Recent PDB releases or updates: week of 22 December 2006
- 1sjw.pdb.
lyase 04-mar-04 1sjw
Title: structure of polyketide cyclase snoal
Author: a. sultana, p. kallio, a. jansson, j. s. wang, j. neimi, p. mantsala, g. schneider
Keywords: nogalamycin, snoal, crystal structure, aldol condensation
- 1u0y.pdb.
chaperone 14-jul-04 1u0y
Title: n-domain of grp94, with the charged domain, in complex with the novel ligand n-propyl carboxyamido adenosine
Author: d. t. gewirth, r. m. immormino
Keywords: hsp90, bergerat, chaperone, endoplasmic reticulum, neca, adenosine, npca
- 1unl.pdb.
cyclin dependent kinase 10-sep-03 1unl
Title: structural mechanism for the inhibition of cd5-p25 from the roscovitine, aloisine and indirubin.
Author: m. mapelli, c. crovace, l. massimiliano, a. musacchio
Keywords: inhibitor, atp-analogue, neurodegenerative diseases
- 1vgj.pdb.
ligase 27-apr-04 1vgj
Se
Title: crystal structure of 2'-5' rna ligase from pyrococcus horikoshii
Author: m. yao, h. morita, a. okada, i. tanaka
Keywords: ligt-like, structural genomics
- 1wmg.pdb.
apoptosis 09-jul-04 1wmg
Se
Title: crystal structure of the unc5h2 death domain
Author: n. handa, k. murayama, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: death domain, apoptosis, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1wyg.pdb.
oxidoreductase 14-feb-05 1wyg
Fe Ca
Title: crystal structure of a rat xanthine dehydrogenase triple mutant (c535a, c992r and c1324s)
Author: t. nishino, k. okamoto, y. kawaguchi, h. hori, t. matsumura, b. t. eger, e. f. pai, t. nishino
- 1xmx.pdb.
structural genomics, unknown function 04-oct-04 1xmx
Mg
Title: crystal structure of protein vc1899 from vibrio cholerae
Author: c. chang, a. joachimiak, r. wu, midwest center for structural genomics (mcsg)
Keywords: mcsg, protein structure initiative, structural genomics, psi, midwest center for structural genomics
- 1z7a.pdb.
unknown function 24-mar-05 1z7a
Se
Title: crystal structure of probable polysaccharide deacetylase from pseudomonas aeruginosa pao1
Author: c. chang, t. skarina, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: psi, protein structure initiative, midwest center for structural genomics, mcsg
- 1zno.pdb.
structural genomics, unknown function 11-may-05 1zno
Mg Se
Title: crystal structure of vc702 from vibrio cholerae, northeast structural genomics consortium target: vcp1
Author: s. ni, f. forouhar, d. e. bussiere, h. robinson, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: homodimer, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 1zpy.pdb.
structural genomics, unknown function 18-may-05 1zpy
Se
Title: crystal structure of protein ne0167 from nitrosomonas europaea
Author: c. chang, e. evdokimova, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg, hypothetical protein, psi, protein structure initiative, midwest center for structural genomics
- 1zwy.pdb.
structural genomics, unknown function 06-jun-05 1zwy
Se
Title: crystal structure of protein vc0702 from vibrio cholerae
Author: c. chang, r. wu, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2af5.pdb.
de novo protein, immune system 25-jul-05 2af5
Title: 2.5a x-ray structure of engineered ospa protein
Author: k. makabe, d. mcelheny, v. tereshko, a. hilyard, a. koide, s. koide
Keywords: beta-hairpin, repeat protein
- 2apl.pdb.
structural genomics, unknown function 16-aug-05 2apl
Se
Title: crystal structure of protein pg0816 from porphyromonas gingivalis
Author: c. chang, p. quartey, s. moy, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: porphyromonas gingivalis , psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2atz.pdb.
structural genomics, unknown function 26-aug-05 2atz
Se
Title: crystal structure of protein hp0184 from helicobacter pylori
Author: c. chang, x. xu, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: helicobacter pylori, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2b3m.pdb.
structural genomics, unknown function 20-sep-05 2b3m
Title: crystal structure of protein af1124 from archaeoglobus fulgidus
Author: c. chang, t. skarina, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2b3n.pdb.
structural genomics, unknown function 20-sep-05 2b3n
Title: crystal structure of protein af1124 from archaeoglobus fulgidus
Author: c. chang, t. skarina, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2b83.pdb.
oxidoreductase 06-oct-05 2b83
Zn
Title: a single amino acid substitution in the clostridium beijerinckii alcohol dehydrogenase is critical for thermostabilization
Author: e. goihberg, o. dym, israel structural proteomics center (ispc)
Keywords: metal binding, structural genomics, israel structural proteomics center, ispc
- 2bbe.pdb.
structural genomics, unknown function 17-oct-05 2bbe
Title: crystal structure of protein so0527 from shewanella oneidensis
Author: c. chang, l. j. bigelow, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: so0527, structural genomics, psi, protein structure initiative, midwest center for structural genomics
- 2c61.pdb.
hydrolase 06-nov-05 2c61
Title: crystal structure of the non-catalytic b subunit of a-type atpase from m. mazei go1
Author: i. schaefer, s. m. bailer, m. dueser, m. boersch, r. a. bernal, g. grueber, d. stock
Keywords: h+ atpase, a1ao, non-catalytic, hydrolase, atp synthesis, hydrogen ion transport, ion transport, transport
- 2c6c.pdb.
hydrolase 09-nov-05 2c6c
Cl I Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) in complex with gpi-18431 (s)-2-(4- iodobenzylphosphonomethyl)-pentanedioic acid
Author: j. r. mesters, c. barinka, w. li, t. tsukamoto, p. majer, b. s. slusher, j. konvalinka, r. hilgenfeld
Keywords: multifunctional enzyme, polymorphism, signal-anchor, transmembrane, zinc
- 2c6g.pdb.
hydrolase 09-nov-05 2c6g
Cl Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) with bound glutamate
Author: j. r. mesters, c. barinka, w. li, t. tsukamoto, p. majer, b. s. slusher, j. konvalinka, r. hilgenfeld
Keywords: multifunctional enzyme, polymorphism, signal-anchor, transmembrane, zinc
- 2c6p.pdb.
hydrolase 11-nov-05 2c6p
Cl Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) in complex with phosphate anion
Author: j. r. mesters, c. barinka, w. li, t. tsukamoto, p. majer, b. s. slusher, j. konvalinka, r. hilgenfeld
Keywords: multifunctional enzyme, polymorphism, signal-anchor, transmembrane, zinc
- 2c92.pdb.
transferase 09-dec-05 2c92
K
Title: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl) pentane 1 phosphate
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis,mycobacterium tuberculosis,lumazine synthase,inhibitor binding
- 2c94.pdb.
transferase 09-dec-05 2c94
F K
Title: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl) 1,1 difluoropentane-1-phosphate
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis,mycobacterium tuberculosis,lumazine synthase,inhibitor binding
- 2c97.pdb.
transferase 09-dec-05 2c97
Cl K
Title: lumazine synthase from mycobacterium tuberculosis bound to 4-(6-chloro-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl) butyl phosphate
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis,mycobacterium tuberculosis,lumazine synthase,inhibitor binding
- 2c9b.pdb.
transferase 09-dec-05 2c9b
K
Title: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl)
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis,mycobacterium tuberculosis,lumazine synthase,inhibitor binding
- 2c9d.pdb.
transferase 09-dec-05 2c9d
K
(x-ray difraction)
Title: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl) hexane 1-phosphate
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis,mycobacterium tuberculosis,lumazine synthase,inhibitor binding
- 2ca0.pdb.
oxidoreductase 15-dec-05 2ca0
Fe
Title: crystal structure of yc-17-bound cytochrome p450 pikc ( cyp107l1)
Author: l. i. yermalitskaya, y. kim, d. h. sherman, m. r. waterman, l. m. podust
Keywords: pikc,yc-17,macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, oxidoreductase
- 2cei.pdb.
oxidoreductase 07-feb-06 2cei
Zn
Title: recombinant human h ferritin, k86q mutant, soaked with zn
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: ferroxidase,di-iron,non-heme protein,iron storage,oxidoreductase
- 2cgn.pdb.
oxidoreductase 09-mar-06 2cgn
Fe
Title: factor inhibiting hif-1 alpha with succinate
Author: m. a. mcdonough, i. j. clifton, c. j. schofield
Keywords: s-nitrosylation, transcription, transcription activator/inhibitor, transcription regulation
- 2cgo.pdb.
oxidoreductase 09-mar-06 2cgo
Fe
Title: factor inhibiting hif-1 alpha with fumarate
Author: m. a. mcdonough, i. j. clifton, c. j. schofield
Keywords: transcription, transcription activator/inhibitor, transcription regulation, dioxygenase, iron, metal-binding, oxidoreductase
- 2chi.pdb.
oxidoreductase 15-mar-06 2chi
Zn Ca
Title: recombinant human h ferritin, k86q and e27d mutant
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: ferroxidase, di-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation
- 2cih.pdb.
oxidoreductase 21-mar-06 2cih
Zn
Title: recombinant human h ferritin, k86q and e27d mutant, soaked with zn
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: ferroxidase, di-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation
- 2clu.pdb.
oxidoreductase 02-may-06 2clu
Zn Ca
Title: recombinant human h ferritin, k86q and e107d mutant
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: ferroxidase, di-iron non-heme protein, iron storage, oxidoreductase
- 2cn6.pdb.
oxidoreductase 18-may-06 2cn6
Zn Ca
Title: recombinant human h ferritin, k86q and e107d mutant, soaked with zn ions
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: apoferritin, ferroxidase, iron storage, metal-binding, oxidoreductase, phosphorylation, di-iron non-heme protein
- 2cn7.pdb.
oxidoreductase 18-may-06 2cn7
Ca
Title: recombinant human h ferritin, k86q, e27d and e107d mutant
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: apoferritin, ferroxidase, iron storage, metal-binding, oxidoreductase, phosphorylation, di-iron non-heme protein
- 2d54.pdb.
isomerase 28-oct-05 2d54
Zn
Title: crystal structure of methionyl trna synthetase y225a mutant from thermus thermophilus
Author: m. konno, r. takeda, r. takasaka, y. mori, r. ishii, s. yokoyama
Keywords: class 1a aars
- 2d7e.pdb.
hydrolase 18-nov-05 2d7e
Title: crystal structure of n-terminal domain of pria from e.coli
Author: k. sasaki, t. ose, k. maenaka, h. masai, d. kohda
- 2d7f.pdb.
plant protein 19-nov-05 2d7f
Mn Ca
Title: crystal structure of a lectin from canavalia gladiata seeds complexed with alpha-methyl-mannoside and alpha- aminobutyric acid
Author: p. delatorre, b. a. m. rocha, e. p. souza, b. t. freitas, f. b. b. m. moreno, a. h. sampaio, w. f. de azevedo jr. , b. s. cavada
Keywords: nonprotein amino acid, diocleinae
- 2db7.pdb.
transcription 15-dec-05 2db7
Se
Title: crystal structure of hypothetical protein ms0332
Author: h. wang, c. takemoto-hori, k. murayama, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: unknown function, dna binding protein, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbd.pdb.
signaling protein 15-dec-05 2dbd
(NMR, 20 structures)
Title: solution structure of the card domain in human caspase recruitment domain protein 4 (nod1 protein)
Author: k. saito, m. inoue, s. koshiba, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbf.pdb.
signaling protein 15-dec-05 2dbf
(NMR, 20 structures)
Title: solution structure of the death domain in human nuclear factor nf-kappa-b p105 subunit
Author: k. saito, m. inoue, s. koshiba, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbh.pdb.
signaling protein 15-dec-05 2dbh
(NMR, 20 structures)
Title: solution structure of the carboxyl-terminal card-like domain in human tnfr-related death receptor-6
Author: k. saito, m. inoue, s. koshiba, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: tnf receptor superfamily, nf-kappab, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbj.pdb.
transferase, signaling protein 15-dec-05 2dbj
(NMR, 20 structures)
Title: solution structures of the fn3 domain of human proto- oncogene tyrosine-protein kinase mer precursor
Author: m. sato, n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: c-mer, receptor tyrosine kinase mertk, fn3 domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbk.pdb.
signaling protein 15-dec-05 2dbk
(NMR, 20 structures)
Title: solution structures of the sh3 domain of human crk-like protein
Author: m. sato, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dbm.pdb.
transferase, signaling protein 15-dec-05 2dbm
(NMR, 20 structures)
Title: solution structures of the sh3 domain of human sh3- containing grb2-like protein 2
Author: m. sato, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: sh3 domain protein 2a, endophilin 1, een-b1, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2ddi.pdb.
protein binding 30-jan-06 2ddi
(NMR, 20 structures)
Title: nmr structure of the second kunitz domain of human wfikkn1
Author: e. liepinsh, g. otting
- 2ddj.pdb.
protein binding 30-jan-06 2ddj
(NMR, 20 structures)
Title: nmr structure of the second kunitz domain of human wfikkn1
Author: e. liepinsh, g. otting
- 2dsx.pdb.
electron transport 07-jul-06 2dsx
Fe
Title: crystal structure of rubredoxin from desulfovibrio gigas to ultra-high 0.68 a resolution
Author: c. -j. chen, y. -h. lin, y. -c. huang, m. -y. liu
Keywords: desulfovibrio gigas, redox
- 2dv1.pdb.
oxidoreductase 28-jul-06 2dv1
Na Fe
Title: crystal structure of d141e mutant of bpkatg
Author: t. deemagarn, b. wiseman, x. carpena, a. ivancich, i. fita, p. c. loewen
Keywords: catalase-peroxidase, compound i
- 2dv2.pdb.
oxidoreductase 28-jul-06 2dv2
Na Fe
Title: crystal structure of d141e mutant of bpkatg at ph 8.0
Author: t. deemagarn, b. wiseman, x. carpena, a. ivancich, i. fita, p. c. loewen
Keywords: catalase-peroxidase, compound i
- 2dw6.pdb.
lyase 07-aug-06 2dw6
Mg
Title: crystal structure of the mutant k184a of d-tartrate dehydratase from bradyrhizobium japonicum complexed with mg++ and d-tartrate
Author: a. a. fedorov, e. v. fedorov, w. s. yew, b. m. wood, j. a. gerlt, s. c. almo
Keywords: enolase superfamily, d-tartrate, l- tartrate
- 2dw7.pdb.
lyase 07-aug-06 2dw7
Mg
Title: crystal structure of d-tartrate dehydratase from bradyrhizobium japonicum complexed with mg++ and meso- tartrate
Author: a. a. fedorov, e. v. fedorov, w. s. yew, b. m. wood, j. a. gerlt, s. c. almo
Keywords: enolase superfamily, meso-tartrate
- 2e2i.pdb.
transcription/dna/rna 14-nov-06 2e2i
Mg Zn
Title: rna polymerase ii elongation complex in 5 mm mg+2 with 2'- dgtp
Author: d. wang, d. a. bushnell, k. d. westover, c. d. kaplan, r. d. kornberg
Keywords: mrna, multiprotein complex, molecular machine, dna
- 2e30.pdb.
metal binding protein/transport protein 19-nov-06 2e30
Ca
(NMR, 20 structures)
Title: solution structure of the cytoplasmic region of na+/h+ exchanger 1 complexed with essential cofactor calcineurin b homologous protein 1
Author: m. mishima, s. wakabayashi, c. kojima
Keywords: transporter, ef-hand, complex structure
- 2ewj.pdb.
replication/dna 03-nov-05 2ewj
I
Title: escherichia coli replication terminator protein (tus) complexed with dna- locked form
Author: a. j. oakley, m. d. mulcair, p. m. schaeffer, n. e. dixon
Keywords: terminus site, protein-dna interaction, replication arrest
- 2f06.pdb.
structural genomics, unknown function 11-nov-05 2f06
Se
Title: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
Author: c. chang, l. l. volkart, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2f97.pdb.
gene regulation 05-dec-05 2f97
Title: effector binding domain of benm (crystals generated from high ph conditions)
Author: o. c. ezezika, s. haddad, e. neidle, c. momany
Keywords: lysr-type regulator, tetramerization, effector binding domain, inducer binding domain
- 2fac.pdb.
biosynthetic protein 07-dec-05 2fac
Zn
Title: crystal structure of e. coli hexanoyl-acp
Author: a. roujeinikova
Keywords: acyl chain binding, fatty acid biosynthesis
- 2fad.pdb.
biosynthetic protein 07-dec-05 2fad
Zn Na
Title: crystal structure of e. coli heptanoyl-acp
Author: a. roujeinikova
Keywords: acyl chain binding, fatty acid biosynthesis
- 2fae.pdb.
biosynthetic protein 07-dec-05 2fae
Zn
Title: crystal structure of e. coli decanoyl-acp
Author: a. roujeinikova
Keywords: acyl chain binding, fatty acid biosynthesis
- 2fb1.pdb.
structural genomics, unknown function 08-dec-05 2fb1
Se
Title: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
Author: c. chang, e. duggan, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2fe3.pdb.
dna binding protein 15-dec-05 2fe3
Zn
Title: the crystal structure of bacillus subtilis perr-zn reveals a novel zn(cys)4 structural redox switch
Author: d. a. k. traore
Keywords: dna binding protein
- 2fet.pdb.
transferase 16-dec-05 2fet
Title: synthesis of c-d-glycopyranosyl-hydroquinones and- benzoquinones. inhibition of ptp1b. inhibition of and binding to glycogen phosphorylase in the crystal
Author: e. d. chrysina, m. n. kosmopoulou, d. d. leonidas, n. g. oikonomakos
- 2ff5.pdb.
transferase 19-dec-05 2ff5
Title: synthesis of c-d-glycopyranosyl-hydroquinones and- benzoquinones. inhibition of ptp1b. inhibition of and binding to glycogen phosphorylase in the crystal
Author: e. d. chrysina, m. n. kosmopoulou, d. d. leonidas, n. g. oikonomakos
- 2fj9.pdb.
lipid binding protein 02-jan-06 2fj9
Cl Zn Pb
Title: high resolution crystal structure of the unliganded human acbp
Author: j. p. taskinen, d. m. van aalten, j. knudsen, r. k. wierenga
Keywords: acbp
- 2fkx.pdb.
structural protein 05-jan-06 2fkx
(NMR, 18 structures)
Title: ribosomal protein s15 from thermus thermophilus, nmr recalculated structure
Author: t. e. malliavin
Keywords: rna-binding protein, rrna-binding protein
- 2fn3.pdb.
lyase 10-jan-06 2fn3
Mg Ca
Title: high resolution structure of s26a mutant of benzoylformate decarboxylase from pseudomonas putida complexed with thiamine thiazolone diphosphate
Author: a. k. bera, m. s. hasson
Keywords: carbon-carbon, decarboxylase, mandelate catabolism, thiamine thiazolone diphosphate, high resolution
- 2frn.pdb.
structural genomics, unknown function 19-jan-06 2frn
Se
Title: crystal structure of protein ph0793 from pyrococcus horikoshii
Author: c. chang, t. skarina, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: pyrococcus horikoshii, hypothetical protein, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2fs1.pdb.
protein binding 20-jan-06 2fs1
(NMR, 20 structures)
Title: solution structure of psd-1
Author: y. he, d. a. rozak, n. sari, y. chen, p. bryan, j. orban
Keywords: psd-1
- 2fu2.pdb.
structural genomics, unknown function 25-jan-06 2fu2
Se
Title: crystal structure of protein spy2152 from streptococcus pyogenes
Author: c. chang, m. cymborowski, z. otwinowski, w. minor, l. -e. lezondra, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2fwn.pdb.
lyase 02-feb-06 2fwn
Mg Ca
Title: phosphorylation of an active site serine in a thdp- dependent enzyme by phosphonate inactivation
Author: a. k. bera, m. s. hasson
Keywords: carbon-carbon, decarboxylase, phophonated, mandelate catabolism,thiamine diphosphate, high resolution
- 2fx7.pdb.
immune system 03-feb-06 2fx7
Title: crystal structure of hiv-1 neutralizing human fab 4e10 in complex with a 16-residue peptide encompassing the 4e10 epitope on gp41
Author: r. m. f. cardoso, f. m. brunel, s. ferguson, d. r. burton, p. e. dawson, i. a. wilson
Keywords: beta-sandwich, antibody-epitope complex
- 2fx8.pdb.
immune system 03-feb-06 2fx8
Title: crystal structure of hiv-1 neutralizing human fab 4e10 in complex with an aib-induced peptide encompassing the 4e10 epitope on gp41
Author: r. m. f. cardoso, f. m. brunel, s. ferguson, d. r. burton, p. e. dawson, i. a. wilson
Keywords: beta-sandwich, antibody-epitope complex
- 2fx9.pdb.
immune system 03-feb-06 2fx9
Title: crystal structure of hiv-1 neutralizing human fab 4e10 in complex with a thioether-linked peptide encompassing the 4e10 epitope on gp41
Author: r. m. f. cardoso, f. m. brunel, s. ferguson, d. r. burton, p. e. dawson, i. a. wilson
Keywords: beta-sandwich, antibody-epitope complex
- 2fxy.pdb.
hydrolase 07-feb-06 2fxy
(NMR, 15 structures)
Title: solution structure of 55-72 segment of staphylococcal nuclease
Author: m. wang, l. shan, j. f. wang
Keywords: solution structure
- 2fxz.pdb.
hydrolase 07-feb-06 2fxz
(NMR, 15 structures)
Title: solution structure of 97-109 segment of staphylococcal nuclease
Author: m. wang, l. shan, j. f. wang
Keywords: solution structure
- 2ggz.pdb.
lyase activator 24-mar-06 2ggz
Ca
Title: crystal structure of human guanylate cyclase activating protein-3
Author: r. stephen
Keywords: guanylate cyclase activating protein, gcap, gcap3, gcap-3
- 2gmq.pdb.
structural genomics, unknown function 07-apr-06 2gmq
Se
Title: crystal structure of protein ef0006 from enterococcus faecalis
Author: c. chang, l. -e. l. volkart, s. f. moy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2gqt.pdb.
oxidoreductase 21-apr-06 2gqt
Ca
Title: crystal structure of udp-n-acetylenolpyruvylglucosamine reductase (murb) from thermus caldophilus
Author: m. -k. kim, s. h. eom
Keywords: enolpyruvyl-udp-n- acetylglucosamine, flavin adenine dinucleotide, substrate complex, enzyme
- 2gqu.pdb.
oxidoreductase 21-apr-06 2gqu
Title: crystal structure of udp-n-acetylenolpyruvylglucosamine reductase (murb) from thermus caldophilus
Author: s. h. eom, m. -k. kim
Keywords: enolpyruvyl-udp-n- acetylglucosamine, flavin adenine dinucleotide, substrate complex, enzyme
- 2gri.pdb.
viral protein 24-apr-06 2gri
(NMR, 20 structures)
Title: nmr structure of the sars-cov non-structural protein nsp3a
Author: p. serrano, m. s. almeida, m. a. johnson, t herrmann, k. saikatendu, j. joseph, v. subramanian, b. w neuman, m. j buchmeier, r. c. stevens, p. kuhn, k wuthrich, joint center for structural genomics (jcsg)
Keywords: non-structural protein, nsp3, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2ha9.pdb.
structural genomics, unknown function 12-jun-06 2ha9
Se
Title: crystal structure of protein sp0239 from streptococcus pneumoniae
Author: c. chang, c. hatzos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hcv.pdb.
isomerase, metal-binding protein 19-jun-06 2hcv
Zn
Title: crystal structure of l-rhamnose isomerase from pseudomonas stutzeri with metal ion
Author: h. yoshida, m. yamada, g. takada, k. izumori, s. kamitori
Keywords: tim barrel, homo-tetramer, metal-binding protein
- 2het.pdb.
metal binding protein 22-jun-06 2het
Ca
Title: non-myristoylated bovine recoverin (truncated at c- terminus) with calcium bound to ef-hand 3
Author: o. h. weiergraber, j. granzin
Keywords: ef-hand, helix-loop-helix, calcium binding
- 2hfn.pdb.
electron transport 24-jun-06 2hfn
Title: crystal structures of the synechocystis photoreceptor slr1694 reveal distinct structural states related to signaling
Author: h. yuan, s. anderson, s. masuda, v. dragnea, k. moffat, c. e. bauer
Keywords: flavin binding protein, photoreceptor
- 2hfo.pdb.
electron transport 24-jun-06 2hfo
Title: crystal structures of the synechocystis photoreceptor slr1694 reveal distinct structural states related to signaling
Author: h. yuan, s. anderson, s. masuda, v. dragnea, k. moffat, c. e. bauer
Keywords: flavin binding protein, photoreceptor
- 2hg0.pdb.
viral protein 26-jun-06 2hg0
Title: structure of the west nile viruse envelope glycoprotein
Author: g. e. nybakken, c. a. nelson, b. r. chen, m. s. diamond, d. h. fremont
- 2hnc.pdb.
lyase 12-jul-06 2hnc
Hg Zn
Title: crystal structure of the human carbonic anhydrase ii in complex with the 5-amino-1,3,4-thiadiazole-2-sulfonamide inhibitor.
Author: v. menchise, a. di fiore, g. de simone
- 2hu6.pdb.
hydrolase 26-jul-06 2hu6
Zn Ca
Title: crystal structure of human mmp-12 in complex with acetohydroxamic acid and a bicyclic inhibitor
Author: c. mannino, m. nievo, f. machetti, a. papakyriakou, v. calderone, m. fragai, a. guarna
Keywords: matrix metalloproteinase, macrophage metalloelastase, inhibitor, hydroxamic acid, drug design
- 2hw8.pdb.
structural protein/rna 01-aug-06 2hw8
Mg K Se
Title: structure of ribosomal protein l1-mrna complex at 2.1 resolution.
Author: s. tishchenko, e. nikonova, a. nikulin, n. nevskaya, s. volchkov, w. piendl, m. garber, s. nikonov
Keywords: mrna, rna-protein complex
- 2hwj.pdb.
structural genomics, unknown function 01-aug-06 2hwj
Se
Title: crystal structure of protein atu1540 from agrobacterium tumefaciens
Author: c. chang, x. xu, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hxt.pdb.
unknown function 03-aug-06 2hxt
Mg
Title: crystal structure of l-fuconate dehydratase from xanthomonas campestris liganded with mg++ and d- erythronohydroxamate
Author: a. a. fedorov, e. v. fedorov, w. s. yew, j. f. rakus, j. a. gerlt, s. c. almo
Keywords: enolase superfamily, d- erythromohydroxamate
- 2hxu.pdb.
unknown function 03-aug-06 2hxu
Mg
Title: crystal structure of k220a mutant of l-fuconate dehydratase from xanthomonas campestris liganded with mg++ and l- fuconate
Author: a. a. fedorov, e. v. fedorov, w. s. yew, j. f. rakus, j. a. gerlt, s. c. almo
Keywords: enolase superfamily, l-fuconate
- 2i0a.pdb.
hydrolase 10-aug-06 2i0a
Title: crystal structure of kb-19 complexed with wild type hiv-1 protease
Author: m. n. l. nalam, c. a. schiffer, a. ali, k. k. reddy, h. cao, s. g. anjum, t. m. rana
Keywords: hiv-1 protease, protease inhibitors
- 2i0d.pdb.
hydrolase 10-aug-06 2i0d
Title: crystal structure of ad-81 complexed with wild type hiv-1 protease
Author: m. n. l. nalam, c. a. schiffer, a. ali, k. k. reddy, h. cao, s. g. anjum, t. m. rana
Keywords: hiv-1 protease, protease inhibitors
- 2i1j.pdb.
cell adhesion, membrane protein 14-aug-06 2i1j
Cl
Title: moesin from spodoptera frugiperda at 2.1 angstroms resolution
Author: q. li, m. r. nance, j. j. g. tesmer
Keywords: coiled-coil, c-ermad, erm, moesin, radixin, ezrin, merlin, actin binding, masking, regulation, self-inhibition
- 2i1k.pdb.
cell adhesion, membrane protein 14-aug-06 2i1k
Cl
Title: moesin from spodoptera frugiperda reveals the coiled-coil domain at 3.0 angstrom resolution
Author: m. r. nance, j. j. g. tesmer
Keywords: coiled-coil, c-ermad, erm, moesin, radixin, ezrin, merlin, actin binding, masking, regulation, self-inhibition
- 2i1u.pdb.
electron transport 15-aug-06 2i1u
Title: mycobacterium tuberculosis thioredoxin c
Author: g. hall, p. a. mcewan, j. emsley
Keywords: redox protein
- 2i2p.pdb.
ribosome 16-aug-06 2i2p
Mg
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i2t.pdb.
ribosome 16-aug-06 2i2t
Mg Zn
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i2u.pdb.
ribosome 16-aug-06 2i2u
Mg
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i2v.pdb.
ribosome 16-aug-06 2i2v
Mg Zn
Title: crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Author: v. berk, w. zhang, r. d. pai, j. h. d. cate
Keywords: protein-nucleic acid complexes
- 2i45.pdb.
structural genomics, unknown function 21-aug-06 2i45
Se
Title: crystal structure of protein nmb1881 from neisseria meningitidis
Author: c. s. chang, c. hatzos, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i48.pdb.
transport protein 21-aug-06 2i48
Title: crystal structure of bicarbonate transport protein cmpa from synechocystis sp. pcc 6803 in complex with carbonic acid
Author: n. m. koropatkin, t. j. smith, h. b. pakrasi
Keywords: c-clamp, abc transporter, periplasmic solute-binding protein, bicarbonate-binding protein
- 2i49.pdb.
transport protein 21-aug-06 2i49
Title: crystal structure of apo form of bicarbonate transport protein cmpa from synechocystis sp. pcc 6803
Author: n. m. koropatkin, t. j. smith, h. b. pakrasi
Keywords: c-clamp, abc transporter, periplasmic solute-binding protein, bicarbonate-binding protein
- 2i4b.pdb.
transport protein 21-aug-06 2i4b
Ca
Title: crystal structure of bicarbonate transport protein cmpa from synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
Author: n. m. koropatkin, t. j. smith, h. b. pakrasi
Keywords: c-clamp, periplasmic solute-binding protein, abc transporter, bicarbonate, calcium
- 2i4c.pdb.
transport protein 21-aug-06 2i4c
Ca
Title: crystal structure of bicarbonate transport protein cmpa from synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
Author: n. m. koropatkin, t. j. smith, h. b. pakrasi
Keywords: c-clamp, periplasmic solute-binding protein, abc transporter, bicarbonate, calcium
- 2i56.pdb.
isomerase, metal-binding protein 24-aug-06 2i56
Zn
Title: crystal structure of l-rhamnose isomerase from pseudomonas stutzeri with l-rhamnose
Author: h. yoshida, m. yamada, g. takada, k. izumori, s. kamitori
Keywords: tim barrel, homo-tetramer, metal-binding protein
- 2i57.pdb.
isomerase, metal-binding protein 24-aug-06 2i57
Zn
Title: crystal structure of l-rhamnose isomerase from pseudomonas stutzeri in complex with d-allose
Author: h. yoshida, m. yamada, g. takada, k. izumori, s. kamitori
Keywords: tim barrel, homo-tetramer, metal-binding protein
- 2iaj.pdb.
transferase 08-sep-06 2iaj
Mn Na
Title: crystal structure of k103n/y181c mutant hiv-1 reverse transcriptase (rt) in complex with atp
Author: k. das, e. arnold
Keywords: nnrti, nonnucleoside inhibitor, drug resistance, atp, dna polymerization, hiv, aids, drug design
- 2ib5.pdb.
luminescent protein 10-sep-06 2ib5
Se
Title: structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Author: m. c. y. chan, i. bosanac, m. ikura
Keywords: alpha helix, chromoprotein, chromophore, blue, gfp-like protein
- 2ib6.pdb.
luminescent protein 10-sep-06 2ib6
Se
Title: structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Author: m. c. y. chan, i. bosanac, d. ho, g. prive, m. ikura
Keywords: alpha helix, chromoprotein, yellow, chromophore, gfp-like protein
- 2ibm.pdb.
protein transport 11-sep-06 2ibm
Title: a novel dimer interface and conformational changes revealed by an x-ray structure of b. subtilis seca
Author: j. zimmer, w. li, t. a. rapoport
Keywords: seca, signal peptide binding
- 2ic3.pdb.
transferase 12-sep-06 2ic3
Mn
Title: crystal structure of k103n/y181c mutant hiv-1 reverse transcriptase (rt) in complex with nonnucleoside inhibitor hby 097
Author: k. das, e. arnold
Keywords: nnrti, nonnucleoside inhibitor, drug resistance, hiv, aids, drug design
- 2ica.pdb.
cell adhesion 12-sep-06 2ica
Cl
Title: cd11a (lfa1) i-domain complexed with bms-587101 aka 5-[(5s, 9r)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4- dioxo-1,3,7-triazaspiro [4.4]non-7-yl]methyl]-3- thiophenecarboxylicacid
Author: s. sheriff, h. einspahr
Keywords: protein/ligand complex
- 2idj.pdb.
transferase 15-sep-06 2idj
Ca
Title: crystal structure of rat glycine n-methyltransferase apoprotein, monoclinic form
Author: z. luka, s. pakhomova, l. v. loukachevitch, m. egli, m. e. newcomer, c. wagner
Keywords: rat, apoprotein.
- 2idk.pdb.
transferase 15-sep-06 2idk
Title: crystal structure of rat glycine n-methyltransferase complexed with folate
Author: z. luka, s. pakhomova, l. v. loukachevitch, m. egli, m. e. newcomer, c. wagner
Keywords: rat, folate binding
- 2iom.pdb.
transcription, antitumor protein 10-oct-06 2iom
Zn
Title: mouse p53 core domain soaked with 2-propanol
Author: w. c. ho, c. luo, k. zhao, x. chai, m. x. fitzgerald, r. marmorstein
- 2is5.pdb.
structural genomics, unknown function 16-oct-06 2is5
Se
Title: crystal structure of 3 residues truncated version of protein nmb1012 from neisseria meningitides
Author: c. s. chang, h. li, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2iu2.pdb.
oxidoreductase 26-may-06 2iu2
Zn
Title: recombinant human h ferritin, k86q, e27d and e107d mutant, soaked with zn ions
Author: l. toussaint, r. r. crichton, j. p. declercq
Keywords: apoferritin, ferroxidase, iron storage, metal-binding, oxidoreductase, phosphorylation, di-iron non-heme protein
- 2ivd.pdb.
oxidoreductase 12-jun-06 2ivd
Cl F
Title: structure of protoporphyrinogen oxidase from myxococcus xanthus with acifluorfen
Author: h. r. corradi, a. v. corrigall, e. boix, c. g. mohan, e. d. sturrock, p. n. meissner, k. r. acharya
Keywords: porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, haem biosynthesis, heme biosynthesis, fad, porphyria, acifluorfen, flavoprotein
- 2ive.pdb.
oxidoreductase 13-jun-06 2ive
Title: structure of protoporphyrinogen oxidase from myxococcus xanthus
Author: h. r. corradi, a. v. corrigall, e. boix, c. g. mohan, e. d. sturrock, p. n. meissner, k. r. acharya
Keywords: porphyrin biosynthesis, chlorophyll biosynthesis, fad, porphyria, flavoprotein, oxidoreductase, heme biosynthesis, haem biosynthesis
- 2ix7.pdb.
contractile protein/metal binding 07-jul-06 2ix7
Title: structure of apo-calmodulin bound to unconventional myosin v
Author: a. houdusse, j. f. gaucher, s. mui, e. krementsova, k. m. trybus, c. cohen
Keywords: coiled coil, atp-binding, motor protein
- 2j43.pdb.
carbohydrate-binding module 24-aug-06 2j43
Se
Title: alpha-glucan recognition by family 41 carbohydrate-binding modules from streptococcal virulence factors
Author: a. lammerts van bueren, m. higgins, d. wang, r. d. burke, a. b. boraston
Keywords: pullulanase, streptococcal, carbohydrate-binding module, glycogen binding, glycoside hydrolase
- 2j44.pdb.
carbohydrate-binding module 24-aug-06 2j44
Zn
Title: alpha-glucan binding by a streptococcal virulence factor
Author: a. lammerts van bueren, m. higgins, d. wang, r. d. burke, a. b. boraston
Keywords: pullulanase, glycogen binding, streptococcus pneumoniae, carbohydrate-binding module
- 2j5u.pdb.
cell shape regulation 19-sep-06 2j5u
Title: mrec lysteria monocytogenes
Author: f. vandenent, m. leaver, f. bendezu, j. errington, p. deboer, j. lowe
Keywords: cell shape regulation
- 2j6f.pdb.
protein binding 28-sep-06 2j6f
Title: n-terminal sh3 domain of cms (cd2ap human homolog) bound to cbl-b peptide
Author: g. moncalian, n. cardenes, y. l. deribe, m. spinola-amilibia, i. dikic, j. bravo
Keywords: phosphorylation, adaptor protein, egfr downregulation, alternative splicing, cd2 associated protein, protein binding
- 2j6k.pdb.
protein binding 29-sep-06 2j6k
Na
Title: n-terminal sh3 domain of cms (cd2ap human homolog)
Author: g. moncalian, n. cardenes, y. l. deribe, m. spinola-amilibia, i. dikic, j. bravo
Keywords: adaptor protein, egfr downregulation, sh3, sh3 domain, sh3-binding, coiled coil, cd2 associated protein, cytoskeletal rearrangements, surface active protein, signaling protein, protein binding
- 2j6o.pdb.
protein binding 02-oct-06 2j6o
Title: atypical polyproline recognition by the cms n-terminal sh3 domain. cms:cd2 heterotrimer
Author: g. moncalian, n. cardenes, y. l. deribe, m. spinola-amilibia, i. dikic, j. bravo
Keywords: adaptor protein, egfr downregulation, cms, sh3 domain, sh3-binding, coiled coil, sh3 domain recognition, signaling protein, protein binding
- 2j75.pdb.
hydrolase 06-oct-06 2j75
Ca
Title: beta-glucosidase from thermotoga maritima in complex with noeuromycin
Author: t. m. gloster, p. meloncelli, r. stick, d. zechel, g. j. davies
Keywords: hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism, glycoside hydrolase, cellulose degradation
- 2j7i.pdb.
protein binding 09-oct-06 2j7i
Title: atypical polyproline recognition by the cms n-terminal sh3 domain. cms:cd2 heterodimer
Author: g. moncalian, n. cardenes, y. l. deribe, m. spinola-amilibia, i. dikic, j. bravo
Keywords: sh3 domain recognition, protein binding
- 2j7n.pdb.
hydrolase 13-oct-06 2j7n
Mg
Title: structure of the rnai polymerase from neurospora crassa
Author: p. s. salgado, m. r. l. koivunen, e. v. makeyev, d. h. bamford, d. i. stuart, j. m. grimes
Keywords: rnai response, hypothetical protein, rna-directed rna polymerase, hydrolase
- 2j7o.pdb.
hydrolase 13-oct-06 2j7o
Mg
Title: structure of the rnai polymerase from neurospora crassa
Author: p. s. salgado, m. r. l. koivunen, e. v. makeyev, d. h. bamford, d. i. stuart, j. m. grimes
Keywords: rnai response, hypothetical protein, rna-directed rna polymerase, hydrolase
- 2j7p.pdb.
signal recognition 14-oct-06 2j7p
Mg I K
Title: gmppnp-stabilized ng domain complex of the srp gtpases ffh and ftsy
Author: d. m. freymann
Keywords: cell division/complex, signal recognition
- 2j8x.pdb.
hydrolase/inhibitor complex 31-oct-06 2j8x
Title: epstein-barr virus uracil-dna glycosylase in complex with ugi from pbs-2
Author: t. geoui, m. buisson, n. tarbouriech, w. p. burmeister
Keywords: dna repair, lytic protein, epstein-barr virus, uracil-dna glycosylase,hydrolase, uracil-dna glycosylase inhibitor, hydrolase/inhibitor complex
- 2j9i.pdb.
ligase 09-nov-06 2j9i
(cryo-electron microscopy)
Title: lengsin is a survivor of an ancient family of class i glutamine synthetases in eukaryotes that has undergone evolutionary re-engineering for a tissue-specific role in the vertebrate eye lens.
Author: k. wyatt, h. e. white, l. wang, o. a. bateman, c. slingsby, e. v. orlova, g. wistow
- 2ja9.pdb.
hydrolase 24-nov-06 2ja9
Title: structure of the n-terminal deletion of yeast exosome component rrp40
Author: a. oddone, e. lorentzen, j. basquin, a. gasch, v. rybin, e. conti, m. sattler
Keywords: exosome, nuclease, s1 domain, kh domain, hydrolase, rna-binding, exonuclease, nuclear protein, rrna processing, nucleic-acid binding
- 2jac.pdb.
glutaredoxin 29-nov-06 2jac
Title: glutaredoxin grx1p c30s mutant from yeast
Author: k. o. hakansson, j. r. winther
Keywords: redox-active center, transport, glutathione, glutaredoxin
- 2jaf.pdb.
membrane protein 28-nov-06 2jaf
Cl
Title: ground state of halorhodopsin t203v
Author: w. gmelin, k. zeth, r. efremov, j. heberle, j. tittor, d. oesterhelt
Keywords: chloride pump, ion transport, membrane, chloride, receptor, ion pump, transport, sensory transduction, photoreceptor protein, transmembrane, retinal protein, membrane protein
- 2jag.pdb.
membrane protein 29-nov-06 2jag
Cl
Title: l1-intermediate of halorhodopsin t203v
Author: w. gmelin, k. zeth, r. efremov, j. heberle, j. tittor, d. oesterhelt
Keywords: chloride pump, ion transport, membrane protein, sensory transduction, membrane, chloride, receptor, ion pump, transport, photoreceptor protein, transmembrane, retinal protein, intermediate l1
- 2jmu.pdb.
hydrolase 05-dec-06 2jmu
(NMR, 20 structures)
Title: nmr structure of the mouse thiamine triphosphatase
Author: j. song, j. l. markley, center for eukaryotic structural genomics (cesg)
Keywords: structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2nlb.pdb.
antimicrobial protein 20-oct-06 2nlb
Title: human beta-defensin-1 (mutant asn4ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin
- 2nlc.pdb.
antimicrobial protein 20-oct-06 2nlc
Title: human beta-defensin-1 (mutant ser8ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nld.pdb.
antimicrobial protein 20-oct-06 2nld
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nle.pdb.
antimicrobial protein 20-oct-06 2nle
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlf.pdb.
antimicrobial protein 20-oct-06 2nlf
Title: human beta-defensin-1 (mutant leu13glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlg.pdb.
antimicrobial protein 20-oct-06 2nlg
Title: human beta-defensin-1 (mutant lys22glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlh.pdb.
antimicrobial protein 20-oct-06 2nlh
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlp.pdb.
antimicrobial protein 20-oct-06 2nlp
Title: human beta-defensin-1 (mutant gln24glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlq.pdb.
antimicrobial protein 20-oct-06 2nlq
Title: human beta-defensin-1 (mutant lys31ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nls.pdb.
antimicrobial protein 20-oct-06 2nls
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nm1.pdb.
toxin,hydrolase 20-oct-06 2nm1
Title: structure of bont/b in complex with its protein receptor
Author: r. jin, a. rummel, t. binz, a. t. brunger
Keywords: botulism, synaptotagmin
- 2nox.pdb.
oxidoreductase 26-oct-06 2nox
Fe
Title: crystal structure of tryptophan 2,3-dioxygenase from ralstonia metallidurans
Author: y. zhang, s. a. kang, t. mukherjee, s. bale, b. r. crane, t. p. begley, s. e. ealick
Keywords: heme protein
- 2nph.pdb.
hydrolase 27-oct-06 2nph
Title: crystal structure of hiv1 protease in situ product complex
Author: m. v. hosur, a. das, v. prashar
- 2npi.pdb.
transcription 27-oct-06 2npi
Mg Se
Title: clp1-atp-pcf11 complex
Author: c. g. noble, b. beuth, i. a. taylor
Keywords: atp binding, ternary complex
- 2ns0.pdb.
structural genomics, unknown function 02-nov-06 2ns0
Se
Title: crystal structure of protein rha04536 from rhodococcus sp
Author: c. chang, t. skarina, o. onopriyenko, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2nsn.pdb.
apoptosis 05-nov-06 2nsn
Title: crystal structure of caspace activation and recruitment domain (card) of nod1
Author: s. ramaswamy, n. p. coussens
- 2nsq.pdb.
ligase 06-nov-06 2nsq
Title: crystal structure of the c2 domain of the human e3 ubiquitin-protein ligase nedd4-like protein
Author: j. r. walker, g. v. avvakumov, s. xue, c. butler-cole, p. j. finerty jr. , j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: ubl-conjugation pathway, c2 domain, structural genomics consortium, sgc
- 2nv0.pdb.
transferase 10-nov-06 2nv0
Title: structure of the glutaminase subunit pdx2 (yaae) of plp synthase from bacillus subtilis
Author: m. strohmeier, i. tews, i. sinning
Keywords: rossmann fold, glutaminase
- 2nv1.pdb.
lyase 10-nov-06 2nv1
Cl Mg
Title: structure of the synthase subunit pdx1 (yaad) of plp synthase from bacillus subtilis
Author: m. strohmeier, i. tews, i. sinning
Keywords: synthase
- 2nv2.pdb.
lyase/transferase 10-nov-06 2nv2
Cl
Title: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus subtilis
Author: m. strohmeier, i. tews, i. sinning
Keywords: 3-layer(aba) sandwich, plp synthase complex
- 2nvx.pdb.
transcription/dna/rna 13-nov-06 2nvx
Mg Zn
Title: rna polymerase ii elongation complex in 5 mm mg+2 with 2'- dutp
Author: d. wang, d. a. bushnell, k. d. westover, c. d. kaplan, r. d. kornberg
Keywords: mrna, multiprotein complex, molecular machine, dna
- 2nvz.pdb.
transcription/dna/rna 14-nov-06 2nvz
Mg Zn
Title: rna polymerase ii elongation complex with utp, updated 11/2006
Author: d. wang, d. a. bushnell, k. d. westover, c. d. kaplan, r. d. kornberg
Keywords: mrna, multiprotein complex, molecular machine, dna
- 2nw7.pdb.
oxidoreductase 14-nov-06 2nw7
Fe
Title: crystal structure of tryptophan 2,3-dioxygenase (tdo) from xanthomonas campestris in complex with ferric heme. northeast structural genomics target xcr13
Author: f. forouhar, j. l. r. anderson, c. g. mowat, a. hussain, c. bruckmann, s. j. thackray, j. seetharaman, t. tucker, c. k. ho, l. c. ma, k. cunningham, h. janjua, l. zhao, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, s. k. chapman, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nw8.pdb.
oxidoreductase 14-nov-06 2nw8
Mn Fe
Title: crystal structure of tryptophan 2,3-dioxygenase (tdo) from xanthomonas campestris in complex with ferrous heme and tryptophan. northeast structural genomics target xcr13.
Author: f. forouhar, j. l. r. anderson, c. g. mowat, c. bruckmann, s. j. thackray, j. seetharaman, c. k. ho, l. c. ma, k. cunningham, h. janjua, l. zhao, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, s. k. champman, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nw9.pdb.
oxidoreductase 14-nov-06 2nw9
F Mn Fe
Title: crystal structure of tryptophan 2,3-dioxygenase (tdo) from xanthomonas campestris in complex with ferrous heme and 6- fluoro-tryptophan. northeast structural genomics target xcr13
Author: f. forouhar, j. l. r. anderson, c. g. mowat, c. bruckmann, s. j. thackray, j. seetharaman, c. k. ho, l. c. ma, k. cunningham, h. janjua, l. zhao, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, s. k. champman, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nwb.pdb.
oxidoreductase 14-nov-06 2nwb
Fe
Title: crystal structure of a putative 2,3-dioxygenase (so4414) from shewanella oneidensis in complex with ferric heme. northeast structural genomics target sor52.
Author: f. forouhar, j. l. r. anderson, c. g. mowat, a. hussain, j. seetharaman, c. bruckmann, s. j. thackray, n. khan, k. cunningham, h. janjua, l. zhao, r. xiao, l. c. ma, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, s. k. champman, l. tong, northeast structural genomics consortium (nesg)
Keywords: heme-binding protein, hemoprotein, all alpha- helical protein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nwd.pdb.
hydrolase 14-nov-06 2nwd
Title: structure of chemically synthesized human lysozyme at 1 angstrom resolution
Author: t. durek, v. y. torbeev, s. b. h. kent
Keywords: chemical protein synthesis, convergent synthesis
- 2nx2.pdb.
structural genomics, unknown function 16-nov-06 2nx2
Title: crystal structure of hypothetical protein ypsa from bacillus subtilis.
Author: u. a. ramagopal, j. alvarado, m. dickey, c. reyes, r. toro, k. bain, t. gheyi, j. m. sauder, s. k burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2nx4.pdb.
structural genomics, unknown function 16-nov-06 2nx4
Title: the crystal structure of athe putative tetr-family transcriptional regulator rha06780 from rhodococcus sp. rha1.
Author: r. zhang, e. evdokimova, m. kudritskam, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hth dna binding motif, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2nxo.pdb.
structural genomics, unknown function 17-nov-06 2nxo
Title: the crystal structure of a hypothetical protein sco4506 (gene id: q9l0t8) from streptomyces coelicolor
Author: r. tyagi, s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: duf178, nysgxrc, 10093f, psi-2, structural genomics, protein structure initiative, new york structural genomix research consortium
- 2nyr.pdb.
hydrolase 21-nov-06 2nyr
Zn
Title: crystal structure of human sirtuin homolog 5 in complex with suramin
Author: j. r. min, t. antoshenko, a. allali-hassani, a. dong, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2nzc.pdb.
structural genomics/unknown function 22-nov-06 2nzc
Se
Title: the structure of uncharacterized protein tm1266 from thermotoga maritima.
Author: m. e. cuff, e. evdokimova, m. kruditska, a. edwards, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: sturctural genomics, tm1266, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2nzj.pdb.
signaling protein 23-nov-06 2nzj
Cl Mg
Title: the crystal structure of rem1 in complex with gdp
Author: a. p. turnbull, e. papagrigoriou, e. ugochukwu, j. m. elkins, m. soundararajan, x. yang, f. gorrec, c. umeano, e. salah, n. burgess, c. johansson, g. berridge, o. gileadi, j. bray, b. marsden, s. watts, f. von delft, j. weigelt, a. edwards, c. h. arrowsmith, m. sundstrom, d. doyle, structural genomics consortium (sgc)
Keywords: gdp/gtp binding, gtp hydrolysis, rad and gem like gtp binding protein 1, structural genomics, structural genomics consortium, sgc
- 2o08.pdb.
structural genomics, unknown function 27-nov-06 2o08
Fe Se
Title: crystal structure of hypothetical protein (np_242193.1) from bacillus halodurans at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, psi-2, protein structure initiative
- 2o1l.pdb.
hydrolase 29-nov-06 2o1l
Zn Fe
Title: structure of a complex of c-terminal lobe of bovine lactoferrin with disaccharide at 1.97 a resolution
Author: n. singh, s. sharma, m. perbandt, p. kaur, c. betzel, t. p. singh
Keywords: complex
- 2o1m.pdb.
structural genomics, unknown function 29-nov-06 2o1m
Se
Title: crystal structure of the probable amino-acid abc transporter extracellular-binding protein ytmk from bacillus subtilis. northeast structural genomics consortium target sr572
Author: a. p. kuzin, m. su, j. seetharaman, c. x. chen, y. fang, k. cunningham, l. c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2o1n.pdb.
hydrolase 29-nov-06 2o1n
Title: crystal structure of a complex of phospholipase a2 with a peptide ala-ile-ala-ser at 2.8 a resolution
Author: s. kumar, n. singh, s. sharma, p. kaur, t. p. singh
- 2o2g.pdb.
hydrolase 29-nov-06 2o2g
Se
Title: crystal structure of dienelactone hydrolase (yp_324580.1) from anabaena variabilis atcc 29413 at 1.92 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: dienelactone hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2o2k.pdb.
transferase 30-nov-06 2o2k
Title: crystal structure of the activation domain of human methionine synthase isoform/mutant d963e/k1071n
Author: k. r. wolthers, h. s. toogood, t. jowitt, k. r. marshall, d. leys, n. s. scrutton
Keywords: twisted anti-parallel beta sheet, beta-meander region
- 2o2x.pdb.
structural genomics, unknown function 30-nov-06 2o2x
Se
Title: crystal structure of hypothetical protein (np_103874.1) from mesorhizobium loti at 1.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2o2z.pdb.
structural genomics, unknown function 30-nov-06 2o2z
Se
Title: crystal structure of hypothetical protein (np_244435.1) from bacillus halodurans at 2.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2o34.pdb.
structural genomics, unknown function 30-nov-06 2o34
Na Se
Title: crystal structure of the hypothetical protein from desulfovibrio vulgaris hildenborough
Author: v. n. malashkevich, r. toro, j. m. sauder, k. d. schwinn, d. a. thompson, m. e. rutter, m. dickey, c. groshong, k. t. bain, j. m. adams, c. reyes, i. rooney, a. powell, a. boice, t. gheyi, s. ozyurt, s. atwell, s. r. wasserman, s. emtage, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: hypothetical protein, psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2o3b.pdb.
hydrolase/hydrolase inhibitor 01-dec-06 2o3b
Mg Ni
Title: crystal structure complex of nuclease a (nuca) with intra- cellular inhibitor nuia
Author: m. ghosh, g. meiss, a. pingoud, r. e. london, l. c. pedersen
Keywords: nuclease inhibitor, metal complex, non-specific nuclease
- 2o3l.pdb.
structural genomics, unknown function 01-dec-06 2o3l
Se
Title: crystal structure of hypothetical protein (np_979748.1) from bacillus cereus atcc 10987 at 2.05 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2o3s.pdb.
hydrolase 01-dec-06 2o3s
Title: structural basis for formation and hydrolysis of calcium messenger cyclic adp-ribose by human cd38
Author: q. liu, i. a. kriksunov, r. graeff, h. c. lee, q. hao
Keywords: the catalytic pocket, cadpr formation and hydrolysis, substrate binding
- 2o3t.pdb.
hydrolase 01-dec-06 2o3t
Title: structural basis for formation and hydrolysis of calcium messenger cyclic adp-ribose by human cd38
Author: q. liu, i. a. kriksunov, r. graeff, h. c. lee, q. hao
Keywords: the catalytic pocket, cgdpr formation and hydrolysis, substrate binding
- 2o3u.pdb.
hydrolase 01-dec-06 2o3u
Title: structural basis for formation and hydrolysis of calcium messenger cyclic adp-ribose by human cd38
Author: q. liu, i. a. kriksunov, r. graeff, h. c. lee, q. hao
Keywords: the catalytic pocket, ngd binding and hydrolysis
- 2o40.pdb.
hydrolase 02-dec-06 2o40
Title: crystal structure of a chemically synthesized 203 amino acid 'covalent dimer' hiv-1 protease molecule
Author: v. y. torbeev, s. b. h. kent
- 2o52.pdb.
protein transport 05-dec-06 2o52
Mg U
Title: crystal structure of human rab4b in complex with gdp
Author: h. zhu, w. tempel, j. wang, y. shen, r. landry, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: rab, gdp, structural genomics, structural genomics consortium, sgc
- 2o55.pdb.
structural genomics, unknown function 05-dec-06 2o55
Se
Title: crystal structure of a putative glycerophosphodiester phosphodiesterase from galdieria sulphuraria
Author: j. g. mccoy, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: structural genomics, protein structure initiative, psi-2, center for eukaryotic structural genomics, cesg
- 2o57.pdb.
structural genomics, unknown function 05-dec-06 2o57
Se
Title: crystal structure of a putative sarcosine dimethylglycine methyltransferase from galdieria sulphuraria
Author: j. g. mccoy, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi-2, center for eukaryotic structural genomics, cesg
- 2o5a.pdb.
structural genomics, unknown function 05-dec-06 2o5a
Mn Se
Title: crystal structure of q9kd89 from bacillus halodurans. northeast structural genomics target bhr21
Author: j. benach, m. su, j. seetharaman, c. h. ho, h. janjua, k. cunningham, l. - c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2o5r.pdb.
ligase 06-dec-06 2o5r
Cl Se
Title: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17) (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima at 2.5 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: glutamyl-trna synthetase 1, ec 6.1.1.17, glutamate- trna ligase 1, glurs 1, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
- 2o6i.pdb.
hydrolase 07-dec-06 2o6i
Cl Zn
Title: structure of an enterococcus faecalis hd domain phosphohydrolase
Author: i. i. vorontsov, g. minasov, l. shuvalova, j. s. brunzelle, s. moy, f. r. collart, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: hd domain, phosphohydrolase, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2o8r.pdb.
transferase 12-dec-06 2o8r
Se
Title: crystal structure of polyphosphate kinase from porphyromonas gingivalis
Author: y. patskovsky, r. toro, j. m. sauder, m. dickey, j. m. adams, s. ozyurt, s. r. wasserman, s. c. almo, s. k. burley, new york structural genomics research consortium (nysgrc), new york structural genomix research consortium (nysgxrc)
Keywords: structural genomics, protein structure initiative, psi, nysgrc, new york structural genomics research consortium, structural genomics, new york structural genomix research consortium, nysgxrc
- 2o9k.pdb.
gene regulation 13-dec-06 2o9k
Title: wdr5 in complex with dimethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
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