Recent PDB releases or updates: week of 1 December 2006
- 1p7d.pdb.
dna binding protein/dna 01-may-03 1p7d
Title: crystal structure of the lambda integrase (residues 75-356) bound to dna
Author: h. aihara, h. j. kwon, s. e. nunes-duby, a. landy, t. ellenberger
- 1t1f.pdb.
blood clotting 16-apr-04 1t1f
I
Title: crystal structure of native antithrombin in its monomeric form
Author: d. j. d. johnson, j. a. huntington
- 1ul7.pdb.
transferase 10-sep-03 1ul7
(NMR, 20 structures)
Title: solution structure of kinase associated domain 1 of mouse map/microtubule affinity-regulating kinase 3
Author: n. tochio, s. koshiba, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: elkl motif, mark3, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1vpz.pdb.
structural genomics, unknown function 24-nov-04 1vpz
Se
Title: crystal structure of carbon storage regulator homolog (np_249596.1) from pseudomonas aeruginosa at 2.05 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: carbon storage regulator homolog, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1vr0.pdb.
hydrolase 26-jan-05 1vr0
Mg Se
Title: crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from clostridium acetobutylicum at 2.6 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative 2-phosphosulfolactate phosphatase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1vr8.pdb.
signaling protein 16-feb-05 1vr8
Se
Title: crystal structure of gtp binding regulator (tm1622) from thermotoga maritima at 1.75 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: gtp binding regulator, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1wy9.pdb.
metal binding protein 09-feb-05 1wy9
Ca
Title: crystal structure of microglia-specific protein, iba1
Author: m. yamada, y. imai, s. kohsaka, s. kamitori
Keywords: calucium binding
- 1xe3.pdb.
transferase 09-sep-04 1xe3
Cl
Title: crystal structure of purine nucleoside phosphorylase deod from bacillus anthracis
Author: r. grenha, v. m. levdikov, m. fogg, e. v. blagova, j. a. brannigan, a. j. wilkinson, k. s. wilson, structural proteomics in europe (spine)
Keywords: deod, spine, structural genomics, structural proteomics in europe
- 1xp3.pdb.
hydrolase 08-oct-04 1xp3
Zn
Title: crystal structure of endonuclease iv (ba4508) from bacillus anthracis at 2.57a resolution.
Author: m. j. fogg, v. m. levdikov, e. v. blagova, j. a. brannigan, a. j. wilkinson, k. s. wilson, structural proteomics in europe (spine)
Keywords: nfo, dna replication, dna recombination, dna repair, spine, structural genomics, structural proteomics in europe
- 1xq7.pdb.
isomerase 11-oct-04 1xq7
Title: cyclophilin from trypanosoma cruzi bound to cyclosporin a
Author: j. m. caruthers, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: cyclosporin a, isomerase, rotamase, proline, cis, trans, structural genomics, protein structure initiative, psi, structural genomics of pathogenic protozoa consortium, sgpp
- 1xt8.pdb.
transport protein 21-oct-04 1xt8
Title: crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution
Author: a. muller, g. h. thomas, r. horler, j. a. brannigan, e. blagova, v. m. levdikov, m. j. fogg, k. s. wilson, a. j. wilkinson, structural proteomics in europe (spine)
Keywords: cysteine uptake, amino-acid transporter periplasmic solute-binding protein, campylobacter jejuni, spine, structural genomics, structural proteomics in europe
- 1ycn.pdb.
metal binding protein 22-dec-04 1ycn
Title: x-ray structure of annexin from arabidopsis thaliana gene at1g35720
Author: g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, s. t. m. allard, center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg, at1g35720, annexin, membrane-binding, calcium-binding
- 1ydh.pdb.
structural genomics, unknown function 23-dec-04 1ydh
Se
Title: x-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950
Author: g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, s. t. m. allard, center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg, at5g11950, lysine decarboxylase-like protein
- 1ydw.pdb.
structural genomics, unknown function 26-dec-04 1ydw
Se
Title: x-ray structure of gene product from arabidopsis thaliana at4g09670
Author: g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, s. t. m. allard, center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg, at4g09670
- 1yla.pdb.
ligase 19-jan-05 1yla
Title: ubiquitin-conjugating enzyme e2-25 kda (huntington interacting protein 2)
Author: j. choe, g. v. avvakumov, e. m. newman, f. mackenzie, i. kozieradzki, a. bochkarev, m. sundstrom, c. arrowsmith, a. edwards, s. dhe- paganon, structural genomics consortium (sgc)
Keywords: ubiquitin- conjugating enzyme, ligase, structural genomics, sgc, structural genomics consortium
- 1z83.pdb.
transferase 29-mar-05 1z83
Zn
Title: crystal structure of human ak1a in complex with ap5a
Author: p. filippakopoulos, g. bunkoczi, a. jansson, a. schreurs, s. knapp, a. edwards, f. von delft, m. sundstrom, structural genomics consortium (sgc)
Keywords: humna, ap5a, diadenosine pentaphosphate, nucleotide kinase, structural genomics, structural genomics consortium, sgc
- 1zd1.pdb.
transferase 13-apr-05 1zd1
Title: human sulfortransferase sult4a1
Author: a. dong, l. dombrovski, p. loppnau, a. m. edwards, c. h. arrowsmith, m. sundstrom, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: sult4a1, structural genomics, structural genomics consortium
- 2a2j.pdb.
oxidoreductase 22-jun-05 2a2j
Title: crystal structure of a putative pyridoxine 5'-phosphate oxidase (rv2607) from mycobacterium tuberculosis
Author: j. -d. pedelacq, b. -s. rho, c. -y. kim, g. s. waldo, t. p. lekin, b. w. segelke, b. rupp, l. -w. hung, s. -i. kim, t. c. terwilliger, mycobacterium tuberculosis structural proteomics project (xmtb)
Keywords: structural genomics, mycobacterium tuberculosis structural proteomics project, xmtb
- 2af2.pdb.
oxidoreductase 25-jul-05 2af2
Zn
(NMR, 30 structures)
Title: solution structure of disulfide reduced and copper depleted human superoxide dismutase
Author: l. banci, i. bertini, f. cantini, n. d'amelio, e. gaggelli, structural proteomics in europe (spine)
Keywords: solution structure, nmr, homodimeric protein, disulfide bond reduced, copper depleted protein, structural genomics, structural proteomics in europe, spine
- 2ap0.pdb.
ribonucleic acid 15-aug-05 2ap0
(NMR, 20 structures)
Title: solution structure of the c27a scylv p1-p2 frameshifting pseudoknot, 20 lowest energy structures
Author: p. v. cornish, d. p. giedroc
- 2ap5.pdb.
ribonucleic acid 15-aug-05 2ap5
(NMR, minimized average structure)
Title: solution structure of the c27a scylv p1-p2 frameshifting pseudoknot, average structure
Author: p. v. cornish, d. p. giedroc
- 2bq0.pdb.
cell regulator protein 25-apr-05 2bq0
Title: 14-3-3 protein beta (human)
Author: x. yang, j. m. elkins, o. fedorov, e. j. longman, f. sobott, l. j. ball, m. sundstrom, c. arrowsmith, a. edwards, d. a. doyle
Keywords: ywhab, structural genomics, structural genomics consortium, alternative initiation, multigene family, phosphorylation, cell regulator protein
- 2bz7.pdb.
electron transport 06-jun-05 2bz7
Cu
Title: oxidized and reduced structures of a mutant plastocyanin of fern
Author: r. hulsker, e. a. j. thomassen, m. ubbink
Keywords: fern, electron transport, membrane, metal-binding, thylakoid, transport
- 2bzc.pdb.
electron transport 12-aug-05 2bzc
Cu
Title: oxidized and reduced structures of a mutant plastocyanin of fern
Author: r. hulsker, e. a. j. thomassen, m. ubbink
Keywords: fern, chloroplast, copper, electron transport, membrane, metal-binding
- 2c0d.pdb.
oxidoreductase 01-aug-05 2c0d
Title: structure of the mitochondrial 2-cys peroxiredoxin from plasmodium falciparum
Author: i. w. boucher, j. a. brannigan, a. j. wilkinson, a. m. brzozowski, s. muller
Keywords: 2-cys, peroxidase, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center
- 2c23.pdb.
signaling protein 24-aug-05 2c23
Title: 14-3-3 protein beta (human) in complex with exoenzyme s peptide
Author: j. m. elkins, g. a. schoch, x. yang, m. sundstrom, c. arrowsmith, a. edwards, d. a. doyle
Keywords: ywhab, exos, exoenzyme s, structural genomics, structural genomics consortium, acetylation, alternative initiation, phosphorylation, cell regulator protein, signaling protein
- 2c4o.pdb.
ligase 21-oct-05 2c4o
Title: crystal structure of human ubiquitin-conjugating enzyme ubch5b
Author: r. b. dodd, r. j. read
Keywords: ubiquitin-conjugating enzyme, ligase, ubl conjugation pathway
- 2c4p.pdb.
ligase 21-oct-05 2c4p
Title: crystal structure of human ubiquitin-conjugating enzyme ubch5a
Author: r. b. dodd, r. j. read
Keywords: ubiquitin-conjugating enzyme, ligase, ubl conjugation pathway
- 2c63.pdb.
signaling protein/peptide complex 07-nov-05 2c63
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: phosphoserine, structural genomics, structural genomics consortium, acetylation, phosphorylation, signaling protein/peptide complex, ywhah
- 2c6u.pdb.
lectin 11-nov-05 2c6u
Title: crystal structure of human clec-2 (clec1b)
Author: a. a. watson, j. brown, c. a. o'callaghan
Keywords: rhodocytin, aggretin, c-type lectin-like, platelets, thrombosis, clec1b
- 2c74.pdb.
signaling protein/peptide complex 17-nov-05 2c74
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: phosphoserine, phosphorylation, acetylation, signaling protein/peptide complex
- 2cfe.pdb.
immune system 20-feb-06 2cfe
Title: the 1.5 a crystal structure of the malassezia sympodialis mala s 6 allergen, a member of the cyclophilin pan- allergen family
Author: a. limacher, a. g. glaser, s. fluckiger, a. scheynius, l. scapozza, r. crameri
Keywords: malassezia sympodialis, allergen, ige, autoreactivity, immune system, epitope, fungi
- 2ch5.pdb.
transferase 13-mar-06 2ch5
Title: crystal structure of human n-acetylglucosamine kinase in complex with n-acetylglucosamine
Author: w. a. weihofen, m. berger, h. chen, w. saenger, s. hinderlich
Keywords: glcnac, sugar kinase, ribonuclease h fold, sugar kinase/hsp70/actin superfamily, domain rotation, open conformation, closed conformation, transferase, hypothetical protein
- 2ch6.pdb.
transferase 13-mar-06 2ch6
Title: crystal structure of human n-acetylglucosamine kinase in complex with adp and glucose
Author: w. a. weihofen, m. berger, h. chen, w. saenger, s. hinderlich
Keywords: glcnac, sugar kinase, ribonuclease h fold, sugar kinase/hsp70/actin superfamily, domain rotation, open conformation, closed conformation, transferase, hypothetical protein
- 2cik.pdb.
antigen/peptide complex 22-mar-06 2cik
Title: insights into crossreactivity in human allorecognition: the structure of hla-b35011 presenting an epitope derived from cytochrome p450.
Author: c. s. hourigan, m. harkiolaki, n. a. peterson, j. i. bell, e. y. jones, c. a. o'callaghan
Keywords: pyrrolidone carboxylic acid
- 2d58.pdb.
metal binding protein 31-oct-05 2d58
Ni
Title: human microglia-specific protein iba1
Author: s. kamitori
- 2d5b.pdb.
isomerase 31-oct-05 2d5b
Zn
Title: crystal structure of thermus thermophilus methionyl trna synthetase y225f mutant obtained in the presence of peg6000
Author: m. konno, r. takeda, r. takasaka, y. mori, r. ishii, s. yokoyama
Keywords: class 1a aars
- 2d7q.pdb.
structural protein 24-nov-05 2d7q
(NMR, 20 structures)
Title: solution structure of the 23th filamin domain from human filamin c
Author: t. tomizawa, t. kigawa, s. koshiba, m. inoue, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dm6.pdb.
oxidoreductase 20-apr-06 2dm6
Cl
Title: crystal structure of anti-configuration of indomethacin and leukotriene b4 12-hydroxydehydrogenase/15-oxo- prostaglandin 13-reductase complex
Author: t. hori, j. ishijima, t. yokomizo, h. ago, t. shimizu, m. miyano
- 2doo.pdb.
hydrolase 01-may-06 2doo
Zn
Title: the structure of imp-1 complexed with the detecting reagent (dansylc4sh) by a fluorescent probe
Author: h. kurosaki, y. yamaguchi, h. yasuzawa, w. jin, y. yamagata, y. arakawa
Keywords: protein-inhibitor complex
- 2dy7.pdb.
hydrolase 07-sep-06 2dy7
(NMR, 20 structures)
Title: solution structure of the first chromodomain of yeast chd1
Author: m. okuda, y. nishimura
- 2dy8.pdb.
hydrolase 07-sep-06 2dy8
(NMR, 20 structures)
Title: solution structure of the second chromodomain of yeast chd1
Author: m. okuda, y. nishimura
- 2e0i.pdb.
lyase 10-oct-06 2e0i
Title: crystal structure of archaeal photolyase from sulfolobus tokodaii with two fad molecules: implication of a novel light-harvesting cofactor
Author: m. fujihashi, n. numoto, y. kobayashi, a. mizushima, m. tsujimura, a. nakamura, y. kawarabayashi, k. miki
Keywords: crystal structure, fad, dna repair, sulfolobus tokodaii
- 2e0w.pdb.
transferase 16-oct-06 2e0w
Title: t391a precursor mutant protein of gamma- glutamyltranspeptidase from escherichia coli
Author: t. okada, k. wada, k. fukuyama
Keywords: precursor, gamma-gtp, post-translational processing, maturation
- 2e0x.pdb.
transferase 16-oct-06 2e0x
Ca Se
Title: crystal structure of gamma-glutamyltranspeptidase from escherichia coli (monoclinic form)
Author: t. okada, k. wada, k. fukuyama
Keywords: ggt, gamma-gtp
- 2e0y.pdb.
transferase 16-oct-06 2e0y
Sm Se
Title: crystal structure of the samarium derivative of mature gamma-glutamyltranspeptidase from escherichia coli
Author: t. okada, k. wada, k. fukuyama
Keywords: ggt, gamma-gt, glutathione
- 2e1n.pdb.
circadian clock protein 26-oct-06 2e1n
Title: crystal structure of the cyanobacterium circadian clock modifier pex
Author: k. arita, t. shimizu
Keywords: dna binding protein
- 2ewi.pdb.
electron transport 03-nov-05 2ewi
Fe
Title: the f20y mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Author: y. higuchi, h. komori, k. morita
- 2ewk.pdb.
electron transport 03-nov-05 2ewk
Fe
Title: the t24v mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Author: y. higuchi, h. komori, k. morita
- 2ewu.pdb.
electron transport 07-nov-05 2ewu
Fe
Title: the f20h mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Author: y. higuchi, h. komori, k. morita
- 2exe.pdb.
transferase 08-nov-05 2exe
Title: crystal structure of the phosphorylated clk3
Author: e. papagrigoriou, p. rellos, s. das, a. bullock, l. j. ball, a. turnbull, p. savitsky, o. fedorov, c. johansson, e. ugochukwu, f. sobott, f. von delft, a. edwards, m. sundstrom, j. weigel, c. arrowsmith, s. knapp, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2f2e.pdb.
dna binding protein/structural genomics 16-nov-05 2f2e
Se
Title: crystal structure of pa1607, a putative transcription factor
Author: e. a. sieminska, x. xu, h. zheng, v. lunin, m. cuff, a. joachimiak, a. edwards, a. savchenko, d. a. r. sanders, midwest center for structural genomics (mcsg)
Keywords: helix-trun-helix, apc5613, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2f48.pdb.
transferase 22-nov-05 2f48
F Al
Title: crystal structure of a novel fructose 1,6-bisphosphate and alf3 containing pyrophosphate-dependent phosphofructo-1- kinase complex from borrelia burgdorferi
Author: m. wang
- 2f59.pdb.
transferase 25-nov-05 2f59
Ca
Title: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785, swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-ribitylamino)-2,4(1h,3h) pyrimidinedione
Author: s. klinke, v. zylberman, b. g. guimaraes, b. c. braden, f. a. goldbaum
Keywords: inhibitor complex
- 2fc3.pdb.
ribosome, rna binding protein 11-dec-05 2fc3
Title: crystal structure of the extremely thermostable aeropyrum pernix l7ae multifunctional protein
Author: b. a. brown ii, j. suryadi, z. zhou, t. b. gupton jr. , s. l. flowers
- 2fdu.pdb.
oxidoreductase 14-dec-05 2fdu
Fe
Title: microsomal p450 2a6 with the inhibitor n,n-dimethyl(5- (pyridin-3-yl)furan-2-yl)methanamine bound
Author: j. k. yano, c. d. stout, e. f. johnson
Keywords: p450 2a6, p450, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase
- 2fdv.pdb.
oxidoreductase 14-dec-05 2fdv
Fe
Title: microsomal p450 2a6 with the inhibitor n-methyl(5-(pyridin- 3-yl)furan-2-yl)methanamine bound
Author: j. k. yano, c. d. stout, e. f. johnson
Keywords: p450 2a6, p450, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase
- 2fdw.pdb.
oxidoreductase 14-dec-05 2fdw
Fe
Title: crystal structure of human microsomal p450 2a6 with the inhibitor (5-(pyridin-3-yl)furan-2-yl)methanamine bound
Author: j. k. yano, c. d. stout, e. f. johnson
Keywords: p450 2a6, p450, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase
- 2fdy.pdb.
oxidoreductase 14-dec-05 2fdy
Fe
Title: microsomal p450 2a6 with the inhibitor adrithiol bound
Author: j. k. yano, c. d. stout, e. f. johnson
Keywords: p450 2a6, p450, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase
- 2fdz.pdb.
hydrolase 14-dec-05 2fdz
Title: crystal structure of a potent small molecule inhibitor bound to cathepsin k
Author: m. mcgrath
Keywords: structure-guided drug design, proteae
- 2fnk.pdb.
lyase 11-jan-06 2fnk
Zn
Title: activation of human carbonic anhydrase ii by exogenous proton donors
Author: d. bhatt, s. z. fisher, c. tu, r. mckenna, d. n. silverman
Keywords: proton transfer, exogenous proton donor
- 2fnm.pdb.
lyase 11-jan-06 2fnm
Zn
Title: activation of human carbonic anhdyrase ii by exogenous proton donors
Author: d. bhatt, s. z. fisher, c. tu, r. mckenna, d. n. silverman
Keywords: proton transfer, exogenous proton donor
- 2fnn.pdb.
lyase 11-jan-06 2fnn
Zn
Title: activation of human carbonic anhydrase ii by exogenous proton donors
Author: d. bhatt, s. z. fisher, c. tu, r. mckenna, d. n. silverman
Keywords: proton transfer, exogenous proton donor
- 2fno.pdb.
structural genomics, unknown function 11-jan-06 2fno
Se
Title: crystal structure of putative glutathione s-transferase (15162326) from agrobacterium tumefaciens at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative glutathione s-transferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2fyi.pdb.
transcription 08-feb-06 2fyi
Title: crystal structure of the cofactor-binding domain of the cbl transcriptional regulator
Author: e. stec, p. neumann, a. j. wilkinson, a. m. brzozowski, g. d. bujacz
Keywords: lys-r family, cofactor-binding domain, cysteine biosynthesis
- 2gc4.pdb.
oxidoreductase, electron transport 13-mar-06 2gc4
Cu Na Fe
Title: structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 a resolution.
Author: z. chen, r. durley, v. l. davidson, f. s. mathews
Keywords: methylamine dehydrogenase, cytochrome, blue copper protein
- 2gdu.pdb.
transferase 17-mar-06 2gdu
Title: e232q mutant of sucrose phosphorylase from bifidobacterium adolescentis in complex with sucrose
Author: l. k. skov, o. mirza, m. gajhede, j. s. kastrup
Keywords: dimer, glycoside hydrolase
- 2giz.pdb.
toxin 30-mar-06 2giz
Title: structural and functional analysis of natrin, a member of crisp-3 family blocks a variety of ion channels
Author: t. jiang, f. wang, h. li, c. yin, y. zhou, y. shu, z. qi, z. lin
Keywords: blocker, crystal structure, electrophysiology, docking
- 2gmg.pdb.
dna binding protein 06-apr-06 2gmg
(NMR, 10 structures)
Title: northeast structural genomics target pfg3
Author: x. wang, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2gu9.pdb.
immune system 28-apr-06 2gu9
Title: crystal structure of xc5357 from xanthomonas campestris: a putative tetracenomycin polyketide synthesis protein adopting a novel cupin subfamily structure
Author: k. -h. chin, c. c. chou, a. h. -j. wang, s. -h. chou
Keywords: x-ray diffraction, cupin, tetracenomycin polyketide
- 2h19.pdb.
oxidoreductase 16-may-06 2h19
Title: crystal structure of resa cys77ala variant
Author: a. lewin, a. crow, a. oubrie, n. e. le brun
Keywords: thioredoxin, mutant, variant, c77a
- 2h1a.pdb.
oxidoreductase 16-may-06 2h1a
Title: resa c74a variant
Author: a. lewin, a. crow, a. oubrie, n. e. le brun
Keywords: c74a, mutant, variant, thioredoxin
- 2h1b.pdb.
oxidoreductase 16-may-06 2h1b
Title: resa e80q
Author: a. lewin, a. crow, a. oubrie, n. e. le brun
Keywords: resa e80q, e80q, thioredoxin
- 2h1d.pdb.
oxidoreductase 16-may-06 2h1d
Title: resa ph 9.25
Author: a. lewin, a. crow, a. oubrie, n. e. le brun
Keywords: high ph, 9.25, ph 9.25, resa hiph
- 2h1g.pdb.
oxidoreductase 16-may-06 2h1g
Title: resa c74a/c77a
Author: a. lewin, a. crow, a. oubrie, n. e. le brun
Keywords: double mutant, c77a, c74a, resa c74a/c77a, thioredoxin
- 2h2g.pdb.
hydrolase 18-may-06 2h2g
Zn
Title: the structural basis of sirtuin substrate affinity
Author: m. s. cosgrove
Keywords: sir2, sir2tm, sirtuin, sirt1, histone h3
- 2h5m.pdb.
transferase 26-may-06 2h5m
(NMR, 20 structures)
Title: nmr solution structure of a gcn5-like putative n- acetyltransferase from staphylococcus aureus complexed with acetyl-coa. northeast structural genomics consortium target zr31
Author: j. r. cort, t. a. ramelot, t. b. acton, r. b. xiao, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: n-acetyltransferase domain, structural genomics, psi- 2, protein structure initiative, northeast structural genomics consortium, nesg
- 2hdw.pdb.
hydrolase 21-jun-06 2hdw
Title: crystal structure of hypothetical protein pa2218 from pseudomonas aeruginosa
Author: a. a. fedorov, e. v. fedorov, u. ramagopal, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: alpha/beta hydrolase fold, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2hgi.pdb.
ribosome 27-jun-06 2hgi
Title: crystal structure of the 70s thermus thermophilus ribosome showing how the 16s 3'-end mimicks mrna e and p codons. this entry 2hgi contains 30s ribosomal subunit. the 50s ribosomal subunit can be found in pdb entry 2hgj.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: no-template, codon-mimicry
- 2hgj.pdb.
ribosome 27-jun-06 2hgj
Title: crystal structure of the 70s thermus thermophilus ribosome showing how the 16s 3'-end mimicks mrna e and p codons. this entry 2hgj contains 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb entry 2hgi.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: no-template, codon-mimicry
- 2hgp.pdb.
ribosome 27-jun-06 2hgp
Title: crystal structure of the 70s thermus thermophilus ribosome with translocated and rotated shine-dalgarno duplex. this entry 2hgp contains 30s ribosomal subunit. the 50s ribosomal subunit can be found in pdb entry 2hgq.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: shine-dalgarno, post-initiation
- 2hgq.pdb.
ribosome 27-jun-06 2hgq
Title: crystal structure of the 70s thermus thermophilus ribosome with translocated and rotated shine-dalgarno duplex. this entry 2hgq contains 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb entry 2hgp.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: shine-dalgarno, post-initiation
- 2hgr.pdb.
ribosome 27-jun-06 2hgr
Title: 70s t.th. ribosome functional complex with mrna and e- and p-site trnas at 4.5a. this entry 2hgr contains 30s ribosomal subunit. the 50s ribosomal subunit can be found in pdb entry 2hgu.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: initiation
- 2hgu.pdb.
ribosome 27-jun-06 2hgu
Title: 70s t.th. ribosome functional complex with mrna and e- and p-site trnas at 4.5a. this entry 2hgu contains 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb entry 2hgr.
Author: l. jenner, g. yusupova, b. rees, d. moras, m. yusupov
Keywords: initiation
- 2hjd.pdb.
30-jun-06 2hjd
Title: crystal structure of a second quorum sensing antiactivator tram2 from a. tumefaciens strain a6
Author: l. chen
- 2hld.pdb.
hydrolase 06-jul-06 2hld
Mg
Title: crystal structure of yeast mitochondrial f1-atpase
Author: v. kabaleeswaran, n. puri, j. e. walker, a. g. leslie, d. m. mueller
Keywords: atp synthase, f1fo, f1- atpase
- 2hlq.pdb.
transferase 09-jul-06 2hlq
Title: crystal structure of the extracellular domain of the type ii bmp receptor
Author: p. d. mace, j. f. cutfield, s. m. cutfield
Keywords: serine kinase, three-finger toxin, ligand binding domain
- 2hlr.pdb.
transferase 10-jul-06 2hlr
Title: crystal structure of the extracellular domain of the type ii bmp receptor
Author: p. d. mace, j. f. cutfield, s. m. cutfield
Keywords: bmp receptor, tgf-beta
- 2hm2.pdb.
apoptosis 11-jul-06 2hm2
(NMR, 20 structures)
Title: solution structure of asc2
Author: a. natarajan, r. ghose, j. m. hill
Keywords: six helix bundle
- 2hn7.pdb.
immune system 12-jul-06 2hn7
Title: hla-a*1101 in complex with hbv peptide homologue
Author: t. blicher
Keywords: major histocompatibility complex class i, mhc-i, human leukocyte antigen, hla, immunoglobulin family, hepatitis b virus, hbv
- 2hnx.pdb.
lipid binding protein 13-jul-06 2hnx
Title: crystal structure of ap2
Author: e. marr, m. tardie, m. carty, t. brown phillips, x. qiu, g. karam
- 2hoc.pdb.
lyase 14-jul-06 2hoc
Hg Cl F Zn
Title: crystal structure of the human carbonic anhydrase ii in complex with the 5-(4-amino-3-chloro-5- fluorophenylsulfonamido)-1,3,4-thiadiazole-2-sulfonamide inhibitor
Author: v. menchise, a. di fiore, g. de simone
- 2hro.pdb.
transferase 20-jul-06 2hro
Title: structure of the full-lenght enzyme i of the pts system from staphylococcus carnosus
Author: j. a. marquez, s. reinelt, b. koch, r. engelman, w. hengstenberg, k. scheffzek
Keywords: protein phosphorylation, sugar transport, histidine phosphorylation
- 2ht0.pdb.
transcription/dna 24-jul-06 2ht0
Cd
Title: ihf bound to doubly nicked dna
Author: k. k. swinger, p. a. rice
Keywords: kink, nick, protein-dna complex
- 2htg.pdb.
membrane protein 25-jul-06 2htg
(NMR, 66 structures)
Title: structural and functional characterization of tm vii of the nhe1 isoform of the na+/h+ exchanger
Author: j. k. rainey, j. ding, c. xu, l. fliegel, b. d. sykes
Keywords: transmembrane segment, helix-kink-helix
- 2i0v.pdb.
transferase 11-aug-06 2i0v
Cl
Title: c-fms tyrosine kinase in complex with a quinolone inhibitor
Author: c. schubert, c. schalk-hihi
Keywords: kinase-inhibitor complex
- 2i0y.pdb.
transferase 11-aug-06 2i0y
Title: cfms tyrosine kinase (fgf kid) in complex with an arylamide inhibitor
Author: c. schubert, c. schalk-hihi
Keywords: kinase inhibitor complex
- 2i18.pdb.
metal binding protein 13-aug-06 2i18
La
(NMR, 16 structures)
Title: the refined structure of c-terminal domain of an ef-hand calcium binding protein from entamoeba histolytica
Author: s. m. mustafi, s. mukherjee, k. v. r chary
Keywords: alpha helix, calcium binding loops
- 2i1d.pdb.
antimicrobial protein 14-aug-06 2i1d
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp1
Author: d. j. schibli, l. t. nguyen
- 2i1e.pdb.
antimicrobial protein 14-aug-06 2i1e
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp2
Author: d. j. schibli, l. t. nguyen
- 2i1f.pdb.
antimicrobial protein 14-aug-06 2i1f
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp3
Author: d. j. schibli, l. t. nguyen
- 2i1g.pdb.
antimicrobial protein 14-aug-06 2i1g
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp5
Author: d. j. schibli, l. t. nguyen
- 2i1h.pdb.
antimicrobial protein 14-aug-06 2i1h
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp7
Author: d. j. schibli, l. t. nguyen
- 2i1i.pdb.
antimicrobial protein 14-aug-06 2i1i
(NMR, 20 structures)
Title: dpc micelle-bound nmr structures of tritrp8
Author: d. j. schibli, l. t. nguyen
- 2i1m.pdb.
transferase 14-aug-06 2i1m
Title: cfms tyrosine kinase (tie2 kid) in complex with an arylamide inhibitor
Author: c. schubert, c. schalk-hihi
Keywords: kinase inhibitor complex
- 2i46.pdb.
protein binding 21-aug-06 2i46
Title: crystal structure of human tpp1
Author: f. wang, e. r. podell, a. j. zaug, y. t. yang, p. baciu, t. else, g. d. hammer, t. r. cech, m. lei
Keywords: ob fold, pot1 binding
- 2i5k.pdb.
transferase 25-aug-06 2i5k
Title: crystal structure of ugp1p
Author: a. roeben, j. m. plitzko, r. koerner, u. m. k. boettcher, k. siegers, m. hayer-hartl, a. bracher
Keywords: sgc domain
- 2i5n.pdb.
photosynthesis 25-aug-06 2i5n
Mg Fe
Title: 1.96 a x-ray structure of photosynthetic reaction center from rhodopseudomonas viridis:crystals grown by microfluidic technique
Author: l. li, d. mustafi, q. fu, v. tereshko, d. l. chen, j. d. tice, r. f. ismagilov
Keywords: secondary quinone (qb), microfluidic technique, hybrid, microbatch, plug
- 2i74.pdb.
hydrolase 30-aug-06 2i74
Title: crystal structure of mouse peptide n-glycanase c-terminal domain in complex with mannopentaose
Author: x. zhou, g. zhao, l. wang, g. li, w. j. lennarz, h. schindelin
- 2i9a.pdb.
hydrolase 05-sep-06 2i9a
Title: crystal structure of the free aminoterminal fragment of urokinase type plasminogen activator (atf)
Author: j. lubkowski, c. barinka
Keywords: kringle domain
- 2iag.pdb.
isomerase 08-sep-06 2iag
Na Fe
Title: crystal structure of human prostacyclin synthase
Author: c. -w. chiang, h. -c. yeh, l. -h. wang, n. -l. chan
Keywords: class iii cytochorme p450, hemoprotein, cyp8a1
- 2iak.pdb.
cell adhesion 08-sep-06 2iak
Title: crystal structure of a protease resistant fragment of the plakin domain of bullous pemphigoid antigen1 (bpag1)
Author: j. j. jefferson
Keywords: spectrin repeat
- 2ibx.pdb.
virus/viral protein 12-sep-06 2ibx
Title: influenza virus (vn1194) h5 ha
Author: s. yamada, r. j. russell, s. j. gamblin, j. j. skehel, y. kawaoka
Keywords: haemagglutinin, h5n1
- 2iep.pdb.
signaling protein,transferase 19-sep-06 2iep
Title: crystal structure of immunoglobulin-like domains 1 and 2 of the receptor tyrosine kinase musk
Author: a. l. stiegler, s. j. burden, s. r. hubbard
- 2igk.pdb.
oxidoreductase 22-sep-06 2igk
Title: crystal structure of recombinant pyranose 2-oxidase
Author: c. divne
Keywords: gmc oxidoreductase, rossman fold, phbh fold, homotetramer, 8-alpha-(n3) histidyl flavinylation
- 2igm.pdb.
oxidoreductase 22-sep-06 2igm
Title: crystal structure of recombinant pyranose 2-oxidase h548n mutant
Author: c. divne
Keywords: gmc oxidoreductase, active-site mutant, h548n, rossman fold, phbh fold, homotetramer, 8-alpha-(n3) histidyl flavinylation
- 2ign.pdb.
oxidoreductase 22-sep-06 2ign
Title: crystal structure of recombinant pyranose 2-oxidase h167a mutant
Author: c. divne
Keywords: gmc oxidoreductase, h167a mutant, rossman fold, phbh fold, homotetramer, 8-alpha-(n3) histidyl flavinylation
- 2igo.pdb.
oxidoreductase 22-sep-06 2igo
F
Title: crystal structure of pyranose 2-oxidase h167a mutant with 2- fluoro-2-deoxy-d-glucose
Author: c. divne
Keywords: gmc oxidoreductase, h167a mutant, 2-fluoro- 2-deoxy-d-glucose, rossman fold, phbh fold, homotetramer, 8- alpha-(n3) histidyl flavinylation
- 2igx.pdb.
hydrolase 25-sep-06 2igx
Title: achiral, cheap and potent inhibitors of plasmepsins ii
Author: l. prade
- 2igy.pdb.
hydrolase 25-sep-06 2igy
Title: achiral, cheap and potent inhibitors of plasmepsins ii
Author: l. prade
- 2iit.pdb.
hydrolase 28-sep-06 2iit
F Na
Title: human dipeptidyl peptidase 4 in complex with a diazepan-2- one inhibitor
Author: g. scapin, t. biftu, a. e. weber
- 2iiv.pdb.
hydrolase 28-sep-06 2iiv
F
Title: human dipeptidyl peptidase 4 in complex with a diazepan-2- one inhibitor
Author: g. scapin, a. e. weber, t. biftu
- 2ija.pdb.
transferase 29-sep-06 2ija
U Na Se
Title: human n-acetyltransferase 1 f125s mutant
Author: w. tempel, h. wu, l. dombrovski, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, d. m. grant, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: arylamide acetylase 1, structural genomics, structural genomics consortium, sgc
- 2ijg.pdb.
lyase, dna binding protein 29-sep-06 2ijg
Title: crystal structure of cryptochrome 3 from arabidopsis thaliana
Author: y. huang, j. deisenhofer
- 2ijn.pdb.
transcription,transferase 29-sep-06 2ijn
F
Title: isothiazoles as active-site inhibitors of hcv ns5b polymerase
Author: s. yan, n. yao
- 2inc.pdb.
oxidoreductase 06-oct-06 2inc
Fe
Title: native toluene/o-xylene monooxygenase hydroxylase x-ray crystal structure
Author: m. s. mccormick, m. h. sazinsky, k. l. condon, s. j. lippard
Keywords: 4-helix bundle, carboxylate bridge, metalloenzyme
- 2ind.pdb.
oxidoreductase 06-oct-06 2ind
Mn
Title: mn(ii) reconstituted toluene/o-xylene monooxygenase hydroxylase x-ray crystal structure
Author: m. s. mccormick, m. h. sazinsky, k. l. condon, s. j. lippard
Keywords: 4-helix bundle, carboxylate bridge, metalloenzyme
- 2ine.pdb.
oxidoreductase 06-oct-06 2ine
Title: crystal structure of aldose reductase complexed with phenylacetic acid
Author: d. h. t. harrison, a. milne, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2inz.pdb.
oxidoreductase 09-oct-06 2inz
Title: crystal structure of aldose reductase complexed with 2- hydroxyphenylacetic acid
Author: d. h. t. harrison, e. pape, e. carlson, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2ipc.pdb.
transport protein 12-oct-06 2ipc
Title: crystal structure of the translocation atpase seca from thermus thermophilus reveals a parallel, head-to-head dimer
Author: d. g. vassylyev, h. mori, m. n. vassylyeva, t. tsukazaki, y. kimura, t. h. tahirov, k. ito
Keywords: atpase, parallel dimer
- 2ipw.pdb.
oxidoreductase 12-oct-06 2ipw
Cl
Title: crystal structure of c298a w219y aldose reductase complexed with dichlorophenylacetic acid
Author: d. h. t. harrison, e. pape, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2iq0.pdb.
oxidoreductase 12-oct-06 2iq0
Title: crystal structure of aldose reductase complexed with hexanoic acid
Author: d. h. t. harrison, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2iqd.pdb.
oxidoreductase 13-oct-06 2iqd
Title: crystal structure of aldose reductase complexed with lipoic acid
Author: d. h. t. harrison, e. carlson, e. pape, j. m. brownlee
Keywords: ari, aldo-keto reductase, lipoic
- 2is7.pdb.
oxidoreductase 16-oct-06 2is7
Cl
Title: crystal structure of aldose reductase complexed with dichlorophenylacetic acid
Author: d. h. t. harrison, a. milne, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2isb.pdb.
lyase 17-oct-06 2isb
Se
Title: crystal structure of fumarase of fum-1 (np_069927.1) from archaeoglobus fulgidus at 1.66 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: fumarase of fum-1, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
- 2isf.pdb.
oxidoreductase 17-oct-06 2isf
Title: crystal structure of c298a w219y aldose reductase complexed with phenylacetic acid
Author: d. h. t. harrison, e. pape, j. m. brownlee
Keywords: ari, aldo-keto reductase
- 2it9.pdb.
structural genomics/unknown function 19-oct-06 2it9
Cl Se
Title: crystal structure of hypothetical protein (yp_292156.1) from prochlorococcus sp. natl2a at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, psi- 2, protein structure initiative, joint center for structural genomics, jcsg
- 2iy3.pdb.
rna-binding protein complex 12-jul-06 2iy3
(cryo-electron microscopy)
Title: structure of the e. coli signal recognition particle bound to a translating ribosome
Author: c. schaffitzel, m. oswald, i. berger, t. ishikawa, j. p. abrahams, h. k. koerten, r. i. koning, n. ban
Keywords: signal recognition particle
- 2iyq.pdb.
transferase 21-jul-06 2iyq
Cl
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate and adp
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: kinase, magnesium, p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, transferase, atp-binding
- 2iyr.pdb.
transferase 21-jul-06 2iyr
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: kinase, magnesium, p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, transferase, atp-binding
- 2iys.pdb.
transferase 21-jul-06 2iys
Cl
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate, open lid (conf. a)
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyt.pdb.
transferase 22-jul-06 2iyt
Cl
Title: shikimate kinase from mycobacterium tuberculosis in unliganded state, open lid (conf. a)
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyu.pdb.
transferase 22-jul-06 2iyu
Cl
Title: shikimate kinase from mycobacterium tuberculosis in complex with adp, open lid (conf. a)
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyv.pdb.
transferase 22-jul-06 2iyv
Cl
Title: shikimate kinase from mycobacterium tuberculosis in complex with adp, open lid (conf. b)
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyw.pdb.
transferase 22-jul-06 2iyw
Mg
Title: shikimate kinase from mycobacterium tuberculosis in complex with mgatp, open lid (conf. b)
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyx.pdb.
transferase 22-jul-06 2iyx
Cl Mg
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate and so4
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, kinase, magnesium, transferase, atp-binding
- 2iyy.pdb.
transferase 22-jul-06 2iyy
Cl Mg
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate-3-phosphate and so4
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: kinase, magnesium, p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, transferase, atp-binding
- 2iyz.pdb.
transferase 22-jul-06 2iyz
Title: shikimate kinase from mycobacterium tuberculosis in complex with shikimate-3-phosphate and adp
Author: m. d. hartmann, g. p. bourenkov, a. oberschall, n. strizhov, h. d. bartunik
Keywords: kinase, magnesium, p-loop kinase, metal-binding, shikimate kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis, transferase, atp-binding
- 2j23.pdb.
immune protein 16-aug-06 2j23
Title: cross-reactivity and crystal structure of malassezia sympodialis thioredoxin (mala s 13), a member of a new pan- allergen family
Author: a. limacher, a. g. glaser, c. meier, l. scapozza, r. crameri
Keywords: immune protein, autoreactivity, cross-reactivity, ige, fungi, epitope, allergen, thioredoxin
- 2j28.pdb.
protein/rna complex 14-aug-06 2j28
Mg
(cryo-electron microscopy)
Title: model of e. coli srp bound to 70s rncs
Author: m. halic, m. blau, t. becker, t. mielke, m. r. pool, k. wild, i. sinning, r. beckmann
Keywords: protein/rna complex, signal recognition particle
- 2j2f.pdb.
oxidoreductase 16-aug-06 2j2f
Fe
Title: the t199d mutant of stearoyl acyl carrier protein desaturase from ricinus communis (castor bean)
Author: j. e. guy, i. abreu, m. moche, y. lindqvist, e. whittle, j. shanklin
Keywords: four-helix bundle, oxidoreductase, lipid synthesis, transit peptide, fatty acid biosynthesis, nadp, plastid, chloroplast, di-ron enzyme
- 2j37.pdb.
ribosome 17-aug-06 2j37
(cryo-electron microscopy)
Title: model of mammalian srp bound to 80s rncs
Author: m. halic, m. blau, t. becker, t. mielke, m. r. pool, k. wild, i. sinning, r. beckmann
Keywords: srp, translation/rna
- 2j3t.pdb.
protein transport 23-aug-06 2j3t
Title: the crystal structure of the bet3-trs33-bet5-trs23 complex.
Author: y. g. kim, b. h. oh
Keywords: palmitate, transport, lipoprotein, er-golgi transport, alternative splicing, golgi apparatus, protein transport, vesicle transport, endoplasmic reticulum, multisubunit tethering factor
- 2j6s.pdb.
transferase/dna complex 04-oct-06 2j6s
Ca
Title: ternary complex of sulfolobus solfataricus dpo4 dna polymerase, o6-methylguanine modified dna, and datp.
Author: a. irimia, r. l. eoff, f. p. guengerich, m. egli
Keywords: nucleotidyltransferase, sulfolobus solfataricus, transferase/dna complex
- 2j6t.pdb.
transferase/dna complex 04-oct-06 2j6t
Ca
Title: ternary complex of sulfolobus solfataricus dpo4 dna polymerase, o6-methylguanine modified dna, and datp.
Author: a. irimia, r. l. eoff, f. p. guengerich, m. egli
Keywords: nucleotidyltransferase, sulfolobus solfataricus, transferase/dna complex
- 2j6u.pdb.
transferase/dna complex 04-oct-06 2j6u
Ca
Title: ternary complex of sulfolobus solfataricus dpo4 dna polymerase, o6-methylguanine modified dna, and dgtp.
Author: r. l. eoff, a. irimia, f. p. guengerich, m. egli
Keywords: nucleotidyltransferase, transferase/dna complex, sulfolobus solfataricus
- 2j89.pdb.
oxidoreductase 24-oct-06 2j89
Title: functional and structural aspects of poplar cytosolic and plastidial type a methionine sulfoxide reductases
Author: n. rouhier, b. kauffmann, f. tete-favier, p. paladino, p. gans, g. branlant, j. p. jacquot, s. boschi-muller
Keywords: poplar, sulfoxide reductase, oxidoreductase
- 2j9t.pdb.
toxin 15-nov-06 2j9t
B
Title: bipd of burkholderia pseudomallei
Author: s. johnson, p. roversi, t. field, j. e. deane, e. galyov, s. m. lea
Keywords: bipd, ttss, t3ss, type 3 secretion system, toxin
- 2noc.pdb.
structural genomics, unknown function 25-oct-06 2noc
(NMR, 20 structures)
Title: solution structure of putative periplasmic protein: northest structural genomics target str106
Author: q. zhang, g. liu, h. wang, c. nwosu, k. cunningham, l. c. ma, r. xiao, j. liu, m. c. baran, g. v. t. swapna, thomas b. a. , b. rost, g. t. montelione, t. szypersk, northeast structural genomics consortium (nesg)
Keywords: str106, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2np3.pdb.
transcription 26-oct-06 2np3
Se
Title: crystal structure of tetr-family regulator (sco0857) from streptomyces coelicolor a3.
Author: k. d. koclega, x. xu, m. chruszcz, j. gu, m. cymborowski, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2np5.pdb.
transcription 26-oct-06 2np5
Se
Title: crystal structure of a transcriptional regulator (rha1_ro04179) from rhodococcus sp. rha1.
Author: m. chruszcz, e. evdokimova, o. kagan, m. cymborowski, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2npn.pdb.
transferase 27-oct-06 2npn
Mg Se
Title: crystal structure of putative cobalamin synthesis related protein (cobf) from corynebacterium diphtheriae
Author: b. nocek, m. zhou, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: cobf, psi-2, mad, structural genomics, sam, s-adenosylmethionine, mcsg, protein structure initiative, midwest center for structural genomics
- 2npt.pdb.
transferase 30-oct-06 2npt
Title: crystal structure of the complex of human mitogen activated protein kinase kinase 5 phox domain (map2k5-phox) with human mitogen activated protein kinase kinase kinase 2 phox domain (map3k2-phox)
Author: p. filippakopoulos, j. debreczeni, v. papagrigoriou, a. turnbull, a. edwards, c. arrowsmith, m. sundstrom, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2npv.pdb.
surface active protein 30-oct-06 2npv
(NMR, 24 structures)
Title: structure and dynamics of surfactin studied by nmr in micellar media
Author: p. tsan, l. volpon, j. m. lancelin
Keywords: cyclic lipopeptide, surfactin, sds micelles
- 2nq7.pdb.
hydrolase 30-oct-06 2nq7
Co K
Title: crystal structure of type 1 human methionine aminopeptidase in complex with 3-(2,2-dimethylpropionylamino)pyridine-2- carboxylic acid thiazole-2-ylamide
Author: a. addlagatta, b. w. matthews
- 2nqt.pdb.
oxidoreductase 31-oct-06 2nqt
Title: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase (rv1652) from mycobacterium tuberculosis at 1.58 a resolution
Author: l. t. cherney, m. m. cherney, c. r. garen, f. moraidin, m. n. g. james, tb structural genomics consortium (tbsgc)
Keywords: dimer, rossmann fold, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 2nqw.pdb.
structural genomics, unknown function 31-oct-06 2nqw
Se
Title: structure of the transporter associated domain from pg_0272, a cbs domain protein from porphyromonas gingivalis
Author: m. e. cuff, l. volkart, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hemolysins, cbs domains, transporter associated domain, corc_hlyc, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2nrq.pdb.
structural genomics, unknown function 02-nov-06 2nrq
Se
Title: crystal structure of a conserved hypothetical protein from sulfolobus solfataricus
Author: k. n. rao, s. k. burley, s. swaminathan, new york structural genomics research consortium (nysgrc)
Keywords: conserved hypothetical protein, sulfolobus solfataricus, 10077c, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2ns2.pdb.
cell cycle 02-nov-06 2ns2
Title: crystal structure of spindlin1
Author: q. zhao, l. qin, f. jiang, b. wu, w. yue, f. xu, z. rong, h. yuan, x. xie, y. gao, c. bai, m. bartlam
Keywords: repeat domains
- 2nvp.pdb.
structural genomics, unknown function 13-nov-06 2nvp
Se
Title: crystal structure of the hypothetical protein cpf_0428 from clostridium perfringens, northeast structural genomics target cpr63.
Author: f. forouhar, y. chen, j. seetharaman, k. cunningham, l. -c. ma, y. fang, m. c. baran, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2nwj.pdb.
metal binding protein 15-nov-06 2nwj
Zn Fe
Title: structure of the complex of c-terminal lobe of bovine lactoferrin with disaccharide at 1.75 a resolution
Author: n. singh, s. sharma, m. perbandt, p. kaur, c. betzel, t. p. singh
Keywords: sugar, complex
- 2nwq.pdb.
oxidoreductase 16-nov-06 2nwq
Se
Title: short chain dehydrogenase from pseudomonas aeruginosa
Author: t. e. mcgrath, m. s. kimber, b. beattie, d. thambipillai, a. dharamsi, c. virag, k. nethery-brokx, a. m. edwards, e. f. pai, n. y. chirgadze
- 2nwv.pdb.
structural genomics/unknown function 16-nov-06 2nwv
Se
Title: crystal structure of xisi protein-like (yp_323822.1) from anabaena variabilis atcc 29413 at 1.85 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: xisi protein-like, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
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Metalloprotein Structure and Design project home page:
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Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS