Recent PDB releases or updates: week of 6 October 2006
- 1m5a.pdb.
hormone/growth factor 09-jul-02 1m5a
Co
Title: crystal structure of 2-co(2+)-insulin at 1.2a resolution
Author: j. m. nicholson, l. c. perkins, f. c. korber
Keywords: beta sheets, 3(10) helices, disulphide bridges
- 1tqx.pdb.
structural genomics, unknown function 18-jun-04 1tqx
Zn
Title: crystal structure of pfal009167 a putative d-ribulose 5- phosphate 3-epimerase from p.falciparum
Author: j. caruthers, j. bosch, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: protein structure initiative, psi, structural genomics of pathogenic protozoa consortium, sgpp, tim barrel, ribulose phosphate epimerase
- 1vk3.pdb.
ligase 23-apr-04 1vk3
Cl Se
Title: crystal structure of phosphoribosylformylglycinamidine synthase ii (tm1246) from thermotoga maritima at 2.15 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: phosphoribosylformylglycinamidine synthase ii, structural genomics, jcsg, psi, protein structure initiative, joint center for structural genomics
- 1vkb.pdb.
structural genomics, unknown function 07-may-04 1vkb
Title: crystal structure of hypothetical protein from mus musculus at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, jcsg, psi, protein structure initiative, joint center for structural genomics
- 1vl4.pdb.
structural genomics, unknown function 09-jul-04 1vl4
Title: crystal structure of pmba-related protein (tm0727) from thermotoga maritima at 1.95 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: pmba-related protein, structural genomics, jcsg, psi, protein structure initiative, joint center for structural genomics
- 1vlr.pdb.
rna binding protein 10-aug-04 1vlr
Title: crystal structure of mrna decapping enzyme (dcps) from mus musculus at 1.83 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: mrna decapping enzyme (dcps), structural genomics, jcsg, protein structure initiative, psi, joint center for structural genomics
- 1vpb.pdb.
structural genomics, unknown function 15-oct-04 1vpb
Title: crystal structure of putative modulator of dna gyrase (bt3649) from bacteroides thetaiotaomicron vpi-5482 at 1.75 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative modulator of dna gyrase, structural genomics, jcsg, joint center for structural genomics, psi, protein structure initiative
- 1vq0.pdb.
chaperone 30-nov-04 1vq0
Cl Zn
Title: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog) (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: 33 kda chaperonin (heat shock protein 33 homolog) (hsp33), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1vqr.pdb.
structural genomics, unknown function 17-dec-04 1vqr
Se
Title: crystal structure of hypothetical protein (6967725) from campylobacter jejuni at 2.25 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1vr3.pdb.
oxidoreductase 28-jan-05 1vr3
Ni Se
Title: crystal structure of acireductone dioxygenase (13543033) from mus musculus at 2.06 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: acireductone dioxygenase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1vrm.pdb.
structural genomics, unknown function 10-mar-05 1vrm
Se
Title: crystal structure of hypothetical protein (tm1553) from thermotoga maritima at 1.58 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1y3v.pdb.
hydrolase 26-nov-04 1y3v
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y3w.pdb.
hydrolase 26-nov-04 1y3w
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y3x.pdb.
hydrolase 26-nov-04 1y3x
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet, beta hairpin, greek key motive
- 1y3y.pdb.
hydrolase 26-nov-04 1y3y
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1yk0.pdb.
hormone/growth factor receptor 16-jan-05 1yk0
Cl
Title: structure of natriuretic peptide receptor-c complexed with atrial natriuretic peptide
Author: x. he, k. c. garcia
Keywords: crystal structure, natriuretic peptide receptor, allosteric activation
- 1yk1.pdb.
hormone/growth factor receptor 16-jan-05 1yk1
Cl
Title: structure of natriuretic peptide receptor-c complexed with brain natriuretic peptide
Author: x. he, k. c. garcia
Keywords: crystal structure, natriuretic peptide receptor, allosteric activation
- 1yrr.pdb.
hydrolase 04-feb-05 1yrr
Title: crystal structure of the n-acetylglucosamine-6-phosphate deacetylase from escherichia coli k12 at 2.0 a resolution
Author: f. m. ferreira, r. aparicio, g. mendoza-hernandez, m. l. calcagno, g. oliva
Keywords: beta sandwich
- 1z9f.pdb.
dna binding protein 01-apr-05 1z9f
Title: crystal structure of single stranded dna-binding protein (tm0604) from thermotoga maritima at 2.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: single stranded dna-binding protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 1zis.pdb.
transferase 27-apr-05 1zis
Title: recombinant lumazine synthase (hexagonal form)
Author: f. j. lopez-jaramillo
- 1zot.pdb.
lyase 13-may-05 1zot
Mg Ca
Title: crystal structure analysis of the cyaa/c-cam with pmeapp
Author: q. guo, w. j. tang
Keywords: adenylyl cyclase toxin, pmeapp, atp, calmodulin- binding
- 1zx8.pdb.
structural genomics, unknown function 07-jun-05 1zx8
Ni Se
Title: crystal structure of hypothetical protein (tm1367) from thermotoga maritima at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 1zyb.pdb.
transcription regulator 09-jun-05 1zyb
Se
Title: crystal structure of transcription regulator from bacteroides thetaiotaomicron vpi-5482 at 2.15 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2a2m.pdb.
structural genomics, unknown function 22-jun-05 2a2m
Se
Title: crystal structure of (np_812058.1) from bacteroides thetaiotaomicron vpi-5482 at 1.88 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2a2o.pdb.
structural genomics, unknown function 22-jun-05 2a2o
K Se
Title: crystal structure of (np_812058.1) from bacteroides thetaiotaomicron vpi-5482 at 2.16 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2a4l.pdb.
transferase 29-jun-05 2a4l
Title: human cyclin-dependent kinase 2 in complex with roscovitine
Author: w. f. de azevedo jr. , s. h. kim
Keywords: serine/threonine protein kinase, atp-binding, cell cycle, cell division, roscovitine, phosphorylation
- 2ale.pdb.
rna binding protein 05-aug-05 2ale
Mg
Title: crystal structure of yeast rna splicing factor snu13p
Author: h. c. dobbyn, p. a. mcewan, j. bella, r. t. o'keefe
Keywords: rna, yeast, his-tag
- 2apn.pdb.
structural genomics, unknown function 16-aug-05 2apn
(NMR, 20 structures)
Title: hi1723 solution structure
Author: y. he, d. c. yeh, j. orban, structure 2 function project (s2f)
Keywords: structural genomics, structure 2 function project, s2f
- 2aq0.pdb.
dna repair, hydrolase 17-aug-05 2aq0
(NMR, 20 structures)
Title: solution structure of the human homodimeric dna repair protein xpf
Author: d. das, k. tripsianes, g. folkers, n. g. jaspers, j. h. hoeijmakers, r. kaptein, r. boelens
- 2avr.pdb.
cell adhesion 30-aug-05 2avr
Title: crystal structure of bacterial adhesin fada
Author: s. nithianantham, m. xu, n. wu, m. shoham, y. w. han
Keywords: leucine chain
- 2ayb.pdb.
transcription/dna 07-sep-05 2ayb
Title: crystal structure of hpv6a e2 dna binding domain bound to a 16 base pair dna target
Author: e. hooley, r. l. brady, k. gaston
Keywords: double helix, beta barrel
- 2aye.pdb.
transcription 07-sep-05 2aye
Title: crystal structure of the unliganded e2 dna binding domain from hpv6a
Author: e. hooley, r. l. brady, k. gaston
- 2ayg.pdb.
transcription/dna 07-sep-05 2ayg
Title: crystal structure of hpv6a e2 dna binding domain bound to an 18 base pair dna target
Author: e. hooley, r. l. brady, k. gaston
Keywords: double helix, protein-dna complex
- 2b1m.pdb.
sugar binding protein 16-sep-05 2b1m
Title: crystal structure of a papain-fold protein without the catalytic cysteine from seeds of pachyrhizus erosus
Author: m. zhang, z. wei, s. chang
- 2b1n.pdb.
sugar binding protein 16-sep-05 2b1n
Title: crystal structure of a papain-fold protein without the catalytic cysteine from seeds of pachyrhizus erosus
Author: m. zhang, z. wei, s. chang
Keywords: peptide fragment
- 2b2b.pdb.
deoxyribonucleic acid 19-sep-05 2b2b
Na Ca
Title: structural distortions in psoralen cross-linked dna
Author: f. a. hays, h. yonggang, b. f. eichman, w. kong, j. hearst, p. s. ho
Keywords: psoralen, nucleic acid structure
- 2b5z.pdb.
hydrolase 29-sep-05 2b5z
Title: hen lysozyme chemically glycosylated
Author: f. j. lopez-jaramillo, f. perez-balderas, f. hernandez-mateo, f. santoyo-gonzalez
- 2b8n.pdb.
transferase 07-oct-05 2b8n
Se
Title: crystal structure of glycerate kinase (ec 2.7.1.31) (tm1585) from thermotoga maritima at 2.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: glycerate kinase (ec 2.7.1.31), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2ba3.pdb.
dna binding protein 14-oct-05 2ba3
(NMR, 20 structures)
Title: nmr structure of nika n-terminal fragment
Author: h. yoshida, n. furuya, y. j. lin, p. guntert, t. komano, m. kainosho
Keywords: bacterial conjugation, relaxase, dna binding, ribbon- helix-helix
- 2bdg.pdb.
hydrolase 20-oct-05 2bdg
Cl Na Ni
Title: human kallikrein 4 complex with nickel and p- aminobenzamidine
Author: p. goettig
Keywords: s1 subsite, 70-80 loop
- 2bdh.pdb.
hydrolase 20-oct-05 2bdh
Zn
Title: human kallikrein 4 complex with zinc and p-aminobenzamidine
Author: p. goettig
Keywords: s1 subsite, 70-80 loop
- 2bdi.pdb.
hydrolase 20-oct-05 2bdi
Co
Title: human kallikrein 4 complex with cobalt and p- aminobenzamidine
Author: p. goettig
Keywords: s1 subsite, 70-80 loop
- 2bdz.pdb.
hydrolase 21-oct-05 2bdz
Title: mexicain from jacaratia mexicana
Author: j. a. gavira, m. c. oliver-salvador, l. a. gonzalez-ramirez, m. soriano-garcia, j. m. garcia-ruiz
Keywords: cysteine protease, peptidase_c1, papain-like
- 2bsq.pdb.
transcription regulation (complex) 23-may-05 2bsq
I
Title: fitab bound to dna
Author: k. mattison, j. s. wilbur, m. so, r. g. brennan
Keywords: ribbon-helix-helix, dna binding, heterodimer, transcription regulation (complex)
- 2bw1.pdb.
peroxide resistance 05-jul-05 2bw1
Fe Ca
Title: iron-bound crystal structure of dps-like peroxide resistance protein (dpr) from streptococcus suis.
Author: a. kauko, a. pulliainen, s. haataja, j. finne, a. c. papageorgiou
Keywords: peroxide resistance, iron-binding, ferroxidase, dps- family, ferritin-like
- 2bzb.pdb.
transferase 10-aug-05 2bzb
(NMR, 32 structures)
Title: nmr solution structure of a protein aspartic acid phosphate phosphatase from bacillus anthracis
Author: r. grenha, n. rzechorzek, j. a. brannigan, e. ab, g. folkers, r. n. de jong, t. diercks, a. j. wilkinson, r. kaptein, k. s. wilson
Keywords: phosphorylation, sporulation, bacillus, anthracis, antithetical, negative, regulator, spine, transferase
- 2bzx.pdb.
sh3 domain 22-aug-05 2bzx
Title: atomic model of crkl-sh3c monomer
Author: m. harkiolaki, r. j. gilbert, e. y. jones, s. m. feller
Keywords: sh3c,monomer,native,nuclear export, sh3 domain
- 2bzy.pdb.
sh3 domain 22-aug-05 2bzy
Title: homodimer of crkl-sh3c domain
Author: m. harkiolaki, r. j. gilbert, e. y. jones, s. m. feller
Keywords: crkl, sh3 domain, dimer, nuclear export, sh3 domain
- 2c0s.pdb.
transferase 06-sep-05 2c0s
(NMR, 25 structures)
Title: nmr solution structure of a protein aspartic acid phosphate phosphatase from bacillus anthracis
Author: r. grenha, n. rzechorzek, j. a. brannigan, e. ab, g. e. folkers, r. n. de jong, t. diercks, a. j. wilkinson, r. kaptein, k. s. wilson
Keywords: phosphorylation, sporulation, bacillus anthracis, antithetical, negative regulator, spine, transferase
- 2c7t.pdb.
transferase 29-nov-05 2c7t
Title: crystal structure of the plp-bound form of btrr, a dual functional aminotransferase involved in butirosin biosynthesis.
Author: b. popovic, x. tang, d. y. chirgadze, f. huang, t. l. blundell, j. b. spencer
Keywords: smat, butirosin, aminoglycoside antibiotics, transferase
- 2c81.pdb.
transferase 30-nov-05 2c81
Title: crystal structures of the plp- and pmp-bound forms of btrr, a dual functional aminotransferase involved in butirosin biosynthesis.
Author: b. popovic, x. tang, d. y. chirgadze, f. huang, t. l. blundell, j. b. spencer
Keywords: smat, butirosin, aminoglycoside antibiotics, transferase
- 2ceq.pdb.
hydrolase 10-feb-06 2ceq
Title: beta-glycosidase from sulfolobus solfataricus in complex with glucoimidazole
Author: t. m. gloster, m. moracci, a. vasella, g. j. davies
Keywords: family 1, glycoside hydrolase, glucoimidazole, glycosidase, hydrolase
- 2cer.pdb.
hydrolase 10-feb-06 2cer
Title: beta-glycosidase from sulfolobus solfataricus in complex with phenethyl-substituted glucoimidazole
Author: t. m. gloster, s. roberts, m. moracci, a. vasella, g. j. davies
Keywords: inhibitor, transition state mimic, family 1, glucoimidazole, hydrolase
- 2ces.pdb.
hydrolase 10-feb-06 2ces
Ca
Title: beta-glucosidase from thermotoga maritima in complex with glucoimidazole
Author: t. m. gloster, s. roberts, a. vasella, g. j. davies
Keywords: inhibitor, transition state mimic, family 1, glucoimidazole, hydrolase
- 2cet.pdb.
hydrolase 10-feb-06 2cet
Ca
Title: beta-glucosidase from thermotoga maritima in complex with phenethyl-substituted glucoimidazole
Author: t. m. gloster, s. roberts, a. vasella, g. j. davies
Keywords: inhibitor, transition state mimic, family 1, phenethyl-substituted glucoimidazole, hydrolase
- 2cf7.pdb.
peroxide resistance 16-feb-06 2cf7
Cl Ca
Title: asp74ala mutant crystal structure for dps-like peroxide resistance protein dpr from streptococcus suis.
Author: a. kauko, a. t. pulliainen, s. haataja, j. finne, a. c. papageorgiou
Keywords: ferritin-like, ferroxidase, iron-binding, peroxide resistance
- 2cne.pdb.
hydrolase 21-may-06 2cne
F
Title: structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein tyrosine phosphatase 1b
Author: p. j. ala, l. gonneville, m. hillman, m. becker-pasha, e. w. yue, b. douty, b. wayland, p. polam, m. l. crawley, e. mclaughlin, r. b. sparks, b. glass, a. takvorian, a. p. combs, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cnf.pdb.
hydrolase 21-may-06 2cnf
Mg
Title: structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein tyrosine phosphatase 1b
Author: p. j. ala, l. gonneville, m. hillman, m. becker-pasha, e. w. yue, b. douty, b. wayland, p. polam, m. l. crawley, e. mclaughlin, r. b. sparks, b. glass, a. takvorian, a. p. combs, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cng.pdb.
hydrolase 21-may-06 2cng
Mg F
Title: structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein tyrosine phosphatase 1b
Author: p. j. ala, l. gonneville, m. hillman, m. becker-pasha, e. w. yue, b. douty, b. wayland, p. polam, m. l. crawley, e. mclaughlin, r. b. sparks, b. glass, a. takvorian, a. p. combs, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cnh.pdb.
hydrolase 21-may-06 2cnh
Ca
Title: structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein tyrosine phosphatase 1b
Author: p. j. ala, l. gonneville, m. hillman, m. becker-pasha, e. w. yue, b. douty, b. wayland, p. polam, m. l. crawley, e. mclaughlin, r. b. sparks, b. glass, a. takvorian, a. p. combs, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cni.pdb.
hydrolase 21-may-06 2cni
Cl Mg
Title: structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein tyrosine phosphatase 1b
Author: p. j. ala, l. gonneville, m. hillman, m. becker-pasha, e. w. yue, b. douty, b. wayland, p. polam, m. l. crawley, e. mclaughlin, r. b. sparks, b. glass, a. takvorian, a. p. combs, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2czo.pdb.
signaling protein 14-jul-05 2czo
(NMR, 20 structures)
Title: solution structure of the px domain of bem1p
Author: a. maeda, k. ogura, m. horiuchi, h. kumeta, y. fujioka, f. inagaki
Keywords: bem1p, phosphoinositide binding
- 2czt.pdb.
isomerase 17-jul-05 2czt
Title: lipocalin-type prostaglandin d synthase
Author: t. kumasaka, d. irikura, h. ago, k. aritake, m. yamamoto, t. inoue, m. miyano, y. urade, o. hayaishi
Keywords: c2221 native
- 2czu.pdb.
isomerase 17-jul-05 2czu
Title: lipocalin-type prostaglandin d synthase
Author: t. kumasaka, d. irikura, h. ago, k. aritake, m. yamamoto, t. inoue, m. miyano, y. urade, o. hayaishi
Keywords: lpgds_p212121 native
- 2d2x.pdb.
lyase 20-sep-05 2d2x
Co
Title: crystal structure of 2-deoxy-scyllo-inosose synthase
Author: e. nango, t. kumasaka, n. tanaka, k. kakinuma, t. eguchi
Keywords: 2-deoxystreptamine, dehydroquinate synthase
- 2d3q.pdb.
oxidoreductase 30-sep-05 2d3q
Fe
Title: crystal structure of a decolorizing peroxidase (dyp) that catalyses the biological oxidation of anthraquinone derivatives
Author: t. sato, y. sugano, m. shoda
- 2dhy.pdb.
immune system 27-mar-06 2dhy
(NMR, 20 structures)
Title: solution structure of the cue domain in the human cue domain containing protein 1 (cuedc1)
Author: c. zhao, t. kigawa, m. sato, s. koshiba, m. inoue, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: cue domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dhz.pdb.
signaling protein 27-mar-06 2dhz
(NMR, 20 structures)
Title: solution structure of the ra domain in the human link guanine nucleotide exchange factor ii (link-gefii)
Author: c. zhao, t. kigawa, m. yoneyama, s. koshiba, t. harada, s. watanabe, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: link-gefii, ra domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2di0.pdb.
transcription 27-mar-06 2di0
(NMR, 20 structures)
Title: solution structure of the cue domain in the human activating signal cointegrator 1 complex subunit 2 (ascc2)
Author: c. zhao, t. kigawa, n. tochio, s. koshiba, t. harada, s. watanabe, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: ascc2, cue domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2di7.pdb.
structural protein 29-mar-06 2di7
(NMR, 20 structures)
Title: solution structure of the filamin domain from human bk158_1 protein
Author: t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2di8.pdb.
structural protein 29-mar-06 2di8
(NMR, 20 structures)
Title: solution structure of the 19th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2di9.pdb.
structural protein 29-mar-06 2di9
(NMR, 20 structures)
Title: solution structure of the 9th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dia.pdb.
structural protein 29-mar-06 2dia
(NMR, 20 structures)
Title: solution structure of the 10th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dib.pdb.
structural protein 29-mar-06 2dib
(NMR, 20 structures)
Title: solution structure of the 11th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dic.pdb.
structural protein 29-mar-06 2dic
(NMR, 20 structures)
Title: solution structure of the 12th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2did.pdb.
protein binding 29-mar-06 2did
Zn
(NMR, 20 structures)
Title: one sequence two fold ? : correct fold of the zf-b-box domain from human tripartite motif protein 39
Author: t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: zn binding, one sequence two fold, nppsfa, national project on protein structural and functional analyses, structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2dif.pdb.
protein binding 29-mar-06 2dif
Zn
(NMR, 20 structures)
Title: one sequence two fold ? : miss fold of the zf-b-box domain from human tripartite motif protein 39
Author: t. tomizawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: zn binding, one sequence two fold, nppsfa, national project on protein structural and functional analyses, structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2dig.pdb.
dna binding protein 30-mar-06 2dig
(NMR, 20 structures)
Title: solusion structure of the todor domain of human lamin-b receptor
Author: m. yoneyama, n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2dii.pdb.
transcription 30-mar-06 2dii
(NMR, 20 structures)
Title: solution structure of the bsd domain of human tfiih basal transcription factor complex p62 subunit
Author: m. yoneyama, n. tochio, s. koshiba, s. watabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2dip.pdb.
metal binding protein 30-mar-06 2dip
Zn
(NMR, 20 structures)
Title: solution structure of the zz domain of zinc finger swim domain containing protein 2
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rsgi
- 2diq.pdb.
rna binding protein 30-mar-06 2diq
(NMR, 20 structures)
Title: solution structure of the tudor domain of tudor and kh domain containing protein
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: tudor domain, tudor and kh domain containing protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsg...
- 2dir.pdb.
rna binding protein 30-mar-06 2dir
(NMR, 20 structures)
Title: solution structure of the thump domain of thump domain- containing protein 1
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: thump domain, thump domain-containing protein 1, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dis.pdb.
rna binding protein 30-mar-06 2dis
(NMR, 20 structures)
Title: solution structure of the rrm domain of unnamed protein product
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, rrm domain, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dit.pdb.
rna binding protein 30-mar-06 2dit
(NMR, 20 structures)
Title: solution structure of the rrm_1 domain of hiv tat specific factor 1 variant
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, rrm_1 domain, hiv tat specific factor 1 variant, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2diu.pdb.
rna binding protein 30-mar-06 2diu
(NMR, 20 structures)
Title: solution structure of the rrm domain of kiaa0430 protein
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, rrm domain, kiaa0430 protein, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2div.pdb.
rna binding protein 30-mar-06 2div
(NMR, 20 structures)
Title: solution structure of the rrm domain of trna selenocysteine associated protein
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, rrm domain, trna selenocysteine associated protein, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2diw.pdb.
rna binding protein 30-mar-06 2diw
(NMR, 20 structures)
Title: solution structure of the rpr domain of putative rna- binding protein 16
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2dix.pdb.
rna binding protein 30-mar-06 2dix
(NMR, 20 structures)
Title: solution structure of the dsrm domain of protein activator of the interferon-induced protein kinase
Author: w. dang, y. muto, m. inoue, t. kigawa, m. shirouzu, t. terada, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2diz.pdb.
electron transport 30-mar-06 2diz
(NMR, 20 structures)
Title: the solution structure of the third thioredoxin domain of human thioredoxin domain-containing protein 5
Author: n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: endoplasmic reticulum protein erp46, tlp46, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj0.pdb.
structural genomics, unknown function 30-mar-06 2dj0
(NMR, 20 structures)
Title: the solution structure of the thioredoxin domain of human thioredoxin-related transmembrane protein 2
Author: n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: cgi-31 protein, txndc14, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj1.pdb.
isomerase 30-mar-06 2dj1
(NMR, 20 structures)
Title: the solution structure of the first thioredoxin domain of mouse protein disulfide-isomerase a4
Author: n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: erp72, cai, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj2.pdb.
isomerase 30-mar-06 2dj2
(NMR, 20 structures)
Title: the solution structure of the second thioredoxin domain of mouse protein disulfide-isomerase a4
Author: n. tochio, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: erp72, cai, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj3.pdb.
isomerase 30-mar-06 2dj3
(NMR, 20 structures)
Title: the solution structure of the third thioredoxin domain of mouse protein disulfide-isomerase a4
Author: n. tochio, m. sato, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: erp72, cai, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj4.pdb.
structural protein 31-mar-06 2dj4
(NMR, 20 structures)
Title: solution structure of the 13th filamin domain from human filamin-b
Author: t. tomizawa, s. koshiba, s. watanabe, t. harada, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: immunoglobulin-like fold, filamin domain, nppsfa, national project on protein structural and functional analyses, structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2dj6.pdb.
lyase 31-mar-06 2dj6
Title: crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from pyrococcus horikoshii ot3
Author: b. bagautdinov, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: x-ray diffraction, structural genomics , nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj7.pdb.
metal binding protein 31-mar-06 2dj7
Zn
(NMR, 20 structures)
Title: solution structure of 3rd lim domain of actin-binding lim protein 3
Author: t. n. niraula, a. sasagawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: actin-binding lim protein 3, zn binding protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj8.pdb.
metal binding protein 31-mar-06 2dj8
Zn
(NMR, 20 structures)
Title: solution structure of zf-mynd domain of protein cbfa2ti (protein mtg8)
Author: t. n. niraula, a. sasagawa, s. koshiba, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: protein mtg8, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dja.pdb.
metal binding protein 31-mar-06 2dja
Zn
(NMR, 20 structures)
Title: solution structure of the b-box domain of the human midline- 2 protein
Author: k. miyamoto, t. kigawa, t. tomizawa, s. koshiba, m. inoue, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: tripartite motif protein 1, mid2, zf-b_box, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dua.pdb.
hydrolase 21-jul-06 2dua
Cl Mg Na
Title: crystal structure of phosphonopyruvate hydrolase complex with oxalate and mg++
Author: o. herzberg, c. chen
Keywords: phosphonopyruvate, phosphorus- carbon bond cleavage, pep mutase/isocitrate lyase superfamily
- 2dux.pdb.
oxidoreductase 27-jul-06 2dux
F
Title: crystal structure of human aldose reductase complexed with zopolrestat after 3 days soaking (3days_soaked_1)
Author: h. steuber, a. heine, g. klebe
- 2duz.pdb.
oxidoreductase 27-jul-06 2duz
F
Title: human aldose reductase complexed with inhibitor zopolrestat after 3 days soaking (3days_soaked_2)
Author: h. steuber, a. heine, g. klebe
- 2dv0.pdb.
oxidoreductase 28-jul-06 2dv0
F
Title: human aldose reductase complexed with zopolrestat after 6 days soaking(6days_soaked_2)
Author: h. steuber, a. heine, g. klebe
- 2dxq.pdb.
transferase 30-aug-06 2dxq
Se
Title: putative acetyltransferase from agrobacterium tumefaciens str. c58
Author: t. a. binkowski, x. xu, a. edwards, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2dyx.pdb.
metal binding protein 19-sep-06 2dyx
Zn Fe
Title: structure of the complex of lactoferrin c-lobe with melibiose at 2.0 a resolution
Author: r. mir, r. prem kumar, m. sinha, n. singh, s. sharma, p. kaur, a. bhushan, t. p. singh
Keywords: lactoferrin, melibiose, complex
- 2erm.pdb.
hormone/growth factor 25-oct-05 2erm
(NMR, 20 structures)
Title: solution structure of a biologically active human fgf-1 monomer, complexed to a hexasaccharide heparin-analogue
Author: a. canales, r. lozano, p. m. nieto, m. martin-lomas, g. gimenez- gallego, j. jimenez-barbero
Keywords: fibroblast growth factor, protein-carbohydrate complex
- 2esa.pdb.
chaperone 25-oct-05 2esa
Title: grp94 n-terminal domain bound to geldanamycin: effects of mutants 168-169 ks-aa
Author: r. m. immormino, l. e. metzger iv, d. t. gewirth
- 2f6f.pdb.
hydrolase 29-nov-05 2f6f
Cl Mg
Title: the structure of the s295f mutant of human ptp1b
Author: j. montalibet, k. skorey, d. mckay, g. scapin, e. asante-appiah, b. p. kennedy
Keywords: ligand binding, mutations
- 2faw.pdb.
transferase 08-dec-05 2faw
Zn
Title: crystal structure of papaya glutaminyl cyclase
Author: r. wintjens, h. belrhali, b. clantin, m. azarkan, c. bompard, d. baeyens-volant, y. looze, v. villeret
- 2fcc.pdb.
hydrolase 12-dec-05 2fcc
Br
Title: crystal structure of t4 pyrimidine dimer glycosylase (t4- pdg) covalently complexed with a dna substrate containing abasic site
Author: g. golan, d. o. zharkov, a. s. fernandes, m. l. dodson, a. k. mccullough, a. p. grollman, r. s. lloyd, g. shoham
Keywords: pyrimidine dimer, dna repair, endonuclease, enzyme- dna complex, covalent intermediate
- 2ffk.pdb.
virus/viral protein/cytokine 19-dec-05 2ffk
(NMR, minimized average structure)
Title: solution structure of the complex between poxvirus-encoded cc chemokine inhibitor vcci and human mip-1beta, minimized average structure
Author: l. zhang
Keywords: chemokine, pox virus, viral cc chemokine inhibitor
- 2fg9.pdb.
structural genomics, unknown function 21-dec-05 2fg9
Ni Se
Title: crystal structure of (np_811990.1) from bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2fin.pdb.
virus/viral protein/cytokine 29-dec-05 2fin
(NMR, 15 structures)
Title: solution structure of the complex between poxvirus-encoded cc chemokine inhibitor vcci and human mip-1beta, ensemble structure
Author: l. zhang
Keywords: chemokine, pox virus, viral cc chemokine inhibitor
- 2fio.pdb.
transcription/dna 30-dec-05 2fio
Title: phage phi29 transcription regulator p4-dna complex
Author: d. badia, a. camacho, l. perez-lago, c. escandon, m. salas, m. coll
- 2fip.pdb.
transcription 30-dec-05 2fip
Title: phage phi29 transcription regulator p4
Author: d. badia, a. camacho, l. perez-lago, c. escandon, m. salas, m. coll
- 2fkf.pdb.
isomerase 04-jan-06 2fkf
Zn
Title: phosphomannomutase/phosphoglucomutase from pseudomonas aeruginosa with alpha-d-glucose 1,6-bisphosphate bound
Author: c. a. regni, l. j. beamer
Keywords: phosphoserine, enzyme-metal complex, enzyme-ligand complex
- 2fkm.pdb.
isomerase 04-jan-06 2fkm
Zn
Title: pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound
Author: c. a. regni, l. j. beamer
Keywords: enzyme-metal complex, enzyme-ligand complex
- 2fm4.pdb.
transferase 06-jan-06 2fm4
(NMR, 11 structures)
Title: nmr structure of the phosphoryl carrier domain of pyruvate phosphate dikinase
Author: j. b. ames
- 2fnw.pdb.
metal binding protein 11-jan-06 2fnw
Re Cu
Title: pseudomonas aeruginosa e2q/h83q/m109h-azurin re(phen)(co)3
Author: c. gradinaru, b. r. crane
Keywords: electron-transfer, rhenium, infrared spectroscopy
- 2fwy.pdb.
chaperone 03-feb-06 2fwy
Br
Title: structure of human hsp90-alpha bound to the potent water soluble inhibitor pu-h64
Author: r. m. immormino, d. t. gewirth
Keywords: grp94, chaperone, purine, pu3, h64, h71
- 2fwz.pdb.
chaperone 03-feb-06 2fwz
I
Title: structure of human hsp90-alpha bound to the potent water soluble inhibitor pu-h71
Author: r. m. immormino, d. t. gewirth
Keywords: grp94, chaperone, purine, pu3, h64, h71
- 2fyn.pdb.
oxidoreductase 08-feb-06 2fyn
Fe
Title: crystal structure analysis of the double mutant rhodobacter sphaeroides bc1 complex
Author: l. esser, d. xia
Keywords: functional dimer
- 2fz8.pdb.
oxidoreductase 09-feb-06 2fz8
F
Title: human aldose reductase complexed with inhibitor zopolrestat at 1.48 a(1 day soaking).
Author: h. steuber, m. zentgraf, c. gerlach, c. a. sotriffer, a. heine, g. klebe
Keywords: backbone flip
- 2fz9.pdb.
oxidoreductase 09-feb-06 2fz9
F
Title: human aldose reductase complexed with inhibitor zopolrestat after six days soaking.
Author: h. steuber, m. zentgraf, c. gerlach, c. a. sotriffer, a. heine, g. klebe
Keywords: backbone flip
- 2fzb.pdb.
oxidoreductase 09-feb-06 2fzb
F
Title: human aldose reductase complexed with four tolrestat molecules at 1.5 a resolution.
Author: h. steuber, m. zentgraf, c. gerlach, c. a. sotriffer, a. heine, g. klebe
Keywords: four ligand structure
- 2fzd.pdb.
oxidoreductase 09-feb-06 2fzd
F
Title: human aldose reductase complexed with tolrestat at 1.08 a resolution.
Author: h. steuber, m. zentgraf, c. gerlach, c. a. sotriffer, a. heine, g. klebe
Keywords: high resolution crystal structure, protein- ligand complex
- 2g00.pdb.
hydrolase 10-feb-06 2g00
F
Title: factor xa in complex with the inhibitor 3-(6-(2'- ((dimethylamino)methyl)-4-biphenylyl)-7-oxo-3- (trifluoromethyl)-4,5,6,7-tetrahydro-1h-pyrazolo[3,4- c]pyridin-1-yl)benzamide
Author: r. s. alexander
Keywords: hydrolase, serine protease, plasma, blood coagulation factor, protein inhibitor complex, calcium- binding
- 2g1q.pdb.
cell cycle 14-feb-06 2g1q
Mg F
Title: crystal structure of ksp in complex with inhibitor 9h
Author: y. yan
Keywords: ksp-inhibitor complex
- 2g2l.pdb.
membrane protein 16-feb-06 2g2l
Title: crystal structure of the second pdz domain of sap97 in complex with a glur-a c-terminal peptide
Author: i. von ossowski, e. oksanen, l. von ossowski, c. cai, m. sundberg, a. goldman, k. keinanen
Keywords: synaptic signaling, trafficking protein
- 2g3h.pdb.
transport protein 20-feb-06 2g3h
Cl Mg Fe
Title: cyanide binding and heme cavity conformational transitions in drosophila melanogaster hexa-coordinate hemoglobin
Author: d. de sanctis, p. ascenzi, a. bocedi, s. dewilde, t. burmester, t. hankeln, l. moens, m. bolognesi
- 2g5g.pdb.
transport protein 22-feb-06 2g5g
Fe Se
Title: cofacial heme binding to chan of campylobacter jejuni
Author: a. c. chan, m. e. murphy
Keywords: tyrosine ligand, dimer
- 2g5q.pdb.
ribonucleic acid 23-feb-06 2g5q
Title: crystal structures of the bacterial ribosomal decoding site complexed with amikacin.
Author: j. kondo, b. francois, r. j. m. russell, j. b. murray, e. westhof
Keywords: haba group, ribosomal decoding site, x-ray analysis, rna, amikacin
- 2g75.pdb.
immune system 27-feb-06 2g75
Title: crystal structure of anti-sars m396 antibody
Author: p. prabakaran, j. h. gan, y. feng, z. y. zhu, x. d. xiao, x. ji, d. s. dimitrov
Keywords: s protein, antibody, crystal structure, epitopes, vaccines, inhibitors
- 2g7c.pdb.
toxin 28-feb-06 2g7c
Title: clostridium difficile toxin a fragment bound to agal(1,3) bgal(1,4)bglcnac
Author: a. greco, j. g. s. ho, s. j. lin, m. m. palcic, m. rupnik, k. k. s. ng
Keywords: protein-carbohydrate complex, bacterial toxin
- 2ga1.pdb.
structural genomics, unknown function 07-mar-06 2ga1
Se
Title: crystal structure of (yp_321193.1) from anabaena variabilis atcc 29413 at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2gcs.pdb.
ribonucleic acid 14-mar-06 2gcs
Mg
Title: pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
- 2gcv.pdb.
ribonucleic acid 14-mar-06 2gcv
Mg
Title: post-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
- 2gd3.pdb.
unknown function 15-mar-06 2gd3
(NMR, 14 structures)
Title: nmr structure of s14g-humanin in 30% tfe solution
Author: d. benaki, c. zikos, a. evangelou, e. livaniou, m. vlassi, e. mikros, m. pelecanou
- 2gfr.pdb.
neuropeptide 23-mar-06 2gfr
(NMR, 20 structures)
Title: solution structure of amphibian tachykinin uperolein bound to dpc micelles
Author: a dike, s. m. cowsik
Keywords: 3-10 helix, lipid induced conformation, dpc micelles
- 2git.pdb.
immune system 29-mar-06 2git
Na
Title: human class i mhc hla-a2 in complex with the modified htlv- 1 tax (y5k-4-[3-indolyl]-butyric acid) peptide
Author: o. y. borbulevych, b. m. baker
Keywords: htlv-1 tax peptide, haptenated peptide, lysine-4-(3-indolyl)-butyric acid, mhc class i,hla- a2
- 2gj6.pdb.
immune system 30-mar-06 2gj6
Title: the complex between tcr a6 and human class i mhc hla-a2 with the modified htlv-1 tax (y5k-4-[3-indolyl]-butyric acid) peptide
Author: o. y. borbulevych, b. m. baker
Keywords: htlv-1 tax peptide, haptenated peptide, lysine-4-(3-indolyl)-butyric acid, mhc class i,hla- a2, t-cell receptor a6
- 2gjj.pdb.
immune system 31-mar-06 2gjj
Title: crystal structure of a single chain antibody sca21 against her2/erbb2
Author: z. zhu
Keywords: scfv
- 2glz.pdb.
structural genomics, unknown function 05-apr-06 2glz
Zn Ni Se
Title: crystal structure of formylmethanofuran dehydrogenase subunit e-like protein (zp_01368882.1) from desulfitobacterium halfniense dcb-2 at 1.45 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2gms.pdb.
transferase 07-apr-06 2gms
Mg
Title: e coli gdp-4-keto-6-deoxy-d-mannose-3-dehydratase with bound hydrated plp
Author: p. d. cook, j. b. thoden, h. m. holden
Keywords: 0-antigen, aspartate aminotransferase, plp, deoxysugar
- 2gmu.pdb.
transferase 07-apr-06 2gmu
Mg
Title: crystal structure of e coli gdp-4-keto-6-deoxy-d-mannose-3- dehydratase complexed with plp-glutamate ketimine intermediate
Author: p. d. cook, j. b. thoden, h. m. holden
Keywords: deoxysugar, aspartate aminotransferase, plp, o- antigen
- 2gnc.pdb.
signaling protein 10-apr-06 2gnc
Title: crystal structure of srgap1 sh3 domain in the slit-robo signaling pathway
Author: x. li, y. liu, f. gao, m. bartlam, j. y. wu, z. rao
- 2gnq.pdb.
transcription 10-apr-06 2gnq
Cl
Title: structure of wdr5
Author: j. min, a. schuetz, a. allali-hassani, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2gr9.pdb.
oxidoreductase 23-apr-06 2gr9
Title: crystal structure of p5cr complexed with nadh
Author: z. meng, z. lou, z. liu, z. rao
Keywords: human pyrroline-5-carboxylate reductase, nadh
- 2gra.pdb.
oxidoreductase 23-apr-06 2gra
Title: crystal structure of human pyrroline-5-carboxylate reductase complexed with nadp
Author: z. meng, z. lou, z. liu, z. rao
Keywords: human pyrroline-5-carboxylate reductase, nadph
- 2gsc.pdb.
unknown function 26-apr-06 2gsc
Title: crystal structure of the conserved hypothetical cytosolic protein xcc0516 from xanthomonas campestris
Author: l. y. lin, c. l. ching, k. h. chin, s. h. chou, n. l. chan
Keywords: homopentamer, pentameric toroid
- 2guz.pdb.
chaperone, protein transport 02-may-06 2guz
Title: structure of the tim14-tim16 complex of the mitochondrial protein import motor
Author: d. mokranjac, g. bourenkov, k. hell, w. neupert, m. groll
- 2gvk.pdb.
oxidoreductase 02-may-06 2gvk
Cl Na Se
Title: crystal structure of a dye-decolorizing peroxidase (dyp) from bacteroides thetaiotaomicron vpi-5482 at 1.6 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: , structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, heme peroxidase
- 2h0s.pdb.
ribonucleic acid 15-may-06 2h0s
Mg I
Title: pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
Keywords: ribozyme, pseudoknot, helix
- 2h0w.pdb.
ribonucleic acid 15-may-06 2h0w
Mg
Title: post-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
Keywords: ribozyme, pseudoknot, helix
- 2h0x.pdb.
ribonucleic acid 15-may-06 2h0x
Mg
Title: pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
Keywords: ribozyme, pseudoknot, helix
- 2h0z.pdb.
ribonucleic acid 15-may-06 2h0z
Mg
Title: pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme bound to glucose-6-phosphate
Author: d. j. klein, a. r. ferre-d'amare
Keywords: ribozyme, pseudoknot, helix
- 2h1t.pdb.
structural genomics, unknown function 16-may-06 2h1t
Se
Title: crystal structure of hypothetical protein (np_250684.1) from pseudomonas aeruginosa at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
- 2h2w.pdb.
transferase 19-may-06 2h2w
Title: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46) (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga maritima at 2.52 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: homoserine o-succinyltransferase, (ec 2.3.1.46), homoserine o-transsuccinylase, hts, (tm0881), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2h2x.pdb.
ribonucleic acid 19-may-06 2h2x
(NMR, 20 structures)
Title: solution structure of the tetrahymena telomerase rna stem iv terminal loop
Author: r. j. richards, h. wu, l. trantirek, c. m. o'connor, k. collins, j. feigon
Keywords: c-u base pair
- 2h3o.pdb.
membrane protein 22-may-06 2h3o
(NMR)
Title: structure of merft, a membrane protein with two trans- membrane helices
Author: s. j. opella, a. a. de angelis, s. c. howell, a. a. nevzorov
Keywords: alpha-helix, bicelle
- 2h3s.pdb.
de novo protein 23-may-06 2h3s
(NMR, 20 structures)
Title: cis-azobenzene-avian pancreatic polypeptide bound to dpc micelles
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: photoswitch
- 2h3t.pdb.
de novo protein 23-may-06 2h3t
(NMR, 20 structures)
Title: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc micelles
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: pp folding
- 2h4b.pdb.
de novo protein 24-may-06 2h4b
(NMR, 20 structures)
Title: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic polypeptide
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: folding, nmr
- 2h55.pdb.
chaperone 25-may-06 2h55
F I
Title: structure of human hsp90-alpha bound to the potent water soluble inhibitor pu-dz8
Author: r. m. immormino, d. t. gewirth
Keywords: grp94, chaperone, purine, pu3, h64, h71, dz8
- 2h5c.pdb.
hydrolase 25-may-06 2h5c
Title: 0.82a resolution crystal structure of alpha-lytic protease at ph 5
Author: c. n. fuhrmann, m. d. daugherty, d. a. agard
Keywords: serine protease, ultra-high resolution, acylation transition state, catalysis, protein folding, protein stability, packing distortion
- 2h5d.pdb.
hydrolase 25-may-06 2h5d
B
Title: 0.9a resolution crystal structure of alpha-lytic protease complexed with a transition state analogue, meosuc-ala-ala- pro-val boronic acid
Author: c. n. fuhrmann, d. a. agard
Keywords: serine protease, ultra-high resolution, acylation transition state, catalysis, protein folding, protein stability, packing distortion
- 2h6b.pdb.
dna binding protein 31-may-06 2h6b
Cl
Title: crystal structure of oxidized cprk in complex with o- chlorophenolacetic acid
Author: m. g. joyce, c. levy, d. leys
Keywords: dna binding, chlorinated ligand, chlorophenol, cprk, helix-turn-helix
- 2h6c.pdb.
dna binding protein 31-may-06 2h6c
Title: crystal structure of reduced cprk in absence of any ligand
Author: c. levy, d. leys
Keywords: helix-turn-helix, chlorophenol, halorespiration, cprk
- 2h84.pdb.
biosynthetic protein, transferase 06-jun-06 2h84
Title: crystal structure of the c-terminal type iii polyketide synthase (pks iii) domain of 'steely1' (a type i/iii pks hybrid from dictyostelium)
Author: m. b. austin, t. saito, m. e. bowman, s. haydock, a. kato, b. s. moore, r. r. kay, j. p. noel
Keywords: type iii polyketide synthase, pks, chalcone- stilbene synthase superfamily, type i pks, type i fatty acid synthase, fas
- 2h8b.pdb.
hormone/growth factor 07-jun-06 2h8b
(NMR, 20 structures)
Title: solution structure of insl3
Author: k. j. rosengren, d. j. craik, n. l. daly
- 2h9l.pdb.
structural genomics, gene regulation 10-jun-06 2h9l
Title: wdr5delta23
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9m.pdb.
structural genomics, gene regulation 10-jun-06 2h9m
Title: wdr5 in complex with unmodified h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9n.pdb.
structural genomics, gene regulation 10-jun-06 2h9n
Title: wdr5 in complex with monomethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9o.pdb.
structural genomics, gene regulation 10-jun-06 2h9o
Title: wdr5 in complex with dimethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9p.pdb.
structural genomics, gene regulation 10-jun-06 2h9p
Title: wdr5 in complex with trimethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2haz.pdb.
cell adhesion 13-jun-06 2haz
Na
Title: crystal structure of the first fibronectin domain of human ncam1
Author: n. sekulic, a. lavie
Keywords: fn1, ncam, beta sandwich
- 2hd6.pdb.
lyase 20-jun-06 2hd6
Hg Cl Zn
Title: crystal structure of the human carbonic anhydrase ii in complex with a hypoxia-activatable sulfonamide.
Author: g. de simone, r. m. vitale, a. di fiore, c. pedone
- 2hjk.pdb.
immune system 30-jun-06 2hjk
Title: crystal structure of hla-b5703 and hiv-1 peptide
Author: g. m. a. gillespie, g. stewart-jones, j. rengasamy, t. beattie, j. j. bwayo, f. a. plummer
Keywords: hla, hiv
- 2hjl.pdb.
immune system 30-jun-06 2hjl
Title: crystal structure of hla-b5703 and hiv-1 peptide
Author: g. m. a. gillespie, g. stewart-jones, j. rengasamy, t. beattie, j. j. bwayo, f. a. plummer
Keywords: hla, hiv
- 2hjp.pdb.
hydrolase 30-jun-06 2hjp
Cl Mg Na
Title: crystal structure of phosphonopyruvate hydrolase complex with phosphonopyruvate and mg++
Author: c. c. h. chen, o. herzberg
Keywords: phosphonopyruvate, phosporus- carbon bond cleavage, pep mutase/isocitrate lyase superfamily
- 2hkb.pdb.
deoxyribonucleic acid 03-jul-06 2hkb
(NMR, 10 structures)
Title: nmr structure of the b-dna dodecamer ctcggcgccatc
Author: f. wang, n. e. demuro, c. e. elmquist, j. s. stover, c. j. rizzo, m. p. stone
Keywords: nmr structure, rmd calculations, anneal, noesy, cosy, hsqc
- 2hkc.pdb.
deoxyribonucleic acid 03-jul-06 2hkc
(NMR, 8 structures)
Title: nmr structure of the iq-modified dodecamer ctcggc[iq]gccatc
Author: f. wang, n. e. demuro, c. e. elmquist, j. s. stover, c. j. rizzo, m. p. stone
Keywords: nar1iq3, rmd calculations, anneal, noesy, cosy, refinement, iq, adduct, hca, dna
- 2hkj.pdb.
isomerase 04-jul-06 2hkj
Cl Mg
Title: topoisomerase vi-b bound to radicicol
Author: k. d. corbett, j. m. berger
Keywords: ghkl, drug complex, radicicol
- 2hle.pdb.
transferase/transferase receptor 06-jul-06 2hle
Title: structural and biophysical characterization of the ephb4- ephrinb2 protein protein interaction and receptor specificity
Author: j. e. chrencik, a. brooun, p. kuhn
Keywords: receptor tryosine kinase, bi- directional cell signaling
- 2hls.pdb.
oxidoreductase 10-jul-06 2hls
Cl
Title: the crystal structure of a protein disulfide oxidoreductase from aeropyrum pernix k1
Author: k. d'ambrosio, g. de simone
Keywords: thioredoxin fold
- 2hms.pdb.
membrane protein 11-jul-06 2hms
Title: rectangular-shaped octameric ring structure of an rck domain with nadh bound
Author: r. a. albright, j. h. morais-cabral
Keywords: ktn, ktr, ktra, ktrab, membrane protein, ion transporter, symporter
- 2hmt.pdb.
transport protein 11-jul-06 2hmt
Title: diamond-shaped octameric ring structure of an rck domain with nadh bound
Author: r. a. albright, j. h. morais-cabral
Keywords: ktn, ktr, ktra, ktrab, membrane protein, ion transporter, symporter
- 2hmu.pdb.
transport protein 11-jul-06 2hmu
Title: diamond-shaped octameric ring structure of an rck domain with atp bound
Author: r. a. albright, j. h. morais-cabral
Keywords: ktn, ktr, ktra, ktrab, membrane protein, ion transporter, symporter
- 2hmv.pdb.
transport protein 11-jul-06 2hmv
Title: diamond-shaped octameric ring structure of an rck domain with adp bound
Author: r. a. albright, j. h. morais-cabral
Keywords: ktn, ktr, ktra, ktrab, membrane protein, ion transporter, symporter
- 2hmw.pdb.
transport protein 11-jul-06 2hmw
Title: square-shaped octameric ring structure of an rck domain with atp bound
Author: r. a. albright, j. h. morais-cabral
Keywords: ktn, ktr, ktra, ktrab, membrane protein, ion transporter, symporter
- 2ho6.pdb.
ribonucleic acid 13-jul-06 2ho6
Mg
Title: post-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
Author: d. j. klein, a. r. ferre-d'amare
- 2ho7.pdb.
ribonucleic acid 13-jul-06 2ho7
Mg
Title: pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme bound to glucose-6-phosphate
Author: d. j. klein, a. r. ferre-d'amare
- 2hpo.pdb.
hydrolase 17-jul-06 2hpo
Zn
Title: structure of aminopeptidase n from e. coli suggests a compartmentalized, gated active site
Author: a. addlagatta, b. w. matthews, l. gay
Keywords: closed, compartmentalized active site
- 2hpt.pdb.
hydrolase 17-jul-06 2hpt
Zn
Title: crystal structure of e. coli pepn (aminopeptidase n)in complex with bestatin
Author: a addlagatta, b. w. matthews, l. gay
Keywords: compartmentalized active site
- 2hrw.pdb.
hydrolase 20-jul-06 2hrw
Cl Na
Title: crystal structure of phosphonopyruvate hydrolase
Author: c. c. h. chen, o. herzberg
Keywords: phosphorus-carbon bond cleavage, phosphonopyruvate, pep mutase/isocitrate lyase superfamily
- 2hs1.pdb.
hydrolase 20-jul-06 2hs1
Cl
Title: ultra-high resolution x-ray crystal structure of hiv-1 protease v32i mutant with tmc114 (darunavir) inhibitor
Author: i. t. weber, a. y. kovalevsky
- 2hs2.pdb.
hydrolase 20-jul-06 2hs2
Cl
Title: crystal structure of m46l mutant of hiv-1 protease complexed with tmc114 (darunavir)
Author: i. t. weber, a. y. kovalevsky, f. liu
- 2hsb.pdb.
structural genomics, unknown function 21-jul-06 2hsb
Se
Title: crystal structure of hypothetical protein (np_069135.1) from archaeoglobus fulgidus at 1.95 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, psi- 2, protein structure initiative, joint center for structural genomics, jcsg
- 2huh.pdb.
structural genomics, unknown function 26-jul-06 2huh
Mg Se
Title: crystal structure of putative dna mismatch repair protein (np_811092.1) from bacteroides thetaiotaomicron vpi-5482 at 1.54 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
- 2hv5.pdb.
oxidoreductase 27-jul-06 2hv5
F
Title: human aldose reductase complexed with inhibitor zopolrestat after three days soaking (3days_soaked_3)
Author: h. steuber, a. heine, g. klebe
- 2hvn.pdb.
oxidoreductase 29-jul-06 2hvn
F
Title: human aldose reductase-zopolrestat complex obtained by cocrystallisation after one day (1day_cocryst)
Author: h. steuber, a. heine, g. klebe
- 2hvo.pdb.
oxidoreductase 29-jul-06 2hvo
F
Title: human aldose reductase-zopolrestat complex obtained by cocrystallisation (10days_cocryst)
Author: h. steuber, a. heine, g. klebe
- 2hxj.pdb.
structural genomics, unknown function 03-aug-06 2hxj
Se
Title: structural genomics, the crystal structure of a hypothetical protein nmb1681 from neisseria meningitidis mc58
Author: k. tan, m. zhou, e. duggan, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: neisseria meningitidis mc58, hypothetical protein, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hye.pdb.
protein binding 05-aug-06 2hye
Zn
Title: crystal structure of the ddb1-cul4a-rbx1-sv5v complex
Author: s. angers, t. li, x. yi, m. j. maccoss, r. t. moon, n. zheng
Keywords: ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats
- 2i13.pdb.
dna binding protein/dna 12-aug-06 2i13
Zn
Title: aart, a six finger zinc finger designed to recognize ann triplets
Author: n. c. horton, d. j. segal, m. bhakta, j. w. crotty, c. f. barbas iii
Keywords: zinc finger
- 2i4k.pdb.
protein transport 22-aug-06 2i4k
(NMR, 10 structures)
Title: solution structure of the px domain of sorting nexin 1
Author: m. j. watson, q. zhong, c. s. lazar, a. m. hounslow, g. n. gill, j. p. waltho
Keywords: 3 alpha helices, proline rich loop
- 2i5g.pdb.
hydrolase 24-aug-06 2i5g
Se
Title: crystal strcuture of amidohydrolase from pseudomonas aeruginosa
Author: t. min, j. m. sauder, s. r. wasserman, d. smith, s. k. burley, l. shapiro, new york structural genomics research consortium (nysgrc)
Keywords: nysgxrc-9311a, psi2, amidohydrolase, structural genomics, protein structure initiative, new york structural genomics research consortium
- 2i68.pdb.
transport protein 28-aug-06 2i68
(cryo-electron microscopy)
Title: cryo-em based theoretical model structure of transmembrane domain of the multidrug-resistance antiporter from e. coli emre
Author: s. j. fleishman, s. e. harrington, a. enosh, d. halperin, c. g. tate, n. ben-tal
Keywords: small-multidrug resistance, transporter, homodimer, dual topology
- 2i71.pdb.
structural genomics, unknown function 30-aug-06 2i71
Mg Se
Title: structural genomics, the crystal structure of a conserved hypothetical protein from sulfolobus solfataricus p2
Author: k. tan, t. skarina, o. onopriyenko, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc6294, conserved hypothetical protein, sulfolobus solfataricus p2, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i76.pdb.
structural genomics, unknown function 30-aug-06 2i76
Se
Title: crystal structure of hypothetical protein tm1727 from thermatoga maritima
Author: m. madegowda, s. eswaramoorthy, j. seetharaman, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: dehydrogenase, tm1727, t1650, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2i7g.pdb.
oxidoreductase 30-aug-06 2i7g
Se
Title: crystal structure of monooxygenase from agrobacterium tumefaciens
Author: y. kim, x. xu, h. zheng, a. joachimiak, a. edwards, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: tim barrel, helix-bundle, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i7h.pdb.
oxidoreductase 30-aug-06 2i7h
Se
Title: crystal structure of the nitroreductase-like family protein from bacillus cereus
Author: y. kim, h. li, s. moy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i87.pdb.
ligase 01-sep-06 2i87
Title: allosteric inhibition of staphylococcus aureus d-alanine:d- alanine ligase revealed by crystallographic studies
Author: s. liu, j. s. chang, j. t. herberg, m. horng, p. k. tomich, a. h. lin, k. r. marotti
Keywords: apo
- 2i8g.pdb.
structural genomics, unknown function 01-sep-06 2i8g
Se
Title: crystal structure of hypothetical protein dip2269 from corynebacterium diphtheriae
Author: j. osipiuk, e. duggan, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc82926, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i9c.pdb.
structural genomics, unknown function 05-sep-06 2i9c
Se
Title: crystal structure of the protein rpa1889 from rhodopseudomonas palustris cga009
Author: m. t. cymborowski, e. evdokimova, o. kagan, m. chruszcz, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: sad, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i9x.pdb.
structural genomics, unknown function 06-sep-06 2i9x
Se
Title: structural genomics, the crystal structure of spovg conserved domain from staphylococcus epidermidis atcc 12228
Author: k. tan, n. maltseva, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: spovg, staphylococcus epidermidis atcc 12228, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2ia1.pdb.
structural genomics, unknown function 06-sep-06 2ia1
Title: structure of hypothetical protein bh3703 from bacillus halodurans
Author: u. a. ramagopal, m. russell, r. toro, j. c. freeman, c. reyes, t. gheyi, j. m. sauder, s. k. burley, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2ibo.pdb.
structural genomics, unknown function 11-sep-06 2ibo
Se
Title: crystal structure of the hypothetical protein sp2199 from streptococcus pneumoniae, northeast structural genomics target spr31
Author: j. seetharaman, m. abashidze, f. forouhar, r. shastry, k. conover, k. cunningham, l. c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2ich.pdb.
structural genomics/unknown function 12-sep-06 2ich
Se
Title: crystal structure of a putative atth (np_841447.1) from nitrosomonas europaea at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
- 2icx.pdb.
transferase 13-sep-06 2icx
Title: crystal structure of a putative udp-glucose pyrophosphorylase from arabidopsis thaliana with bound utp
Author: j. g. mccoy, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: utp, putative udp-glucose pyrophosphorylase, structural genomics functional follow-up study, structural genomics, protein structure initiative, psi, cesg, center for eukaryotic structural genomics
- 2icy.pdb.
transferase 13-sep-06 2icy
Title: crystal structure of a putative udp-glucose pyrophosphorylase from arabidopsis thaliana with bound udp- glucose
Author: j. g. mccoy, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: udp, putative udp-glucose pyrophosphorylase, structural genomics functional follow-up study, structural genomics, protein structure initiative, psi, cesg, center for eukaryotic structural genomics
- 2id0.pdb.
hydrolase 13-sep-06 2id0
Mn Se
Title: escherichia coli rnase ii
Author: y. zuo, j. zhang, y. wang, a. malhotra
Keywords: exoribonuclease, ribonuclease, exonuclease, nuclease, hydrolyase, mrna decay, rnr family
- 2idw.pdb.
hydrolase 15-sep-06 2idw
Cl
Title: crystal structure analysis of hiv-1 protease mutant v82a with a potent non-peptide inhibitor (uic-94017)
Author: y. tie, p. i. boross, y. f. wang, l. gaddis, d. manna, a. k. hussain, s. leshchenko, a. k. ghosh, j. m. louis, r. w. harrison, i. t. weber
Keywords: mutant, dimer, inhibitor, uic-94017
- 2iea.pdb.
oxidoreductase 18-sep-06 2iea
Mg
Title: e. coli pyruvate dehydrogenase
Author: w. furey, p. arjunan
Keywords: pyruvate, alpha-keto acid dehydrogenase
- 2iec.pdb.
structural genomics, unknown function 18-sep-06 2iec
Mg
Title: crystal structure of uncharacterized conserved archael protein from methanopyrus kandleri
Author: j. b. bonanno, u. a. ramagopal, m. dickey, k. t. bain, a. powell, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2iee.pdb.
structural genomics, unknown function 18-sep-06 2iee
Se
Title: crystal structure of yckb_bacsu from bacillus subtilis. northeast structural genomics consortium target sr574.
Author: a. p. kuzin, m. su, s. jayaraman, x. c. chen, m. jang, k. cunningham, c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: nesg, x-ray, yckb, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2ien.pdb.
hydrolase 19-sep-06 2ien
Cl Na
Title: crystal structure analysis of hiv-1 protease with a potent non-peptide inhibitor (uic-94017)
Author: y. tie, p. i. boross, y. f. wang, l. gaddis, d. manna, a. k. hussain, s. leshchenko, a. k. ghosh, j. m. louis, r. w. harrison, i. t. weber
Keywords: dimer, inhibitor, uic-94017, tmc114, darunavir
- 2ieo.pdb.
hydrolase 19-sep-06 2ieo
Cl Na
Title: crystal structure analysis of hiv-1 protease mutant i84v with a potent non-peptide inhibitor (uic-94017)
Author: y. tie, p. i. boross, y. f. wang, l. gaddis, d. manna, a. k. hussain, s. leshchenko, a. k. ghosh, j. m. louis, r. w. harrison, i. t. weber
Keywords: mutant, i84v, dimer, inhibitor, uic-94017, tmc114, darunavir
- 2if2.pdb.
transferase 19-sep-06 2if2
Se
Title: crystal structure of the putative dephospho-coa kinase from aquifex aeolicus, northeast structural genomics target qr72.
Author: f. forouhar, m. hussain, j. seetharaman, a. hussain, m. wu, y. fang, k. cunningham, l. c. ma, r. xiao, j. liu, m. baran, b. rost, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2if6.pdb.
structural genomics, unknown function 20-sep-06 2if6
U
Title: crystal structure of hypothetical metalloprotein yiix from escherichia coli o157:h7
Author: j. b. bonanno, j. gilmore, k. t. bain, a. powell, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: metalloprotein, hypothetical, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2ifa.pdb.
structural genomics, unknown function 20-sep-06 2ifa
Se
Title: crystal structure of the putative nitroreductase (smu.260) in complex with fmn from streptococcus mutans, northeast structural genomics target smr5.
Author: f. forouhar, y. chen, r. xiao, l. c. ma, t. byler, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
- 2ifr.pdb.
hydrolase 21-sep-06 2ifr
Title: crystal structure of scytalido-glutamic peptidase with a peptide based transition state analog
Author: b. pillai, m. m. cherney, k. hiraga, k. takada, k. oda, m. n. g. james
Keywords: enzyme-transition state analog complex
- 2ifw.pdb.
hydrolase 21-sep-06 2ifw
Title: crystal structure of scytalido-glutamic peptidase with a transition state analog inhibitor
Author: b. pillai, m. m. cherney, k. hiraga, k. takada, k. oda, m. n. g. james
Keywords: enzyme-inhibitor complex
- 2igz.pdb.
antibiotic 25-sep-06 2igz
(NMR, 19 structures)
Title: nmr structure of the sterol-dependent antifungal antibiotic bacillomycin lc
Author: l. volpon, p. tsan, f. besson, j. m. lancelin
Keywords: antifungal, bacillomycin lc, cyclic lipopeptide
- 2ih0.pdb.
antibiotic 25-sep-06 2ih0
(NMR, 31 structures)
Title: nmr structure determination of a synthetic analogue of the iturinic antibiotic bacillomycin lc
Author: l. volpon, p. tsan, f. besson, j. lancelin
Keywords: synthetic peptide, cyclopeptide, bacillomycin lc
- 2izp.pdb.
toxin 25-jul-06 2izp
Title: bipd - an invasion prtein associated with the type-iii secretion system of burkholderia pseudomallei.
Author: p. t. erskine, m. j. knight, a. ruaux, h. mikolajek, n. wong-fat-sang, j. withers, r. gill, s. p. wood, m. wood, g. c. fox, j. b. cooper
Keywords: invasion protein, toxin, type-iii secretion system
- 2j00.pdb.
ribosome 31-jul-06 2j00
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 1 of 4). this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule i.
Author: m. selmer, c. m. dunham, f. v. murphy, a. weixlbaumer, s. petry, j. r. weir, a. c. kelley, v. ramakrishnan
Keywords: trna, paromomycin, mrna, translation
- 2j01.pdb.
ribosome 31-jul-06 2j01
Title: structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 2 of 4). this file contains the 50s subunit from molecule i.
Author: m. selmer, c. m. dunham, f. v. murphy, a. weixlbaumer, s. petry, j. r. weir, a. c. kelley, v. ramakrishnan
Keywords: trna, paromomycin, mrna, translation
- 2j02.pdb.
ribosome 31-jul-06 2j02
Mg Zn
Title: structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 3 of 4) this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule ii.
Author: m. selmer, c. m. dunham, f. v. murphy, a. weixlbaumer, s. petry, j. r. weir, a. c. kelley, v. ramakrishnan
Keywords: trna, paromomycin, mrna, translation
- 2j03.pdb.
ribosome 31-jul-06 2j03
Title: structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 4 of 4). this file contains the 50s subunit from molecule ii.
Author: m. selmer, c. m. dunham, f. v. murphy, a. weixlbaumer, s. petry, j. r. weir, a. c. kelley, v. ramakrishnan
Keywords: trna, paromomycin, mrna, translation
- 2j14.pdb.
transcription 08-aug-06 2j14
Cl
Title: 3,4,5-trisubstituted isoxazoles as novel ppardelta agonists: part2
Author: r. epple, m. azimioara, r. russo, y. xie, x. wang, c. cow, j. wityak, d. karanewsky, b. bursulaya, a. kreusch, t. tuntland, a. gerken, m. iskandar, e. saez, h. m. seidel, s. s. tian
Keywords: transcription regulation, ppar, zinc, receptor, activator, fatty acids, nuclear protein, alternative splicing, zinc-finger, dna-binding, transcription, metal-binding
- 2j1s.pdb.
carbohydrate-binding protein 15-aug-06 2j1s
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with fucose
Author: a. b. boraston, d. wang, r. d. burke
- 2j1t.pdb.
carbohydrate-binding protein 15-aug-06 2j1t
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the lewis y antigen
Author: a. b. boraston, d. wang, r. d. burke
- 2j1u.pdb.
carbohydrate-binding protein 15-aug-06 2j1u
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the blood group a-tetrasaccharide
Author: a. b. boraston, d. wang, r. d. burke
Keywords: carbohydrate-binding protein
- 2j1v.pdb.
carbohydrate-binding protein 15-aug-06 2j1v
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the blood group h-trisaccharide
Author: a. b. boraston, d. wang, r. d. burke
- 2j22.pdb.
carbohydrate-binding protein 15-aug-06 2j22
Ca
Title: structure of a streptococcus pneumoniae fucose binding module, spx-3
Author: a. b. boraston, d. wang, r. d. burke
- 2j2s.pdb.
transcription regulation 17-aug-06 2j2s
Zn
(NMR, 20 structures)
Title: solution structure of the nonmethyl-cpg-binding cxxc domain of the leukaemia-associated mll histone methyltransferase
Author: m. d. allen, c. g. grummitt, c. hilcenko, s. young-min, l. m. tonkin, c. m. johnson, m. bycroft, a. j. warren
Keywords: proto-oncogene, nuclear protein, phosphorylation, cpg dinucleotide, alternative splicing
- 2j2u.pdb.
hydrolase 17-aug-06 2j2u
Cl
Title: crystal structure of a human factor xa inhibitor complex
Author: s. senger, m. a. convery, c. chan, n. s. watson
Keywords: serine protease, egf-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation, gamma-carboxyglutamic acid, calcium, zymogen, complex, protease, hydrolase
- 2j34.pdb.
hydrolase 18-aug-06 2j34
Cl Ca
Title: crystal structure of a human factor xa inhibitor complex
Author: s. senger, m. a. convery, c. chan, n. s. watson
Keywords: serine protease, egf-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation, gamma-carboxyglutamic acid,calcium, zymogen, complex, protease, hydrolase
- 2j38.pdb.
hydrolase 18-aug-06 2j38
Cl Ca
Title: crystal structure of a human factor xa inhibitor complex
Author: s. senger, m. a. convery, c. chan, n. s. watson
Keywords: serine protease, egf-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation, gamma-carboxyglutamic acid, calcium, zymogen, complex, protease, hydrolase
- 2j4i.pdb.
hydrolase 31-aug-06 2j4i
Cl Ca
Title: crystal structure of a human factor xa inhibitor complex
Author: r. j. young, m. campbell, a. d. borthwick, d. brown, c. chan, m. a. convery, m. c. crowe, s. dayal, h. diallo, h. a. kelly, n. paul king, s. kleanthous, c. l. kurtis, a. m. mason, j. e. mordaunt, c. patel, a. j. pateman, s. senger, g. p. shah, p. w. smith, n. s. watson, h. e. weston, p. zhou
Keywords: calcium, egf-like domain, gamma- carboxyglutamic acid, glycoprotein, hydrolase, hydroxylation, polymorphism, protease, serine protease, zymogen, complex
- 2j66.pdb.
lyase 26-sep-06 2j66
Title: structural characterisation of btrk decarboxylase from butirosin biosynthesis
Author: b. popovic, y. li, d. y. chirgadze, t. l. blundell, j. b. spencer
Keywords: decarboxylase, ahba biosynthesis, lyase
- 2j67.pdb.
receptor 26-sep-06 2j67
Title: the tir domain of human toll-like receptor 10 (tlr10)
Author: p. stenmark, d. ogg, c. arrowsmith, h. berglund, r. busam, r. collins, a. edwards, u. b. ericsson, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, l. holmberg schiavone, m. hogbom, i. johansson, t. karlberg, t. kotenyova, a. magnusdottir, m. e. nilsson, p. nilsson-ehle, t. nyman, c. persson, j. sagemark, m. sundstrom, j. uppenberg, a. g. thorsell, s. van den berg, k. wallden, j. weigelt, m. welin, p. nordlund
Keywords: il-1, toll, tlr10, membrane, receptor, inflammatory response, toll-like receptor 10, innate immunity, immune response, leucine-rich repeat, polymorphism, glycoprotein, transmembrane
- 2j6a.pdb.
transferase 27-sep-06 2j6a
Zn
Title: crystal structure of s. cerevisiae ynr046w, a zinc finger protein from the erf1 methyltransferase complex.
Author: v. heurgue-hamard, m. graille, n. scrima, n. ulryck, s. champ, h. van tilbeurgh, r. h. buckingham
Keywords: methyltransferase, transferase, erf1, nuclear protein, protein methylation
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