermediate of a family 26 lichenase
Author: v. a. money, n. l. smith, a. scaffidi, r. v. stick, h. j. gilbert, g. j. davies
Keywords: 4 beta-1,3 glucanase, lichenase, hydrolase, glycosidase, polysaccharide degradation, cellulose degradation, carbohydrate metabolism, michaelis complex, glycoside hydrolase
- 2ciu.pdb.
protein transport 24-mar-06 2ciu
Title: structure of the ims domain of the mitochondrial import protein tim21 from s. cerevisiae
Author: r. albrecht, k. zeth, p. rehling, n. pfanner
Keywords: inner membrane, membrane, mitochondrion, protein transport, transit peptide, translocation, transmembrane, transport
- 2cjj.pdb.
dna-binding protein 04-apr-06 2cjj
Title: crystal structure of the myb domain of the rad transcription factor from antirrhinum majus
Author: c. e. m. stevenson, n. burton, m. m. costa, u. nath, r. a. dixon, e. s. coen, d. m. lawson
Keywords: dna-binding protein, myb transcription factor, dna-binding, nuclear protein, floral asymmetry
- 2cjk.pdb.
rna-binding protein 04-apr-06 2cjk
(NMR, 25 structures)
Title: structure of the rna binding domain of hrp1 in complex with rna
Author: j. m. perez-canadillas
Keywords: rna-binding, rna processing, mrna processing, nonsense-mediated mrna decay, cleavage, polyadenylation, nuclear protein, rna-binding protein
- 2cjs.pdb.
exocytosis 06-apr-06 2cjs
Zn
Title: structural basis for a munc13-1 homodimer - munc13-1 - rim heterodimer switch: c2-domains as versatile protein- protein interaction modules
Author: j. lu, m. machius, i. dulubova, h. dai, t. c. sudhof, d. r. tomchick, j. rizo
Keywords: transport, c2 domains
- 2cjt.pdb.
exocytosis 06-apr-06 2cjt
Title: structural basis for a munc13-1 homodimer - munc13-1 - rim heterodimer switch: c2-domains as versatile protein- protein interaction modules
Author: j. lu, m. machius, i. dulubova, h. dai, t. c. sudhof, d. r. tomchick, j. rizo
Keywords: neurotransmitter release, rim, zinc, munc13, c2 domains, exocytosis, metal-binding, alternative splicing, protein-protein interactions, zinc finger, coiled coil, synaptosome
- 2ckg.pdb.
hydrolase 18-apr-06 2ckg
Title: the structure of senp1 sumo-2 co-complex suggests a structural basis for discrimination between sumo paralogues during processing
Author: c. dong, j. h. naismith
Keywords: hydrolase, thiol protease, nuclear protein, ubl conjugation pathway
- 2ckh.pdb.
hydrolase 18-apr-06 2ckh
Title: senp1-sumo2 complex
Author: l. n. shen, c. dong, h. liu, r. t. hay, j. h. naismith
Keywords: nuclear protein, protease co- complex, sumo, protease, hydrolase, thiol protease
- 2ckl.pdb.
transcription regulation complex 20-apr-06 2ckl
I Zn
Title: ring1b-bmi1 e3 catalytic domain structure
Author: g. buchwald, p. van der stoop, o. weichenrieder, a. perrakis, m. van lohuizen, t. k. sixma
Keywords: repressor, zinc- finger, ring domain, transcription, transcription regulation complex
- 2clv.pdb.
immune system 02-may-05 2clv
Title: mhc class i natural mutant h-2kbm8 heavy chain complexed with beta-2 microglobulin and pbm8 peptide
Author: c. mazza, n. auphan-anezin, a. guimezanes, g. a. barrett-wilt, f. montero-julian, a. roussel, d. f. hunt, a. m. schmitt-verhulst, b. malissen
Keywords: immune system, immunoglobulin domain, glycoprotein, transmembrane, alloreactivity, mhc i, h-2kbm8, membrane, class i mhc, polymorphism
- 2clz.pdb.
immune system 03-may-05 2clz
Title: mhc class i natural mutant h-2kbm8 heavy chain complexed with beta-2 microglobulin and pbm1 peptide
Author: c. mazza, n. auphan-anezin, a. guimezanes, g. a. barrett-wilt, f. montero-julian, a. roussel, d. f. hunt, a. m. schmitt-verhulst, b. malissen
Keywords: immune system, immunoglobulin domain, glycoprotein, transmembrane, alloreactivity, mhc i, h-2kbm8, membrane, class i mhc, polymorphism
- 2cnx.pdb.
transcription 25-may-06 2cnx
Title: wdr5 and histone h3 lysine 4 dimethyl complex at 2.1 angstrom
Author: a. j. ruthenburg, w. wang, d. m. graybosch, h. li, c. d. allis, d. j. patel, g. l. verdine
Keywords: lysine methylation, mll1, leukemia, hox gene activation, transcription activation, transcription
- 2co0.pdb.
transcription 25-may-06 2co0
Title: wdr5 and unmodified histone h3 complex at 2.25 angstrom
Author: a. j. ruthenburg, w. wang, d. m. graybosch, h. li, c. d. allis, d. j. patel, g. l. verdine
Keywords: lysine methylation, mll1, leukemia, hox gene activation, transcription activation
- 2cw6.pdb.
lyase 17-jun-05 2cw6
Mg
Title: crystal structure of human hmg-coa lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria
Author: z. fu, j. a. runquist, j. f. hunt, h. m. miziorko, j. -j. p. kim
Keywords: ketogenic enzyme
- 2d9j.pdb.
signaling protein 09-dec-05 2d9j
(NMR, 20 structures)
Title: solution structure of the rgs domain of regulator of g- protein signaling 7
Author: h. p. zhang, t. nagasima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: regulator of g-protein signalling 7, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2da6.pdb.
dna binding protein 13-dec-05 2da6
(NMR, 20 structures)
Title: solution structure of the homeobox domain of hepatocyte nuclear factor 1-beta (hnf-1beta)
Author: s. ohnishi, t. kigawa, m. sato, s. koshiba, m. inoue, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2da7.pdb.
dna binding protein 13-dec-05 2da7
(NMR, 20 structures)
Title: solution structure of the homeobox domain of zinc finger homeobox protein 1b (smad interacting protein 1)
Author: s. ohnishi, t. kigawa, m. sato, s. koshiba, m. inoue, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2dc1.pdb.
oxidoreductase 19-dec-05 2dc1
Title: crystal structure of l-aspartate dehydrogenase from hyperthermophilic archaeon archaeoglobus fulgidus
Author: k. yoneda, h. sakuraba, h. tsuge, t. ohshima
Keywords: nad
- 2de0.pdb.
transferase 07-feb-06 2de0
Title: crystal structure of human alpha 1,6-fucosyltransferase, fut8
Author: n. taniguchi, h. ihara, a. nakagawa
Keywords: fucosyltransferase, glycosyltransferase, n-glycan, core fucose, sh3 domain
- 2dio.pdb.
isomerase 30-mar-06 2dio
Se
Title: crystal structure of the allene oxide cyclase 2 with bound inhibitor vernolic acid
Author: e. hofmann, f. schaller, p. zerbe
Keywords: inhibitor complex
- 2dpy.pdb.
hydrolase 18-may-06 2dpy
Title: crystal structure of the flagellar type iii atpase flii
Author: k. imada, k. namba, t. minamino
Keywords: alpha-beta structure
- 2dre.pdb.
plant protein 08-jun-06 2dre
Mg
Title: crystal structure of water-soluble chlorophyll protein from lepidium virginicum at 2.00 angstrom resolution
Author: d. horigome, h. satoh, n. itoh, k. mitsunaga, i. oonishi, a. nakagawa, a. uchida
Keywords: tetramer, plant, lepidium virginicum, chlorophyll, water-soluble chlorophyll protein, singlet oxygen, photooxidation, chlorophyll carrier, kunitz (sti) inhibitors
- 2ds4.pdb.
protein binding 21-jun-06 2ds4
(NMR, 20 structures)
Title: solution structure of the filamin domain from human tripartite motif protein 45
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dt6.pdb.
rna binding protein 11-jul-06 2dt6
(NMR, 20 structures)
Title: solution structure of the first surp domain of human splicing factor sf3a120
Author: k. kuwasako, f. he, m. inoue, a. tanaka, s. sugano, p. guentert, y. muto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structure genomics, sf3a120, surp domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dt7.pdb.
rna binding protein 11-jul-06 2dt7
(NMR, 20 structures)
Title: solution structure of the second surp domain of human splicing factor sf3a120 in complex with a fragment of human splicing factor sf3a60
Author: f. he, k. kuwasako, m. inoue, p. guntert, y. muto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structure genomics, sf3a120, sf3a60, surp domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dxs.pdb.
transferase/transferase inhibitor 30-aug-06 2dxs
Title: crystal structure of hcv ns5b rna polymerase complexed with a tetracyclic inhibitor
Author: t. adachi, j. tsuruha, s. doi, k. murase, k. ikegashira, s. watanabe, k. uehara, t. orita, a. nomura, m. kamada
Keywords: ns5b, rna polymerase
- 2dym.pdb.
protein turnover/protein turnover 15-sep-06 2dym
Title: the crystal structure of saccharomyces cerevisiae atg5- atg16(1-46) complex
Author: m. matsushita, n. n. suzuki, f. inagaki
Keywords: herix-bundle
- 2dyo.pdb.
protein turnover/protein turnover 15-sep-06 2dyo
Title: the crystal structure of saccharomyces cerevisiae atg5- atg16(1-57) complex
Author: m. matsushita, n. n. suzuki, f. inagaki
Keywords: herix-bundle
- 2e45.pdb.
protein binding 04-dec-06 2e45
(NMR, 25 structures)
Title: solution structure of fe65 ww domain
Author: t. kouno, m. mizuguchi, y. nozawa, t. sugaya, k. kawano, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2f00.pdb.
ligase 10-nov-05 2f00
Mg Se
Title: escherichia coli murc
Author: t. deva, e. n. baker, c. j. squire, c. a. smith
Keywords: atpase, bacterial cell wall
- 2f4z.pdb.
structural genomics, unknown function 24-nov-05 2f4z
U
Title: toxoplasma gondii ubiquitin conjugating enzyme tgtwinscan_2721- e2 domain
Author: a. dong, j. lew, y. zhao, m. melone, z. alam, i. kozieradski, g. wasney, m. vedadi, m. sundstrom, j. weigelt, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2f6i.pdb.
hydrolase 29-nov-05 2f6i
Title: crystal structure of the clpp protease catalytic domain from plasmodium falciparum
Author: a. mulichak, p. loppnau, j. bray, m. amani, m. vedadi, g. wasney, p. finerty, m. sundstrom, j. weigelt, a. edwards, c. arrowsmith, r. hui, o. plotnikova, structural genomics consortium (sgc)
Keywords: structural genomics , structural genomics consortium, sgc
- 2fbn.pdb.
structural genomics, unknown function 09-dec-05 2fbn
Title: plasmodium falciparum putative fk506-binding protein pfl2275c, c-terminal tpr-containing domain
Author: a. dong, j. lew, i. koeieradzki, e. sundararajan, m. melone, g. wasney, y. zhao, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: pfl2275c, tpr-containing domain, structural genomics, structural genomics consortium, sgc
- 2fds.pdb.
structural genomics, unknown function 14-dec-05 2fds
I
Title: crystal structure of plasmodium berghei orotidine 5'- monophosphate decarboxylase (ortholog of plasmodium falciparum pf10_0225)
Author: w. qiu, a. dong, g. wasney, m. vedadi, j. lew, i. kozieradski, z. alam, m. melone, j. weigelt, m. sundstrom, a. edwards, c. arrowsmith, r. hui, m. gao, a. bochkarev, j. d. artz, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2feb.pdb.
hydrolase 15-dec-05 2feb
(NMR, 20 structures)
Title: nmr solution structure, dynamics and binding properties of the kringle iv type 8 module of apolipoprotein(a)
Author: s. chitayat, v. kanelis, m. l. koschinsky, s. p. smith
Keywords: disulphide bonded protein
- 2ffc.pdb.
lyase 19-dec-05 2ffc
Title: crystal structure of plasmodium vivax orotidine- monophosphate-decarboxyl ump bound
Author: a. dong, g. wasney, m. vedadi, j. lew, i. koeieradzki, y. zhao, a. m. edwards, m. melone, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: pv-pf10_0225, sgc, structural genomics, structural genomics consortium, structural genomics consortium
- 2fga.pdb.
transferase 21-dec-05 2fga
Title: crystal structure of chk1 with a urea inhibitor
Author: c. park
- 2fho.pdb.
rna binding protein 26-dec-05 2fho
(NMR, 20 structures)
Title: nmr solution structure of the human spliceosomal protein complex p14-sf3b155
Author: k. kuwasako, n. dohmae, m. inoue, m. shirouzu, p. guntert, b. seraphin, y. muto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2fht.pdb.
chemokine 27-dec-05 2fht
Title: crystal structure of viral macrophage inflammatory protein- ii
Author: y. li, d. liu, r. cao, s. kumar, c. z. dong, s. r. wilson, y. g. gao, z. huang
Keywords: herpesvirus, anti-hiv
- 2fj2.pdb.
chemokine 30-dec-05 2fj2
Title: crystal structure of viral macrophage inflammatory protein- ii
Author: y. li, d. liu, r. cao, s. kumar, c. z. dong, s. r. wilson, y. g. gao, z. huang
Keywords: herpesvirus, anti-hiv
- 2fk9.pdb.
transferase 04-jan-06 2fk9
Title: human protein kinase c, eta
Author: j. r. walker, d. r. littler, p. j. finerty jr. , f. mackenzie, e. m. newman, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: kinase, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase, structural genomics, structural genomics consortium, sgc
- 2fo3.pdb.
structural genomics, unknown function 12-jan-06 2fo3
Title: plasmodium vivax ubiquitin conjugating enzyme e2
Author: a. dong, y. zhao, j. lew, i. kozieradski, z. alam, m. melone, g. wasney, m. vedadi, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, r. hui, a. bochkarev, w. qiu, structural genomics consortium (sgc)
Keywords: ubc, structural genomics, structural genomics consortium
- 2fq6.pdb.
lyase 17-jan-06 2fq6
F
Title: cystathionine beta-lyase (cbl) from escherichia coli in complex with n-hydrazinocarbonylmethyl-2-trifluoromethyl- benzamide
Author: m. s. junop
Keywords: plp cofactor covalently bound to p3f inhibitor
- 2fu0.pdb.
structural genomics, unknown function 25-jan-06 2fu0
Title: plasmodium falciparum cyclophilin pfe0505w putative cyclosporin-binding domain
Author: a. dong, j. lew, e. sundararajan, y. zhao, g. wasney, m. vedadi, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: pfe0505w, cyclosporin-binding domain, structural genomics, structural genomics consortium, sgc
- 2fwk.pdb.
dna binding protein 02-feb-06 2fwk
Title: crystal structure of cryptosporidium parvum u6 snrna- associated sm-like protein lsm5
Author: a. dong, m. gao, y. zhao, j. lew, g. a. wasney, i. kozieradzki, m. vedadi, a. edwards, c. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, j. artz, structural genomics consortium (sgc)
Keywords: lsm5, structural genomics, structural genomics consortium, sgc
- 2fxy.pdb.
hydrolase 07-feb-06 2fxy
(NMR, 15 structures)
Title: solution structure of 55-72 segment of staphylococcal nuclease
Author: m. wang, l. shan, j. f. wang
Keywords: solution structure
- 2fxz.pdb.
hydrolase 07-feb-06 2fxz
(NMR, 15 structures)
Title: solution structure of 97-109 segment of staphylococcal nuclease
Author: m. wang, l. shan, j. f. wang
Keywords: solution structure
- 2fyv.pdb.
hydrolase 08-feb-06 2fyv
Zn
Title: golgi alpha-mannosidase ii complex with an amino-salacinol carboxylate analog
Author: d. a kuntz, t. hamlet, d. r. rose
- 2fyy.pdb.
immune system 08-feb-06 2fyy
Title: the role of t cell receptor alpha genes in directing human mhc restriction
Author: j. j. miles, n. a. borg
Keywords: hla-b*3501, ig domain
- 2fz3.pdb.
immune system 09-feb-06 2fz3
Title: the role of t cell receptor alpha genes in directing human mhc restriction
Author: j. j. miles, n. a. borg
Keywords: hla-b*3508, ig domain
- 2fzh.pdb.
oxidoreductase 09-feb-06 2fzh
Title: new insights into dihydrofolate reductase interactions: analysis of pneumocystis carinii and mouse dhfr complexes with nadph and two highly potent trimethoprim derivatives
Author: v. cody, j. pace, k. chisum, a. rosowsky
Keywords: trimethoprim derivatives, ring stacking interactions
- 2fzi.pdb.
oxidoreductase 09-feb-06 2fzi
Title: new insights into dhfr interactions: analysis of pneumocystis carinii and mouse dhfr complexes with nadph and two highly potent trimethoprim derivatives
Author: v. cody, j. pace, k. chisum, a. rosowsky
Keywords: trimethoprim derivatives, ring stacking interactions
- 2fzj.pdb.
oxidoreductase 09-feb-06 2fzj
Title: new insights into dhfr interactions: analysis of pneumocystis carinii and mouse dhfr complexes with nadph and two highly potent trimethoprim derivatives
Author: v. cody, j. pace, k. chisum, a. rosowsky
Keywords: trimethoprim derivatives, ring stacking interactions
- 2fzn.pdb.
oxidoreductase 09-feb-06 2fzn
Title: structure of the e. coli puta proline dehydrogenase domain reduced by dithionite and complexed with proline
Author: j. j. tanner
Keywords: proline dehydrogenase, puta, flavoenzyme, proline catabolism, dithionite-reduced
- 2g18.pdb.
oxidoreductase 13-feb-06 2g18
Ca
Title: crystal structure of nostoc sp. 7120 phycocyanobilin:ferredoxin oxidoreductase (pcya) apoprotein
Author: s. -l. tu, j. c. lagarias, a. j. fisher
- 2g1e.pdb.
transferase 14-feb-06 2g1e
(NMR, 20 structures)
Title: solution structure of ta0895
Author: i. y. yeo, e. hong, j. jung, w. lee, a. yee, c. h. arrowsmith
Keywords: molybdopterin
- 2g3t.pdb.
transferase 21-feb-06 2g3t
Title: crsytal structure of human spermidine/spermine n1- acetyltransferase (hssat)
Author: y. zhu, n. yang, d. c. wang
- 2g7f.pdb.
hydrolase 28-feb-06 2g7f
Cl Mg
Title: the 1.95 a crystal structure of vibrio cholerae extracellular endonuclease i
Author: b. altermark, a. o. smalaas, n. p. willassen, r. helland
- 2gb8.pdb.
oxidoreductase/electron transport 10-mar-06 2gb8
Fe
(NMR, 20 structures)
Title: solution structure of the complex between yeast iso-1- cytochrome c and yeast cytochrome c peroxidase
Author: a. n. volkov, j. a. r. worrall, m. ubbink
Keywords: electron transfer, transient complex
- 2ghi.pdb.
transport protein 27-mar-06 2ghi
Title: crystal structure of plasmodium yoelii multidrug resistance protein 2
Author: a. dong, m. gao, j. choe, y. zhao, j. lew, g. wasney, z. alam, m. melone, i. kozieradzki, m. vedadi, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, j. d. artz, structural genomics consortium (sgc)
Keywords: multidrug resistance protein, mdr, structural genomics, structural genomics consortium, sgc
- 2gin.pdb.
isomerase 29-mar-06 2gin
Na
Title: x-ray structure of the wt allene oxide cyclase 2 from arabidopsis thaliana
Author: e. hofmann, f. schaller, p. zerbe
- 2gt7.pdb.
hydrolase 27-apr-06 2gt7
Title: crystal structure of sars coronavirus main peptidase at ph 6.0 in the space group p21
Author: t. -w. lee, m. m. cherney, c. huitema, j. liu, k. e. james, j. c. powers, l. d. eltis, m. n. g. james
Keywords: 3c-like, n-finger, chymotrypsin-like fold, long loop, alpha-helical domain, dimer, catalytic dyad, specificity pockets
- 2gt8.pdb.
hydrolase 27-apr-06 2gt8
Title: crystal structure of sars coronavirus main peptidase (with an additional ala at the n-terminus of each protomer) in the space group p43212
Author: t. -w. lee, m. m. cherney, c. huitema, j. liu, k. e. james, j. c. powers, l. d. eltis, m. n. g. james
Keywords: 3c-like, n-finger, chymotrypsin-like fold, long loop, alpha-helical domain, dimer, catalytic dyad, specificity pockets
- 2gtb.pdb.
hydrolase 27-apr-06 2gtb
Title: crystal structure of sars coronavirus main peptidase (with an additional ala at the n-terminus of each protomer) inhibited by an aza-peptide epoxide in the space group p43212
Author: t. -w. lee, m. m. cherney, c. huitema, j. liu, k. e. james, j. c. powers
Keywords: 3c-like, n-finger, chymotrypsin-like fold, long loop, alpha-helical domain, dimer, catalytic dyad, specificity pockets
- 2h1r.pdb.
transferase 16-may-06 2h1r
Title: crystal structure of a dimethyladenosine transferase from plasmodium falciparum
Author: a. dong, j. lew, h. ren, e. sundararajan, y. zhao, g. wasney, m. vedadi, i. kozieradski, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, w. qiu, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium
- 2h2y.pdb.
structural genomics, unknown function 19-may-06 2h2y
Title: crystal structure of ubiquitin conjugating enzyme e2 from plasmodium falciparum
Author: w. qiu, a. dong, y. zhao, j. lew, i. kozieradski, e. sundararajan, m. melone, g. wasney, m. vedadi, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. bochkarev, r. hui, structural genomics consortium (sgc)
Keywords: unknown function, structural genomics consortium, sgc
- 2h66.pdb.
structural genomics/oxidoreductase 30-may-06 2h66
Title: the crystal structure of plasmodium vivax 2-cys peroxiredoxin
Author: a. k. wernimont, a. dong, y. zhao, j. lew, m. melone, i. kozieradzki, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, j. d. artz, structural genomics consortium (sgc)
Keywords: vivax, peroxiredoxin, structural genomics, structural genomics consortium, sgc
- 2hd9.pdb.
structural genomics, unknown function 20-jun-06 2hd9
Ca
Title: crystal structure of ph1033 from pyrococcus horikoshii ot3
Author: m. sugahara, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2her.pdb.
transferase 21-jun-06 2her
Mg
Title: cryptosporidium parvum putative polyprenyl pyrophosphate synthase (cgd4_2550) in complex with zoledronate
Author: m. chruszcz, j. artz, h. zheng, a. dong, j. dunford, j. lew, y. zhao, i. kozieradski, k. l. kavanaugh, u. opperman, m. sundstrom, j. weigelt, a. edwards, c. arrowsmith, a. bochkarev, r. hui, w. minor, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2hh0.pdb.
immune system 27-jun-06 2hh0
Title: structure of an anti-prp fab, p-clone, in complex with its cognate bovine peptide epitope.
Author: z. k. kanyo
Keywords: prp, fab
- 2hjr.pdb.
oxidoreductase 30-jun-06 2hjr
Title: crystal structure of cryptosporidium parvum malate dehydrogenase
Author: a. k. wernimont, a. dong, j. lew, a. hassani, h. ren, w. qiu, i. kozieradzki, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
Keywords: malaria, cryptosporidium parvum, structural genomics, structural genomics consortium, sgc
- 2hky.pdb.
hydrolase 06-jul-06 2hky
(NMR, 15 structures)
Title: nmr solution structure of human rnase 7
Author: y. -c. huang, c. chen, y. -c. lou
Keywords: antimicrobial activity
- 2hte.pdb.
transferase 25-jul-06 2hte
U
Title: the crystal structure of spermidine synthase from p. falciparum in complex with 5'-methylthioadenosine
Author: w. qiu, a. dong, h. ren, h. wu, g. wasney, m. vedadi, j. lew, i. kozieradski, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. n. plotnikov, a. bochkarev, r. hui, structural genomics consortium (sgc)
Keywords: spermidine synthase, structural genomics consortium, sgc
- 2hvg.pdb.
lyase 28-jul-06 2hvg
Se
Title: crystal structure of adenylosuccinate lyase from plasmodium vivax
Author: a. k. wernimont, a. dong, j. lew, g. a. wasney, m. vedadi, h. ren, z. alam, w. qiu, i. kozieradzki, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2hy1.pdb.
hydrolase 04-aug-06 2hy1
Mn Fe
Title: crystal structure of rv0805
Author: a. r. shenoy, m. capuder, p. draskovic, d. lamba, s. s. visweswariah, m. podobnik
Keywords: camp, phosphodiesterase, bi-nuclear active site
- 2hyo.pdb.
hydrolase 07-aug-06 2hyo
Mn Fe
Title: crystal structure of rv0805 n97a mutant
Author: a. r. shenoy, m. capuder, p. draskovic, d. lamba, s. s. visweswariah, m. podobnik
Keywords: camp, phosphodiesterase, bi-nuclear active site
- 2hyp.pdb.
hydrolase 07-aug-06 2hyp
Mn Br Fe As
Title: crystal structure of rv0805 d66a mutant
Author: a. r. shenoy, m. capuder, p. draskovic, d. lamba, s. s. visweswariah, m. podobnik
Keywords: camp, phosphodiesterase, bi-nuclear active site
- 2i61.pdb.
toxin 27-aug-06 2i61
Li
Title: depressant anti-insect neurotoxin, lqhit2 from leiurus quinquestriatus hebraeus
Author: f. frolow, m. gurevitz, i. karbat, m. turkov, d. gordon
Keywords: depressant, anti-insect, sodium channel modifer
- 2i7n.pdb.
transferase 31-aug-06 2i7n
Title: crystal structure of human pank1 alpha: the catalytic core domain in complex with accoa
Author: b. hong, l. wang, w. tempel, p. loppnau, a. allali-hassani, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park
- 2i7p.pdb.
transferase 31-aug-06 2i7p
Title: crystal structure of human pank3 in complex with accoa
Author: b. hong, l. wang, l. shen, w. tempel, p. loppnau, p. finerty, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2iae.pdb.
hydrolase 07-sep-06 2iae
Mn
Title: crystal structure of a protein phosphatase 2a (pp2a) holoenzyme.
Author: u. s. cho, w. xu
Keywords: phosphatase, pp2a, b56, tumor suppressor, methylation, crystal structure
- 2ibb.pdb.
protein binding 11-sep-06 2ibb
Title: crystal structure of the first and second fniii domains of ihog
Author: j. s. mclellan, d. j. leahy
Keywords: hedgehog, fibronectin type iii
- 2ibg.pdb.
protein binding 11-sep-06 2ibg
Title: crystal structure of hedgehog bound to the fniii domains of ihog
Author: j. s. mclellan, d. j. leahy
Keywords: hedgehog, fibronectin type iii
- 2ic2.pdb.
protein binding 12-sep-06 2ic2
Se
Title: crystal structure of the first fniii domain of ihog
Author: j. s. mclellan, d. j. leahy
Keywords: hedgehog, fibronectin type iii
- 2ieg.pdb.
transferase 19-sep-06 2ieg
Cl
Title: crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Author: a. m. birch, p. w. kenny, n. g. oikonomakos, l. otterbein, p. schofield, p. r. o. whittamore, d. p. whalley, s. rowsell, r. pauptit, a. pannifer, j. breed, c. minshull
Keywords: glypho, diabetes
- 2iei.pdb.
transferase 19-sep-06 2iei
Cl
Title: crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Author: a. m. birch, p. w. kenny, n. g. oikonomakos, l. otterbein, p. schofield, p. r. o. whittamore, d. p. whalley, s. rowsell, r. pauptit, a. pannifer, j. breed, c. minshull
Keywords: diabetes, glucose
- 2ihw.pdb.
transferase 27-sep-06 2ihw
Cl
Title: crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), apo form
Author: m. kato, r. m. wynn, j. l. chuang, c. a. brautigam, m. custorio, d. t. chuang
Keywords: homo trimer, apo form
- 2ii3.pdb.
transferase 27-sep-06 2ii3
Cl
Title: crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form
Author: m. kato, r. m. wynn, j. l. chuang, c. a. brautigam, m. custorio, d. t. chuang
Keywords: homo trimer, oxidized coa-bound form
- 2ii4.pdb.
transferase 27-sep-06 2ii4
Cl
Title: crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), coenzyme a- bound form
Author: m. kato, r. m. wynn, j. l. chuang, c. a. brautigam, m. custorio, d. t. chuang
Keywords: homo trimer, coa-bound form
- 2ii5.pdb.
transferase 27-sep-06 2ii5
Cl
Title: crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), isobutyryl- coenzyme a-bound form
Author: m. kato, r. m. wynn, j. l. chuang, c. a. brautigam, m. custorio, d. t. chuang
Keywords: homo trimer, isobutyryl-coa-bound form
- 2ijc.pdb.
structural genomics, unknown function 29-sep-06 2ijc
Se
Title: the crystal structure of a conserved hypothetical protein pa0269 from pseudomonas aeruginosa
Author: t. a. binkowski, x. xu, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, hypothetical protein, psi-2, protein structure initiative, midwest center for structural genomics
- 2ims.pdb.
apoptosis 04-oct-06 2ims
Zn Se
Title: the x-ray structure of a bak homodimer reveals an inhibitory zinc binding site
Author: t. moldoveanu, q. liu, a. tocilj, m. watson, g. c. shore, k. b. gehring
- 2inu.pdb.
lyase 09-oct-06 2inu
Se
Title: crystal structure of inulin fructotransferase in the absence of substrate
Author: s. rhee, w. s. jung
- 2inv.pdb.
lyase 09-oct-06 2inv
Se
Title: crystal structure of inulin fructotransferase in the presence of di-fructose
Author: s. rhee, w. s. jung
Keywords: protein-carbohydrate complex
- 2io7.pdb.
ligase, hydrolase 10-oct-06 2io7
Mg
Title: e. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and amppnp
Author: c. h. pai, b. y. chiang, t. p. ko, c. m. chong, f. j. yen, j. k. coward, a. h. - j. wang, c. h. lin
- 2io8.pdb.
ligase, hydrolase 10-oct-06 2io8
Mg
Title: e. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and adp
Author: c. h. pai, b. y. chiang, t. p. ko, c. c. chou, c. m. chong, f. j. yen, j. k. coward, a. h. -j. wang, c. h. lin
- 2io9.pdb.
ligase, hydrolase 10-oct-06 2io9
Mg
Title: e. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ ,gsh and adp
Author: c. h. pai, b. y. chiang, t. p. ko, c. c. chou, c. m. chong, f. j. yen, j. k. coward, a. h. -j. wang, c. h. lin
- 2ioa.pdb.
ligase, hydrolase 10-oct-06 2ioa
Mg
Title: e. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and adp and phosphinate inhibitor
Author: c. h. pai, b. y. chiang, t. p. ko, c. c. chou, c. m. chong, f. j. yen, j. k. coward, a. h. -j. wang, c. h. lin
- 2iob.pdb.
ligase, hydrolase 10-oct-06 2iob
Title: e. coli bifunctional glutathionylspermidine synthetase/amidase apo protein
Author: c. h. pai, b. y. chiang, t. p. ko, c. c. chou, c. m. chong, f. j. yen, j. k. coward, a. h. -j. wang, c. h. lin
- 2iq8.pdb.
structural genomics, unknown function 13-oct-06 2iq8
Mg Se
Title: the crystal structure of putative prephenate dehydratase from staphylococcus aureus subsp. aureus mu50
Author: k. tan, r. zhang, h. li, m. gu, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: sav1915, prephenate dehydratase, staphylococcus aureus subsp. aureus mu50, structural genomics, psi-2, midwest center for structural genomics, mcsg, protein structure initiative
- 2iqh.pdb.
viral protein 13-oct-06 2iqh
Title: influenza a virus nucleoprotein np at 3.2a resolution
Author: q. ye, y. j. tao
Keywords: rna binding, nls, polymerase binding
- 2ita.pdb.
photosynthesis,membrane protein 19-oct-06 2ita
(NMR, 10 structures)
Title: solution structure of pufx from rhodobacter sphaeroides
Author: r. b. tunnicliffe, e. c. ratcliffe, c. n. hunter, m. p. williamson
- 2ite.pdb.
metal binding protein 19-oct-06 2ite
Se
Title: crystal structure of the isda neat domain from staphylococcus aureus
Author: j. c. grigg, c. l. vermeiren, d. e. heinrichs, m. e. murphy
Keywords: heme, iron
- 2itf.pdb.
metal binding protein 19-oct-06 2itf
Fe Se
Title: crystal structure isda neat domain from staphylococcus aureus with heme bound
Author: j. c. grigg, c. l. vermeiren, d. e. heinrichs, m. e. murphy
Keywords: heme, iron
- 2iuj.pdb.
oxidoreductase 05-jun-06 2iuj
Fe
Title: crystal structure of soybean lipoxygenase-b
Author: b. youn, g. e. sellhorn, r. j. mirchel, b. j. gaffney, h. d. grimes, c. kang
Keywords: metal-binding, oxidoreductase, soybean lipoxygenase-b, fatty acid biosynthesis, lipid synthesis
- 2iuk.pdb.
oxidoreductase 05-jun-06 2iuk
Fe
Title: crystal structure of soybean lipoxygenase-d
Author: b. youn, g. e. sellhorn, r. j. mirchel, b. j. gaffney, h. d. grimes, c. kang
Keywords: dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-d, fatty acid biosynthesis, lipid synthesis
- 2iuw.pdb.
oxidoreductase 07-jun-06 2iuw
Fe
Title: crystal structure of human abh3 in complex with iron ion and 2-oxoglutarate
Author: o. sundheim, c. b. vagbo, m. bjoras, m. m. l. desousa, v. talstad, p. a. aas, f. drablos, h. e. krokan, j. a. tainer, g. slupphaug
Keywords: dna/rna repair, oxidoreductase, mad, demethylase, polymorphism, beta jellyroll
- 2iuy.pdb.
transferase 08-jun-06 2iuy
Se
Title: crystal structure of avigt4, a glycosyltransferase involved in avilamycin a biosynthesis
Author: c. martinez-fleites, m. proctor, s. roberts, d. n. bolam, h. j. gilbert, g. j. davies
Keywords: transferase, antibiotics, family gt-4, avilamycin a
- 2iv2.pdb.
oxidoreductase 08-jun-06 2iv2
Mo Fe Se
Title: reinterpretation of reduced form of formate dehydrogenase h from e. coli
Author: h. c. a. raaijmakers, m. j. romao
Keywords: molybdopterin guanine dinucleotide, mpt, nad, oxidoreductase, secys, selenium, selenocysteine
- 2iwl.pdb.
transferase 01-jul-06 2iwl
Title: structure of the px domain of phosphoinositide 3-kinase- c2alpha
Author: d. karathanassis, j. bravo, r. l. williams
Keywords: kinase, px domain, transferase, polymorphism, phosphoinositide 3-kinase, phosphorylation, nuclear protein, phosphoinositide
- 2ix2.pdb.
replication 05-jul-06 2ix2
Title: crystal structure of the heterotrimeric pcna from sulfolobus solfataricus
Author: g. j. williams, k. johnson, s. a. mcmahon, l. carter, m. oke, h. liu, g. l. taylor, m. f. white, j. h. naismith
Keywords: pcna, dna-binding, dna replication, replication
- 2iy0.pdb.
hydrolase/activator complex 11-jul-06 2iy0
Title: senp1 (mutant) sumo1 rangap
Author: l. shen, c. dong, j. h. naismith
Keywords: phosphorylation
- 2iy1.pdb.
hydrolase/nuclear protein complex 11-jul-06 2iy1
Title: senp1 (mutant) full length sumo1
Author: l. shen, c. dong, j. h. naismith
Keywords: ubl conjugation pathway, protease, hydrolase, ubiquitin, thiol protease, protein protein complex, hydrolase/nuclear protein complex
- 2izy.pdb.
transferase 27-jul-06 2izy
Title: molecular basis of akap specificity for pka regulatory subunits
Author: m. g. gold, b. lygren, p. dokurno, n. hoshi, g. mcconnachie, k. tasken, c. r. carlson, j. d. scott, d. barford
Keywords: rii, pka, camp, kinase, acetylation, transferase, camp-binding, phosphorylation, nucleotide-binding
- 2j0a.pdb.
transferase 01-aug-06 2j0a
K
Title: structure of the catalytic domain of mouse manic fringe
Author: m. jinek, y. -w. chen, h. clausen, s. m. cohen, e. conti
Keywords: developmental protein, transmembrane, golgi apparatus, notch signaling, membrane, transferase, glycoprotein, signal-anchor
- 2j0b.pdb.
transferase 01-aug-06 2j0b
Mn K
Title: structure of the catalytic domain of mouse manic fringe in complex with udp and manganese
Author: m. jinek, y. -w. chen, h. clausen, s. m. cohen, e. conti
Keywords: developmental protein, transmembrane, golgi apparatus, notch signaling, membrane, transferase, glycoprotein, signal-anchor
- 2j0n.pdb.
cell invasion 03-aug-06 2j0n
Title: a proteolytically truncated form of shigella flexneri ipad
Author: s. johnson, p. roversi, s. m. lea
Keywords: t3ss, plasmid, virulence, shigella flexneri, type iii secretion, cell invasion
- 2j0o.pdb.
cell invasion 04-aug-06 2j0o
Title: shigella flexneri ipad
Author: s. johnson, p. roversi, s. m. lea
Keywords: type iii secretion, cell invasion, ipad, t3ss, plasmid, invasin, virulence
- 2j13.pdb.
hydrolase 08-aug-06 2j13
Zn As
Title: structure of a family 4 carbohydrate esterase from bacillus anthracis
Author: t. m. gloster, l. oberbarnscheidt, e. j. taylor, g. j. davies
Keywords: peptidoglycan, bacillus anthracis, hydrolase, bacterial cell wall, carbohydrate esterase
- 2j15.pdb.
toxin 09-aug-06 2j15
(NMR, 21 structures)
Title: cyclic mria: an exceptionally stable and potent cyclic conotoxin with a novel topological fold that targets the norepinephrine transporter.
Author: e. s. lovelace, c. j. armishaw, m. l. colgrave, m. e. walstrom, p. f. alewood, n. l. daly, d. j. craik
- 2j18.pdb.
oxidoreductase 09-aug-06 2j18
Mn Br Fe
Title: chloroperoxidase mixture of ferric and ferrous states (low dose data set)
Author: t. beitlich, k. kuhnel, c. schulze-briese, r. l. shoeman, i. schlichting
Keywords: glycoprotein, metal-binding, oxidoreductase, iron, heme, chloride, manganese, peroxidase
- 2j19.pdb.
oxidoreductase 09-aug-06 2j19
Mn Br Fe
Title: ferrous chloroperoxidase (high dose data set)
Author: t. beitlich, k. kuhnel, c. schulze-briese, r. l. shoeman, i. schlichting
Keywords: manganese, peroxidase, glycoprotein, metal-binding, oxidoreductase, iron, heme, chloride
- 2j2s.pdb.
transcription regulation 17-aug-06 2j2s
Zn
(NMR, 20 structures)
Title: solution structure of the nonmethyl-cpg-binding cxxc domain of the leukaemia-associated mll histone methyltransferase
Author: m. d. allen, c. g. grummitt, c. hilcenko, s. young-min, l. m. tonkin, c. m. johnson, m. bycroft, a. j. warren
Keywords: proto-oncogene, nuclear protein, phosphorylation, cpg dinucleotide, alternative splicing
- 2j2z.pdb.
chaperone/surface active protein 17-aug-06 2j2z
Co
Title: x-ray structure of the chaperone papd in complex with the pilus terminator subunit paph at 2.3 angstrom resolution
Author: d. verger, e. miller, h. remaut, g. waksman, s. hultgren
Keywords: pilus termination, immunoglobulin domain, paph, papd, fimbria, chaperone, p5 pocket, chaperone/ surface active protein complex
- 2j58.pdb.
membrane protein 12-sep-06 2j58
Se
Title: the structure of wza
Author: c. dong, j. h. naismith
Keywords: membrane protein
- 2j5o.pdb.
recombination 19-sep-06 2j5o
(NMR, 20 sructures)
Title: pseudomonas aeruginosa ftsk gamma domain
Author: v. sivanathan, m. d. allen, c. debekker, r. baker, l. arciszewska, s. m. freund, m. bycroft, j. lowe, d. j. sherratt
Keywords: kops, xercd, recombination, dna segregation, bacterial cell division
- 2j5p.pdb.
recombination 19-sep-06 2j5p
(NMR, 20 structures)
Title: e. coli ftsk gamma domain
Author: v. sivanathan, m. d. allen, c. de bekker, r. baker, l. arciszewska, s. m. freund, m. bycroft, j. lowe, d. j. sherratt
Keywords: kops, xercd, recombination, dna segregation, bacterial cell division
- 2j7a.pdb.
oxidoreductase 06-oct-06 2j7a
Fe Ca
Title: crystal structure of cytochrome c nitrite reductase nrfha complex from desulfovibrio vulgaris
Author: m. l. rodrigues, t. oliveira, i. a. c. pereira, m. archer
Keywords: cytochrome c nitrite reductase, nrfa, nrfh, napc/nirt family, membrane complex, oxidoreductase
- 2j83.pdb.
hydrolase 18-oct-06 2j83
Zn Ca
Title: ulilysin metalloprotease in complex with batimastat.
Author: r. garcia-castellanos, c. tallant, a. marrero, m. sola, u. baumann, f. x. gomis-ruth
Keywords: igfbp protease, metalloprotease, hypothetical protein, hydroxamate inhibitor, igf, bb-94, cancer, hydrolase, metzincin, pappalysin
- 2j92.pdb.
hydrolase 01-nov-06 2j92
Title: 3c protease from type a10(61) foot-and-mouth disease virus- crystal packing mutant (k51q)
Author: t. r. sweeney, j. r. birtley, r. j. leatherbarrow, s. curry
Keywords: chymotrypsin-like cysteine protease, hydrolase, thiol protease, rna replication
- 2jac.pdb.
glutaredoxin 27-nov-06 2jac
Title: glutaredoxin grx1p c30s mutant from yeast
Author: k. o. hakansson, j. r. winther
Keywords: redox-active center, transport, glutathione, glutaredoxin
- 2jad.pdb.
electron transport 27-nov-06 2jad
Title: yellow fluorescent protein - glutaredoxin fusion protein
Author: k. o. hakansson, j. r. winther
Keywords: electron transport, redox-active center, yeast, grx1p, transport, glutaredoxin
- 2jag.pdb.
membrane protein 28-nov-06 2jag
Cl
Title: l1-intermediate of halorhodopsin t203v
Author: w. gmelin, k. zeth, r. efremov, j. heberle, j. tittor, d. oesterhelt
Keywords: chloride pump, ion transport, membrane protein, sensory transduction, membrane, chloride, receptor, ion pump, transport, photoreceptor protein, transmembrane, retinal protein, intermediate l1
- 2jbh.pdb.
transferase 07-dec-06 2jbh
Ca As
Title: human phosphoribosyl transferase domain containing 1
Author: m. welin, p. stenmark, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, h. eklund, u. b. ericsson, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, m. hogbom, i. johansson, t. karlberg, t. kotenyova, m. moche, m. e. nilsson, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, j. weigelt, p. nordlund
Keywords: prtfdc1, transferase, purine salvage
- 2jbj.pdb.
hydrolase 07-dec-06 2jbj
Cl Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) in complex with 2-pmpa (2-phophonomethyl-pentanedioic acid)
Author: j. r. mesters, k. henning, r. hilgenfeld
Keywords: signal- anchor, metal- binding, metalloprotease, prostate cancer, carboxypeptidase, alternative splicing, alternative splicing
- 2jbk.pdb.
hydrolase 07-dec-06 2jbk
Cl Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) in complex with quisqualic acid (quisqualate, alpha-amino-3,5- dioxo-1,2,4-oxadiazolidine-2-propanoic acid)
Author: j. r. mesters, k. henning, r. hilgenfeld
Keywords: signal- anchor, metal- binding, metalloprotease, prostate cancer, carboxypeptidase,
- 2nn6.pdb.
hydrolase/transferase 23-oct-06 2nn6
Title: structure of the human rna exosome composed of rrp41, rrp45, rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
Author: c. d. lima
Keywords: exosome, pm/scl, exoribonuclease, phosphorolytic, ribonuclease
- 2np0.pdb.
hydrolase 26-oct-06 2np0
Cl Zn Ca
Title: crystal structure of the botulinum neurotoxin type b complexed with synaptotagamin-ii ectodomain
Author: q. chai, j. w. arndt, r. c. stevens
Keywords: neurotoxin, synaptotagamin, receptor
- 2np8.pdb.
transferase 26-oct-06 2np8
F
Title: structural basis for the inhibition of aurora a kinase by a novel class of high affinity disubstituted pyrimidine inhibitors
Author: l. w. tari, i. d. hoffman, d. c. bensen, m. j. hunter, j. nix, k. j. nelson, d. e. mcree, r. v. swanson
Keywords: aik, aurora 2 kinase, kinase, kinase inhibitor
- 2nps.pdb.
transport protein 30-oct-06 2nps
Title: crystal structure of the early endosomal snare complex
Author: d. zwilling, a. cypionka, w. h. pohl, d. fasshauer, p. j. walla, m. c. wahl, r. jahn
Keywords: snare complex, early endosomal snare complex, syntaxin 6, syntaxin 13, vti1a, vamp4
- 2nrg.pdb.
photosynthesis,membrane protein 02-nov-06 2nrg
(NMR, minimized average structure)
Title: solution structure of pufx from rhodobacter sphaeroides (minimised average)
Author: r. b. tunnicliffe, e. c. ratcliffe, c. n. hunter, m. p. williamson
- 2ns1.pdb.
structural genomics, unknown function 02-nov-06 2ns1
Title: crystal structure of the e. coli ammonia channel amtb complexed with the signal transduction protein glnk
Author: f. gruswitz, j. o'connell iii, r. m. stroud, center for structures of membrane proteins (csmp)
Keywords: membrane protein, ammonia, channel, regulatory, inhibitor, signal protein, adp, bog, structural genomics, psi-2, protein structure initiative, center for structures of membrane proteins, csmp
- 2nsx.pdb.
hydrolase 06-nov-06 2nsx
Title: structure of acid-beta-glucosidase with pharmacological chaperone provides insight into gaucher disease
Author: r. l. lieberman, g. a. petsko, d. ringe
- 2nt0.pdb.
hydrolase 06-nov-06 2nt0
Title: acid-beta-glucosidase low ph, glycerol bound
Author: r. l. lieberman, g. a. petsko, d. ringe
Keywords: glucocerebrosidase, glucosylceramide, hydrolysis, gaucher disease
- 2nt1.pdb.
hydrolase 06-nov-06 2nt1
Title: structure of acid-beta-glucosidase at neutral ph
Author: r. l. lieberman, g. a. petsko, d. ringe
Keywords: cerezyme, glucosylceramide, gaucher disease
- 2ntu.pdb.
proton transport 08-nov-06 2ntu
Title: bacteriorhodopsin, wild type, before illumination
Author: j. k. lanyi, b. schobert
Keywords: membrane protein, retinal protein, lipids, photoreceptor, haloarchaea, 7-transmembrane, serpentine, ion transport
- 2ntw.pdb.
proton transport 08-nov-06 2ntw
Title: bacteriorhodopsin, wild type, after illumination to produce the l intermediate
Author: j. k. lanyi, b. schobert
Keywords: membrane protein, retinal protein, lipids, photoreceptor, haloarchaea, 7-transmembrane, serpentine, ion transport,photointermediate
- 2nuv.pdb.
metal binding protein 10-nov-06 2nuv
Zn Fe
Title: crystal structure of the complex of c-terminal lobe of bovine lactoferrin with atenolol at 2.25 a resolution
Author: r. mir, n. singh, m. sinha, s. sharma, p. kaur, t. p. singh
Keywords: c-lobe
- 2nvy.pdb.
transcription 13-nov-06 2nvy
Mn Zn
Title: rna polymerase ii form ii in 150 mm mn+2
Author: d. wang, d. a. bushnell, k. d. westover, c. d. kaplan, r. d. kornberg
Keywords: mrna, multiprotein complex, molecular machine, dna
- 2nx9.pdb.
lyase 17-nov-06 2nx9
Zn
Title: crystal structure of the carboxyltransferase domain of the oxaloacetate decarboxylase na+ pump from vibrio cholerae
Author: r. studer, p. dimroth
Keywords: carboxyltransferase structure, biotin enzymes, zn2+ binding site, tim-barrel fold
- 2nxe.pdb.
transferase 17-nov-06 2nxe
Title: t. thermophilus ribosomal protein l11 methyltransferase (prma) in complex with s-adenosyl-l-methionine
Author: h. demirci, s. t. gregory, a. e. dahlberg, g. jogl
Keywords: postranslational modification
- 2nxj.pdb.
transferase 17-nov-06 2nxj
Titl