Recent PDB releases or updates: week of 3 November 2006
- 1b93.pdb.
lyase 19-feb-99 1b93
Title: methylglyoxal synthase from escherichia coli
Author: d. saadat, d. h. t. harrison
Keywords: methylglyoxal, lyase
- 1egh.pdb.
lyase 15-feb-00 1egh
Title: structure of methylglyoxal synthase complexed with the competitive inhibitor 2-phosphoglycolate
Author: d. saadat, d. h. t. harrison
- 1ik4.pdb.
lyase 02-may-01 1ik4
Title: x-ray structure of methylglyoxal synthase from e. coli complexed with phosphoglycolohydroxamic acid
Author: g. t. marks, t. k. harris, m. a. massiah, a. s. mildvan, d. h. t. harrison
Keywords: methylglyoxal, lyase
- 1o9m.pdb.
antibiotic/rna 17-dec-02 1o9m
Title: the complex of a novel antibiotic with the aminoacyl site of the bacterial ribosome revealed by x-ray crystallography.
Author: r. russell, j. b. murray
Keywords: a-site
- 1s0h.pdb.
oxygen storage/transport 31-dec-03 1s0h
Fe
Title: structure determination of haemoglobin from donkey(equus asinus) at 3.0 angstrom resolution
Author: d. balasundaresan, m. n. ponnuswamy, k. saraboji
Keywords: dimer
- 1tk9.pdb.
isomerase 08-jun-04 1tk9
Se
Title: crystal structure of phosphoheptose isomerase 1
Author: k. r. rajashankar, v. solorzano, r. kniewel, c. d. lima, new york structural genomics research consortium (nysgrc)
Keywords: structural genomics, nysgrc, t1512, lpc1_camje, psi, protein structure initiative, new york structural genomics research consortium
- 1xxx.pdb.
lyase 09-nov-04 1xxx
Cl Mg
Title: crystal structure of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosis
Author: g. kefala, s. panjikar, r. janowski, m. s. weiss, tb structural genomics consortium (tbsgc)
Keywords: dapa, rv2753c, mycobacterium tuberculosis, lysine biosynthesis, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 1yqz.pdb.
oxidoreductase 02-feb-05 1yqz
Cl Mg
Title: structure of coenzyme a-disulfide reductase from staphylococcus aureus refined at 1.54 angstrom resolution
Author: t. c. mallett, j. r. wallen, h. sakai, j. luba, d. parsonage, p. a. karplus, t. tsukihara, a. claiborne
- 1yup.pdb.
transport protein 14-feb-05 1yup
Title: reindeer beta-lactoglobulin
Author: a. goldman, e. oksanen
- 1z66.pdb.
virus/viral protein 21-mar-05 1z66
(NMR, 20 structures)
Title: nmr solution structure of domain iii of e-protein of tick- borne langat flavivirus (no rdc restraints)
Author: m. mukherjee, k. dutta, m. a. white, d. cowburn, r. o. fox
- 1zcc.pdb.
hydrolase 11-apr-05 1zcc
Title: crystal structure of glycerophosphodiester phosphodiesterase from agrobacterium tumefaciens str.c58
Author: n. r. krishnamurthy, d. kumaran, s. swaminathan, new york structural genomics research consortium (nysgrc)
Keywords: t2047, glycerophosphodiester phosphodiesterase, agrobacterium tumefaciens str. c58, structural genomics, psi, protein structure initiative, new york structural genomics research consortium
- 1znu.pdb.
plant protein, antibiotic 12-may-05 1znu
(NMR, 20 structures)
Title: structure of cyclotide kalata b1 in dpc micelles solution
Author: z. o. shenkarev, k. d. nadezhdin, v. a. sobol, a. g. sobol, l. skjeldal, a. s. arseniev
Keywords: cyclic peptide, knottin, cystine knot, antimicrobial peptide
- 2a87.pdb.
oxidoreductase 07-jul-05 2a87
Mg
Title: crystal structure of m. tuberculosis thioredoxin reductase
Author: m. akif, k. suhre, c. verma, s. c. mande, tb structural genomics consortium (tbsgc)
Keywords: trxr, fad, nap, nma, tls, oxidoreductase, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 2ac7.pdb.
transferase 18-jul-05 2ac7
Title: crystal structure of adenosine phosphorylase from bacillus cereus with adenosine bound in the active site
Author: a. rinaldo-matthis, s. allegrini, f. sgarrella
Keywords: adenosine, sulfate ion
- 2ajj.pdb.
membrane protein 02-aug-05 2ajj
(NMR, 31 structures)
Title: nmr structure of the in-plane membrane anchor domain [1-28] of the monotopic non structural protein 5a (ns5a) of bovine viral diarrhea virus (bvdv)
Author: n. sapay, r. montserret, c. chipot, v. brass, d. moradpour, g. deleage, f. penin
Keywords: amphipathic alpha-helix
- 2ajm.pdb.
membrane protein 02-aug-05 2ajm
(NMR, 9 structures)
Title: nmr structure of the in-plane membrane anchor domain [1-28] of the monotopic nonstructural protein 5a (ns5a) from the bovine viral diarrhea virus (bvdv)
Author: n. sapay, r. montserret, c. chipot, v. brass, d. moradpour, g. deleage, f. penin
Keywords: amphipathic alpha-helix
- 2ajn.pdb.
membrane protein 02-aug-05 2ajn
(NMR, minimized average structure)
Title: nmr structure of the in-plane membrane anchor domain [1-28] of the monotopic nonstructural protein 5a (ns5a) from the bovine viral diarrhea virus (bvdv)
Author: n. sapay, r. montserret, c. chipot, v. brass, d. moradpour, g. deleage, f. penin
Keywords: amphipathic alpha-helix
- 2ajo.pdb.
membrane protein 02-aug-05 2ajo
(NMR)
Title: nmr structure of the in-plane membrane anchor domain [1-28] of the monotopic nonstructural protein 5a (ns5a) from the bovine viral diarrhea virus (bvdv)
Author: n. sapay, r. montserret, c. chipot, v. brass, d. moradpour, g. deleage, f. penin
Keywords: amphipathic alpha-helix
- 2akp.pdb.
chaperone 03-aug-05 2akp
Title: hsp90 delta24-n210 mutant
Author: k. richter, s. moser, f. hagn, r. friedrich, o. hainzl, m. heller, s. schlee, h. kessler, j. reinstein, j. buchner
Keywords: xray crystal structure, intrinsic inhibition
- 2amo.pdb.
oxidoreductase 09-aug-05 2amo
Fe
Title: loose dimer of a bacillus subtilis nitric oxide synthase
Author: k. pant, b. r. crane
Keywords: nitric oxide synthase, non-native structure, molten globule
- 2aqm.pdb.
oxidoreductase 18-aug-05 2aqm
Cu Zn
Title: cu/zn superoxide dismutase from brucella abortus
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: brucella abortus
- 2aqn.pdb.
oxidoreductase 18-aug-05 2aqn
Cu Zn
Title: cu/zn superoxide dismutase from neisseria meningitidis
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: neisseria meningitidis.
- 2aqp.pdb.
oxidoreductase 18-aug-05 2aqp
Cu Zn
Title: cu/zn superoxide dismutase from neisseria meningitidis e73a mutant
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: electrostatic guidance, neisseria meningitidis
- 2aqq.pdb.
oxidoreductase 18-aug-05 2aqq
Cu Zn
Title: cu/zn superoxid dismutate from neisseria meningitidis k91e mutant
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: electrostatic guidance, neisseria meningitidis
- 2aqr.pdb.
oxidoreductase 18-aug-05 2aqr
Cu Zn
Title: cu/zn superoxide dismutase from neisseria meningitidis k91q mutant
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: electrostatic guidance, neisseria meningitidis
- 2aqs.pdb.
oxidoreductase 18-aug-05 2aqs
Cu Zn
Title: cu/zn superoxide dismutase from neisseria meningitidis k91e, k94e double mutant
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: electrostatic guidance, neisseria meningitidis
- 2aqt.pdb.
oxidoreductase 18-aug-05 2aqt
Cu Zn
Title: cu/zn superoxide dismutase from neisseria meningitidis k91q, k94q double mutant
Author: m. didonato, c. j. kassmann, c. k. bruns, d. e. cabelli, z. cao, l. b. tabatabai, j. s. kroll, e. d. getzoff
Keywords: electrostatic guidance, neisseria meningitidis
- 2ayd.pdb.
transcription 07-sep-05 2ayd
Zn
Title: crystal structure of the c-terminal wrky domainof atwrky1, an sa-induced and partially npr1-dependent transcription factor
Author: m. r. duan, j. nan, y. li, x. d. su
Keywords: zinc finger
- 2b1j.pdb.
signaling protein 15-sep-05 2b1j
Mg
Title: crystal structure of unphosphorylated chey bound to the n- terminus of flim
Author: c. m. dyer, f. w. dahlquist
Keywords: flim, (beta/alpha)5, phosphorylation
- 2b4x.pdb.
blood clotting 27-sep-05 2b4x
Title: crystal structure of antithrombin-iii
Author: t. e. adams, j. a. huntington, d. j. d. johnson, s. c. bock
- 2b78.pdb.
structural genomics, unknown function 03-oct-05 2b78
Title: a putative sam-dependent methyltransferase from streptococcus mutans
Author: j. nan, k. t. wang, x. d. su
Keywords: methyltransferase, caries
- 2b79.pdb.
structural genomics, unknown function 03-oct-05 2b79
Title: crystal structure of smu.440 from streptococcus mutans
Author: j. nan, x. y. zhang, x. y. liu, x. d. su
Keywords: structure genomics, putative protein
- 2bc0.pdb.
oxidoreductase 18-oct-05 2bc0
Title: structural analysis of streptococcus pyogenes nadh oxidase: wild-type nox
Author: w. h. boles, t. c. mallett
Keywords: nadh oxidase, pyridine nucleotide disulfide oxidoreductase, c(4a)-peroxyflavin, crystallography, conformational dynamics, cysteine oxidation, sulfinic acid
- 2bc1.pdb.
oxidoreductase 18-oct-05 2bc1
Title: structural analysis of streptococcus pyogenes nadh oxidase: c44s nox
Author: w. h. boles, t. c. mallett
Keywords: nadh oxidase, pyridine nucleotide disulfide oxidoreductase, c(4a)-peroxyflavin, crystallography, conformational dynamics, cysteine oxidation, sulfinic acid
- 2bcp.pdb.
oxidoreductase 19-oct-05 2bcp
Title: structural analysis of streptococcus pyogenes nadh oxidase: c44s nox with azide
Author: w. h. boles, t. c. mallett
Keywords: nadh oxidase, pyridine nucleotide disulfide oxidoreductase, c(4a)-peroxyflavin, crystallography, conformational dynamics, cysteine oxidation, sulfinic acid, azide
- 2bcx.pdb.
calcium binding protein 19-oct-05 2bcx
Ca
Title: crystal structure of calmodulin in complex with a ryanodine receptor peptide
Author: a. a. maximciuc, y. shamoo, k. r. mackenzie
Keywords: type-2 turn
- 2be7.pdb.
transferase 23-oct-05 2be7
Zn
Title: crystal structure of the unliganded (t-state) aspartate transcarbamoylase of the psychrophilic bacterium moritella profunda
Author: d. de vos, s. n. savvides, j. van beeumen
Keywords: psychrophilic, cold adaptation, transferase, allosteric, holoenzyme
- 2be9.pdb.
transferase 23-oct-05 2be9
Zn
Title: crystal structure of the ctp-liganded (t-state) aspartate transcarbamoylase from the extremely thermophilic archaeon sulfolobus acidocaldarius
Author: d. de vos, s. n. savvides, j. van beeumen
Keywords: hyperthermophilic, temperature, transferase, allosteric, holoenzyme, ctp complex
- 2bl1.pdb.
transferase 07-feb-05 2bl1
Se
Title: crystal structure of a putative phosphinothricin acetyltransferase (pa4866) from pseudomonas aeruginosa pac1
Author: a. m. davies, r. tata, r. agha, b. j. sutton, p. r. brown
Keywords: n-acetyltransferase, hypothetical protein, phosphinothricin, gcn5 family, pseudomonas aeruginosa, transferase
- 2bq0.pdb.
cell regulator protein 25-apr-05 2bq0
Title: 14-3-3 protein beta (human)
Author: x. yang, j. m. elkins, o. fedorov, e. j. longman, f. sobott, l. j. ball, m. sundstrom, c. arrowsmith, a. edwards, d. a. doyle
Keywords: ywhab, structural genomics, structural genomics consortium, alternative initiation, multigene family, phosphorylation, cell regulator protein
- 2br9.pdb.
cell regulator protein 03-may-05 2br9
Title: 14-3-3 protein epsilon (human) complexed to peptide
Author: x. yang, j. m. elkins, m. soundararajan, o. fedorov, m. sundstrom, a. edwards, c. arrowsmith, d. a. doyle, structural genomics consortium (sgc)
Keywords: phosphoserine,structural genomics consortium,sgc, cell regulator protein, ywhae
- 2bs2.pdb.
oxidoreductase 09-may-05 2bs2
Na Fe
Title: quinol:fumarate reductase from wolinella succinogenes
Author: c. r. d. lancaster
Keywords: respiratory chain, succinate dehydrogenase, transmembrane, tricarboxylic acid cycle
- 2btp.pdb.
complex (signal transduction/peptide) 05-jun-05 2btp
Title: 14-3-3 protein theta (human) complexed to peptide
Author: j. m. elkins, a. c. e. johansson, c. smee, x. yang, m. sundstrom, a. edwards, c. arrowsmith, d. a. doyle, structural genomics consortium
Keywords: phosphoserine, structural genomics consortium, phosphorylation, complex (signal transduction/peptide)
- 2buu.pdb.
oxidoreductase 17-jun-05 2buu
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r457s in complex with 4- nitrocatechol
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure, oxidoreductase
- 2buw.pdb.
oxidoreductase 20-jun-05 2buw
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r457s in complex with 4- hydroxybenzoate
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure, oxidoreductase
- 2bux.pdb.
oxidoreductase 20-jun-05 2bux
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, aromatic hydrocarbons catabolism, iron, oxidoreductase, metal- binding
- 2buy.pdb.
oxidoreductase 20-jun-05 2buy
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h in complex with catechol
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure oxidoreductase
- 2buz.pdb.
oxidoreductase 20-jun-05 2buz
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h in complex with 4- nitrocatechol
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure oxidoreductase
- 2bv0.pdb.
oxidoreductase 20-jun-05 2bv0
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h in complex with protocatechuate.
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure, oxidoreductase
- 2bvr.pdb.
hydrolase 24-jun-05 2bvr
Cl
Title: human thrombin complexed with fragment-based small molecules occupying the s1 pocket
Author: t. neumann, h. -d. junker, o. keil, k. burkert, h. ottleben, j. gamer, r. sekul, h. deppe, a. feurer, d. tomandl, g. metz
Keywords: serine protease, coagulation
- 2bvs.pdb.
hydrolase 04-jul-05 2bvs
Cl
Title: human thrombin complexed with fragment-based small molecules occupying the s1 pocket
Author: t. neumann, h. -d. junker, o. keil, k. burkert, h. ottleben, j. gamer, r. sekul, h. deppe, a. feurer, d. tomandl, g. metz
Keywords: serine protease, coagulation
- 2bvu.pdb.
cytosketal protein 04-jul-05 2bvu
Title: d83r mutant of asaris suum major sperm protein (msp)
Author: m. stewart, r. p. grant, t. m. roberts
Keywords: major sperm protein
- 2bvx.pdb.
hydrolase 04-jul-05 2bvx
Cl
Title: design and discovery of novel, potent thrombin inhibitors with a solubilizing cationic p1-p2-linker
Author: s. bulat, s. bosio, e. grabowski, m. a. papadopoulos, s. cerezo-galvez, c. rosenbaum, v. g. matassa, i. ott, g. metz, j. schamberger, r. sekul, a. feurer
Keywords: serine proteinase, coagulation
- 2bxt.pdb.
hydrolase 04-jul-05 2bxt
Cl
Title: design and discovery of novel, potent thrombin inhibitors with a solubilizing cationic p1-p2-linker
Author: s. bulat, s. bosio, e. grabowski, m. a. papadopoulos, s. cerezo-galvez, c. rosenbaum, v. g. matassa, i. ott, g. metz, j. schamberger, r. sekul, a. feurer
Keywords: serine proteinase
- 2bxu.pdb.
hydrolase 27-jul-05 2bxu
Cl F
Title: design and discovery of novel, potent thrombin inhibitors with a solubilizing cationic p1-p2-linker
Author: s. bulat, s. bosio, e. grabowski, m. a. papadopoulos, s. cerezo-galvez, c. rosenbaum, v. g. matassa, i. ott, g. metz, j. schamberger, r. sekul, a. feurer
- 2c23.pdb.
signaling protein 24-aug-05 2c23
Title: 14-3-3 protein beta (human) in complex with exoenzyme s peptide
Author: j. m. elkins, g. a. schoch, x. yang, m. sundstrom, c. arrowsmith, a. edwards, d. a. doyle
Keywords: ywhab, exos, exoenzyme s, structural genomics, structural genomics consortium, acetylation, alternative initiation, phosphorylation, cell regulator protein, signaling protein
- 2c5h.pdb.
transferase 26-oct-05 2c5h
Cl
Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase from streptomyces cattleya complexed with 2'deoxy-adenosine
Author: a. r. mcewan, h. deng, r. p. mcglinchey, d. r. robinson, d. o'hagan, j. h. naismith, j. spencer
Keywords: 5'-fluorodeoxyadenosine synthase,fla,inhibitor, aza,streptomyces cattleya,sam analogue,transferase
- 2c63.pdb.
signaling protein/peptide complex 07-nov-05 2c63
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: phosphoserine, structural genomics, structural genomics consortium, acetylation, phosphorylation, signaling protein/peptide complex, ywhah
- 2c74.pdb.
signaling protein/peptide complex 17-nov-05 2c74
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: phosphoserine, phosphorylation, acetylation, signaling protein/peptide complex
- 2c9o.pdb.
hydrolase 14-dec-05 2c9o
Title: 3d structure of the human ruvb-like helicase ruvbl1
Author: p. m. matias, s. gorynia, p. donner, m. a. carrondo
Keywords: aaa+-atpase, atp-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, dna recombination, transcription, transcription regulation, activator, helicase, nucleotide-binding
- 2cb8.pdb.
transport 03-jan-06 2cb8
Zn
Title: high resolution crystal structure of liganded human l-acbp
Author: j. p. taskinen, d. m. van aalten, j. knudsen, r. k. wierenga
Keywords: fatty acid, acetylation, alternative splicing, lipid-binding, transport
- 2cik.pdb.
antigen/peptide complex 22-mar-06 2cik
Title: insights into crossreactivity in human allorecognition: the structure of hla-b35011 presenting an epitope derived from cytochrome p450.
Author: c. s. hourigan, m. harkiolaki, n. a. peterson, j. i. bell, e. y. jones, c. a. o'callaghan
Keywords: pyrrolidone carboxylic acid
- 2cjj.pdb.
dna-binding protein 04-apr-06 2cjj
Title: crystal structure of the myb domain of the rad transcription factor from antirrhinum majus
Author: c. e. m. stevenson, n. burton, m. m. costa, u. nath, r. a. dixon, e. s. coen, d. m. lawson
Keywords: dna-binding protein, myb transcription factor, dna-binding, nuclear protein, floral asymmetry
- 2cl2.pdb.
hydrolase 25-apr-06 2cl2
Title: endo-1,3(4)-beta-glucanase from phanerochaete chrysosporium, solved using native sulfur sad, exhibiting intact heptasaccharide glycosylation
Author: j. vasur, r. kawai, k. igarashi, m. sandgren, m. samejima, j. stahlberg
Keywords: gh16, family 16, laminarinase, laminarin, beta-glucanase, basidiomycete, white rot fungus, gh7, beta-1,3/1,6-glucan, lam16a,pichea pastoris, extracellular, beta sandwich, hydrolase
- 2cm2.pdb.
hydrolase 04-may-06 2cm2
Title: structure of protein tyrosine phosphatase 1b (p212121)
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm3.pdb.
hydrolase 04-may-06 2cm3
Ca
Title: structure of protein tyrosine phosphatase 1b (c2)
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm7.pdb.
hydrolase 04-may-06 2cm7
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm8.pdb.
hydrolase 04-may-06 2cm8
Mg
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphatase,acetylation,oxidation, protein phosphatase,endoplasmic reticulum, polymorphism
- 2cma.pdb.
hydrolase 04-may-06 2cma
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cmb.pdb.
hydrolase 04-may-06 2cmb
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cmc.pdb.
hydrolase 04-may-06 2cmc
F
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2czj.pdb.
rna binding protein/rna 13-jul-05 2czj
Title: crystal structure of the trna domain of tmrna from thermus thermophilus hb8
Author: y. bessho, r. shibata, s. sekine, k. murayama, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: tmrna, ssra rna, 10sa rna, trna, trans-translation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d16.pdb.
structural genomics, unknown function 14-aug-05 2d16
Na
Title: crystal structure of ph1918 protein from pyrococcus horikoshii ot3
Author: n. k. lokanath, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d59.pdb.
structural genomics, unknown function 31-oct-05 2d59
Title: hypothetical protein from pyrococcus horikoshii ot3
Author: b. t. hiyama, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: hypothetical protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d5a.pdb.
structural genomics, unknown function 31-oct-05 2d5a
Title: hypothetical protein from pyrococcus horikoshii ot3
Author: b. t. hiyama, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: hypothetical protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d6c.pdb.
oxygen storage/transport 11-nov-05 2d6c
Fe
Title: crystal structure of myoglobin reconstituted with iron porphycene
Author: t. hayashi, d. murata, m. makino, h. sugimoto, t. matsuo, h. sato, y. shiro, y. hisaeda
Keywords: myoglobin, hemoprotein, porphycene
- 2d6y.pdb.
gene regulation 15-nov-05 2d6y
Se
Title: crystal structure of transcriptional factor sco4008 from streptomyces coelicolor a3(2)
Author: t. hayashi, y. tanaka, n. sakai, m. yao, t. tamura, i. tanaka
- 2dfy.pdb.
transcription 06-mar-06 2dfy
Zn
Title: crystal structure of a cyclized protein fusion of lmo4 lim domains 1 and 2 with the lim interacting domain of ldb1
Author: c. m. j. jeffries, s. c. graham, c. a. collyer, j. m. guss, j. m. matthews
Keywords: lim only protein, lim domain, circular protein
- 2dn4.pdb.
transcription 25-apr-06 2dn4
(NMR, 20 structures)
Title: solution structure of rsgi ruh-060, a gtf2i domain in human cdna
Author: y. doi-katayama, h. hirota, t. suetake, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dn5.pdb.
transcription 25-apr-06 2dn5
(NMR, 20 structures)
Title: solution structure of rsgi ruh-057, a gtf2i domain in human cdna
Author: y. doi-katayama, h. hirota, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dn6.pdb.
signaling protein 25-apr-06 2dn6
(NMR, 20 structures)
Title: solution structure of the ph domain of kiaa0640 protein from human
Author: h. li, n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: kiaa0640 protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dn7.pdb.
signaling protein, hydrolase 25-apr-06 2dn7
(NMR, 20 structures)
Title: solution structures of the 6th fn3 domain of human receptor- type tyrosine-protein phosphatase f
Author: m. sato, n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: leukocyte antigen related, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dn8.pdb.
ligase 25-apr-06 2dn8
(NMR, 20 structures)
Title: solution structure of rsgi ruh-053, an apo-biotin carboxy carrier protein from human transcarboxylase
Author: a. z. m. ruhul momen, h. hirota, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: transcarboxylase, acetyl coa carboxylase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dn9.pdb.
apoptosis, chaperone 25-apr-06 2dn9
(NMR, 20 structures)
Title: solution structure of j-domain from the dnaj homolog, human tid1 protein
Author: n. kobayashi, t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: j-domain, tid1, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dna.pdb.
structural genomics, unknown function 25-apr-06 2dna
(NMR, 20 structures)
Title: solution structure of rsgi ruh-056, a uba domain from mouse cdna
Author: a. z. m. ruhul momen, h. hirota, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: dsk2 protein, proteasome, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnc.pdb.
transferase 25-apr-06 2dnc
(NMR, 20 structures)
Title: solution structure of rsgi ruh-054, a lipoyl domain from human 2-oxoacid dehydrogenase
Author: a. z. m. ruhul momen, h. hirota, f. hayashi, c. kurosaki, m. yoshida, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dne.pdb.
transferase 26-apr-06 2dne
(NMR, 20 structures)
Title: solution structure of rsgi ruh-058, a lipoyl domain of human 2-oxoacid dehydrogenase
Author: a. z. m. ruhul momen, h. hirota, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2dnf.pdb.
protein binding 26-apr-06 2dnf
(NMR, 20 structures)
Title: solution structure of rsgi ruh-062, a dcx domain from human
Author: w. ohashi, h. hirota, t. nagashima, f. hayashi, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 2dng.pdb.
translation 26-apr-06 2dng
(NMR, 20 structures)
Title: solution structure of rna binding domain in eukaryotic translation initiation factor 4h
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics , nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnh.pdb.
rna binding protein 26-apr-06 2dnh
(NMR, 20 structures)
Title: solution structure of rna binding domain in bruno-like 5 rna binding protein
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnk.pdb.
rna binding protein 26-apr-06 2dnk
(NMR, 20 structures)
Title: solution structure of rna binding domain in bruno-like 4 rna binding protein
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd,structural genomics , nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnl.pdb.
translation 26-apr-06 2dnl
(NMR, 20 structures)
Title: solution structure of rna binding domain in cytoplasmic polyadenylation element binding protein 3
Author: k. tsuda, t. nagata, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnm.pdb.
rna binding protein 26-apr-06 2dnm
(NMR, 20 structures)
Title: solution structure of rna binding domain in srp46 splicing factor
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnn.pdb.
rna binding protein 26-apr-06 2dnn
(NMR, 20 structures)
Title: solution structure of rna binding domain in rna-binding protein 12
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dno.pdb.
rna binding protein 26-apr-06 2dno
(NMR, 20 structures)
Title: solution structure of rna binding domain in trinucleotide repeat containing 4 variant
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnp.pdb.
transcription 26-apr-06 2dnp
(NMR, 20 structures)
Title: solution structure of rna binding domain 2 in rna-binding protein 14
Author: m. kusuhara, k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnq.pdb.
rna binding protein 26-apr-06 2dnq
(NMR, 20 structures)
Title: solution structure of rna binding domain 1 in rna-binding protein 30
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnr.pdb.
rna binding protein 26-apr-06 2dnr
(NMR, 20 structures)
Title: solution structure of rna binding domain in synaptojanin 1
Author: k. tsuda, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rbd, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnt.pdb.
structural protein 26-apr-06 2dnt
(NMR, 20 structures)
Title: solution structure of rsgi ruh-064, a chromo domain from human cdna
Author: a. z. m. ruhul momen, h. hirota, k. izumi, m. yoshida, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: histone h3 tail, choromatin organization modifier, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnu.pdb.
structural genomics, structural protein 26-apr-06 2dnu
(NMR, 20 structures)
Title: solution structure of rsgi ruh-061, a sh3 domain from human
Author: w. ohashi, h. hirota, t. nagashima, c. kurosaki, f. hayashi, m. yoshida, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative
- 2dnv.pdb.
transcription 26-apr-06 2dnv
(NMR, 20 structures)
Title: solution structure of rsgi ruh-055, a chromo domain from mus musculus cdna
Author: a. z. m. ruhul momen, h. hirota, t. tomizawa, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: histone h3 tail, choromatin organization modifier, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dnw.pdb.
transport protein 26-apr-06 2dnw
(NMR, 20 structures)
Title: solution structure of rsgi ruh-059, an acp domain of acyl carrier protein, mitochondrial [precursor] from human cdna
Author: t. abe, h. hirota, c. kurosaki, m. yoshida, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2dnx.pdb.
transport protein 26-apr-06 2dnx
(NMR, 20 structures)
Title: solution structure of rsgi ruh-063, an n-terminal domain of syntaxin 12 from human cdna
Author: t. abe, h. hirota, y. muto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2do0.pdb.
rna binding protein 27-apr-06 2do0
(NMR, 20 structures)
Title: solution structure of the rna binding domain of heterogeneous nuclear ribonucleoprotein m
Author: s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rrm, rna binding domain, rbd, rnp , structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2do1.pdb.
gene regulation 27-apr-06 2do1
(NMR, 20 structures)
Title: solution structure of the sap domain of human nuclear protein hcc-1
Author: s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2do3.pdb.
transcription 27-apr-06 2do3
(NMR, 20 structures)
Title: solution structure of the third kow motif of transcription elongation factor spt5
Author: w. tanabe, s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2do9.pdb.
signaling protein 28-apr-06 2do9
(NMR, 20 structures)
Title: solution structure of the pyrin/paad-dapin domain in mouse nalp10 (nacht, leucine rich repeat and pyd containing 10)
Author: k. saito, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: apoptosis, inflammation, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2doc.pdb.
cell adhesion 28-apr-06 2doc
(NMR, 20 structures)
Title: solution structure of the fibronectin type-iii domain of human neural cell adhesion molecule 2
Author: m. yoneyama, n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: glycoprotein, fn3 domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dod.pdb.
transcription 28-apr-06 2dod
(NMR, 20 structures)
Title: solution structure of the first ff domain of human transcription factor ca150
Author: s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2doe.pdb.
transcription 28-apr-06 2doe
(NMR, 20 structures)
Title: solution structure of the third ff domain of human transcription factor ca150
Author: s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dof.pdb.
transcription 28-apr-06 2dof
(NMR, 20 structures)
Title: solution structure of the fourth ff domain of human transcription factor ca150
Author: s. suzuki, y. muto, m. inoue, t. kigawa, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dr5.pdb.
transferase/rna 08-jun-06 2dr5
Title: complex structure of cca adding enzyme with mini-helix lacking cca
Author: k. tomita, r. ishitani, s. fukai, o. nureki
- 2dxi.pdb.
ligase/rna 28-aug-06 2dxi
Mg
Title: 2.2 a crystal structure of glutamyl-trna synthetase from thermus thermophilus complexed with trna(glu), atp, and l- glutamol
Author: s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rna, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2erm.pdb.
hormone/growth factor 25-oct-05 2erm
(NMR, 20 structures)
Title: solution structure of a biologically active human fgf-1 monomer, complexed to a hexasaccharide heparin-analogue
Author: a. canales, r. lozano, p. m. nieto, m. martin-lomas, g. gimenez- gallego, j. jimenez-barbero
Keywords: fibroblast growth factor, protein-carbohydrate complex
- 2erw.pdb.
blood clotting, hydrolase inhibitor 25-oct-05 2erw
Title: crystal structure of infestin 4, a factor xiia inhibitor
Author: i. t. n. campos, a. s. tanaka, j. a. r. g. barbosa
- 2es3.pdb.
sugar binding protein 25-oct-05 2es3
Title: crystal structure of thrombospondin-1 n-terminal domain in p1 form at 1.85a resolution
Author: k. tan, j. wang, j. lawler
Keywords: tsp-1, tspn, hbd
- 2ess.pdb.
hydrolase 26-oct-05 2ess
Cl Ca Se
Title: crystal structure of an acyl-acp thioesterase (np_810988.1) from bacteroides thetaiotaomicron vpi-5482 at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: acyl-acp thioesterase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2eu6.pdb.
transcription regulator 28-oct-05 2eu6
Se
Title: e.coli phop receiver domain unactivated
Author: p. bachhawat, a. m. stock
Keywords: response regulator, transcription factor, phop, unactivated, virulence
- 2eub.pdb.
transcription regulator 28-oct-05 2eub
Mg F Pt Be Se
Title: e.coli phop receiver domain activated with bef3-
Author: p. bachhawat, a. m. stock
Keywords: response regulator, beryllium fluoride, transcription factor, phop, activated, virulence
- 2ewg.pdb.
transferase 03-nov-05 2ewg
Mg
Title: t. brucei farnesyl diphosphate synthase complexed with minodronate
Author: r. cao, j. mao, y. gao, h. robinson, s. odeh, a. goddard, e. oldfield
- 2f2v.pdb.
signaling protein 18-nov-05 2f2v
Title: alpha-spectrin sh3 domain a56g mutant
Author: a. camara-artigas, f. conejero-lara, s. casares, o. lopez-mayorga, c. vega
- 2f2w.pdb.
signaling protein 18-nov-05 2f2w
Title: alpha-spectrin sh3 domain r21a mutant
Author: a. camara-artigas, f. conejero-lara, s. casares, o. lopez-mayorga, c. vega
- 2f2x.pdb.
signaling protein 18-nov-05 2f2x
Title: alpha-spectrin sh3 domain r21g mutant
Author: a. camara-artigas, f. conejero-lara, s. casares, o. lopez-mayorga, c. vega
- 2f37.pdb.
membrane protein 18-nov-05 2f37
Se
Title: crystal structure of the ankyrin repeat domain of human trpv2
Author: c. j. mccleverty
- 2f38.pdb.
oxidoreductase 18-nov-05 2f38
Title: crystal structure of prostaglandin f synathase containing bimatoprost
Author: j. komoto, t. yamada, k. watanabe, d. f. woodward, f. takusagawa
Keywords: akr1c3, pgf2alpha fromation, pgh2, bimatoprost, catalytic mechanism
- 2f3j.pdb.
transport protein 21-nov-05 2f3j
(NMR, 14 structures)
Title: the solution structure of the ref2-i mrna export factor (residues 1-155).
Author: a. p. golovanov, g. m. hautbergue, s. a. wilson, l. y. lian
- 2f3x.pdb.
gene regulation 22-nov-05 2f3x
Title: crystal structure of fapr (in complex with effector)- a global regulator of fatty acid biosynthesis in b. subtilis
Author: a. buschiazzo, m. e. guerin, p. m. alzari
- 2f41.pdb.
gene regulation 22-nov-05 2f41
Title: crystal structure of fapr- a global regulator of fatty acid biosynthesis in b. subtilis
Author: a. buschiazzo, m. e. guerin, p. m. alzari
- 2f6g.pdb.
transcription 29-nov-05 2f6g
Cl
Title: benm effector binding domain
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain
- 2f6p.pdb.
gene regulation 29-nov-05 2f6p
Na Se
Title: benm effector binding domain- semet derivative
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain
- 2f78.pdb.
gene regulation 30-nov-05 2f78
Title: benm effector binding domain with its effector benzoate
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain
- 2f7a.pdb.
gene regulation 30-nov-05 2f7a
Title: benm effector binding domain with its effector, cis,cis- muconate
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain, muconate
- 2f7b.pdb.
gene regulation 30-nov-05 2f7b
Cl
Title: catm effector binding domain
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain
- 2f7c.pdb.
gene regulation 30-nov-05 2f7c
Title: catm effector binding domain with its effector cis,cis- muconate
Author: t. clark, s. haddad, o. ezezika, e. neidle, c. momany
Keywords: lysr-type transcriptional regulator, inducer binding domain, effector binding domain, muconate
- 2f8s.pdb.
rna binding protein/rna 03-dec-05 2f8s
Title: crystal structure of aa-ago with externally-bound sirna
Author: y. r. yuan, h. y. chen, d. j. patel
Keywords: sirna, risc loading complex
- 2f8t.pdb.
rna binding protein/rna 03-dec-05 2f8t
Title: crystal structure of aa-ago with externally-bound sirna
Author: y. r. yuan, h. y. chen, d. j. patel
Keywords: sirna, risc loading complex
- 2fel.pdb.
isomerase 16-dec-05 2fel
Cl
Title: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2
Author: l. lehtio, a. goldman
Keywords: sulphonic acids, 3-sulphomuconate, cycloisomerase, agrobacterium radiobacter s2
- 2fen.pdb.
isomerase 16-dec-05 2fen
Cl
Title: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2
Author: l. lehtio, a. goldman
Keywords: sulphonic acids, 3-sulphomuconate, cycloisomerase, agrobacterium radiobacter s2
- 2fj9.pdb.
lipid binding protein 02-jan-06 2fj9
Cl Zn Pb
Title: high resolution crystal structure of the unliganded human acbp
Author: j. p. taskinen, d. m. van aalten, j. knudsen, r. k. wierenga
Keywords: acbp
- 2foz.pdb.
hydrolase 15-jan-06 2foz
Mg
Title: human adp-ribosylhydrolase 3
Author: c. mueller-dieckmann, m. s. weiss, f. koch-nolte
Keywords: metal binding
- 2fp0.pdb.
hydrolase 15-jan-06 2fp0
Mg
Title: human adp-ribosylhydrolase 3
Author: c. mueller-dieckmann, m. s. weiss, f. koch-nolte
Keywords: metal binding, adp-ribose binding
- 2fzs.pdb.
hydrolase 10-feb-06 2fzs
Title: crystal structure of e. coli clpp with a peptide chloromethyl ketone covalently bound at the active site
Author: a. szyk, m. r. maurizi
Keywords: z-leu-tyr chloromethyl ketone inhibitor
- 2g7e.pdb.
hydrolase 28-feb-06 2g7e
Cl
Title: the 1.6 a crystal structure of vibrio cholerae extracellular endonuclease i
Author: b. altermark, a. o. smalaas, n. p. willassen, r. helland
- 2g7f.pdb.
hydrolase 28-feb-06 2g7f
Cl Mg
Title: the 1.6 a crystal structure of vibrio cholerae extracellular endonuclease i
Author: b. altermark, a. o. smalaas, n. p. willassen, r. helland
- 2g94.pdb.
hydrolase 05-mar-06 2g94
Title: crystal structure of beta-secretase bound to a potent and highly selective inhibitor.
Author: l. hong, a. ghosh, j. tang
Keywords: alzheimer's disease, memapsin, bace, asp2, aspartic protease, drug design, protease inhibitor
- 2gc9.pdb.
lyase 13-mar-06 2gc9
Se
Title: crystal structure of p-coumaric acid decarboxylase (np_786857.1) from lactobacillus plantarum at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: p-coumaric acid decarboxylase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2gdr.pdb.
transferase 16-mar-06 2gdr
Title: crystal structure of a bacterial glutathione transferase
Author: e. i. tocheva, p. d. fortin, l. d. eltis, m. e. p. murphy
Keywords: each monomer contains two domains, n- term domain is mixed beta sheets and alpha helices, c-term domain is alpha helical
- 2ghj.pdb.
structural protein 27-mar-06 2ghj
Se
Title: crystal structure of folded and partially unfolded forms of aquifex aeolicus ribosomal protein l20
Author: y. timsit, f. allemand, c. chiaruttini, m. springer
- 2ghr.pdb.
transferase 27-mar-06 2ghr
Se
Title: crystal structure of homoserine o-succinyltransferase (np_981826.1) from bacillus cereus atcc 10987 at 2.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: homoserine o-succinyltransferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2gi4.pdb.
hydrolase 28-mar-06 2gi4
(NMR, 10 structures)
Title: solution structure of the low molecular weight protein tyrosine phosphatase from campylobacter jejuni.
Author: d. tolkatchev, r. shaykhutdinov, p. xu, f. ni
Keywords: protein tyrosine phosphatase, bacterial phosphatase, prokaryotic phosphatase, phosphatase, hydrolase
- 2gj2.pdb.
metal binding protein 30-mar-06 2gj2
Cd
Title: crystal structure of vp9 from white spot syndrome virus
Author: y. liu, j. l. wu, j. x. song, j. sivaraman, c. l. hew
- 2gjg.pdb.
structural genomics, unknown function 30-mar-06 2gjg
Se
Title: crystal structure of hypothetical protein (np_746511.1) from pseudomonas putida kt2440 at 2.25 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2gji.pdb.
metal binding protein 30-mar-06 2gji
(NMR, 10 structures)
Title: nmr solution structure of vp9 from white spot syndrome virus
Author: y. liu, j. l. wu, j. x. song, j. sivaraman, c. l. hew
Keywords: ferredoxin fold, metal binding
- 2gl7.pdb.
transcription 04-apr-06 2gl7
Title: crystal structure of a beta-catenin/bcl9/tcf4 complex
Author: j. sampietro
Keywords: armadillo repeat
- 2gmi.pdb.
ligase, human protein 06-apr-06 2gmi
Title: mms2/ubc13~ubiquitin
Author: c. wolberger, m. j. eddins, c. m. carlile, k. g. gomez, c. m. pickart
Keywords: ubc13, mms2, e2, uev, ubc13 ubiquitin covalent complex,
- 2gov.pdb.
heme binding protein 14-apr-06 2gov
(NMR, 20 structures)
Title: solution structure of murine p22hbp
Author: b. f. volkman, j. s. dias, b. j. goodfellow, f. c. peterson, center for eukaryotic structural genomics (cesg)
Keywords: heme binding, structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2gq0.pdb.
chaperone, hydrolase 19-apr-06 2gq0
Title: crystal structure of the middle domain of htpg, the e. coli hsp90
Author: s. f. harris, a. k. shiau, d. a. agard
Keywords: hsp90, htpg, e. coli
- 2gs0.pdb.
transcription 25-apr-06 2gs0
(NMR, 20 structures)
Title: nmr structure of the complex between the ph domain of the tfb1 subunit from tfiih and the activation domain of p53
Author: p. di lello, t. n. jones, b. d. nguyen, p. legault, j. g. omichinski
Keywords: tfiih, tfb1, activation, transcription, ph domain
- 2gtv.pdb.
isomerase 28-apr-06 2gtv
(NMR, 10 structures)
Title: nmr structure of monomeric chorismate mutase from methanococcus jannaschii
Author: b. r. vogeli
- 2gv1.pdb.
hydrolase 02-may-06 2gv1
(NMR, 20 structures)
Title: nmr solution structure of the acylphosphatase from eschaerichia coli
Author: k. pagano, a. corazza, p. viglino, g. esposito
- 2h1x.pdb.
hydrolase 17-may-06 2h1x
Title: crystal structure of 5-hydroxyisourate hydrolase (formerly known as trp, transthyretin related protein)
Author: g. zanotti, l. cendron, c. folli, i. ramazzina, r. percudani, r. berni
Keywords: trp, uric acid degradation, allantoin
- 2h25.pdb.
sugar binding protein 18-may-06 2h25
(NMR, 10 structures)
Title: solution structure of maltose binding protein complexed with beta-cyclodextrin
Author: y. q. xu, z. lin, y. zheng, d. w. yang
- 2h6o.pdb.
virus/viral protein 31-may-06 2h6o
Title: epstein barr virus major envelope glycoprotein
Author: x. s. chen
- 2h6u.pdb.
hydrolase 01-jun-06 2h6u
Title: crystal structure of 5-hydroxyisourate hydrolase (formerly known as trp, transthyretin related protein)
Author: g. zanotti, l. cendron, c. folli, i. ramazzina, r. percudani, r. berni
Keywords: trp, uric acid degradation, allantoin
- 2h7i.pdb.
oxidoreductase 02-jun-06 2h7i
Title: crystal structure of mycobacterium tuberculosis enoyl reductase (inha) complexed with 1-cyclohexyl-5-oxo-n- phenylpyrrolidine-3-carboxamide
Author: x. he, a. alian, r. stroud, p. r. ortiz de montellano
Keywords: inha, enoyl acyl carrier reductase, pyrrolidine carboxamide
- 2h7l.pdb.
oxidoreductase 02-jun-06 2h7l
Br
Title: crystal structure of mycobacterium tuberculosis enoyl reductase (inha) complexed with n-(3-bromophenyl)-1- cyclohexyl-5-oxopyrrolidine-3-carboxamide
Author: x. he, a. alian, r. stroud, p. r. ortiz de montellano
Keywords: inha, enoyl acyl carrier reductase, pyrrolidine carboxamide
- 2h7m.pdb.
oxidoreductase 02-jun-06 2h7m
Cl
Title: crystal structure of mycobacterium tuberculosis enoyl reductase (inha) complexed with 1-cyclohexyl-n-(3,5- dichlorophenyl)-5-oxopyrrolidine-3-carboxamide
Author: x. he, a. alian, r. stroud, p. r. ortiz de montellano
Keywords: inha, enoyl acyl carrier reductase, pyrrolidine carboxamide
- 2h7n.pdb.
oxidoreductase 02-jun-06 2h7n
Cl
Title: crystal structure of mycobacterium tuberculosis enoyl reductase (inha) complexed with n-(5-chloro-2- methylphenyl)-1-cyclohexyl-5-oxopyrrolidine-3-carboxamide
Author: x. he, a. alian, r. stroud, p. r. ortiz de montellano
Keywords: inha, enoyl acyl carrier reductase, pyrrolidine carboxamide
- 2h7p.pdb.
oxidoreductase 02-jun-06 2h7p
Cl
Title: crystal structure of mycobacterium tuberculosis enoyl reductase (inha) complexed with n-(3-chloro-2- methylphenyl)-1-cyclohexyl- 5-oxopyrrolidine-3-carboxamide
Author: x. he, a. alian, r. stroud, p. r. ortiz de montellano
Keywords: inha, enoyl acyl carrier reductase, pyrrolidine carboxamide
- 2h7q.pdb.
oxidoreductase 02-jun-06 2h7q
Fe
Title: cytochrome p450cam complexed with imidazole
Author: a. verras, a. alian, p. r. montellano
Keywords: imidazole binding, cytochrome p450 inhibition, protein maleability, active site conformation
- 2h7r.pdb.
oxidoreductase 02-jun-06 2h7r
Fe
Title: l244a mutant of cytochrome p450cam complexed with imidazole
Author: a. verras, a. alian, p. r. montellano
Keywords: imidazole binding, cytochrome p450 inhibition, protein maleability, active site conformation
- 2h7s.pdb.
oxidoreductase 02-jun-06 2h7s
Fe
Title: l244a mutant of cytochrome p450cam
Author: a. verras, a. alian, p. r. montellano
Keywords: imidazole binding, cytochrome p450 inhibition, protein maleability, active site conformation
- 2h88.pdb.
oxidoreductase 06-jun-06 2h88
K Fe
Title: avian mitochondrial respiratory complex ii at 1.8 angstrom resolution
Author: l. s. huang, j. t. shen, a. c. wang, e. a. berry
Keywords: membrane protein, heme protein, iron sulfur protein, cytochrome b, oxidoreductase, redox enzyme, respiratory chain, oxaloacetate, ubiquinone
- 2h89.pdb.
oxidoreductase 06-jun-06 2h89
K Fe
Title: avian respiratory complex ii with malonate bound
Author: l. s. huang, j. t. shen, a. c. wang, e. a. berry
Keywords: membrane protein, heme protein, iron sulfur protein, cytochrome b, oxidoreductase, redox enzyme, respiratory chain, malonate, ubiquinone
- 2hac.pdb.
membrane protein 12-jun-06 2hac
(NMR, 15 structures)
Title: structure of zeta-zeta transmembrane dimer
Author: j. j. chou, k. w. wucherpfennig, j. r. schnell, m. e. call
Keywords: alpha helix
- 2hci.pdb.
immune system 16-jun-06 2hci
Title: structure of human mip-3a chemokine
Author: z. a. malik, b. f. tack
Keywords: dimer, space group i4
- 2hcj.pdb.
translation 16-jun-06 2hcj
Mg Na
Title: "trypsin-modified elongation factor tu in complex with tetracycline"
Author: s. mui, s. e. heffron, a. aorora, k. abel, e. bergmann, f. jurnak
Keywords: gtpase center, complex with tetracycline
- 2hct.pdb.
hydrolase 18-jun-06 2hct
Title: acidic residues at the active sites of cd38 and adp-ribosyl cyclase determine naapd synthesis and hydrolysis activities
Author: q. liu, i. a. kriksunov, q. hao, r. graeff, h. c. lee
Keywords: alpha bundle
- 2hdn.pdb.
translation 20-jun-06 2hdn
Mg
Title: trypsin-modified elongation factor tu in complex with tetracycline at 2.8 angstrom resolution
Author: s. mui, s. e. heffron, a. aorora, k. abel, e. bergmann, f. jurnak
Keywords: gtpase center, complex with tetracycline
- 2hf3.pdb.
contractile protein 22-jun-06 2hf3
Ca
Title: crystal structure of monomeric actin in the adp bound state
Author: m. a. rould, q. wan, p. b. joel, s. lowey, k. m. trybus
- 2hf4.pdb.
contractile protein 22-jun-06 2hf4
Ca
Title: crystal structure of monomeric actin in its atp-bound state
Author: m. a. rould, q. wan, p. b. joel, s. lowey, k. m. trybus
- 2hjd.pdb.
30-jun-06 2hjd
Title: crystal structure of a second quorum sensing antiactivator tram2 from a. tumefaciens strain a6
Author: l. chen
- 2hl6.pdb.
hydrolase 06-jul-06 2hl6
Title: structure of homologously expressed ferrulate esterase of aspergillus niger in complex with caps
Author: g. parsiegla, i. herpoel-gimbert, j. dubots
Keywords: a/b hydrolase fold, glycosylated, caps
- 2hns.pdb.
ribonucleic acid 13-jul-06 2hns
(NMR, 20 structures)
Title: structure of the aagu tetraloop
Author: c. gaudin, f. fourmy, s. yoshizawa
Keywords: hairpin
- 2hr0.pdb.
immune system 19-jul-06 2hr0
Title: structure of complement c3b: insights into complement activation and regulation
Author: a. abdul ajees, k. gunasekaran, j. e. volanakis, s. v. narayana, g. j. kotwal, h. m. krishna murthy
- 2ht6.pdb.
signaling protein 25-jul-06 2ht6
Mg
Title: crystal structure of human gem g-domain bound to gdp
Author: y. opatowsky, j. a. hirsch
- 2hu2.pdb.
oxidoreductase 26-jul-06 2hu2
Title: ctbp/bars in ternary complex with nad(h) and rrtgappal peptide
Author: m. nardini, m. bolognesi, k. g. r. quinlan, a. verger, p. francescato, m. crossley
Keywords: zinc finger protein
- 2huw.pdb.
hormone/growth factor 27-jul-06 2huw
Title: x-ray crystal structure of the grb2 sh2 domain complexed to a constrained and cyclopropane-derived ligand
Author: a. p. benfield, s. f. martin
Keywords: contrained, grb2, sh2, preorganization,
- 2huy.pdb.
hormone/growth factor 27-jul-06 2huy
Title: x-ray crystal structure of the complex between the grb2-sh2 domain and a flexible ligand, fpyvn.
Author: a. p. benfield, s. f. martin
Keywords: constrained, entropy, grb2-sh2, ligand preorganization
- 2hx6.pdb.
hydrolase 02-aug-06 2hx6
(NMR, 15 structures)
Title: solution structure analysis of the phage t4 endoribonuclease regb
Author: b. odaert, f. saida, m. uzan, f. bontems
- 2hy6.pdb.
biosynthetic protein 04-aug-06 2hy6
Title: a seven-helix coiled coil
Author: j. liu, q. zheng, y. deng, c. s. cheng, n. r. kallenbach, m. lu
Keywords: protein design, parallel heptamer, protein structure
- 2hyu.pdb.
metal binding protein 07-aug-06 2hyu
Ca
Title: human annexin a2 with heparin tetrasaccharide bound
Author: c. shao, j. f. head, b. a. seaton
Keywords: membrane-binding protein, helix bundle, heparin, tetrasaccharide
- 2hyw.pdb.
metal binding protein 07-aug-06 2hyw
Ca
Title: human annexin a2 with calcium bound
Author: c. shao, j. f. head, b. a. seaton
Keywords: membrane-binding protein, helix bundle
- 2hzd.pdb.
gene regulation 08-aug-06 2hzd
(NMR, 25 structures)
Title: nmr structure of the dna-binding tea domain and insights into tef-1 function
Author: a. anbanandam, s. veeraraghavan
Keywords: helix-turn-helix
- 2hzs.pdb.
transcription 09-aug-06 2hzs
Title: structure of the mediator head submodule med8c/18/20
Author: l. lariviere, s. geiger, s. hoeppner, s. rother, k. straesser, p. cramer
Keywords: channel, helix
- 2i1r.pdb.
transferase 14-aug-06 2i1r
F
Title: novel thiazolones as hcv ns5b polymerase inhibitors: further designs, synthesis, sar and x-ray complex structure
Author: n. yao, s. yan
Keywords: ns5b, viral rna-directed rna polymerase, rdrp, allosteric inhibitor, hcv inhibitor complex
- 2i28.pdb.
toxin 16-aug-06 2i28
(NMR, 20 structures)
Title: solution structure of alpha-conotoxin buia
Author: s. -w. chi, d. -h. kim, b. m. olivera, j. m. mcintosh, k. -h. han
Keywords: beta-turn, two disulfide bonds, c-terminal amidation
- 2i3p.pdb.
hydrolase/dna 20-aug-06 2i3p
Ca
Title: k28r mutant of homing endonuclease i-crei
Author: d. sussman, l. rosen
Keywords: dna
- 2i3q.pdb.
hydrolase/dna 20-aug-06 2i3q
Ca
Title: q44v mutant of homing endonuclease i-crei
Author: l. rosen, d. sussman
Keywords: i-crei
- 2i59.pdb.
signaling protein 24-aug-06 2i59
(NMR, 20 structures)
Title: solution structure of rgs10
Author: o. fedorov, v. higman, a. diehl, m. leidert, a. lemak, p. schmieder, h. oschkinat, j. elkins, m. soundarajan, d. doyle, c. arrowsmith, m. sundstrom, j. weigelt, a. edwards, l. j. ball, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2i89.pdb.
electron transport 01-sep-06 2i89
Mg Fe
Title: structure of septuple mutant of rat outer mitochondrial membrane cytochrome b5
Author: s. terzyan, x. c zhang, d. r. benson, l. wang, n. sun
Keywords: x-ray diffraction, heme
- 2ia0.pdb.
structural genomics, unknown function 06-sep-06 2ia0
Au
Title: transcriptional regulatory protein pf0864 from pyrococcus furiosus a member of the asnc family (pf0864)
Author: h. yang, j. chang, z. j. liu, j. p. rose, b. c. wang, southeast collaboratory for structural genomics, southeast collaboratory for structural genomics (secsg)
Keywords: asnc, pyrococcus furiosus, psi, structural genomics, southeast collaboratory for structural genomics, protein structure initiative, secsg
- 2if4.pdb.
signaling protein 20-sep-06 2if4
Title: crystal structure of a multi-domain immunophilin from arabidopsis thaliana
Author: j. granzin, a. eckhoff, o. h. weiergraeber
Keywords: alpha-beta, tpr-like, alpha
- 2if7.pdb.
immune system 20-sep-06 2if7
Cl Ca
Title: crystal structure of ntb-a
Author: e. cao, u. a. ramagopal, a. a. fedorov, e. v. fedorov, s. g. nathenson, s. c. almo
Keywords: slam6, ly108, homophilic receptor
- 2ihc.pdb.
transcription 26-sep-06 2ihc
Title: crystal structure of the bric-a-brac (btb) domain of human bach1
Author: a. l. amos, a. p. turnbull, g. bunkoczi, e. papagrigoriou, f. gorrec, c. umeano, a. bullock, f. von delft, j. weigelt, a. edwards, c. arrowsmith, m. sundstrom, s. knapp, structural genomics consortium (sgc)
Keywords: bric-a-brac domain,transcription factor, protein- protein interaction, cap'n'collar type of basic region leucine zipper factor family, structural genomics, structural genomics consortium, sgc
- 2ii0.pdb.
signaling protein 27-sep-06 2ii0
Title: crystal structure of catalytic domain of son of sevenless (rem-cdc25) in the absence of ras
Author: t. s. freedman, h. sondermann, g. d. friedland, t. kortemme, d. bar- sagi, s. marqusee, j. kuriyan
- 2iid.pdb.
oxidoreductase 27-sep-06 2iid
Title: structure of l-amino acid oxidase from calloselasma rhodostoma in complex with l-phenylalanine
Author: i. m. moustafa, s. foster, a. y. lyubimov, a. vrielink
Keywords: fad binding domain, reaction mechanism, sustrate binding
- 2ije.pdb.
signaling protein 29-sep-06 2ije
Title: crystal structure of the cdc25 domain of rasgrf1
Author: t. s. freedman, j. kuriyan
Keywords: cdc25 domain, ras guanine nucleotide releasing factor, ras-specific nucleotide exchange factor
- 2ijl.pdb.
transcription 29-sep-06 2ijl
Se
Title: the structure of a putative mode from agrobacterium tumefaciens.
Author: m. e. cuff, e. evdokimiva, m. kudritska, a. edwards, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transcriptional repressor, structural genomics, dna-binding protein, agrobacterium tumefaciens, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2ijr.pdb.
structural genomics, unknown function 30-sep-06 2ijr
Se
Title: crystal structure of a hypothetical protein from yersinia pseudotuberculosis
Author: x. jin, t. min, j. b. bonanno, j. m. sauder, s. wasserman, d. smith, s. k. burley, l. shapiro, new york structural genomics research consortium (nysgrc)
Keywords: psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2ikk.pdb.
structural genomics, unknown function 02-oct-06 2ikk
Se
Title: structural genomics, the crystal structure of the c- terminal domain of yurk from bacillus subtilis subsp. subtilis str. 168
Author: k. tan, c. hatzos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: yurk, bacillus subtilis subsp. subtilis str. 168, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2iks.pdb.
transcription 02-oct-06 2iks
Se
Title: crystal structure of n-terminal truncated dna-binding transcriptional dual regulator from escherichia coli k12
Author: c. chang, e. evdokimova, o. kagan, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: escherichia coli k12, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2il5.pdb.
structural genomics, unknown function 02-oct-06 2il5
Na Se
Title: hypothetical protein sa2116 from staphylococcus aureus.
Author: j. osipiuk, p. quartey, d. holzle, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc23650, hypothetical protein, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2in4.pdb.
oxygen storage/transport 05-oct-06 2in4
Zn
Title: crystal structure of myoglobin with charge neutralized heme, zndmb-dme
Author: k. e. wheeler, j. m. nocek, d. a. cull, l. a. yatsunyk, a. c. rosenzweig, b. m. hoffman
- 2ioj.pdb.
structural genomics, unknown function 10-oct-06 2ioj
Se
Title: the crystal structure of a hypothetical protein (y1212_arcfu) from archeoglobus fulgidus
Author: r. tyagi, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, 10007g, pfam:drtgg, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium
- 2irv.pdb.
membrane protein 16-oct-06 2irv
Title: crystal structure of glpg, a rhomboid intramembrane serine protease
Author: e. bibi, d. fass, a. ben-shem
Keywords: cavity, ser-his dyad
- 2isi.pdb.
lyase 17-oct-06 2isi
Mg
Title: crystal structure of ape1 from homo sapiens in a new crystal form complexed with a ligand
Author: r. agarwal, m. d. naidu
Keywords: crystal structure, magnesium
- 2isn.pdb.
hydrolase 18-oct-06 2isn
Pr Se
Title: crystal structure of a phosphatase from a pathogenic strain toxoplasma gondii
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: phosphatase, pathogenic strain, praseodymium, sulfate, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2ist.pdb.
isomerase 18-oct-06 2ist
Cl
Title: crystal structure of rlud from e. coli
Author: p. g. foster, j. s. finer-moore, r. m. stroud
Keywords: s4 domain, pseudouridine synthase
- 2iul.pdb.
hydrolase 06-jun-06 2iul
Cl Zn
Title: human tace g13 mutant
Author: j. m. watermeyer, b. t. sewell, r. natesh, h. r. corradi, k. r. acharya, e. d. sturrock
Keywords: zinc, mutant, membrane, chloride, protease
- 2iux.pdb.
hydrolase 07-jun-06 2iux
Cl Zn
Title: human tace mutant g1234
Author: j. m. watermeyer, b. t. swell, r. natesh, h. r. corradi, k. r. acharya, e. d. sturrock
Keywords: carboxypeptidase, peptidyl dipeptidase, transmembrane
- 2ivd.pdb.
oxidoreductase 12-jun-06 2ivd
Cl F
Title: structure of protoporphyrinogen oxidase from myxococcus xanthus with acifluorfen
Author: h. r. corradi, a. v. corrigall, e. boix, c. g. mohan, e. d. sturrock, p. n. meissner, k. r. acharya
Keywords: porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, haem biosynthesis, heme biosynthesis, fad, porphyria, acifluorfen, flavoprotein
- 2ive.pdb.
oxidoreductase 13-jun-06 2ive
Title: structure of protoporphyrinogen oxidase from myxococcus xanthus
Author: h. r. corradi, a. v. corrigall, e. boix, c. g. mohan, e. d. sturrock, p. n. meissner, k. r. acharya
Keywords: porphyrin biosynthesis, chlorophyll biosynthesis, fad, porphyria, flavoprotein, oxidoreductase, heme biosynthesis, haem biosynthesis
- 2ix9.pdb.
hydrolase 07-jul-06 2ix9
Title: respective role of protein folding and glycosylation in the thermal stability of recombinant feruloyl esterase a
Author: g. sulzenbacher, i. benoit
Keywords: feruloyl esterase ec 3.1.1.73, hydrolase, glycoprotein, serine esterase
- 2ixc.pdb.
isomerase 07-jul-06 2ixc
Title: rmlc m. tuberculosis with dtdp-rhamnose
Author: c. dong, j. h. naismith
Keywords: epimerise, epimerase, isomerase, epimerize
- 2ixh.pdb.
isomerase 08-jul-06 2ixh
Title: rmlc p aeruginosa with dtdp-rhamnose
Author: c. dong, j. h. naismith
Keywords: epimerise, epimerase, isomerase, epimerize
- 2ixl.pdb.
isomerase 08-jul-06 2ixl
Ni
Title: rmlc s. suis with dtdp-rhamnose
Author: c. dong, j. h. naismith
Keywords: epimerase, isomerase, epimerize
- 2iz3.pdb.
inhibitor 24-jul-06 2iz3
(NMR, 10 structures)
Title: solution structure of human and porcine beta- microseminoprotein
Author: h. ghasriani, k. teilum, y. johnsson, p. fernlund, t. drakenberg
Keywords: alternative splicing, inhibitor
- 2iz4.pdb.
inhibitor 24-jul-06 2iz4
(NMR, 10 structures)
Title: solution structure of human and porcine beta- microseminoprotein
Author: h. ghasriani, k. teilum, y. johnsson, p. fernlund, t. drakenberg
Keywords: inhibitor
- 2j04.pdb.
transcription 31-jul-06 2j04
Title: the tau60-tau91 subcomplex of yeast transcription factor iiic
Author: a. mylona, c. fernandez-tornero, p. legrand, c. w. muller
Keywords: type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast rna polymerase iii, transcription factor iiic
- 2j0p.pdb.
transport protein 04-aug-06 2j0p
Fe
Title: structure of the haem-chaperone proteobacteria-protein hems
Author: s. schneider, k. sharp, p. d. barker, m. paoli
Keywords: haem, iron, transport, ion transport, proteobacteria, iron transport, haem-binding protein
- 2j0r.pdb.
transport protein 04-aug-06 2j0r
Title: structure of the haem-chaperone proteobacteria-protein hems
Author: s. schneider, k. sharp, p. d. barker, m. paoli
Keywords: haem, iron, transport, ion transport, proteobacteria, iron transport, haem-binding protein, transport protein
- 2j0v.pdb.
nucleotide-binding protein 07-aug-06 2j0v
Mg
Title: the crystal structure of arabidopsis thaliana rac7-rop9: the first ras superfamily gtpase from the plant kingdom
Author: c. g. sormo, i. leiros, t. brembu, p. winge, v. os, a. m. bones
Keywords: atrac7, membrane, palmitate, rho gtpase, abscisic acid signaling pathway, dna binding protein nucleotide-binding, arabidopsis thaliana, lipoprotein, gtp-binding, ras superfamily
- 2j2f.pdb.
oxidoreductase 16-aug-06 2j2f
Fe
Title: the t199d mutant of stearoyl acyl carrier protein desaturase from ricinus communis (castor bean)
Author: j. e. guy, i. abreu, m. moche, y. lindqvist, e. whittle, j. shanklin
Keywords: four-helix bundle, oxidoreductase, lipid synthesis, transit peptide, fatty acid biosynthesis, nadp, plastid, chloroplast, di-ron enzyme
- 2j47.pdb.
inhibitor 25-aug-06 2j47
Title: bacteroides thetaiotaomicron gh84 o-glcnacase in complex with a imidazole-pugnac hybrid inhibitor
Author: r. j. dennis, g. j. davies
Keywords: imidazole, gh84, pugnac, enzyme, inhibition, inhibitor
- 2j5a.pdb.
rna-binding 13-sep-06 2j5a
Na
Title: folding of s6 structures with divergent amino-acid composition: pathway flexibility within partly overlapping foldons
Author: s. hansson, l. olofsson, l. hedberg, m. oliveberg, d. t. logan
Keywords: ribosomal protein, ribonucleoprotein, ribosomal protein s6,rna-binding, rrna-binding, protein folding
- 2j5p.pdb.
recombination 19-sep-06 2j5p
(NMR, 20 structures)
Title: e. coli ftsk gamma domain
Author: v. sivanathan, m. d. allen, c. de bekker, r. baker, l. arciszewska, s. m. freund, m. bycroft, j. lowe, d. j. sherratt
Keywords: kops, xercd, recombination, dna segregation, bacterial cell division
- 2j6x.pdb.
oxidoreductase 05-oct-06 2j6x
Zn
Title: the crystal structure of lactate oxidase
Author: i. leiros, e. wang, t. rasmussen, e. oksanen, h. repo, s. b. petersen, p. heikinheimo, e. hough
Keywords: flavoenzyme, fmn-dependent, oxidoreductase
- 2j7z.pdb.
growth factor 18-oct-06 2j7z
Title: crystal structure of recombinant human stromal cell-derived factor-1alpha
Author: e. k. ryu, t. g. kim, t. h. kwon, i. d. jung, d. w. ryu, y. -m. park, k. ahn, c. ban
Keywords: alternative splicing, cxcr4, cytokine, refolding, chemotaxis, sdf-1alpha
- 2j84.pdb.
lyase 19-oct-06 2j84
Cl
Title: crystal structure of human adenylosuccinate lyase in complex with amp
Author: p. stenmark, m. moche, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, u. b. ericsson, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. h. schiavone, m. hogbom, i. johansson, t. karlberg, u. kosinska, t. kotenyova, a. magnusdottir, m. e. nilsson, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, j. uppenberg, m. uppsten, a. g. thorsell, s. van den berg, k. wallden, j. weigelt, p. nordlund
Keywords: adenylosuccinase, succino amp-lyase, purine biosynthesis, alternative splicing, adenylosuccinate lyase, adenylosuccinase deficiency, amp, adsl, lyase, saicar, purine, s- amp, epilepsy
- 2nlb.pdb.
antimicrobial protein 20-oct-06 2nlb
Title: human beta-defensin-1 (mutant asn4ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin
- 2nlc.pdb.
antimicrobial protein 20-oct-06 2nlc
Title: human beta-defensin-1 (mutant ser8ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nld.pdb.
antimicrobial protein 20-oct-06 2nld
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nle.pdb.
antimicrobial protein 20-oct-06 2nle
Title: human beta-defensin-1 (mutant gln11ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlf.pdb.
antimicrobial protein 20-oct-06 2nlf
Title: human beta-defensin-1 (mutant leu13glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlg.pdb.
antimicrobial protein 20-oct-06 2nlg
Title: human beta-defensin-1 (mutant lys22glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlh.pdb.
antimicrobial protein 20-oct-06 2nlh
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlp.pdb.
antimicrobial protein 20-oct-06 2nlp
Title: human beta-defensin-1 (mutant gln24glu)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nlq.pdb.
antimicrobial protein 20-oct-06 2nlq
Title: human beta-defensin-1 (mutant lys31ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nls.pdb.
antimicrobial protein 20-oct-06 2nls
Title: human beta-defensin-1 (mutant gln24ala)
Author: j. lubkowski, m. pazgier
Keywords: chemotactic, defensin, mutant
- 2nml.pdb.
transcription 21-oct-06 2nml
Title: crystal structure of hef2/erh at 1.55 a resolution
Author: t. c. jin, f. guo, i. g. serebriiskii, a. j. howard
Keywords: pseudo beta barrel, interaction network, transcription, cell cycle
- 2nn4.pdb.
structural genomics, unknown function 23-oct-06 2nn4
Title: hypothetical protein
Author: l. damodharan, s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: pfam:duf910, 10278a, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS