Recent PDB releases or updates: week of 15 September 2006
- 1odc.pdb.
hydrolase 15-feb-03 1odc
Title: structure of acetylcholinesterase (e.c. 3.1.1.7) complexed with n-4'-quinolyl-n'-9"-(1",2",3",4" -tetrahydroacridinyl)-1,8-diaminooctane at 2.2a resolution
Author: d. m. wong, h. m. greenblatt, p. r. carlier, y. -f. han, y. -p. pang, i. silman, j. l. sussman
Keywords: nerve, muscle, signal, gpi-anchor neurotransmitter degradation, glycoprotein
- 1ut6.pdb.
hydrolase 04-dec-03 1ut6
Title: structure of acetylcholinesterase (e.c. 3.1.1.7) complexed with n-9-(1',2',3',4'-tetrahydroacridinyl)-1,8- diaminooctane at 2.4 angstroms resolution.
Author: b. brumshtein, d. m. wong, h. m. greenblatt, p. r. carlier, y. -p. pang, i. silman, j. l. sussman
Keywords: muscle, signal, gpi-anchor neurotransmitter degradation, glycoprotein
- 1uzb.pdb.
oxidoreductase 09-mar-04 1uzb
Title: 1-pyrroline-5-carboxylate dehydrogenase
Author: t. h. tahirov, e. inagaki
Keywords: 1-pyrroline-5-carboxylate, oxidoreductase
- 1wzz.pdb.
hydrolase 10-mar-05 1wzz
Se
Title: structure of endo-beta-1,4-glucanase cmcax from acetobacter xylinum
Author: y. yasutake, s. kawano, k. tajima, m. yao, y. satoh, m. munekata, i. tanaka
Keywords: (alpha/alpha)6 barrel, structural genomics, structural genomics consortium for research on gene expression system, sgcges
- 1xqa.pdb.
structural genomics, unknown function 11-oct-04 1xqa
Mg Se
Title: structure of a possible glyoxalase from bacillus cereus
Author: m. e. cuff, h. li, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: glyoxalase/bleomycin resistance, structural genomics, midwest center for structural genomics, mcsg, protein structure initiative, psi
- 1z9p.pdb.
oxidoreductase 04-apr-05 1z9p
Cu Zn
Title: x-ray structure of a cu-zn superoxide dismutase from haemophilus ducreyi
Author: k. djinovic carugo, i. toeroe
Keywords: sod, metalloenzymes
- 1zuu.pdb.
unknown function 01-jun-05 1zuu
Mg
Title: crystal structure of the yeast bzz1 first sh3 domain at 0.97-a resolution
Author: p. kursula, i. kursula, f. lehmann, p. zou, y. h. song, m. wilmanns
- 2a28.pdb.
signaling protein 22-jun-05 2a28
Title: atomic-resolution crystal structure of the second sh3 domain of yeast bzz1 determined from a pseudomerohedrally twinned crystal
Author: p. kursula, i. kursula, f. lehmann, p. zou, y. h. song, m. wilmanns
- 2aco.pdb.
lipid transport, membrane protein 19-jul-05 2aco
Title: xray structure of blc dimer in complex with vaccenic acid
Author: v. campanacci, r. e. bishop, l. reese, s. blangy, m. tegoni, c. cambillau
Keywords: fatty acid, e.coli
- 2aih.pdb.
hydrolase 29-jul-05 2aih
Cl
(NMR, 20 structures)
Title: 1h-nmr solution structure of a trypsin/chymotrypsin bowman- birk inhibitor from lens culinaris.
Author: e. m. ragg, v. galbusera, a. scarafoni, a. negri, g. tedeschi, a. consonni, f. sessa, m. duranti
Keywords: two-strands beta-sheet
- 2aro.pdb.
structural protein 20-aug-05 2aro
Cl
Title: crystal structure of the native histone octamer to 2.1 angstrom resolution, crystalised in the presence of s- nitrosoglutathione
Author: c. m. wood, s. sodngam, j. m. nicholson, s. j. lambert, c. d. reynolds, j. p. baldwin
Keywords: oxidation, allostery, circular dichroism
- 2arw.pdb.
cytokine 22-aug-05 2arw
(NMR, minimized average structure)
Title: the solution structure of the membrane proximal cytokine receptor domain of the human interleukin-6 receptor
Author: o. hecht, a. j. dingley, a. schwantner, s. ozbek, s. rose-john, j. grotzinger
- 2ayp.pdb.
transferase 07-sep-05 2ayp
Title: crystal structure of chk1 with an indol inhibitor
Author: n. -h. lin, p. xia, p. kovar, z. chen, h. zhang, s. h. rosenberg, h. l. sham
- 2b1k.pdb.
oxidoreductase 15-sep-05 2b1k
Title: crystal structure of e. coli ccmg protein
Author: n. ouyang, y. -g. gao, h. -y. hu, z. -x. xia
Keywords: n-terminal beta-sheet, fingerprint rigion
- 2b1l.pdb.
oxidoreductase 16-sep-05 2b1l
Title: crystal structure of n-terminal 57 residue deletion mutant of e. coli ccmg protein(residues 58-185)
Author: n. ouyang, y. -g. gao, h. -y. hu, z. -x. xia
Keywords: folding topology change
- 2b1q.pdb.
hydrolase 16-sep-05 2b1q
Mg
Title: x-ray structure of the sucrose-phosphatase (spp) from synechocystis sp.pcc6803 in complex with trehalose
Author: s. fieulaine, j. e. lunn, j. -l. ferrer
Keywords: had superfamily, trehalose, cyanobacteria
- 2b1r.pdb.
hydrolase 16-sep-05 2b1r
Mg
Title: x-ray structure of the sucrose-phosphatase (spp) from synechocystis sp.pcc6803 in complex with cellobiose
Author: s. fieulaine, j. e. lunn, j. -l. ferrer
Keywords: had superfamily, cellobiose, cyanobacteria
- 2b7h.pdb.
oxygen storage/transport 04-oct-05 2b7h
Fe
Title: hemoglobin from cerdocyon thous, a canidae from brazil, at 2.2 angstroms resolution
Author: g. f. esteves, v. c. silva, c. bloch jr. , f. j. medrano, j. a. r. g. barbosa, s. m. freitas
Keywords: aquomet, x-ray crystallography, cerdocyon thous
- 2bhp.pdb.
oxidoreductase 16-jan-05 2bhp
Na
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nad.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bhq.pdb.
oxidoreductase 16-jan-05 2bhq
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound product glutamate.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bja.pdb.
oxidoreductase 01-feb-05 2bja
Cl
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nadh
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bjk.pdb.
oxidoreductase 04-feb-05 2bjk
Cl
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nad and citrate.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bum.pdb.
oxidoreductase 14-jun-05 2bum
Fe
Title: crystal structure of wild-type protocatechuate 3,4- dioxygenase from acinetobacter sp. adp1
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure
- 2buq.pdb.
oxidoreductase 17-jun-05 2buq
Fe
Title: crystal structure of wild-type protocatechuate 3,4- dioxygenase from acinetobacter sp. adp1 in complex with catechol
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure
- 2bur.pdb.
oxidoreductase 17-jun-05 2bur
Fe
Title: crystal structure of wild-type protocatechuate 3,4- dioxygenase from acinetobacter sp. adp1 in complex with 4- hydroxybenzoate
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure
- 2but.pdb.
oxidoreductase 17-jun-05 2but
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r457s - apo
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, aromatic hydrocarbons catabolism, iron, oxidoreductase, metal- binding
- 2buv.pdb.
oxidoreductase 17-jun-05 2buv
Fe
Title: crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r457s in complex with protocatechuate
Author: m. w. vetting, m. p. valley, d. a. d'argenio, l. n. ornston, j. d. lipscomb, d. h. ohlendorf
Keywords: aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure
- 2bvj.pdb.
oxidoreductase 23-jun-05 2bvj
Fe
Title: ligand-free structure of cytochrome p450 pikc (cyp107l1)
Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
Keywords: pikc, cyp107l1, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase
- 2c6h.pdb.
oxidoreductase 09-nov-05 2c6h
Fe
Title: crystal structure of yc-17-bound cytochrome p450 pikc (cyp107l1)
Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
Keywords: pikc, cyp107l1, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase antibiotic biosynthesis
- 2c6s.pdb.
virus/viral protein 10-nov-05 2c6s
Title: human adenovirus penton base 2 12 chimera
Author: c. zubieta, l. blanchoin, s. cusack
Keywords: capsid,penton,dodecahedra,fiber,viral protein
- 2c7x.pdb.
oxidoreductase 29-nov-05 2c7x
Fe
Title: crystal structure of narbomycin-bound cytochrome p450 pikc (cyp107l1)
Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
Keywords: pikc, narbomycin, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase
- 2ceo.pdb.
transport 08-feb-06 2ceo
I
Title: thyroxine-binding globulin complex with thyroxine
Author: a. zhou, z. wei, r. j. read, r. w. carrell
Keywords: serpin, hormone transport, thyroxine, disease mutation, glycoprotein, polymorphism, transport
- 2ckm.pdb.
hydrolase 20-apr-06 2ckm
Title: torpedo californica acetylcholinesterase complexed with alkylene-linked bis-tacrine dimer (7 carbon linker)
Author: b. brumshtein, e. h. rydberg, h. m. greenblatt, d. m. wong, d. shaya, l. d. williams, p. r. carlier, y. p. pang, i. silman, j. l. sussman
Keywords: serine hydrolase, alzheimer's disease, nerve, muscle, synapse, membrane, hydrolase, gpi-anchor, lipoprotein, glycoprotein, cholinesterase, alternative splicing, neurotransmitter degradation
- 2cmf.pdb.
hydrolase 08-may-06 2cmf
Title: torpedo californica acetylcholinesterase complexed with alkylene-linked bis-tacrine dimer (5 carbon linker)
Author: e. h. rydberg, b. brumshtein, h. m. greenblatt, d. m. wong, y. p. pang, i. silman, j. l. sussman
Keywords: serine hydrolase, alzheimer's disease, nerve, muscle, synapse, membrane, hydrolase, gpi-anchor, lipoprotein, glycoprotein, cholinesterase, alternative splicing, neurotransmitter degradation
- 2d1j.pdb.
hydrolase 24-aug-05 2d1j
Cl Ca
Title: factor xa in complex with the inhibitor 2-[[4-[(5- chloroindol-2-yl)sulfonyl]piperazin-1-yl] carbonyl]thieno[3,2-b]pyridine n-oxide
Author: m. suzuki
Keywords: hydrolase, serine protease, plasma, blood coagulation factor, protein inhibitor complex, calcium- binding
- 2d1k.pdb.
structural protein 26-aug-05 2d1k
Mg Ca
Title: ternary complex of the wh2 domain of mim with actin-dnase i
Author: d. chereau, f. kerff, r. dominguez
Keywords: wip, wh2, actin, dnase i
- 2d1l.pdb.
protein binding 27-aug-05 2d1l
Se
Title: structure of f-actin binding domain imd of mim (missing in metastasis)
Author: s. h. lee, f. kerff, d. chereau, f. ferron, r. dominguez
Keywords: actin binding, imd
- 2d1v.pdb.
transcription 01-sep-05 2d1v
Title: crystal structure of dna-binding domain of bacillus subtilis yycf
Author: t. okajima, a. okada, t. watanabe, k. yamamoto, k. tanizawa, r. utsumi
Keywords: dna-binding domain, two-component system, response regulator
- 2d2v.pdb.
hydrolase 16-sep-05 2d2v
Mg
Title: x-ray structure of the sucrose-phosphatase (spp) from synechocystis sp.pcc6803 in complex with maltose
Author: s. fieulaine, j. e. lunn, j. -l. ferrer
Keywords: had superfamily, maltose, cyanobacteria
- 2d3e.pdb.
contractile protein 27-sep-05 2d3e
Title: crystal structure of the c-terminal fragment of rabbit skeletal alpha-tropomyosin
Author: y. nitanai, k. maeda, n. oda, s. minakata, y. maeda
Keywords: alanine cluster, bendable region
- 2dgb.pdb.
structural genomics, unknown function 10-mar-06 2dgb
Se
Title: structure of thermus thermophilus purs in the p21 form
Author: h. yanai, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dj5.pdb.
lyase 31-mar-06 2dj5
Title: crystal structure of the vitamin b12 biosynthetic cobaltochelatase, cbixs, from archaeoglobus fulgidus
Author: j. yin, m. m. cherney, m. n. g. james
Keywords: parallel beta sheet
- 2djw.pdb.
unknown function 05-apr-06 2djw
Zn
Title: crystal structure of ttha0845 from thermus thermophilus hb8
Author: n. okazaki, n. nakano, a. shinkai, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: thermus thermophilus hb8, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dsp.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsp
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2dsq.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsq
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2dsr.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsr
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2dxr.pdb.
metal binding protein 30-aug-06 2dxr
Zn Fe
Title: crystal structure of the complex formed between c-terminal half of bovine lactoferrin and sorbitol at 2.85 a resolution
Author: r. mir, r. prem kumar, m. sinha, n. singh, s. sharma, a. bhushan, p. kaur, t. p. singh
Keywords: lactoferrin, sorbitol, complex
- 2eta.pdb.
transport protein 27-oct-05 2eta
Title: crystal structure of the ankyrin repeat domain of the trpv2
Author: x. jin, r. gaudet
Keywords: ankyrin repeat domain
- 2etb.pdb.
transport protein 27-oct-05 2etb
Title: crystal structure of the ankyrin repeat domain of trpv2
Author: x. jin, r. gaudet
Keywords: ankyrin repeat domain
- 2etc.pdb.
transport protein 27-oct-05 2etc
Title: crystal structure of the ankyrin repeat domain of trpv2
Author: x. jin, r. gaudet
Keywords: ankyrin repeat domain
- 2evy.pdb.
ribonucleic acid 01-nov-05 2evy
(NMR, 18 structures)
Title: gnya tetranucleotide loops found in poliovirus oril by in vivo selex (un)expectedly form a ynmg-like structure
Author: w. j. g. melchers, j. zoll, m. tessari, d. v. bakhmutov, a. p. gmyl, v. i. agol, h. a. heus
Keywords: 5'ntr, cloverleaf, gnya tetranucleoitde loop
- 2ews.pdb.
transferase 06-nov-05 2ews
Mg
Title: crystal structure of s.aureus pantothenate kinase
Author: b. s. hong, h. w. park, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2eyi.pdb.
structural protein 09-nov-05 2eyi
Title: crystal structure of the actin-binding domain of human alpha-actinin 1 at 1.7 angstrom resolution
Author: e. borrego-diaz, f. kerff, s. h. lee, f. ferron, y. li, r. dominguez
Keywords: ch domain, structural protein, actin-binding, actin-crosslinking, actin-bundling
- 2eyn.pdb.
structural protein 09-nov-05 2eyn
Title: crystal structure of the actin-binding domain of human alpha-actinin 1 at 1.8 angstrom resolution
Author: e. borrego-diaz, f. kerff, s. h. lee, f. ferron, y. li, r. dominguez
Keywords: ch domain, structural protein, actin-binding, actin-crosslinking, actin-bundling
- 2f1n.pdb.
toxin 14-nov-05 2f1n
Title: structure of cdtb, the biologically active subunit of cytolethal distending toxin
Author: j. s. hontz, m. d. yoder, l. a. dreyfus
Keywords: cdt, e.coli, toxin, dnase i, microbatch
- 2f8v.pdb.
contractile protein/contractile protein 04-dec-05 2f8v
Title: structure of full length telethonin in complex with the n- terminus of titin
Author: n. pinotsis, m. petoukhov, s. lange, d. svergun, p. zou, m. gautel, m. wilmanns
Keywords: titin, z1z2, telethonin
- 2fuj.pdb.
hydrolase 27-jan-06 2fuj
Title: a putative acyl-coa thioesterase from xanthomonas campestris (xc229)
Author: k. h. chin, c. c. chou, a. h. wang, s. h. chou
Keywords: structural genomics, x-ray diffraction, conserved hypothetical protein, hot dog domain, acyl-coa thioesterase
- 2fyn.pdb.
oxidoreductase 08-feb-06 2fyn
Fe
Title: crystal structure analysis of the double mutant rhodobacter sphaeroides bc1 complex
Author: l. esser, d. xia
Keywords: functional dimer
- 2fyu.pdb.
oxidoreductase 08-feb-06 2fyu
F Fe
Title: crystal structure of bovine heart mitochondrial bc1 with jg144 inhibitor
Author: d. xia, l. esser
Keywords: 11 protein complex
- 2fz6.pdb.
surface active protein 09-feb-06 2fz6
Zn
Title: crystal structure of hydrophobin hfbi
Author: j. m. hakanpaa, j. rouvinen
Keywords: beta barrel, pseudo-merohedral twinning, amphiphile
- 2g1i.pdb.
lyase 14-feb-06 2g1i
Mg
Title: crystal structure of pyruvate decarboxylase from kluyveromyces lactis
Author: s. kutter, g. wille, s. relle, m. s. weiss, g. hubner, s. konig
Keywords: asymmetric active sites, substrate activation
- 2g60.pdb.
immune system 23-feb-06 2g60
Title: structure of anti-flag m2 fab domain
Author: t. p. roosild
Keywords: fab domain, anti-flag
- 2g67.pdb.
oxidoreductase 24-feb-06 2g67
Title: e. coli pyruvate dehydrogenase e1 component (apoenzyme)
Author: w. furey, k. chandrasekhar, p. arjunan
Keywords: apoenzyme, homodimer
- 2g8n.pdb.
transferase 02-mar-06 2g8n
Cl
Title: structure of hpnmt with inhibitor 3-hydroxymethyl-7-(n-4- chlorophenylaminosulfonyl)-thiq and adohcy
Author: n. drinkwater, c. l. gee, j. l. martin
- 2g99.pdb.
structural protein/dna binding protein 06-mar-06 2g99
Title: structural basis for the specific recognition of methylated histone h3 lysine 4 by the wd-40 protein wdr5
Author: j. chai, z. han, h. wang, y. shen
- 2g9a.pdb.
structural protein/dna binding protein 06-mar-06 2g9a
Title: structural basis for the specific recognition of methylated histone h3 lysine 4 by the wd-40 protein wdr5
Author: j. chai, z. han, h. wang, y. shen
- 2g9p.pdb.
antimicrobial protein 07-mar-06 2g9p
(NMR, 20 structures)
Title: nmr structure of a novel antimicrobial peptide, latarcin 2a, from spider (lachesana tarabaevi) venom
Author: p. v. dubovskii, p. e. volynsky, a. a. polyansky, v. v. chupin, r. g. efremov, a. s. arseniev
- 2ghu.pdb.
hydrolase 27-mar-06 2ghu
Title: crystal structure of falcipain-2 from plasmodium falciparum
Author: t. hogg, k. nagarajan, c. l. schmidt, r. hilgenfeld
Keywords: l-domain, r-domain, alpha helix, random coil, twisted antiparallel beta-sheet
- 2gif.pdb.
membrane protein/transport protein 28-mar-06 2gif
Title: asymmetric structure of trimeric acrb from escherichia coli
Author: m. a. seeger, a. schiefner, t. eicher, f. verrey, k. diederichs, k. m. pos
Keywords: secondary transport, rnd, antibiotic resistance, drug-efflux pump, alternating site mechanism
- 2gjc.pdb.
biosynthetic protein 30-mar-06 2gjc
Title: crystal structure of thiazole synthase in saccharomyces cerevisiae at 1.82 a resolution
Author: c. t. jurgenson, a. chatterjee, t. p. begley, s. e. ealick
Keywords: thiazole synthase, mitochondria dna repair
- 2gjw.pdb.
hydrolase/rna 31-mar-06 2gjw
Title: rna recognition and cleavage by an splicing endonuclease
Author: s. xue, k. calvin, h. li
Keywords: splicing endonuclease af
- 2gnf.pdb.
transferase/transferase inhibitor 10-apr-06 2gnf
Title: protein kinase a fivefold mutant model of rho-kinase with y- 27632
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: rho-kinase, surrogate, y-27632
- 2gng.pdb.
transferase/transferase inhibitor 10-apr-06 2gng
Title: protein kinase a fivefold mutant model of rho-kinase
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: mutant, rho-kinase, surrogate, inhibitor
- 2gnh.pdb.
transferase/transferase inhibitor 10-apr-06 2gnh
Title: pka five fold mutant model of rho-kinase with h1152p
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: surrogate, rho-kinase, h1152p, inhibitor
- 2gni.pdb.
transferase/transferase inhibitor 10-apr-06 2gni
Title: pka fivefold mutant model of rho-kinase with inhibitor fasudil (ha1077)
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: mutant, rho-kinase, surrogate, inhibitor, fasudil, ha1077
- 2gnj.pdb.
transferase/transferase inhibitor 10-apr-06 2gnj
Title: pka three fold mutant model of rho-kinase with y-27632
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: surrogate, rho-kinase, h1152p, inhibitor
- 2gnl.pdb.
transferase/transferase inhibitor 10-apr-06 2gnl
Title: pka threefold mutant model of rho-kinase with inhibitor h- 1152p
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: mutant, rho-kinase, surrogate, inhibitor, h-1152p
- 2gnq.pdb.
transcription 10-apr-06 2gnq
Cl
Title: structure of wdr5
Author: j. min, a. schuetz, a. allali-hassani, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2go0.pdb.
protein binding 12-apr-06 2go0
(NMR, 20 structures)
Title: nmr solution structure of human pancreatitis-associated protein
Author: c. p. chen, m. r. ho, y. c. lou
Keywords: fibril
- 2gp9.pdb.
hydrolase 17-apr-06 2gp9
Title: crystal structure of the slow form of thrombin in a self- inhibited conformation
Author: a. pineda, z. chen, f. s. mathews, e. di cera
- 2gvm.pdb.
surface active protein 03-may-06 2gvm
Zn
Title: crystal structure of hydrophobin hfbi with detergent
Author: j. m. hakanpaa, j. rouvinen
Keywords: amphiphile, surfactant, high solvent content
- 2gvs.pdb.
lipid binding protein 03-may-06 2gvs
(NMR, 20 structures)
Title: nmr solution structure of cspsg4
Author: s. tomaselli, o. crescenzi, d. sanfelice, e. ab, t. tancredi, d. picone
- 2h02.pdb.
hydrolase 13-may-06 2h02
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel, j. l. gray, k. g. peters, m. b. maier, k. d. amarasinghe, c. m. clark, r. nichols
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2h03.pdb.
hydrolase 13-may-06 2h03
Cl Mg
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel, j. l. gray, k. g. peters, m. b. maier, k. d. amarasinghe, c. m. clark, r. nichols
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2h04.pdb.
hydrolase 13-may-06 2h04
Title: structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel, j. l. gray, k. g. peters, m. b. maier, k. d. amarasinghe, c. m. clark, r. nichols
Keywords: wpd-loop, sulfamic acid, phosphatase, inhibitor, drug design
- 2h1l.pdb.
virus/viral protein 16-may-06 2h1l
Zn
Title: the structure of the oncoprotein sv40 large t antigen and p53 tumor suppressor complex
Author: w. lilyestrom
- 2h3s.pdb.
de novo protein 23-may-06 2h3s
(NMR, 20 structures)
Title: cis-azobenzene-avian pancreatic polypeptide bound to dpc micelles
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: photoswitch
- 2h3t.pdb.
de novo protein 23-may-06 2h3t
(NMR, 20 structures)
Title: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc micelles
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: pp folding
- 2h4b.pdb.
de novo protein 24-may-06 2h4b
(NMR, 20 structures)
Title: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic polypeptide
Author: s. jurt, a. aemissegger, p. guentert, o. zerbe, d. hilvert
Keywords: folding, nmr
- 2h8p.pdb.
immune system 07-jun-06 2h8p
K
Title: structure of a k channel with an amide to ester substitution in the selectivity filter
Author: f. i. valiyaveetil, r. mackinnon, t. w. muir
Keywords: semi-synthetic, ester
- 2h9l.pdb.
structural genomics, gene regulation 10-jun-06 2h9l
Title: wdr5delta23
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9m.pdb.
structural genomics, gene regulation 10-jun-06 2h9m
Title: wdr5 in complex with unmodified h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9n.pdb.
structural genomics, gene regulation 10-jun-06 2h9n
Title: wdr5 in complex with monomethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9o.pdb.
structural genomics, gene regulation 10-jun-06 2h9o
Title: wdr5 in complex with dimethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2h9p.pdb.
structural genomics, gene regulation 10-jun-06 2h9p
Title: wdr5 in complex with trimethylated h3k4 peptide
Author: j. r. min, a. schuetz, a. allali-hassani, f. martin, p. loppnau, m. vedadi, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2hem.pdb.
ribonucleic acid 21-jun-06 2hem
(NMR, 9 structures)
Title: nmr structure and mg2+ binding of an rna segment that underlies the l7/l12 stalk in the e.coli 50s ribosomal subunit.
Author: q. zhao, u. nagaswamy, h. lee, y. xia, x. gao, g. fox
Keywords: backbone dynamics, cis watson-crick g a pair, g a mismatch, helix 42, l7/l12 stalk, mg2+ binding, tandem (g a)2
- 2her.pdb.
transferase 21-jun-06 2her
Mg
Title: cryptosporidium parvum farnesyl diphosphate synthase
Author: m. chruszcz, j. d. artz, h. zheng, a. dong, j. dunford, j. lew, y. zhao, i. kozieradski, k. l. kavanaugh, u. opperman, m. sundstrom, j. weigelt, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, w. minor, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2hfe.pdb.
immune system 23-jun-06 2hfe
Rb
Title: rb+ complex of a k channel with an amide to ester substitution in the selectivity filter
Author: f. i. valiyaveetil, r. mackinnon, t. w. muir
Keywords: semi-synthetic, ester
- 2hg5.pdb.
hydrolase 26-jun-06 2hg5
Cs
Title: cs+ complex of a k channel with an amide to ester substitution in the selectivity filter
Author: f. i. valiyaveetil, r. mackinnon, t. w. muir
Keywords: semi-synthetic, ester
- 2hi2.pdb.
cell adhesion 28-jun-06 2hi2
Title: crystal structure of native neisseria gonorrhoeae type iv pilin at 2.3 angstroms resolution
Author: l. craig, a. s. arvai, j. a. tainer
Keywords: fiber-forming protein, membrane protein, dna binding protein, contractile protein
- 2hil.pdb.
cell adhesion 29-jun-06 2hil
(cryo-electron microscopy)
Title: structure of the neisseria gonorrhoeae type iv pilus filament from x-ray crystallography and electron cryomicroscopy
Author: l. craig, n. volkmann, e. h. egelman, j. a. tainer
Keywords: virulence factors, dna binding protein, natural transformation, electron cryomicroscopy, 3d image reconstruction, antigenic variation
- 2hiq.pdb.
structural genomics, unknown function 29-jun-06 2hiq
Title: crystal structure of jw1657 from escherichia coli
Author: l. q. chen, l. r. chen, z. -j. liu, w. temple, d. lee, s. -h. chang, j. p. rose, a. ebihara, b. -c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
- 2hkn.pdb.
structural protein 05-jul-06 2hkn
Title: crystal structure of the cap-gly domain of human dynactin-1 (p150-glued)
Author: s. honnappa, f. k. winkler, m. o. steinmetz
Keywords: cytoskeleton associated protein, p150- glued, strand swap, eb1 and clip-170 binding protein
- 2hkq.pdb.
structural protein 05-jul-06 2hkq
Title: crystal structure of the c-terminal domain of human eb1 in complex with the cap-gly domain of human dynactin-1 (p150- glued)
Author: s. honnappa, f. k. winkler, m. o. steinmetz
Keywords: dynactin, cytoskeleton associated protein, p150glued, eb1, +tip protein complex structure, coiled coil
- 2hl3.pdb.
structural protein 06-jul-06 2hl3
Title: crystal structure of the a49m mutant cap-gly domain of human dynactin-1 (p150-glued) in complex with human eb1 c- terminal hexapeptide
Author: s. honnappa, f. k. winkler, m. o. steinmetz
Keywords: dynactin,cytoskeleton associated protein, p150glued, eb1, +tip protein complex structure, eey/f-coo- sequence motif, clip-170, alpha-tubulin
- 2hl5.pdb.
structural protein 06-jul-06 2hl5
Cl
Title: crystal structure of the c-terminal domain of human eb1 in complex with the a49m mutant cap-gly domain of human dynactin-1 (p150-glued)
Author: s. honnappa, f. k. winkler, m. o. steinmetz
Keywords: dynactin, cytoskeleton associated protein, p150glued, eb1, +tip protein complex structure, coiled coil
- 2ho3.pdb.
oxidoreductase 13-jul-06 2ho3
Title: crystal structure of oxidoreductase, gfo/idh/moca family from streptococcus pneumoniae
Author: c. chang, c. hatzos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: gfo/idh/moca family, streptococcus pneumoniae, reductive methylation, structural genomics, psi- 2, protein structure initiative, midwest center for structural genomics, mcsg
- 2ho5.pdb.
oxidoreductase 13-jul-06 2ho5
Se
Title: crystal structure of oxidoreductase, gfo/idh/moca family from streptococcus pneumoniae
Author: c. chang, c. hatzos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: gfo/idh/moca family, streptococcus pneumoniae, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hp0.pdb.
isomerase 17-jul-06 2hp0
U Se
Title: crystal structure of iminodisuccinate epimerase
Author: b. lohkamp, b. bauerle, p. g. rieger, g. schneider
Keywords: 6 helix bundle, chorismate mutase like
- 2hp3.pdb.
isomerase 17-jul-06 2hp3
U
Title: crystal structure of iminodisuccinate epimerase
Author: b. lohkamp, b. bauerle, p. g. rieger, g. schneider
Keywords: 6 helix bundle, chorismate mutase like
- 2hpv.pdb.
oxidoreductase 17-jul-06 2hpv
Se
Title: crystal structure of fmn-dependent azoreductase from enterococcus faecalis
Author: z. j. liu, l. chen, h. chen, j. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: enterococcus faecalis, structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
- 2hpw.pdb.
luminescent protein 17-jul-06 2hpw
Title: green fluorescent protein from clytia gregaria
Author: g. stepanyuk, z. j. liu, s. e. vysotski, j. lee, j. p. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: gfp, structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
- 2hq1.pdb.
oxidoreductase 18-jul-06 2hq1
Title: crystal structure of orf 1438 a putative glucose/ribitol dehydrogenase from clostridium thermocellum
Author: southeast collaboratory for structural genomics (secsg), y. li, n. shaw, h. xu, c. cheng, l. chen, z. j. liu, j. p. rose, b. c. wang
Keywords: cth-1438, structural genomics, southeast collaboratory for structural genomics, secsg, psi, protein structure initiative
- 2hq8.pdb.
structural genomics, unknown function 18-jul-06 2hq8
Ca
Title: crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo form
Author: g. stepanyuk, z. j. liu, e. s. vysotski, j. lee, j. p. rose, b. c. wang, southeast collaboratory for structural genomics (secsg)
Keywords: renilla muelleri, psi, structural genomics, southeast collaboratory for structural genomics, protein structure initiative, secsg
- 2hrt.pdb.
membrane protein, transport protein 20-jul-06 2hrt
Title: asymmetric structure of trimeric acrb from escherichia coli
Author: m. a. seeger, a. schiefner, t. eicher, f. verrey, k. diederichs, k. m. pos
Keywords: multidrug efflux pump, rnd, antibiotic resistance, acra, tolc, membrane protein, proton-coupled exchanger
- 2hs6.pdb.
oxidoreductase 21-jul-06 2hs6
Title: crystal structure of the e291k mutant of 12- oxophytodienoate reductase 3 (opr3) from tomato
Author: c. breithaupt, t. clausen, r. huber
Keywords: flavoprotein, jasmonate biosynthesis
- 2hs8.pdb.
oxidoreductase 21-jul-06 2hs8
Title: crystal structure of the y364f mutant of 12- oxophytodienoate reductase 3 from tomato
Author: c. breithaupt, t. clausen, r. huber
Keywords: flavoprotein, jasmonate biosynthesis
- 2hsa.pdb.
oxidoreductase 21-jul-06 2hsa
Cl
Title: crystal structure of 12-oxophytodienoate reductase 3 (opr3) from tomato
Author: c. breithaupt, t. clausen, r. huber
Keywords: flavoprotein, jasmonate biosynthesis
- 2hva.pdb.
ligand binding protein 28-jul-06 2hva
(NMR, 21 structures)
Title: solution structure of the haem-binding protein p22hbp
Author: d. a. gell, j. p. mackay, b. j. westman, c. k. liew, d. gorman
Keywords: beta-beta-alpha-beta-beta repeat, hydrophobic-ligand binding domain
- 2hvy.pdb.
isomerase/biosynthetic protein/rna 31-jul-06 2hvy
Zn
Title: crystal structure of an h/aca box rnp from pyrococcus furiosus
Author: k. ye
Keywords: rnp, pseudouridine synthase, guide rna
- 2hyn.pdb.
membrane protein/signaling protein 07-aug-06 2hyn
(NMR, 184 structures)
Title: complete ensemble of nmr structures of unphosphorylated human phospholamban pentamer
Author: s. potluri, a. k. yan, j. j. chou, b. r. donald, c. bailey-kellogg
Keywords: pentamer, protein complex, leu/ile zipper, super coil, channel
- 2hzm.pdb.
transcription 09-aug-06 2hzm
Title: structure of the mediator head subcomplex med18/20
Author: l. lariviere, s. geiger, s. hoeppner, s. rother, k. straesser, p. cramer
Keywords: channel
- 2hzs.pdb.
transcription 09-aug-06 2hzs
Title: structure of the mediator head submodule med8c/18/20
Author: l. lariviere, s. geiger, s. hoeppner, s. rother, k. straesser, p. cramer
Keywords: channel, helix
- 2i10.pdb.
transcription 11-aug-06 2i10
Se
Title: putative tetr transcriptional regulator from rhodococcus sp. rha1
Author: j. osipiuk, e. evdokimova, m. kudritska, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc5890, tetr family, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i1s.pdb.
structural genomics, unknown function 14-aug-06 2i1s
Title: crystal structure of hypothetical protein mm_3350 from methanosarcina mazei go1
Author: b. nocek, m. borovilos, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mad, psi-2,mcsg, structural genomics, hypothetical protein, protein structure initiative, midwest center for structural genomics
- 2i3g.pdb.
oxidoreductase 18-aug-06 2i3g
Title: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase (rv1652) from mycobacterium tuberculosis in complex with nadp+.
Author: l. t. cherney, m. m. cherney, c. r. garen, f. moraidin, m. n. g. james, mycobacterium tuberculosis structural proteomics project (xmtb)
Keywords: dimer, rossmann fold, structural genomics, mycobacterium tuberculosis structural proteomics project, xmtb
- 2i3y.pdb.
oxidoreductase 21-aug-06 2i3y
Title: crystal structure of human glutathione peroxidase 5
Author: k. l. kavanagh, c. johansson, a. rojkova, c. umeano, g. bunkoczi, o. gileadi, f. von delft, j. weigelt, c. arrowsmith, m. sundstrom, a. edwards, u. oppermann, structural genomics consortium (sgc)
Keywords: epididymal androgen related protein, structural genomics, structural genomics consortium, sgc
- 2i4y.pdb.
hydrolase 22-aug-06 2i4y
Zn
Title: catalytic domain of human histone deacetylase hdac7
Author: j. r. min, a. schuetz, a. allali-hassani, p. loppnau, n. p. kwiatkowski, r. mazitschek, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, m. vedadi, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2i52.pdb.
structural genomics, unknown function 23-aug-06 2i52
Cl Ca
Title: structure of hypothetical protein pto0218 from picrophilus torridus
Author: u. a. ramagopal, j. gilmore, r. toro, k. t. bain, c. mckenzie, c. reyes, m. j. sauder, s. k. burley, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: unknown function, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2i5p.pdb.
oxidoreductase 25-aug-06 2i5p
Title: crystal structure of glyceraldehyde-3-phosphate dehydrogenase isoform 1 from k. marxianus
Author: f. ferreira-da-silva, p. j. b. pereira, l. gales, p. moradas- ferreira, a. m. damas
Keywords: apo form, dimer, gapdh
- 2i5t.pdb.
structural genomics, unknown function 25-aug-06 2i5t
Se
Title: crystal structure of hypothetical protein loc79017 from homo sapiens
Author: e. bae, g. e. wesenberg, g. n. phillips jr, e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: psi-2, protein structure initiative, center for eukaryotic structural genomics, cesg
- 2i62.pdb.
transferase 27-aug-06 2i62
Title: mouse nicotinamide n-methyltransferase
Author: j. min, h. wu, h. zeng, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2i6g.pdb.
structural genomics, unknown function 28-aug-06 2i6g
Cl Se
Title: crystal structure of putative methyltransferase (16420133) from salmonella typhimurium lt2 at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2i6l.pdb.
transferase 29-aug-06 2i6l
Title: crystal structure of human mitogen activated protein kinase 6 (mapk6)
Author: p. filippakopoulos, a. p. turnbull, p. savitsky, o. fedorov, g. berridge, s. das, j. elkins, m. soundararajan, x. w. yang, d. doyle, e. papagrigoriou, a. c. w. pike, g. bunkonczi, e. ugochukwu, j. debreczeni, f. von delft, a. edwards, c. arrowsmith, m. sundstrom, s. knapp, structural genomics consortium (sgc)
Keywords: erk3, mitogen activated protein kinase 6, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation, structural genomics, structural genomics consortium, sgc
- 2i7a.pdb.
hydrolase 30-aug-06 2i7a
Ca
Title: domain iv of human calpain 13
Author: j. r. walker, k. ng, t. l davis, r. ravulapalli, c. butler-cole, p. j. finerty jr. , e. m. newman, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: calcium-dependent cytoplasmic cysteine proteinases, papain-like, ef-hand, structural genomics, structural genomics consortium, sgc
- 2i7c.pdb.
transferase 30-aug-06 2i7c
Title: the crystal structure of spermidine synthase from p. falciparum in complex with adodato
Author: w. qiu, a. dong, h. ren, h. wu, g. wasney, m. vedadi, j. lew, i. kozieradski, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. n. plotnikov, a. bochkarev, r. hui, structural genomics consortium (sgc)
Keywords: spermidine synthase, structural genomics consortium, sgc
- 2i7q.pdb.
transferase 31-aug-06 2i7q
Cl U
Title: crystal structure of human choline kinase a
Author: w. m. rabeh, w. tempel, l. nedyalkova, g. wasney, r. landry, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: choline kinase, structural genomics, structural genomics consortium, sgc
- 2iw6.pdb.
cell cycle complex 26-jun-06 2iw6
Cl Mg
Title: structure of human thr160-phospho cdk2-cyclin a complexed with a bisanilinopyrimidine inhibitor
Author: d. j. pratt, j. bentley, p. jewsbury, f. t. boyle, j. a. endicott, m. e. m. noble
Keywords: nucleotide-binding, serine/threonine-protein kinase, cell cycle complex, kinase, cyclin, mitosis, cell cycle, transferase, atp-binding, polymorphism, cell division, serine-threonine-protein kinase
- 2iw8.pdb.
cell cycle complex 27-jun-06 2iw8
Title: structure of human thr160-phospho cdk2-cyclin a f82h-l83v- h84d mutant with an o6-cyclohexylmethylguanine inhibitor
Author: d. j. pratt, j. bentley, p. jewsbury, f. t. boyle, j. a. endicott, m. e. m. noble
Keywords: nucleotide-binding, serine/threonine-protein kinase, cell cycle complex, kinase, cyclin, mitosis, cell cycle, transferase, atp-binding, polymorphism, cell division, serine-threonine-protein kinase
- 2iw9.pdb.
cell cycle complex 27-jun-06 2iw9
Mg
Title: structure of human thr160-phospho cdk2-cyclin a complexed with a bisanilinopyrimidine inhibitor
Author: d. j. pratt, j. bentley, p. jewsbury, f. t. boyle, j. a. endicott, m. e. m. noble
Keywords: nucleotide-binding, serine/threonine-protein kinase, cell cycle complex, kinase, cyclin, mitosis, cell cycle, transferase, atp-binding, polymorphism, cell division, serine-threonine-protein kinase
- 2ixy.pdb.
rna 11-jul-06 2ixy
(NMR, 23 structures)
Title: solution structure of the apical stem-loop of the human hepatitis b virus encapsidation signal
Author: s. flodell, m. petersen, f. girard, j. zdunek, k. kidd-ljunggren, j. schleucher, s. s. wijmenga
Keywords: rdc, rna, pseudo triloop
- 2ixz.pdb.
rna 11-jul-06 2ixz
(NMR, 12 structures)
Title: solution structure of the apical stem-loop of the human hepatitis b virus encapsidation signal
Author: s. flodell, m. petersen, f. girard, j. zdunek, k. kidd-ljunggren, j. schleucher, s. s. wijmenga
Keywords: rdc, rna, pseudo triloop
- 2iy5.pdb.
ligase 12-jul-06 2iy5
Mg
Title: phenylalanyl-trna synthetase from thermus thermophilus complexed with trna and a phenylalanyl-adenylate analog
Author: n. moor, o. kotik-kogan, d. tworowski, m. sukhanova, m. safro
Keywords: helix-turn-helix motif, aminoacyl-trna synthetase
- 2iy6.pdb.
oxidoreductase 13-jul-06 2iy6
Cl Na
Title: 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound citrate
Author: e. inagaki, k. sakamoto, m. nishio, s. yokoyama
Keywords: citrate, dehyrogenase, oxidoreductase
- 2iyg.pdb.
signal transduction 17-jul-06 2iyg
Title: dark state structure of the bluf domain of the rhodobacterial protein appa
Author: a. jung, j. reinstein, t. domratcheva, r. l. shoeman, i. schlichting
Keywords: bluf
- 2iyi.pdb.
signal transduction 17-jul-06 2iyi
Title: structure of a light-induced intermediate of the bluf domain of the rhodobacterial protein appa
Author: a. jung, j. reinstein, t. domratcheva, r. l. shoeman, i. schlichting
Keywords: bluf
- 2izo.pdb.
hydrolase 25-jul-06 2izo
Mg Zn
Title: structure of an archaeal pcna1-pcna2-fen1 complex
Author: a. s. dore, m. l. kilkenny, s. m. roe, l. h. pearl
Keywords: dna-binding, endonuclease, metal-binding, excision repair, dna replication, pcna, fen1, nuclease, hydrolase, magnesium
- 2izp.pdb.
toxin 25-jul-06 2izp
Title: bipd - an invasion prtein associated with the type-iii secretion system of burkholderia pseudomallei.
Author: p. t. erskine, m. j. knight, a. ruaux, h. mikolajek, n. wong-fat-sang, j. withers, r. gill, s. p. wood, m. wood, g. c. fox, j. b. cooper
Keywords: invasion protein, toxin, type-iii secretion system
- 2j0a.pdb.
transferase 01-aug-06 2j0a
K
Title: structure of the catalytic domain of mouse manic fringe
Author: m. jinek, y. -w. chen, h. clausen, s. m. cohen, e. conti
Keywords: developmental protein, transmembrane, golgi apparatus, notch signaling, membrane, transferase, glycoprotein, signal-anchor
- 2j0b.pdb.
transferase 01-aug-06 2j0b
Mn K
Title: structure of the catalytic domain of mouse manic fringe in complex with udp and manganese
Author: m. jinek, y. -w. chen, h. clausen, s. m. cohen, e. conti
Keywords: developmental protein, transmembrane, golgi apparatus, notch signaling, membrane, transferase, glycoprotein, signal-anchor
- 2j0c.pdb.
oxidoreductase 02-aug-06 2j0c
Cl Fe
Title: crystal structure of human p450 3a4 in complex with ketoconazole
Author: t. sjogren, m. ekroos
Keywords: transmembrane, oxidoreductase, endoplasmic reticulum, drug metabolizing enzyme, ketoconazol, polymorphism, monooxygenase, p450, nadp, iron, heme, cyp3a4, membrane, microsome
- 2j0d.pdb.
oxidoreductase 02-aug-06 2j0d
Fe
Title: crystal structure of human p450 3a4 in complex with erythromycin
Author: t. sjogren, m. ekroos
Keywords: erythromycin, monooxygenase, metal-binding, transmembrane, oxidoreductase, endoplasmic reticulum, drug metabolizing enzyme, p450, nadp, iron, heme, cyp3a4, membrane, microsome
- 2j0s.pdb.
hydrolase 04-aug-06 2j0s
Mg
Title: the crystal structure of the exon junction complex at 2.2 a resolution
Author: f. bono, j. ebert, e. lorentzen, e. conti
Keywords: rna-binding, coiled coil, ejc, helicase, hydrolase, transport, acetylation
- 2j0u.pdb.
hydrolase 04-aug-06 2j0u
Title: the crystal structure of eif4aiii-barentsz complex at 3.0 a resolution
Author: f. bono, j. ebert, e. lorentzen, e. conti
Keywords: dna-binding, nuclear protein, rrna processing, dead-box helicase, nucleotide-binding, ejc, helicase, hydrolase, rna-binding, acetylation
- 2j14.pdb.
transcription 08-aug-06 2j14
Cl
Title: 3,4,5-trisubstituted isoxazoles as novel ppardelta agonists: part2
Author: r. epple, m. azimioara, r. russo, y. xie, x. wang, c. cow, j. wityak, d. karanewsky, b. bursulaya, a. kreusch, t. tuntland, a. gerken, m. iskandar, e. saez, h. m. seidel, s. s. tian
Keywords: transcription regulation, ppar, zinc, receptor, activator, fatty acids, nuclear protein, alternative splicing, zinc-finger, dna-binding, transcription, metal-binding
- 2j1k.pdb.
virus/receptor complex 14-aug-06 2j1k
Title: cav-2 fibre head in complex with car d1
Author: e. seiradake, h. lortat-jacob, o. billet, e. j. kremer, s. cusack
Keywords: transmembrane, tight junction, coxsackievirus, fiber head, adenovirus, fibre head, lipoprotein, car, knob, fiber, fibre, cav-2, canine
- 2j1n.pdb.
outer membrane protein 15-aug-06 2j1n
Cl Mg
Title: osmoporin ompc
Author: a. basle, p. storici, g. rummel, j. rosenbusch, t. schirmer
Keywords: ion transport, membrane, non-specific porin, general porin, osmoporin, outer membrane, transmembrane transport
- 2j1r.pdb.
carbohydrate-binding protein 15-aug-06 2j1r
Ca
Title: structure of a streptococcus pneumoniae fucose binding module
Author: a. b. boraston, d. wang, r. d. burke
- 2j1s.pdb.
carbohydrate-binding protein 15-aug-06 2j1s
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with fucose
Author: a. b. boraston, d. wang, r. d. burke
- 2j1t.pdb.
carbohydrate-binding protein 15-aug-06 2j1t
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the lewis y antigen
Author: a. b. boraston, d. wang, r. d. burke
- 2j1u.pdb.
carbohydrate-binding protein 15-aug-06 2j1u
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the blood group a-tetrasaccharide
Author: a. b. boraston, d. wang, r. d. burke
- 2j1v.pdb.
carbohydrate-binding protein 15-aug-06 2j1v
Ca
Title: structure of a streptococcus pneumoniae fucose binding module in complex with the blood group h-trisaccharide
Author: a. b. boraston, d. wang, r. d. burke
- 2j22.pdb.
carbohydrate-binding protein 15-aug-06 2j22
Ca
Title: structure of a streptococcus pneumoniae fucose binding module, spx-3
Author: a. b. boraston, d. wang, r. d. burke
- 2j4f.pdb.
hydrolase 30-aug-06 2j4f
Hg
Title: torpedo acetylcholinesterase - hg heavy-atom derivative
Author: d. i. kreimer, e. a. dolginova, m. raves, j. l. sussman, i. silman, l. weiner
Keywords: gpi-anchor
- 2j4o.pdb.
protein binding 01-sep-06 2j4o
Title: structure of tab1
Author: d. van aalten
Keywords: pseudo-phosphatase, tak1 binding protein, protein binding
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