Recent PDB releases or updates: week of 8 September 2006
- 1udz.pdb.
ligase 08-may-03 1udz
Title: isoleucyl-trna synthetase editing domain
Author: r. fukunaga, s. fukai, r. ishitani, o. nureki, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: cp1, editing, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1ue0.pdb.
ligase 08-may-03 1ue0
Title: isoleucyl-trna synthetase editing domain complexed with l- valine
Author: r. fukunaga, s. fukai, r. ishitani, o. nureki, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: cp1, editing, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1uzb.pdb.
oxidoreductase 09-mar-04 1uzb
Title: 1-pyrroline-5-carboxylate dehydrogenase
Author: t. h. tahirov, e. inagaki
Keywords: 1-pyrroline-5-carboxylate, oxidoreductase
- 1w7c.pdb.
oxidoreductase 01-sep-04 1w7c
Cl Mg Cu Ca
Title: pplo at 1.23 angstroms
Author: a. p. duff, a. e. cohen, p. j. ellis, j. m. guss
Keywords: copper, oxidoreductase, quinoprotein, topaquinone enzyme, tpq, oxidase
- 1w8c.pdb.
transferase 20-sep-04 1w8c
Title: co-crystal structure of 6-cyclohexylmethoxy-8-isopropyl-9h- purin-2-ylamine and monomeric cdk2
Author: d. j. pratt, j. a. endicott, m. e. m. noble
Keywords: cell cycle, phosphorylation, cell division, mitosis, inhibition
- 1wk8.pdb.
ligase 30-may-04 1wk8
Title: isoleucyl-trna synthetase editing domain complexed with the pre-transfer editing substrate analogue, val-ams
Author: r. fukunaga, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses
- 1wny.pdb.
ligase 11-aug-04 1wny
Title: isoleucyl-trna synthetase editing domain
Author: r. fukunaga, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1wnz.pdb.
ligase 11-aug-04 1wnz
Title: isoleucyl-trna synthetase editing domain complexed with the post-transfer editing substrate analogue, val-2aa
Author: r. fukunaga, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1xxx.pdb.
lyase 09-nov-04 1xxx
Cl Mg
Title: crystal structure of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosis
Author: g. kefala, s. panjikar, r. janowski, m. s. weiss
Keywords: dapa, rv2753c, mycobacterium tuberculosis, lysine biosynthesis
- 1zlm.pdb.
signaling protein 06-may-05 1zlm
Title: crystal structure of the sh3 domain of human osteoclast stimulating factor
Author: l. chen, y. wang, d. wells, d. toh, h. harold, j. zhou, e. digiammarino, e. j. meehan
- 1zlr.pdb.
hydrolase 09-may-05 1zlr
B
Title: factor xi catalytic domain complexed with 2-guanidino-1-(4- (4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethyl nicotinate
Author: t. i. lazarova, l. jin, m. rynkiewicz, j. c. gorga, f. bibbins, h. v. meyers, r. babine, j. strickler
Keywords: boron, covalent inhibitor
- 1zmj.pdb.
hydrolase 10-may-05 1zmj
B
Title: crystal structure of the catalytic domain of factor xi in complex with 4-(guanidinomethyl)-phenylboronic acid
Author: t. i. lazarova, l. jin, m. j. rynkiewicz, j. c. gorga, f. bibbins, h. v. meyers, r. e. babine, j. e. strickler
Keywords: inhibitor
- 1zml.pdb.
transferase 10-may-05 1zml
B
Title: crystal structure of the catalytic domain of factor xi in complex with (r)-1-(4-(4-(hydroxymethyl)-1,3,2- dioxaborolan-2-yl)phenethyl)guanidine
Author: t. i. lazarova, l. jin, m. j. rynkiewicz, j. c. gorga, f. bibbins, h. v. meyers, r. e. babine, j. e. strickler
Keywords: inhibitor
- 1zmn.pdb.
hydrolase 10-may-05 1zmn
B
Title: crystal structure of the catalytic domain of coagulation factor xi in complex with (r)-1-(4-(4-(hydroxymethyl)-1,3, 2-dioxaborolan-2-yl)phenyl)guanidine
Author: t. i. lazarova, l. jin, m. j. rynkiewicz, j. c. gorga, f. bibbins, h. v. meyers, r. e. babine, j. e. strickler
Keywords: inhibitor
- 2a2q.pdb.
hydrolase/blood clotting 22-jun-05 2a2q
Cl Mg Zn Na Ca
Title: complex of active-site inhibited human coagulation factor viia with human soluble tissue factor in the presence of ca2+, mg2+, na+, and zn2+
Author: s. p. bajaj, m. bajaj, a. e. schmidt, k. padmanabhan
Keywords: soluble tissue factor, mg2+, ca2+, na+, zn2+
- 2aer.pdb.
blood clotting 23-jul-05 2aer
Cl Mg Zn Na Ca
Title: crystal structure of benzamidine-factor viia/soluble tissue factor complex.
Author: s. p. bajaj, a. e. schmidt, k. padmanabhan, m. s. bajaj, a. liesum, j. dumas, d. prevost, h. schreuder
Keywords: calcium, magnesium, zinc, sodium, factor viia, tissue factor, benzamidine, blood coagulation, clotting, blood, coagulation, clotting factor, coagulation factor
- 2amw.pdb.
structural genomics, unknown function 10-aug-05 2amw
(NMR, 20 structures)
Title: solution structure of a hypothetical protein (ne2066) from nitrosomonas_europaea
Author: s. srisailam, j. a. lukin, a. yee, a. semesi, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
- 2an7.pdb.
dna binding protein 11-aug-05 2an7
(NMR, 24 structures)
Title: solution structure of the bacterial antidote pard
Author: m. oberer, k. zangger, k. gruber, w. keller
Keywords: ribbon-helix-helix, dna-binding motif, plasmid addiction
- 2ap0.pdb.
ribonucleic acid 15-aug-05 2ap0
(NMR, 20 structures)
Title: solution structure of the c27a scylv p1-p2 frameshifting pseudoknot, 20 lowest energy structures
Author: p. v. cornish, d. p. giedroc
- 2ap5.pdb.
ribonucleic acid 15-aug-05 2ap5
(NMR, minimized average structure)
Title: solution structure of the c27a scylv p1-p2 frameshifting pseudoknot, average structure
Author: p. v. cornish, d. p. giedroc
- 2arl.pdb.
luminescent protein 19-aug-05 2arl
Cl I
Title: the 2.0 angstroms crystal structure of a pocilloporin at ph 3.5: the structural basis for the linkage between color transition and halide binding
Author: p. g. wilmann, j. battad, t. beddoe, s. olsen, s. c. smith, s. dove, r. j. devenish, j. rossjohn, m. prescott
Keywords: luminescence
- 2asc.pdb.
toxin 23-aug-05 2asc
Cl K
Title: scorpion toxin lqh-alpha-it
Author: r. kahn, i. karbat, m. gurevitz, f. frolow
Keywords: scorpion
- 2atb.pdb.
toxin 24-aug-05 2atb
Cl
Title: triple mutant 8d9d10v of scorpion toxin lqh-alpha-it
Author: r. kahn, i. karbat, m. gurevitz, f. frolow
Keywords: muation, scorpion
- 2aut.pdb.
hydrolase 29-aug-05 2aut
Mg Na
Title: crystal structure of lys154asn mutant of mature apha of s. typhimurium
Author: r. d. makde, g. d. gupta, v. kumar
Keywords: lys154asn mutant of mature apha, metalloenzyme
- 2avg.pdb.
structural protein 30-aug-05 2avg
(NMR, 29 structures)
Title: nmr structure of cc1 domain from human cardiac myosin binding protein c
Author: a. ababou, m. gautel, m. pfuhl
- 2b0f.pdb.
hydrolase 13-sep-05 2b0f
(NMR, 20 structures)
Title: nmr structure of the human rhinovirus 3c protease (serotype 14) with covalently bound ace-lealfq-ethylpropionate inhibitor
Author: t. c. bjorndahl, l. c. andrew, d. s. wishart
Keywords: protein-inhibitor complex
- 2b1k.pdb.
oxidoreductase 15-sep-05 2b1k
Title: crystal structure of e. coli ccmg protein
Author: n. ouyang, y. -g. gao, h. -y. hu, z. -x. xia
Keywords: n-terminal beta-sheet, fingerprint rigion
- 2b1l.pdb.
oxidoreductase 16-sep-05 2b1l
Title: crystal structure of n-terminal 57 residue deletion mutant of e. coli ccmg protein(residues 58-185)
Author: n. ouyang, y. -g. gao, h. -y. hu, z. -x. xia
Keywords: folding topology change
- 2b2k.pdb.
isomerase 19-sep-05 2b2k
Mg Mn
Title: structure of y104f idi-1 mutant in complex with eipp
Author: j. wouters
- 2b3s.pdb.
oxidoreductase 21-sep-05 2b3s
Title: structure of the dsba mutant (p31g-c33a)
Author: c. vives, a. royant, l. serre
- 2b4f.pdb.
hydrolase 23-sep-05 2b4f
Title: structure of a cold-adapted family 8 xylanase in complex with substrate
Author: d. de vos, t. collins, s. n. savvides, g. feller, j. j. van beeumen
Keywords: xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8
- 2b8h.pdb.
hydrolase 07-oct-05 2b8h
Cl
Title: a/nws/whale/maine/1/84 (h1n9) reassortant influenza virus neuraminidase
Author: b. j. smith, d. platis, m. m. j. cox, t. huyton, r. p. joosten, j. l. mckimm-breschkin, j. -g. zhang, c. s. luo, m. -z. lou, t. p. j. garrett, n. e. labrou
- 2bhp.pdb.
oxidoreductase 16-jan-05 2bhp
Na
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nad.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bhq.pdb.
oxidoreductase 16-jan-05 2bhq
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound product glutamate.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bja.pdb.
oxidoreductase 01-feb-05 2bja
Cl
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nadh
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2bjk.pdb.
oxidoreductase 04-feb-05 2bjk
Cl
Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nad and citrate.
Author: e. inagaki, t. h. tahirov
Keywords: dehyrogenase, oxidoreductase
- 2boy.pdb.
oxidoreductase 06-apr-05 2boy
Mg Fe
Title: crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus opacus 1cp
Author: m. ferraroni, i. p. solyanikova, m. p. kolomytseva, a. scozzafava, l. a. golovleva, f. briganti
Keywords: oxidoreductase, dioxygenase
- 2bpd.pdb.
receptor 19-apr-05 2bpd
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan,fungal recognition, c-type lectin-like domain, ctld,carbohydrate
- 2bpe.pdb.
receptor 19-apr-05 2bpe
Cl Ca
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan, fungal recognition, c-type lectin-like domain, ctld
- 2bph.pdb.
receptor 19-apr-05 2bph
Mg
Title: structure of murine dectin-1
Author: j. brown, c. a. o'callaghan, a. s. j. marshall, r. j. c. gilbert, c. siebold, s. gordon, g. d. brown, e. y. jones
Keywords: dectin-1, beta-glucan, fungal recognition, c-type lectin-like domain, ctld, carbohydrate
- 2brt.pdb.
oxidoreductase 10-nov-04 2brt
Fe
Title: anthocyanidin synthase from arabidopsis thaliana complexed with naringenin
Author: j. j. turnbull, i. j. clifton, r. w. d. welford, c. j. schofield
Keywords: dioxygenase, flavonoid biosynthesis, flavonoid biosynthesis, iron, metal-binding, oxidoreductase, vitamin c
- 2bru.pdb.
oxidoreductase 28-apr-05 2bru
(NMR, 10 structures)
Title: complex of the domain i and domain iii of escherichia coli transhydrogenase
Author: t. johansson, a. pedersen, j. leckner, b. g. karlsson
Keywords: transhydrogenase, inner membrane, membrane, nad, nadp, oxidoreductase, transmembrane
- 2bsl.pdb.
oxidoreductase 11-may-05 2bsl
Mg
Title: crystal structure of l. lactis dihydroorotate dehydrogense a in complex with 3,4-dihydroxybenzoate
Author: a. e. wolfe, m. hansen, s. g. gattis, y. hu, e. johansson, s. arent, s. larsen, b. a. palfey
Keywords: dihydroorotate dehydrogenase, fmn, flavoprotein, oxidoreductase, pyrimidine biosynthesis
- 2bsn.pdb.
biosynthetic protein 23-may-05 2bsn
Se
Title: structure analysis of cobe, an essential protein of cobalamin biosynthesis from pseudomonas aeruginosa
Author: j. vevodova, r. m. graham, e. raux, m. j. warren, k. s. wilson
Keywords: vitamin b12, pseudomonas aeruginosa, cobe, biosynthetic protein
- 2bx7.pdb.
oxidoreductase 31-may-05 2bx7
Mg
Title: crystal structure of l. lactis dihydroorotate dehydrogense a in complex with 3,5-dihydroxybenzoate
Author: a. e. wolfe, m. hansen, s. g. gattis, y. hu, e. johansson, s. arent, s. larsen, b. a. palfey
Keywords: dihydroorotate dehydrogenase
- 2c0e.pdb.
chaperone 01-sep-05 2c0e
Title: structure of pdi-related chaperone, wind with his-tag on c- terminus.
Author: m. sevvana, q. ma, k. barnewitz, c. guo, h. -d. soling, d. m. ferrari, g. m. sheldrick
Keywords: windbeutel, pdi-dbeta, pdi, protein disulfide isomerase, pipe, dorsal-ventral patterning, chaperone, wind mutants, developmental protein, endoplasmic reticulum
- 2c0f.pdb.
chaperone 01-sep-05 2c0f
Title: structure of wind y53f mutant
Author: m. sevvana, q. ma, k. barnewitz, c. guo, h. -d. soling, d. m. ferrari, g. m. sheldrick
Keywords: dorsal-ventral patterning, pdi, pdi-dbeta, pipe, protein disulfide isomerase, wind, windbeutel, wind mutant, developmental protein, endoplasmic reticulum
- 2c0g.pdb.
chaperone 01-sep-05 2c0g
Cl Na
Title: structure of pdi-related chaperone, wind mutant-y53s
Author: m. sevvana, q. ma, k. barnewitz, c. guo, h. -d. soling, d. m. ferrari, g. m. sheldrick
Keywords: windbeutel, pdi-dbeta, pdi, protein disulfide isomerase, pipe, dorsal-ventral patterning, chaperone, wind mutants, developmental protein, endoplasmic reticulum
- 2c1y.pdb.
chaperone 02-sep-05 2c1y
Title: structure of pdi-related chaperone, wind mutant-y55k
Author: m. sevvana, q. ma, k. barnewitz, c. guo, h. -d. soling, d. m. ferrari, g. m. sheldrick
Keywords: windbeutel, pdi-dbeta, pdi, protein disulfide isomerase, pipe, dorsal-ventral patterning, chaperone, wind mutants, developmental protein, endoplasmic reticulum
- 2c49.pdb.
transferase 17-oct-05 2c49
Mg
Title: crystal structure of methanocaldococcus jannaschii nucleoside kinase - an archaeal member of the ribokinase family
Author: l. arnfors, t. hansen, w. meining, p. schoenheit, r. ladenstein
Keywords: nucleoside kinase, hyperthermophile, ribokinase family, ribokinase fold
- 2c4e.pdb.
transferase 18-oct-05 2c4e
Mg
Title: crystal structure of methanocaldococcus jannaschii nucleoside kinase - an archaeal member of the ribokinase family
Author: l. arnfors, t. hansen, w. meining, p. schoenheit, r. ladenstein
Keywords: nucleoside kinase, hyperthermophile, ribokinase family, ribokinase fold
- 2c7a.pdb.
receptor/dna complex 19-nov-05 2c7a
Zn
Title: structure of the progesterone receptor-dna complex
Author: s. c. roemer, d. c. donham, l. sherman, v. h. pon, d. p. edwards, m. e. a. churchill
Keywords: dna-binding, complex, metal-binding, nuclear protein, phosphorylation, steroid-binding, transcription regulation, zinc-finger, zinc, receptor/dna complex
- 2ccq.pdb.
glycoprotein 17-jan-06 2ccq
Title: the pub domain functions as a p97 binding module in human peptide n-glycanase.
Author: m. d. allen, a. buchberger, m. bycroft
Keywords: glycanase homolog
- 2chu.pdb.
binding protein 16-mar-06 2chu
Zn Fe
Title: ceue in complex with mecam
Author: a. muller, a. j. wilkinson, k. s. wilson, a. k. duhme-klair
Keywords: iron, campylobacter jejuni, mecam, self assembly, siderophore, binding protein
- 2ck3.pdb.
hydrolase 10-apr-06 2ck3
Mg
Title: azide inhibited bovine f1-atpase
Author: m. w. bowler, m. g. montgomery, a. g. w. leslie, j. e. walker
Keywords: atp phosphorylase (h+ transporting), atp synthase, f1fo atp synthase, f1-atpase, hydrolase, atp synthesis, atp-binding, azide
- 2clt.pdb.
hydrolase 29-apr-06 2clt
Zn Ca
Title: crystal structure of the active form (full-length) of human fibroblast collagenase.
Author: s. iyer, r. visse, h. nagase, k. r. acharya
Keywords: metalloprotease, collagen degradation
- 2cm0.pdb.
transferase 03-may-06 2cm0
Title: the pub domain functions as a p97 binding module in human peptide n-glycanase.
Author: m. d. allen, a. buchberger, m. bycroft
Keywords: kinase, pug domain
- 2cuz.pdb.
ligase 31-may-05 2cuz
Title: glutamyl-trna synthetase from thermus thermophilus in complex with l-glutamate
Author: s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cv0.pdb.
ligase/rna 31-may-05 2cv0
Mg
Title: glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and l-glutamate
Author: s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rna, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cv1.pdb.
ligase/rna 31-may-05 2cv1
Mg
Title: glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex
Author: s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rna, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cv2.pdb.
ligase/rna 31-may-05 2cv2
Cl Mg
Title: glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and an enzyme inhibitor, glu-ams
Author: s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: rna, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cwd.pdb.
hydrolase 20-jun-05 2cwd
Mg
Title: crystal structure of tt1001 protein from thermus thermophilus hb8
Author: n. k. lokanath, y. terao, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 2d1f.pdb.
lyase 20-aug-05 2d1f
Title: structure of mycobacterium tuberculosis threonine synthase
Author: a. s. covarrubias, t. bergfors, k. mannerstedt, s. oscarsson, t. a. jones, s. l. mowbray, m. hogbom
Keywords: pyridoxal-5'-phosphate, plp
- 2d1h.pdb.
transcription 22-aug-05 2d1h
Se
Title: crystal structure of st1889 protein from thermoacidophilic archaeon sulfolobus tokodaii
Author: a. shinkai, s. sekine, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: intermolecular and intramolecular s-s bonds, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d2w.pdb.
dna binding protein 19-sep-05 2d2w
(NMR, 20 structures)
Title: solution structure and dynamics of the dna-binding domain of myocyte nuclear factor
Author: w. -j. chuang, c. -h. chang, w. -y. jeng, y. -p. chu
Keywords: winged-helix, forkhead, nmr
- 2dfn.pdb.
transferase 03-mar-06 2dfn
Cl
Title: structure of shikiamte kinase from mycobacterium tuberculosis complexed with adp and shikimate at 1.9 angstrons of resolution
Author: m. v. b. dias, l. m. faim, i. b. vasconcelos, j. s. oliveira, l. a. basso, d. s. santos, w. f. azevedo jr.
Keywords: shikimate pathway
- 2dfu.pdb.
isomerase 03-mar-06 2dfu
Title: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7- dioate isomerase from thermus thermophilus hb8
Author: h. mizutani, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: 4-diene-1,7-dioate isomerase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2duu.pdb.
oxidoreductase 27-jul-06 2duu
Title: crystal structure of apo-form of nadp-dependent glyceraldehyde-3-phosphate dehydrogenase from synechococcus sp.
Author: t. kitatani, y. nakamura, k. wada, t. kinoshita, m. tamoi, s. shigeoka, t. tada
Keywords: rossmann fold, apo-form
- 2dwh.pdb.
metal binding protein 12-aug-06 2dwh
Zn Fe
Title: crystal structure of n-acetylglucosamine complex of bovine lactoferrin c-lobe at 2.8 a resolution
Author: r. mir, a. s. ethayathulla, n. singh, s. sharma, a. bhushan, p. kaur, t. p. singh
Keywords: lactoferrin, nag, complex
- 2dwi.pdb.
metal binding protein 13-aug-06 2dwi
Zn Fe
Title: crystal structure of the complex formed between c-terminal half of bovine lactoferrin and cellobiose at 2.2 a resolution
Author: r. prem kumar, r. mir, m. sinha, n. singh, s. sharma, p. kaur, a. bhushan, t. p. singh
Keywords: lactoferrin, cellobiose, complex
- 2es2.pdb.
gene regulation 25-oct-05 2es2
Ca
Title: crystal structure analysis of the bacillus subtilis cold shock protein bs-cspb in complex with hexathymidine
Author: k. e. a. max, m. bienert, u. heinemann
Keywords: protein-dna complex, single-stranded dna,
- 2evw.pdb.
signaling protein 01-nov-05 2evw
Mg
Title: crystal structure analysis of a fluorescent form of h-ras p21 in complex with r-caged gtp
Author: b. u. klink
Keywords: fluorescence, caged gtp
- 2evy.pdb.
ribonucleic acid 01-nov-05 2evy
(NMR, 18 structures)
Title: gnya tetranucleotide loops found in poliovirus oril by in vivo selex (un)expectedly form a ynmg-like structure
Author: w. j. g. melchers, j. zoll, m. tessari, d. v. bakhmutov, a. p. gmyl, v. i. agol, h. a. heus
Keywords: 5'ntr, cloverleaf, gnya tetranucleoitde loop
- 2f3e.pdb.
hydrolase 21-nov-05 2f3e
Title: crystal structure of the bace complex with axq093, a macrocyclic inhibitor
Author: j. -m. rondeau
Keywords: memapsin2, alzheimer's disease, aspartic protease, macrocyclic peptidomimetic inhibitor
- 2f3f.pdb.
hydrolase 21-nov-05 2f3f
Title: crystal structure of the bace complex with bdf488, a macrocyclic inhibitor
Author: j. -m. rondeau
Keywords: memapsin2, alzheimer's disease, aspartic protease, macrocyclic peptidomimetic inhibitor
- 2f8b.pdb.
oncoprotein, virus/viral protein 02-dec-05 2f8b
Zn
(NMR, 15 structures)
Title: nmr structure of the c-terminal domain (dimer) of hpv45 oncoprotein e7
Author: o. ohlenschlager, m. gorlach
Keywords: dimer, hpv, oncoprotein, zinc binding
- 2fa9.pdb.
protein transport 07-dec-05 2fa9
Mg
Title: the crystal structure of sar1[h79g]-gdp provides insight into the coat-controlled gtp hydrolysis in the disassembly of cop ii
Author: y. rao, m. huang, c. yuan, c. bian, x. hou
- 2fep.pdb.
transcription 16-dec-05 2fep
Title: structure of truncated ccpa in complex with p-ser-hpr and sulfate ions
Author: v. chaptal, v. gueguen-chaignon, s. poncet, c. lecampion, p. meyer, j. deutscher, a. galinier, s. nessler
Keywords: hpr, transcriptional regulator
- 2fir.pdb.
blood clotting 30-dec-05 2fir
Cl Mg Zn Na Ca
Title: crystal structure of dfpr-viia/stf
Author: s. p. bajaj, a. e. schmidt, k. padmanabhan, m. s. bajaj, d. prevost, h. schreuder
Keywords: soluble tissue factor, sodium, magnesium, zinc, oxyanion hole, serine protease, blood coagulation
- 2fmx.pdb.
protein transport 10-jan-06 2fmx
Mg
Title: an open conformation of switch i revealed by sar1-gdp crystal structure at low mg(2+)
Author: y. rao, c. bian, c. yuan, y. li, m. huang
Keywords: crystal structure, cop ii assembly, dimerization
- 2fns.pdb.
hydrolase 11-jan-06 2fns
Title: crystal structure of wild-type inactive (d25n) hiv-1 protease complexed with wild-type hiv-1 nc-p1 substrate.
Author: m. prabu-jeyabalan, e. a. nalivaika, c. a. schiffer
Keywords: substrate recognition, hiv-1 protease, nc-p1 substrate, drug resistance, flap conformation
- 2fnt.pdb.
hydrolase 11-jan-06 2fnt
Title: crystal structure of a drug-resistant (v82a) inactive (d25n) hiv-1 protease complexed with ap2v variant of hiv-1 nc-p1 substrate.
Author: m. prabu-jeyabaln, e. a. nalivaika, c. a. schiffer
Keywords: substrate recognition, hiv-1 protease, nc-p1 substrate, drug resistance, flap conformation
- 2fot.pdb.
metal binding, structural protein 13-jan-06 2fot
Ca
Title: crystal structure of the complex between calmodulin and alphaii-spectrin
Author: m. simonovic, z. zhang, c. d. cianci, t. a. steitz, j. s. morrow
Keywords: calmodulin binding domain, spectrin
- 2fpr.pdb.
hydrolase 17-jan-06 2fpr
Mg Zn Br Na
Title: crystal structure the n-terminal domain of e. coli hisb. apo mg model.
Author: e. s. rangarajan, m cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fps.pdb.
hydrolase 17-jan-06 2fps
Cl Zn Ca
Title: crystal structure of the n-terminal domain of e.coli hisb- apo ca model.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme. , structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpu.pdb.
hydrolase 17-jan-06 2fpu
Cl Mg Zn
Title: crystal structure of the n-terminal domain of e.coli hisb- complex with histidinol
Author: e. s. rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, bacterial structure genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpw.pdb.
hydrolase 17-jan-06 2fpw
Zn Ca
Title: crystal structure of the n-terminal domain of e.coli hisb- phosphoaspartate intermediate.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme. , structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fpx.pdb.
hydrolase 17-jan-06 2fpx
Mg Zn
Title: crystal structure of the n-terminal domain of e.coli hisb- sulfate complex.
Author: e. s rangarajan, m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: hisb, bifunctional enzyme., structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fsd.pdb.
virus/viral protein 22-jan-06 2fsd
Title: a common fold for the receptor binding domains of lactococcal phages? the crystal structure of the head domain of phage bil170
Author: s. ricagno, c. cambillau
Keywords: lactococcus lactis, receptor binding protein, head domain
- 2fvu.pdb.
transcription 31-jan-06 2fvu
Title: structure of the yeast sir3 bah domain
Author: r. m. xu
- 2fw4.pdb.
lyase 01-feb-06 2fw4
Zn
Title: carbonic anhydrase activators. the first x-ray crystallographic study of an activator of isoform i, structure with l-histidine.
Author: c. temperini, a. scozzafava, c. t. supuran
Keywords: activators, crystal structure
- 2fy8.pdb.
transport protein 07-feb-06 2fy8
Title: crystal structure of mthk rck domain in its ligand-free gating-ring form
Author: s. ye, y. jiang
Keywords: transition state
- 2g5f.pdb.
biosynthetic protein 22-feb-06 2g5f
Title: the structure of mbti from mycobacterium tuberculosis, the first enzyme in the synthesis of mycobactin, reveals it to be a salicylate synthase
Author: a. j. harrison, j. s. lott, m. yu, r. ramsay, e. n. baker
- 2g6x.pdb.
luminescent protein 26-feb-06 2g6x
Title: crystal structure of a novel green fluorescent protein from marine copepod pontellina plumata
Author: a. g. evdokimov, m. e. pokross, d. m. chudakov
Keywords: natural chromophore, rapid maturation, beta can
- 2g6y.pdb.
luminescent protein 26-feb-06 2g6y
Title: crystal structure of the novel green fluorescent protein from marine copepod pontellina plumata
Author: a. g. evdokimov, m. e. pokross, d. m. chudakov
Keywords: natural chromophore, rapid maturation, beta-can
- 2g7y.pdb.
hydrolase 01-mar-06 2g7y
F
Title: human cathepsin s with inhibitor cra-16981
Author: j. r. somoza
Keywords: cysteine protease, 16981
- 2g87.pdb.
signaling protein 02-mar-06 2g87
Hg Zn
Title: crystallographic model of bathorhodopsin
Author: h. nakamichi, t. okada
Keywords: g protein-coupled receptor, visual pigment
- 2g8e.pdb.
hydrolase 02-mar-06 2g8e
Ca
Title: calpain 1 proteolytic core in complex with snj-1715, a cyclic hemiacetal-type inhibitor
Author: d. cuerrier, t. moldoveanu, p. l. davies, r. l. campbell
Keywords: peptidase, inhibitor, cyclic hemiacetal, aldehyde
- 2g8t.pdb.
hydrolase 03-mar-06 2g8t
Ca
Title: indole-amidine complexes with bovine trypsin
Author: a. d. kline, s. l. briggs, s. subramaniam
- 2g95.pdb.
transferase 05-mar-06 2g95
Title: crystal structure of visfatin/pre-b cell colony enhancing factor 1/nicotinamide phosphoribosyltransferase
Author: m. -k. kim, s. h. eom
Keywords: pbef, namprtase, rattus norvegicus
- 2g96.pdb.
transferase 05-mar-06 2g96
Title: crystal structure of visfatin/pre-b cell colony enhancing factor 1/nicotinamide phosphoribosyltransferase in complex with niconamide mononucleotide
Author: s. h. eom, m. -k. kim
Keywords: pbef, namprtase, nmn, rattus norvegicus
- 2g97.pdb.
transferase 05-mar-06 2g97
Title: crystal structure of visfatin/pre-b cell colony enhancing factor 1/nicotinamide phosphoribosyltransferase in complex with the specific inhibitor fk-866
Author: m. -k. kim, s. h. eom
Keywords: pbef, namprtase, fk-866, rattus norvegicus
- 2gaq.pdb.
transferase 09-mar-06 2gaq
(NMR, 19 structures)
Title: nmr solution structure of the frb domain of mtor
Author: m. leone, m. pellecchia
- 2gcd.pdb.
transferase 14-mar-06 2gcd
Title: tao2 kinase domain-staurosporine structure
Author: t. zhou, l. sun, y. gao, s. earnest, m. h. cobb, e. j. goldsmith
Keywords: map3k, inhibitor, staurosporine, crystal structure
- 2gfc.pdb.
transferase 21-mar-06 2gfc
Title: camp-dependent protein kinase pka catalytic subunit with pki-5-24
Author: s. bonn, s. herrero, c. b. breitenlechner, r. a. engh, m. gassel, d. bossemeyer
Keywords: peptide inhibitor
- 2ggn.pdb.
oxidoreductase 24-mar-06 2ggn
Na Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2ghc.pdb.
oxidoreductase 27-mar-06 2ghc
Na Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2ghd.pdb.
oxidoreductase 27-mar-06 2ghd
Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2ghe.pdb.
oxidoreductase 27-mar-06 2ghe
Na Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2ghh.pdb.
oxidoreductase 27-mar-06 2ghh
K Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2ghk.pdb.
oxidoreductase 27-mar-06 2ghk
K Fe
Title: conformational mobility in the active site of a heme peroxidase
Author: s. k. badyal, m. g. joyce, k. h. sharp, e. l. raven, p. c. moody
- 2gia.pdb.
translation 28-mar-06 2gia
Title: crystal structures of trypanosoma bruciei mrp1/mrp2
Author: m. a. schumacher, e. karamooz, a. zikova, l. trantirek, j. lukes
- 2gid.pdb.
translation 28-mar-06 2gid
Se
Title: crystal structures of trypanosoma bruciei mrp1/mrp2
Author: m. a. schumacher, e. karamooz, a. zikova, l. trantirek, j. lukes
- 2gim.pdb.
electron transport 29-mar-06 2gim
Cu
Title: 1.6 angstrom structure of plastocyanin from anabaena variabilis
Author: l. schmidt, p. harris, h. e. m. christensen
Keywords: cu, helix
- 2gje.pdb.
translation/rna 30-mar-06 2gje
Se
Title: structure of a guiderna-binding protein complex bound to a grna
Author: m. a. schumacher, e. karamooz, a. zikova, l. trantirek, j. lukes
- 2gjp.pdb.
hydrolase 31-mar-06 2gjp
Na Ca
Title: structure of bacillus halmapalus alpha-amylase, crystallized with the substrate analogue acarbose and maltose
Author: l. lyhne-iversen, t. j. hobley, s. g. kaasgaard, p. harris
Keywords: maltose binding site, bacillus halmapalus
- 2gjr.pdb.
hydrolase 31-mar-06 2gjr
Na Ca
Title: structure of bacillus halmapalus alpha-amylase without any substrate analogues
Author: l. lyhne-iversen, t. j. hobley, s. g. kaasgaard, p. harris
Keywords: bacillus halmapalus
- 2gk2.pdb.
cell adhesion 31-mar-06 2gk2
Ni
Title: crystal structure of the n terminal domain of human ceacam1
Author: a. fedarovich, j. tomberg, r. a. nicholas, c. davies
Keywords: adhesion protein
- 2glg.pdb.
hormone/growth factor 04-apr-06 2glg
(NMR, 100 structures)
Title: nmr structure of the [l23,a24]-sct mutant
Author: g. andreotti, b. lopez-mendez, p. amodeo, m. a. morelli, h. nakamuta, a. motta
- 2glh.pdb.
hormone/growth factor 04-apr-06 2glh
(NMR, 100 structures)
Title: solution conformation of salmon calcitonin in sodium dodecyl sulfate micelles
Author: g. andreotti, b. lopez-mendez, p. amodeo, m. a. morelli, h. nakamuta, a. motta
- 2gms.pdb.
transferase 07-apr-06 2gms
Mg
Title: e coli gdp-4-keto-6-deoxy-d-mannose-3-dehydratase with bound hydrated plp
Author: p. d. cook, j. b. thoden, h. m. holden
Keywords: 0-antigen, aspartate aminotransferase, plp, deoxysugar
- 2gmu.pdb.
transferase 07-apr-06 2gmu
Mg
Title: crystal structure of e coli gdp-4-keto-6-deoxy-d-mannose-3- dehydratase complexed with plp-glutamate ketimine intermediate
Author: p. d. cook, j. b. thoden, h. m. holden
Keywords: deoxysugar, aspartate aminotransferase, plp, o- antigen
- 2gn4.pdb.
lyase 09-apr-06 2gn4
Title: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with nadph and udp-glcnac
Author: n. ishiyama, c. creuzenet, j. s. lam, a. m. berghuis
Keywords: tyk triad, sdr, enzyme, dehydratase, udp- glcnac, nadp, nadph
- 2gn6.pdb.
lyase 09-apr-06 2gn6
Title: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with nadp and udp-glcnac
Author: n. ishiyama, c. creuzenet, j. s. lam, a. m. berghuis
Keywords: tyk triad, sdr, enzyme, dehydratase, udp- glcnac, nadp
- 2gn8.pdb.
lyase 09-apr-06 2gn8
Title: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with nadp and udp
Author: n. ishiyama, c. creuzenet, j. s. lam, a. m. berghuis
Keywords: tyk triad, sdr, enzyme, dehydratase, udp- glcnac, nadp
- 2gn9.pdb.
lyase 09-apr-06 2gn9
Title: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with nadp and udp-glc
Author: n. ishiyama, c. creuzenet, j. s. lam, a. m. berghuis
Keywords: tyk triad, sdr, enzyme, dehydratase, udp- glcnac, nadp
- 2gna.pdb.
lyase 09-apr-06 2gna
Title: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with nadp and udp-gal
Author: n. ishiyama, c. creuzenet, j. s. lam, a. m. berghuis
Keywords: tyk triad, sdr, enzyme, dehydratase, udp- glcnac, nadp
- 2gov.pdb.
heme binding protein 14-apr-06 2gov
(NMR, 20 structures)
Title: solution structure of murine p22hbp
Author: b. f. volkman, j. s. dias, b. j. goodfellow, f. c. peterson, center for eukaryotic structural genomics (cesg)
Keywords: heme binding, structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2gv2.pdb.
ligase 02-may-06 2gv2
Cl
Title: mdm2 in complex with an 8-mer p53 peptide analogue
Author: c. schubert, k. sakurai
- 2gvd.pdb.
lyase 02-may-06 2gvd
Cl Mn
Title: complex of gs- with the catalytic domains of mammalian adenylyl cyclase: complex with tnp-atp and mn
Author: t. -c. mou, s. r. sprang
Keywords: gsa, tnp-atp
- 2gvz.pdb.
lyase 03-may-06 2gvz
Cl Mn
Title: crystal structure of complex of gs- with the catalytic domains of mammalian adenylyl cyclase: complex with mant- atp and mn
Author: t. -c. mou, s. r. sprang
Keywords: mant-atp
- 2gws.pdb.
transferase/dna 05-may-06 2gws
Cl Mg Na As
Title: crystal structure of human dna polymerase lambda with a g/g mismatch in the primer terminus
Author: m. garcia-diaz, a. j. picher, k. bebenek, l. c. pedersen, t. a. kunkel, l. blanco
Keywords: family x, mismatch extension, crystal structure, mutagenesis, nhej
- 2gzr.pdb.
hydrolase 11-may-06 2gzr
Se
Title: enterobactin and salmochelin hydrolase iroe
Author: n. a. larsen, c. t. walsh
Keywords: catalytic dyad, enterobactin
- 2gzs.pdb.
hydrolase 12-may-06 2gzs
Se
Title: enterobactin hydolase iroe complex with dfp
Author: n. a. larsen, c. t. walsh
Keywords: salmochelin, dfp, hydrolase, catalytic dyad
- 2h4f.pdb.
hydrolase 24-may-06 2h4f
Zn
Title: sir2-p53 peptide-nad+
Author: k. g. hoff, j. l. avalos, k. sens, c. wolberger
- 2h4h.pdb.
hydrolase 24-may-06 2h4h
Zn
Title: sir2 h116y mutant-p53 peptide-nad
Author: k. g. hoff, j. l. avalos, k. sens, c. wolberger
Keywords: zn-binding domain,
- 2h4j.pdb.
hydrolase 24-may-06 2h4j
Zn
Title: sir2-deacetylated peptide (from enzymatic turnover in crystal)
Author: k. g. hoff, j. l. avalos, k. sens, c. wolberger
Keywords: zn binding domain
- 2h59.pdb.
hydrolase 25-may-06 2h59
Zn
Title: sir2 h116a-deacetylated p53 peptide-3'-o-acetyl adp ribose
Author: k. g. hoff, j. l. avalos, k. sens, c. wolberger
Keywords: zn binding domain
- 2h67.pdb.
hormone/growth factor 30-may-06 2h67
(NMR, 20 structures)
Title: nmr structure of human insulin mutant his-b5-ala, his-b10- asp pro-b28-lys, lys-b29-pro, 20 structures
Author: q. x. hua, m. liu, s. q. hu, w. jia, p. arvan, m. a. weiss
Keywords: human insulin, mutant
- 2h84.pdb.
biosynthetic protein, transferase 06-jun-06 2h84
Title: crystal structure of the c-terminal type iii polyketide synthase (pks iii) domain of 'steely1' (a type i/iii pks hybrid from dictyostelium)
Author: m. b. austin, j. p. noel
Keywords: type iii polyketide synthase, pks, chalcone- stilbene synthase superfamily, type i pks, type i fatty acid synthase, fas
- 2hai.pdb.
transferase 12-jun-06 2hai
F
Title: crystal structure of hcv ns5b rna polymerase in complex with novel class of dihydropyrone-containing inhibitor.
Author: h. li, r. l. love
- 2hau.pdb.
metal transport 13-jun-06 2hau
Se
Title: apo-human serum transferrin (non-glycosylated)
Author: j. wally, s. j. everse
Keywords: human, iron transporter, apo, iron-free
- 2hav.pdb.
metal transport 13-jun-06 2hav
Title: apo-human serum transferrin (glycosylated)
Author: j. wally, s. j. everse
Keywords: human, iron transporter, apo, iron-free
- 2hc8.pdb.
transport protein 15-jun-06 2hc8
Title: structure of the a. fulgidus copa a-domain
Author: m. h. sazinsky, s. agawal, j. m. arguello, a. c. rosenzweig
Keywords: atpase, copa, copb, actuator
- 2hh4.pdb.
hormone/growth factor 27-jun-06 2hh4
(NMR, 20 structures)
Title: nmr structure of human insulin mutant gly-b8-d-ser, his-b10- asp pro-b28-lys, lys-b29-pro, 20 structures
Author: q. x. hua, s. nakagawa, s. q. hu, w. jia, m. a. weiss
Keywords: human insulin, mutant
- 2hh5.pdb.
hydrolase 27-jun-06 2hh5
Cl F Zn
Title: crystal structure of cathepsin s in complex with a zinc mediated non-covalent arylaminoethyl amide
Author: g. spraggon, m. hornsby, s. a. lesley, d. c. tully, j. l. harris, d. s. karenewsky
Keywords: noncovalent, inhibition, zinc, arylaminoethyl- amides
- 2hho.pdb.
hormone/growth factor 28-jun-06 2hho
(NMR, 20 structures)
Title: nmr structure of human insulin mutant gly-b8-ser, his-b10- asp pro-b28-lys, lys-b29-pro, 20 structures
Author: q. x. hua, s. nakagawa, s. q. hu, w. jia, m. a. weiss
Keywords: human insulin, mutant
- 2hj1.pdb.
structural genomics, unknown function 29-jun-06 2hj1
Title: crystal structure of a 3d domain-swapped dimer of hypothetical protein from haemophilus influenzae
Author: u. a. ramagopal, y. v. patskovsky, r. toro, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2hj3.pdb.
oxidoreductase 30-jun-06 2hj3
Title: structure of the arabidopsis thaliana erv1 thiol oxidase
Author: e. vitu, d. fass
Keywords: flavin adenine dinucleotide
- 2hk5.pdb.
transferase 03-jul-06 2hk5
Title: hck kinase in complex with lck targetted inhibitor pg- 1009247
Author: r. l. walter, m. j. mekel, a. g. evdokimov, m. e. pokross, m. p. sabat
Keywords: src-family, kinase domain
- 2hkt.pdb.
transcription regulator 05-jul-06 2hkt
Se
Title: structural genomics, the crystal structure of a putative transcriptional regulator yggd from shigella flexneri 2a str. 2457t
Author: k. tan, m. borovilos, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc27974, transcriptional regulator, yggd, mannitol operon repressor, mtlr, shigella flexneri 2a 2457t, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hlw.pdb.
ligase, signaling protein 10-jul-06 2hlw
(NMR, 15 structures)
Title: solution structure of the human ubiquitin-conjugating enzyme variant uev1a
Author: d. d. hau, m. j. lewis, l. f. saltibus, l. pastushok, w. xiao, l. spyracopoulos
Keywords: nmr, ubiquitin, ubc13, hubc13, e2, polyubiquitination
- 2hmc.pdb.
structural genomics, unknown function 11-jul-06 2hmc
Mg Se
Title: the crystal structure of dihydrodipicolinate synthase dapa from agrobacterium tumefaciens
Author: y. kim, r. zhang, x. xu, h. zheng, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hnd.pdb.
transferase 12-jul-06 2hnd
Mg
Title: crystal structure of k101e mutant hiv-1 reverse transcriptase in complex with nevirapine
Author: j. ren, c. e. nichols, a. stamp, p. p. chamberlain, d. k. stammers
Keywords: aids, non-nucleoside inhibitor, nevirapine, drug resistance mutations, drug design
- 2hny.pdb.
transferase 13-jul-06 2hny
Mg
Title: crystal structure of e138k mutant hiv-1 reverse transcriptase in complex with nevirapine
Author: j. ren, c. e. nichols, a. stamp, p. p. chamberlain, d. k. stammers
Keywords: aids, non-nucleoside inhibitor, nevirapine, drug resistance mutations, drug design
- 2hnz.pdb.
transferase 13-jul-06 2hnz
F
Title: crystal structure of e138k mutant hiv-1 reverse transcriptase in complex with pett-2
Author: j. ren, c. e. nichols, a. stamp, p. p. chamberlain, d. k. stammers
Keywords: aids, non-nucleoside inhibitor, pett-2, drug resistance mutations, drug design
- 2hpo.pdb.
hydrolase 17-jul-06 2hpo
Zn
Title: structure of aminopeptidase n from e. coli suggests a compartmentalized, gated active site
Author: a. addlagatta, b. w. matthews, l. gay
Keywords: closed, compartmentalized active site
- 2hpt.pdb.
hydrolase 17-jul-06 2hpt
Zn
Title: crystal structure of e. coli pepn (aminopeptidase n)in complex with bestatin
Author: a addlagatta, b. w. matthews, l. gay
Keywords: compartmentalized active site
- 2hpy.pdb.
signaling protein 18-jul-06 2hpy
Hg Zn
Title: crystallographic model of lumirhodopsin
Author: h. nakamichi, t. okada
Keywords: visual pigment
- 2hqt.pdb.
biosynthetic protein, rna binding 19-jul-06 2hqt
Title: crystal structures of the interacting domains from yeast glutamyl-trna synthetase and trna aminoacylation and nuclear export cofactor arc1p reveal a novel function for an old fold
Author: h. simader, m. hothorn, d. suck
- 2hra.pdb.
ligase 20-jul-06 2hra
I
Title: crystal structures of the interacting domains from yeast glutamyl-trna synthetase and trna aminoacylation and nuclear export cofactor arc1p reveal a novel function for an old fold
Author: h. simader, m. hothorn, d. suck
- 2hrk.pdb.
ligase/rna binding protein 20-jul-06 2hrk
Cl
Title: structural basis of yeast aminoacyl-trna synthetase complex formation revealed by crystal structures of two binary sub- complexes
Author: h. simader, d. suck
- 2hs7.pdb.
hydrolase 21-jul-06 2hs7
(powder diffraction)
Title: multipattern rietveld refinement with protein powder data: an approach to higher resolution
Author: r. b. von dreele
Keywords: rietveld refinement, lysozyme
- 2hsm.pdb.
ligase/rna binding protein 22-jul-06 2hsm
Title: structural basis of yeast aminoacyl-trna synthetase complex formation revealed by crystal structures of two binary sub- complexes
Author: h. simader, d. suck
- 2hsn.pdb.
ligase/rna binding protein 22-jul-06 2hsn
Title: structural basis of yeast aminoacyl-trna synthetase complex formation revealed by crystal structures of two binary sub- complexes
Author: h. simader, c. koehler, j. basquin, d. suck
- 2hso.pdb.
hydrolase 22-jul-06 2hso
(powder diffraction)
Title: multipattern rietveld refinement with protein powder data: an approach to higher resolution
Author: r. b. von dreele
Keywords: rietveld refinement, lysozyme
- 2ht5.pdb.
hydrolase 25-jul-06 2ht5
Ca
Title: n8 neuraminidase
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase
- 2ht7.pdb.
hydrolase 25-jul-06 2ht7
Title: n8 neuraminidase in open complex with oseltamivir
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, oseltamivir
- 2ht8.pdb.
hydrolase 25-jul-06 2ht8
Title: n8 neuraminidase in complex with oseltamivir
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, oseltamivir
- 2htq.pdb.
hydrolase 26-jul-06 2htq
Title: n8 neuraminidase in complex with zanamivir
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, zanamivir
- 2htr.pdb.
hydrolase 26-jul-06 2htr
Title: n8 neuraminidase in complex with dana
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, dana
- 2htu.pdb.
hydrolase 26-jul-06 2htu
Title: n8 neuraminidase in complex with peramivir
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, peramivir
- 2htv.pdb.
hydrolase 26-jul-06 2htv
Ca
Title: n4 neuraminidase
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase
- 2htw.pdb.
hydrolase 26-jul-06 2htw
Title: n4 neuraminidase in complex with dana
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, dana
- 2hty.pdb.
hydrolase 26-jul-06 2hty
Ca
Title: n1 neuraminidase
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase
- 2hu0.pdb.
hydrolase 26-jul-06 2hu0
Title: n1 neuraminidase in complex with oseltamivir 1
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, oseltamivir
- 2hu4.pdb.
hydrolase 26-jul-06 2hu4
Title: n1 neuraminidase in complex with oseltamivir 2
Author: r. j. russell, l. f. haire, d. j. stevens, p. j. collins, y. p. lin, g. m. blackburn, a. j. hay, s. j. gamblin, j. j. skehel
Keywords: neuraminidase, oseltamivir
- 2hv6.pdb.
unknown function 27-jul-06 2hv6
Mg
Title: crystal structure of the phosphotyrosyl phosphatase activator
Author: y. chao, p. d. jeffrey, y. shi
Keywords: phosphatase, pp2a, phosphatase specificity
- 2hv7.pdb.
unknown function 27-jul-06 2hv7
Title: crystal structure of phosphotyrosyl phosphatase activator bound to atpgammas
Author: y. chao, j. d. jeffrey, y. shi
Keywords: pp2a, phosphatase, phosphatase specificity
- 2hx1.pdb.
hydrolase 02-aug-06 2hx1
Cl Mg Se
Title: crystal structure of possible sugar phosphatase, had superfamily (zp_00311070.1) from cytophaga hutchinsonii atcc 33406 at 2.10 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: possible sugar phosphatase, had superfamily, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2hxi.pdb.
transcription 03-aug-06 2hxi
Se
Title: structural genomics, the crystal structure of a putative transcriptional regulator from streptomyces coelicolor a3(2)
Author: k. tan, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc6293, transcriptional regulator, tetr family, streptomyces coelicolor a3(2), psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hy3.pdb.
hydrolase 04-aug-06 2hy3
V Se
Title: crystal structure of the human tyrosine receptor phosphate gamma in complex with vanadate
Author: x. jin, t. min, a. bera, h. mu, j. m. sauder, j. c. freeman, c. reyes, d. smith, s. r. wasserman, s. k. burley, l. shapiro, new york structural genomics research consortium (nysgrc)
Keywords: structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2hyd.pdb.
transport protein 05-aug-06 2hyd
Na
Title: multidrug abc transporter sav1866
Author: r. j. p. dawson, k. p. locher
- 2hyj.pdb.
transcription 06-aug-06 2hyj
Ca
Title: the crystal structure of a tetr-family transcriptional regulator from streptomyces coelicolor
Author: r. zhang, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hth dna binding motif, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hyn.pdb.
membrane protein/signaling protein 07-aug-06 2hyn
(NMR, 184 structures)
Title: complete ensemble of nmr structures of unphosphorylated human phospholamban pentamer
Author: s. potluri, a. k. yan, j. j. chou, b. r. donald, c. bailey-kellogg
Keywords: pentamer, protein complex, leu/ile zipper, super coil, channel
- 2hyu.pdb.
metal binding protein 07-aug-06 2hyu
Ca
Title: human annexin a2 with heparin tetrasaccharide bound
Author: c. shao, j. f. head, b. a. seaton
Keywords: membrane-binding protein, helix bundle, heparin, tetrasaccharide
- 2hyv.pdb.
metal binding protein 07-aug-06 2hyv
Ca
Title: human annexin a2 with heparin hexasaccharide bound
Author: c. shao, j. f. head, b. a. seaton
Keywords: membrane-binding protein, helix bundle, heparin, hexasaccharide
- 2hyw.pdb.
metal binding protein 07-aug-06 2hyw
Ca
Title: human annexin a2 with calcium bound
Author: c. shao, j. f. head, b. a. seaton
Keywords: membrane-binding protein, helix bundle
- 2i1n.pdb.
signaling protein 14-aug-06 2i1n
Na
Title: crystal structure of the 1st pdz domain of human dlg3
Author: a. p. turnbull, c. phillips, g. bunkoczi, j. debreczeni, e. ugochukwu, a. c. w. pike, f. gorrec, c. umeano, j. elkins, g. berridge, p. savitsky, o. gileadi, f. von delft, j. weigelt, a. edwards, c. arrowsmith, m. sundstrom, d. doyle, structural genomics consortium (sgc)
Keywords: pdz, pdz domain, signal transduction, structural genomics, structural genomics consortium, sgc
- 2i3g.pdb.
oxidoreductase 18-aug-06 2i3g
Title: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase (rv1652) from mycobacterium tuberculosis in complex with nadp+.
Author: l. t. cherney, m. m. cherney, c. r. garen, f. moraidin, m. n. g. james, mycobacterium tuberculosis structural proteomics project (xmtb)
Keywords: dimer, rossmann fold, structural genomics, mycobacterium tuberculosis structural proteomics project, xmtb
- 2i3p.pdb.
hydrolase/dna 20-aug-06 2i3p
Ca
Title: k28r mutant of homing endonuclease i-crei
Author: d. sussman, l. rosen
Keywords: dna
- 2i3q.pdb.
hydrolase/dna 20-aug-06 2i3q
Ca
Title: q44v mutant of homing endonuclease i-crei
Author: l. rosen, d. sussman
Keywords: i-crei
- 2i4i.pdb.
hydrolase 22-aug-06 2i4i
Title: crystal structure of human dead-box rna helicase ddx3x
Author: m. hogbom, t. karlberg, c. arrowsmith, h. berglund, r. d. busam, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, b. m. hallberg, m. hammarstrom, i. johansson, t. kotenyova, a. magnusdottir, p. nilsson-ehle, p. nordlund, t. nyman, d. ogg, c. persson, j. sagemark, p. stenmark, m. sundstrom, a. g. thorsell, j. uppenberg, s. van den berg, k. wallden, j. weigelt, m. welin, l. holmberg-schiavone, structural genomics consortium (sgc)
Keywords: helicase, dead, structural genomics, sgc, structural genomics consortium
- 2i51.pdb.
structural genomics, unknown function 23-aug-06 2i51
Se
Title: crystal structure of uncharacterized conserved protein of cog5135 (zp_00109616.1) from nostoc punctiforme pcc 73102 at 1.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: uncharacterized conserved protein of cog5135, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi2
- 2i5d.pdb.
hydrolase 24-aug-06 2i5d
Title: crystal structure of human inosine triphosphate pyrophosphatase
Author: j. c. porta, s. g. kozmin, y. i. pavlov, g. e. o. borgstahl
- 2i5g.pdb.
hydrolase 24-aug-06 2i5g
Se
Title: crystal strcuture of amidohydrolase from pseudomonas aeruginosa
Author: t. min, m. sauder, s. wasserman, d. smith, s. burley, l. shapiro, new york structural genomics research consortium (nysgrc)
Keywords: nysgxrc-9311a, psi2, amidohydrolase, structural genomics, protein structure initiative, new york structural genomics research consortium
- 2i5h.pdb.
structural genomics, unknown function 24-aug-06 2i5h
Title: crystal structure of a hypothetical protein af1531 from archaeoglobus fulgidus
Author: s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: pfam:duf655, psi-2, 10225b, structural genomics, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2i5i.pdb.
structural genomics, unknown function 24-aug-06 2i5i
Se
Title: crystal structure of hypothetical protein (ef3048) from enterococcus faecalis v583 at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2i5q.pdb.
lyase 25-aug-06 2i5q
Title: crystal structure of apo l-rhamnonate dehydratase from escherichia coli
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. b. burley, j. a. gerlt, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: clone name 9265b1bct1p1_10997_1, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2i5s.pdb.
hydrolase/dna 25-aug-06 2i5s
Title: crystal structure of onconase with bound nucleic acid
Author: e. bae, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: p-30 protein, ribonuclease, anti-tumor, structural genomics, psi-2, protein structure initiative, center for eukaryotic structural genomics, cesg
- 2i5x.pdb.
hydrolase 26-aug-06 2i5x
Cl Mg
Title: engineering the ptpbeta catalytic domain with improved crystallization properties
Author: a. g. evdokimov, m. e. pokross, r. l. walter, m. mekel, s. klopfenstein
Keywords: wpd-loop, drug design, protein engineering
- 2i65.pdb.
hydrolase 28-aug-06 2i65
Title: structural basis for the mechanistic understanding human cd38 controlled multiple catalysis
Author: q. liu, i. a. kriksunov, r. graeff, c. munshi, h. c. lee, q. hao
Keywords: reaction product, reaction intermediate
- 2i66.pdb.
hydrolase 28-aug-06 2i66
Title: structural basis for the mechanistic understanding human cd38 controlled multiple catalysis
Author: q. liu, i. a. kriksunov, r. graeff, c. munshi, h. c. lee, q. hao
Keywords: reaction product, reaction intermediate
- 2i67.pdb.
hydrolase 28-aug-06 2i67
Title: structural basis for the mechanistic understanding human cd38 controlled multiple catalysis
Author: q. liu, i. a. kriksunov, r. graeff, c. munshi, h. c. lee, q. hao
Keywords: reaction product, reaction intermediate
- 2i6e.pdb.
structural genomics, unknown function 28-aug-06 2i6e
Se
Title: crystal structure of a hypothetical protein belonging to pfam:duf178 from deinococcus radiodurans
Author: r. tyagi, d. kumaran, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: pfam:duf178, nysgxrc,10093b, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium
- 2ius.pdb.
membrane protein 07-jun-06 2ius
Title: e. coli ftsk motor domain
Author: t. h. massey, c. p. mercogliano, j. yates, d. j. sherratt, j. lowe
Keywords: chromosome partition, atp-binding, dna-binding, cell division, transmembrane, inner membrane, hexameric ring, dna translocation, kops, membrane, divisome, cell cycle, aaa atpase, membrane protein
- 2iut.pdb.
membrane protein 07-jun-06 2iut
Mg
Title: p. aeruginosa ftsk motor domain, dimeric
Author: t. h. massey, c. p. mercogliano, j. yates, d. j. sherratt, j. lowe
Keywords: chromosome partition, atp-binding, dna-binding, cell division, transmembrane, inner membrane, hexameric ring, dna translocation, kops, membrane, divisome, cell cycle, aaa atpase, membrane protein
- 2iuu.pdb.
membrane protein 07-jun-06 2iuu
Title: p. aeruginosa ftsk motor domain, hexamer
Author: t. h. massey, c. p. mercogliano, j. yates, d. j. sherratt, j. lowe
Keywords: membrane protein
- 2iw3.pdb.
translation 26-jun-06 2iw3
Se
Title: elongation factor 3 in complex with adp
Author: c. b. f. andersen, t. becker, m. blau, m. anand, m. halic, b. balar, t. mielke, t. boesen, j. s. pedersen, c. m. t. spahn, t. g. kinzy, g. r. andersen, r. beckmann
Keywords: atp-binding, elongation factor, protein biosynthesis, nucleotide-binding, phosphorylation, rna-binding, rrna-binding, translation
- 2iwf.pdb.
oxidoreductase 29-jun-06 2iwf
Cl Cu Na Ca
Title: resting form of pink nitrous oxide reductase from achromobacter cycloclastes
Author: k. paraskevopoulos, s. v. antonyuk, r. g. sawers, r. r. eady, s. s. hasnain
Keywords: oxidoreductase, denitrification, nitrous oxide binding, catalysis, periplasmic electron gating, copper chemistry, calcium, copper
- 2iwh.pdb.
translation 30-jun-06 2iwh
Title: structure of yeast elongation factor 3 in complex with adpnp
Author: c. b. f. andersen, t. becker, m. blau, m. anand, m. halic, b. balar, t. mielke, t. boesen, j. s. pedersen, c. m. t. spahn, t. g. kinzy, g. r. andersen, r. beckmann
Keywords: translation, phosphorylation, elongation factor, nucleotide-binding, rna-binding, acetylation, atp-binding, rrna-binding
- 2iwk.pdb.
oxidoreductase 30-jun-06 2iwk
Cl Cu I Na Ca
Title: inhibitor-bound form of nitrous oxide reductase from achromobacter cycloclastes at 1.7 angstrom resolution
Author: k. paraskevopoulos, s. v. antonyuk, r. g. sawers, r. r. eady, s. s. hasnain
Keywords: oxidoreductase, denitrification, nitrous oxide binding, catalysis, periplasmic electron gating, copper chemistry, calcium, copper
- 2ix3.pdb.
translation 06-jul-06 2ix3
Title: structure of yeast elongation factor 3
Author: c. b. f. andersen, t. becker, m. blau, m. anand, m. halic, b. balar, t. mielke, t. boesen, j. s. pedersen, c. m. t. spahn, t. g. kinzy, g. r. andersen, r. beckmann
Keywords: translation, elongation factor, phosphorylation, nucleotide-binding, rrna-binding, rna-binding, acetylation, atp-binding
- 2iy6.pdb.
oxidoreductase 13-jul-06 2iy6
Cl Na
Title: 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound citrate
Author: e. inagaki, k. sakamoto, m. nishio, s. yokoyama
Keywords: citrate, dehyrogenase, oxidoreductase
- 2iyk.pdb.
hydrolase 18-jul-06 2iyk
Zn
Title: crystal structure of the upf2-interacting domain of nonsense mediated mrna decay factor upf1
Author: j. kadlec, d. guilligay, r. b. ravelli, s. cusack
Keywords: phosphorylation
- 2iyn.pdb.
transcription 19-jul-06 2iyn
Mg
Title: the co-factor-induced pre-active conformation in phob
Author: m. sola, d. l. drew, a. g. blanco, f. x. gomis-ruth, m. coll
Keywords: sensory transduction, phosphate regulation, two-component regulatory system, alpha/beta doubly wound fold
- 2j0p.pdb.
transport protein 04-aug-06 2j0p
Fe
Title: structure of the haem-chaperone proteobacteria-protein hems
Author: s. schneider, k. sharp, p. d. barker, m. paoli
Keywords: haem, iron, transport, ion transport, proteobacteria, iron transport, haem-binding protein
- 2j0q.pdb.
hydrolase 04-aug-06 2j0q
Mg
Title: the crystal structure of the exon junction complex at 3.2 a resolution
Author: f. bono, j. ebert, e. lorentzen, e. conti
Keywords: rna-binding, coiled coil, ejc, helicase, hydrolase, transport, acetylation
- 2j0r.pdb.
transport protein 04-aug-06 2j0r
Title: structure of the haem-chaperone proteobacteria-protein hems
Author: s. schneider, k. sharp, p. d. barker, m. paoli
Keywords: haem, iron, transport, ion transport, proteobacteria, iron transport, haem-binding protein, transport protein
- 2j12.pdb.
viral protein/receptor 08-aug-06 2j12
Ca
Title: ad37 fibre head in complex with car d1
Author: e. seiradake, h. lortat-jacob, o. billet, e. j. kremer, s. cusac
Keywords: palmitate, adenovirus, lipoprotein, glycoprotein
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