Recent PDB releases or updates: week of 25 August 2006
- 1gq7.pdb.
hydrolase 20-nov-01 1gq7
Mn
Title: proclavaminate amidino hydrolase from streptomyces clavuligerus
Author: j. m. elkins, i. j. clifton, h. hernandez, c. v. robinson, c. j. schofield, k. s. hewitson
Keywords: clavaminic, pah, arginase, antibiotic
- 1h80.pdb.
hydrolase 19-jan-01 1h80
Cl Na Ca
Title: 1,3-alpha-1,4-beta-d-galactose-4-sulfate- 3,6-anhydro-d-galactose-2-sulfate 4 galactohydrolase
Author: g. michel, l. chantalat, o. dideberg
Keywords: iota-carrageenan double helix degradation
- 1w8f.pdb.
lectin 21-sep-04 1w8f
Ca
Title: pseudomonas aeruginosa lectin ii (pa-iil) complexed with lacto-n-neo-fucopentaose v(lnpfv)
Author: s. perret, c. sabin, c. dumon, m. budova, c. gautier, o. galanina, s. ilia, n. bovin, m. nicaise, m. desmadril, n. gilboa-garber, m. wimmerova, e. p. mitchell, a. imberty
Keywords: pentassacharide,cystic firosis,pseudomonas aeruginosa,infection of lungs
- 1w8h.pdb.
lectin 15-sep-04 1w8h
Ca
Title: structure of pseudomonas aeruginosa lectin ii (pa-iil) complexed with lewisa trisaccharide
Author: s. perret, c. sabin, c. dumon, m. budova, c. gautier, o. galanina, s. ilia, n. bovin, m. nicaise, m. desmadril, n. gilboa-garber, m. wimmerova, e. p. mitchell, a. imberty
Keywords: lectin,sugar,lewis a,cystic fibrosis
- 1wcb.pdb.
immune system 10-nov-04 1wcb
I
Title: plp-dependent catalytic antibody 15a9 in complex with its hapten
Author: b. golinelli-pimpaneau, p. christen
Keywords: transamination, pyridoxal-phosphate, hapten, phosphopyridoxyl-l-lysine, immune system
- 1zxf.pdb.
toxin 08-jun-05 1zxf
(NMR, 20 structures)
Title: solution structure of a self-sacrificing resistance protein, calc from micromonospora echinospora
Author: s. singh, m. h. hager, c. zhang, b. r. griffith, m. s. lee, k. hallenga, j. l. markley, j. s. thorson, center for eukaryotic structural genomics (cesg)
Keywords: structural genomics, psi, protein structure initiative, center for eukaryotic structural genomics, cesg
- 2a24.pdb.
transcription 21-jun-05 2a24
(NMR, 20 structures)
Title: haddock structure of hif-2a/arnt pas-b heterodimer
Author: p. b. card, p. j. erbel, k. h. gardner
Keywords: hif, hypoxia, transcription, pas
- 2a4y.pdb.
signaling protein,transferase/inhibitor 30-jun-05 2a4y
(NMR, 20 structures)
Title: nmr structure analysis of the hematopoetic cell kinase sh3 domain complexed with an artificial high affinity ligand (pd1)
Author: h. schmidt, m. stoldt, t. tran, s. hoffmann, d. willbold
- 2adl.pdb.
dna binding protein 20-jul-05 2adl
(NMR)
Title: solution structure of the bacterial antitoxin ccda: implications for dna and toxin binding
Author: t. madl, l. vanmelderen, m. oberer, w. keller, l. khatai, k. zangger
- 2adn.pdb.
dna binding protein 20-jul-05 2adn
(NMR)
Title: solution structure of the bacterial antitoxin ccda: implications for dna and toxin binding
Author: t. madl, l. vanmelderen, m. oberer, w. keller, l. khatai, k. zangger
- 2akk.pdb.
structural genomics, unknown function 03-aug-05 2akk
(NMR, 20 structures)
Title: solution structure of phna-like protein rp4479 from rhodopseudomonas palustris
Author: b. wu, a. yee, t. a. ramelot, a. semesi, a. lemak, m. kennedy, a. edward, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
- 2asz.pdb.
transport protein 24-aug-05 2asz
Fe
Title: 1.07 a crystal structure of l133v mutant of nitrophorin 4 from rhodnius prolixus complexed with ammonia at ph 7.5
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferric heme
- 2at0.pdb.
transport protein 24-aug-05 2at0
Fe
Title: 1.00 a crystal structure of l133v mutant of nitrophorin 4 from rhodnius prolixus complexed with nitric oxide at ph 5.6
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferrous heme, nitric oxide
- 2at3.pdb.
transport protein 24-aug-05 2at3
Fe
Title: 1.00 a crystal structure of l123v/l133v mutant of nitrophorin 4 from rhodnius prolixus complexed with imidazole at ph 5.6
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferric heme, imidazole
- 2at4.pdb.
transport protein 24-aug-05 2at4
Fe
Title: 1.08 a crystal structure of nitrophorin 4 from rhodnius prolixus containing fe(iii) deuteroporphyrin ix complexed with ammonia at ph 7.5
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferric, heme analog, fe(iii) deuteroporphyrin ix
- 2at5.pdb.
transport protein 24-aug-05 2at5
Fe
Title: 1.22 a crystal structure of nitrophorin 4 from rhodnius prolixus containing fe(iii) deuteroporphyrin ix complexed with nitric oxide at ph 5.6
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferrous, heme analog, fe(iii) deuteroporphyrin ix, nitric oxide
- 2at6.pdb.
transport protein 24-aug-05 2at6
Fe
Title: 1.22 a crystal structure of nitrophorin 4 from rhodnius prolixus containing fe(iii) deuteroporphyrin ix complexed with water at ph 5.6
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferric, heme analog, fe(iii) deuteroporphyrin ix
- 2at7.pdb.
transport protein 24-aug-05 2at7
Fe
Title: 0.98 a crystal structure of nitrophorin 4 from rhodnius prolixus containing fe(iii) 2,4 dimethyl deuteroporphyrin ix complexed with ammonia at ph 7.5
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferric, heme analog, fe(iii) 2,4 dimethyl deuteroporphyrin ix
- 2at8.pdb.
transport protein 24-aug-05 2at8
Fe
Title: 0.96 a crystal structure of nitrophorin 4 from rhodnius prolixus containing fe(iii) 2,4 dimethyl deuteroporphyrin ix complexed with nitric oxide at ph 5.6
Author: a. m. amoia, w. r. montfort
Keywords: beta barrel, ferrous, heme analog, fe(iii) 2,4 dimethyl deuteroporphyrin ix
- 2aw9.pdb.
oxidoreductase 31-aug-05 2aw9
Mn
Title: superoxide dismutase with manganese from deinococcus radiodurans
Author: s. tanaka, m. r. sawaya, s. chan, l. j. perry
- 2axq.pdb.
oxidoreductase 05-sep-05 2axq
Title: apo histidine-tagged saccharopine dehydrogenase (l-glu forming) from saccharomyces cerevisiae
Author: b. andi, p. f. cook, a. h. west
Keywords: saccharopine reductase fold (domain ii), alpha/beta protein, alpha-aminoadipate pathway, fungal lysine biosynthesis
- 2ayb.pdb.
transcription/dna 07-sep-05 2ayb
Title: crystal structure of hpv6a e2 dna binding domain bound to a 16 base pair dna target
Author: e. hooley, r. l. brady, k. gaston
Keywords: double helix, beta barrel
- 2aye.pdb.
transcription 07-sep-05 2aye
Title: crystal structure of the unliganded e2 dna binding domain from hpv6a
Author: e. hooley, r. l. brady, k. gaston
- 2ayg.pdb.
transcription/dna 07-sep-05 2ayg
Title: crystal structure of hpv6a e2 dna binding domain bound to an 18 base pair dna target
Author: e. hooley, r. l. brady, k. gaston
Keywords: double helix, protein-dna complex
- 2ayj.pdb.
translation 07-sep-05 2ayj
Zn
(NMR, 20 structures)
Title: solution structure of 50s ribosomal protein l40e from sulfolobus solfataricus
Author: b. wu, a. yee, j. lukin, a. lemak, a. semesi, t. ramelot, m. kennedy, a. edward, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2bk8.pdb.
ig domain 11-feb-05 2bk8
Title: m1 domain from titin
Author: s. mueller, i. kursula, m. wilmanns
Keywords: titin, m-band, structural protein, muscle, antibody
- 2bmk.pdb.
immune system 14-mar-05 2bmk
I
Title: fab fragment of plp-dependent catalytic antibody 15a9 in complex with phosphopyridoxyl-d-alanine
Author: b. golinelli-pimpaneau, p. christen
Keywords: transamination, pyridoxal-phosphate, hapten, phosphopyridoxyl-l-lysine, immune system
- 2bq2.pdb.
nucleic acid 06-feb-05 2bq2
(NMR, 2 structures)
Title: solution structure of the dna duplex acgcgu-na with a 2' amido-linked nalidixic acid residue at the 3' terminal nucleotide
Author: k. siegmund, s. maheshwary, s. narayanan, w. connors, m. richert
Keywords: disrupted terminal basepairs, dna, quinolone, synthetic hybrid, dna complex
- 2bv8.pdb.
photosynthesis 04-oct-04 2bv8
Title: the crystal structure of phycocyanin from gracilaria chilensis.
Author: c. contreras-martel, j. martinez-oyanedel, g. poo-caama, c. bruna, m. bunster
Keywords: phycobilisome, phycobiliprotein, phycocyanin, phycocyanobilin, photosynthesis, chloroplast
- 2bxv.pdb.
oxidoreductase 26-jul-05 2bxv
F
Title: dual binding mode of a novel series of dhodh inhibitors
Author: r. baumgartner, m. walloschek, m. karlik, a. gotschlich, s. tasler, j. mies, j. leban
Keywords: dual binding mode, virtual high-throughput screening, rheumatoid arthritis oxidoreductase
- 2bz2.pdb.
transcription regulation 08-aug-05 2bz2
(NMR, 20 structures)
Title: solution structure of nelf e rrm
Author: k. schweimer, j. n. rao, l. neumann, p. rosch, b. m. wohrl
Keywords: rna recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor, rna- binding, transcription, transcription regulation
- 2c7t.pdb.
transferase 29-nov-05 2c7t
Title: crystal structure of the plp-bound form of btrr, a dual functional aminotransferase involved in butirosin biosynthesis.
Author: b. popovic, x. tang, d. y. chirgadze, f. huang, t. l. blundell, j. b. spencer
Keywords: smat, butirosin, aminoglycoside antibiotics, transferase
- 2c81.pdb.
transferase 30-nov-05 2c81
Title: crystal structures of the plp- and pmp-bound forms of btrr, a dual functional aminotransferase involved in butirosin biosynthesis.
Author: b. popovic, x. tang, d. y. chirgadze, f. huang, t. l. blundell, j. b. spencer
Keywords: smat, butirosin, aminoglycoside antibiotics, transferase
- 2c9x.pdb.
oxidoreductase 15-dec-05 2c9x
Mo Fe
Title: sulfite dehydrogenase from starkeya novella y236f mutant
Author: s. bailey, u. kappler, c. feng, m. honeychurch, p. bernhardt, g. tollin, j. enemark
Keywords: molybdopterin, c-type cytochrome, heme, mutant, oxidoreductase
- 2ca9.pdb.
transcriptional regulation 20-dec-05 2ca9
Title: apo-nikr from helicobacter pylori in closed trans- conformation
Author: c. dian, k. schauer, u. kapp, s. m. mcsweeney, a. labigne, l. terradot
Keywords: transcription regulator, ribbon-helix-helix, acidic-adaptive response, transcriptional regulation, dna-binding, hypothetical protein, metal-binding, nickel
- 2cad.pdb.
transcriptional regulation 20-dec-05 2cad
Ni
Title: nikr from helicobacter pylori in closed trans-conformation and nickel bound to 2f, 2x and 2i sites.
Author: c. dian, k. schauer, u. kapp, s. m. mcsweeney, a. labigne, l. terradot
Keywords: transcription regulator, ribbon-helix-helix, acidic-adaptive response, transcriptional regulation, dna-binding, hypothetical protein, metal-binding, nickel
- 2caj.pdb.
transcriptional regulation 21-dec-05 2caj
Cl Ni
Title: nikr from helicobacter pylori in closed trans-conformation and nickel bound to 4 intermediary sites
Author: c. dian, k. schauer, u. kapp, s. m. mcsweeney, a. labigne, l. terradot
Keywords: transcription regulator, ribbon-helix-helix, acidic-adaptive response, transcriptional regulation, dna-binding, hypothetical protein, metal-binding, nickel
- 2cdu.pdb.
oxidoreductase 30-jan-06 2cdu
Title: the crystal structure of water-forming nad(p)h oxidase from lactobacillus sanfranciscensis
Author: g. t. lountos, r. jiang, w. b. wellborn, t. l. thaler, a. s. bommarius, a. m. orville
Keywords: flavoenzyme, oxidoreductase
- 2ceo.pdb.
transport 08-feb-06 2ceo
I
Title: thyroxine-binding globulin complex with thyroxine
Author: a. zhou, z. wei, r. j. read, r. w. carrell
Keywords: serpin, hormone transport, thyroxine, disease mutation, glycoprotein, polymorphism, transport
- 2cfa.pdb.
transferase 17-feb-06 2cfa
Title: structure of viral flavin-dependant thymidylate synthase thyx
Author: s. graziani, j. bernauer, s. skouloubris, m. graille, c. -z. zhou, c. marchand, p. decottignies, h. van tilbeurgh, h. myllykallio, u. liebl
Keywords: thyx, fdts, tscp, flavin dependent thymidylate synthase fad, flavoprotein, nucleotide biosynthesis, methyltransferase, transferase
- 2cfo.pdb.
ligase 22-feb-06 2cfo
Title: non-discriminating glutamyl-trna synthetase from thermosynechococcus elongatus in complex with glu
Author: j. o. schulze, d. nickel, w. -d. schubert, d. jahn, d. w. heinz
Keywords: aminoacyl-trna synthetase, atp-binding, nucleotide- binding, protein biosynthesis
- 2chu.pdb.
binding protein 16-mar-06 2chu
Zn Fe
Title: ceue in complex with mecam
Author: a. muller, a. j. wilkinson, k. s. wilson, a. k. duhme-klair
Keywords: iron, campylobacter jejuni, mecam, self assembly, siderophore, binding protein
- 2cin.pdb.
transferase 24-mar-06 2cin
Title: lysine aminotransferase from m. tuberculosis in the internal aldimine form
Author: s. m. tripathi, r. ramachandran
Keywords: pyridoxal phosphate, plp, rv3290c, transferase, aminotransferase, lysine amino transferase, mycobacterium tuberculosis
- 2civ.pdb.
oxidoreductase 26-mar-06 2civ
Mn Br Fe
Title: chloroperoxidase bromide complex
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2ciw.pdb.
oxidoreductase 26-mar-06 2ciw
I Mn Fe
Title: chloroperoxidase iodide complex
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2cix.pdb.
oxidoreductase 26-mar-06 2cix
Mn Br Fe
Title: chloroperoxidase complexed with cyclopentanedione
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2ciy.pdb.
oxidoreductase 26-mar-06 2ciy
Mn Br Fe
Title: chloroperoxidase complexed with cyanide and dmso
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2ciz.pdb.
oxidoreductase 26-mar-06 2ciz
Mn Br Fe
Title: chloroperoxidase complexed with acetate
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2cj0.pdb.
oxidoreductase 26-mar-06 2cj0
Mn Fe
Title: chloroperoxidase complexed with nitrate
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2cj1.pdb.
oxidoreductase 26-mar-06 2cj1
Mn Fe
Title: chloroperoxidase complexed with formate (ethylene glycol cryoprotectant)
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2cj2.pdb.
oxidoreductase 26-mar-06 2cj2
Mn Fe
Title: chloroperoxidase complexed with formate (sugar cryoprotectant)
Author: k. kuhnel, w. blankenfeldt, j. terner, i. schlichting
Keywords: iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding, oxidoreductase
- 2cjd.pdb.
transferase 24-mar-06 2cjd
Title: lysine aminotransferase from m. tuberculosis in external aldimine form
Author: s. m. tripathi, r. ramachandran
Keywords: pyridoxal phosphate, plp, rv3290c, transferase, aminotransferase, lysine amino transferase, mycobacterium tuberculosis
- 2cjg.pdb.
transferase 01-apr-06 2cjg
Title: lysine aminotransferase from m. tuberculosis in bound pmp form
Author: s. m. tripathi, r. ramachandran
Keywords: pyridoxal phosphate, plp, rv3290c, transferase, aminotransferase, lysine amino transferase, mycobacterium tuberculosis
- 2cjh.pdb.
transferase 03-apr-06 2cjh
Title: lysine aminotransferase from m. tuberculosis in the internal aldimine form with bound substrate 2- ketoglutarate
Author: s. m. tripathi, r. ramachandran
Keywords: pyridoxal phosphate, plp, rv3290c, transferase, aminotransferase, lysine amino transferase, mycobacterium tuberculosis
- 2cm2.pdb.
hydrolase 04-may-06 2cm2
Title: structure of protein tyrosine phosphatase 1b (p212121)
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm3.pdb.
hydrolase 04-may-06 2cm3
Ca
Title: structure of protein tyrosine phosphatase 1b (c2)
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm7.pdb.
hydrolase 04-may-06 2cm7
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cm8.pdb.
hydrolase 04-may-06 2cm8
Mg
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphatase,acetylation,oxidation, protein phosphatase,endoplasmic reticulum, polymorphism
- 2cma.pdb.
hydrolase 04-may-06 2cma
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cmb.pdb.
hydrolase 04-may-06 2cmb
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2cmc.pdb.
hydrolase 04-may-06 2cmc
F
Title: structural basis for inhibition of protein tyrosine phosphatase 1b by isothiazolidinone heterocyclic phosphonate mimetics
Author: p. j. ala, l. gonneville, m. c. hillman, m. becker-pasha, m. wei, b. g. reid, r. klabe, e. w. yue, b. wayland, b. douty, a. p. combs, p. polam, z. wasserman, m. bower, t. c. burn, g. f. hollis, r. wynn
Keywords: phosphorylation, protein phosphatase, endoplasmic reticulum, oxidation, hydrolase, acetylation, phosphatase
- 2czh.pdb.
hydrolase 13-jul-05 2czh
Title: crystal structure of human myo-inositol monophosphatase 2 (impa2) with phosphate ion (orthorhombic form)
Author: k. ito, r. arai, t. kamo-uchikubo, t. ohnishi, h. ohba, t. yoshikawa, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: bipolar disorder, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2czi.pdb.
hydrolase 13-jul-05 2czi
Ca
Title: crystal structure of human myo-inositol monophosphatase 2 (impa2) with calcium and phosphate ions
Author: r. arai, k. ito, t. ohnishi, h. ohba, t. yoshikawa, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: bipolar disorder, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2czk.pdb.
hydrolase 13-jul-05 2czk
Title: crystal structure of human myo-inositol monophosphatase 2 (impa2) (trigonal form)
Author: r. arai, k. ito, k. hanawa-suetsugu, t. ohnishi, h. ohba, t. yoshikawa, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: bipolar disorder, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2deq.pdb.
ligase 16-feb-06 2deq
Title: crystal structure of biotin protein ligase from pyrococcus horikoshii ot3 in complex with biotinyl-5'-amp, k111g mutation
Author: b. bagautdinov, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: dimer, x-ray diffraction, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2dga.pdb.
hydrolase 10-mar-06 2dga
Title: crystal structure of hexameric beta-glucosidase in wheat
Author: m. sue, k. yamazaki, t. miyamoto, s. yajima
- 2dhh.pdb.
membrane protein 23-mar-06 2dhh
Title: crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Author: s. murakami, r. nakashima, e. yamashita, t. matsumoto
Keywords: membrane protein, multidrug efflux, drug resistance, transporter, exporter, antiporter
- 2dr6.pdb.
membrane protein 08-jun-06 2dr6
Title: crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Author: s. murakami, r. nakashima, e. yamashita, t. matsumoto
Keywords: membrane protein, multidrug efflux, drug resistance, transporter, exporter, antiporter
- 2drd.pdb.
membrane protein 08-jun-06 2drd
Title: crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Author: s. murakami, r. nakashima, e. yamashita, t. matsumoto
Keywords: membrane protein, multidrug efflux, drug resistance, transporter, exporter, antiporter
- 2dsa.pdb.
transferase 24-jun-06 2dsa
Title: ternary complex of bphk, a bacterial gst
Author: e. i. tocheva, m. e. p. murphy
- 2dsp.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsp
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2dsq.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsq
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2dsr.pdb.
protein binding/hormone/growth factor 05-jul-06 2dsr
Title: structural basis for the inhibition of insulin-like growth factors by igf binding proteins
Author: t. sitar, g. m. popowicz, i. siwanowicz, r. huber, t. a. holak
Keywords: igfbp, insulin
- 2evy.pdb.
ribonucleic acid 01-nov-05 2evy
(NMR, 18 structures)
Title: gnya tetranucleotide loops found in poliovirus oril by in vivo selex (un)expectedly form a ynmg-like structure
Author: w. j. g. melchers, j. zoll, m. tessari, d. v. bakhmutov, a. p. gmyl, v. i. agol, h. a. heus
Keywords: 5'ntr, cloverleaf, gnya tetranucleoitde loop
- 2f9t.pdb.
transferase 06-dec-05 2f9t
Se
Title: structure of the type iii coaa from pseudomonas aeruginosa
Author: r. leonardi, m. k. yun, s. chohnan, s. w. white, c. o. rock, s. jackowski
Keywords: coaa
- 2f9w.pdb.
transferase 06-dec-05 2f9w
Se
Title: structure of the type iii coaa from pseudomonas aeruginosa
Author: r. leonardi, m. k. yun, s. chohnan, s. w. white, c. o. rock, s. jackowski
Keywords: coaa, pan, pantothenate
- 2fc2.pdb.
oxidoreductase 10-dec-05 2fc2
Fe
Title: no-heme complex in a bacterial nitric oxide synthase. an fe(iii)-no may cause nitrosation.
Author: k. pant, b. r. crane
Keywords: no-heme complex, nitric oxide synthase
- 2ffk.pdb.
virus/viral protein/cytokine 19-dec-05 2ffk
(NMR, minimized average structure)
Title: solution structure of the complex between poxvirus-encoded cc chemokine inhibitor vcci and human mip-1beta, minimized average structure
Author: l. zhang
Keywords: chemokine, pox virus, viral cc chemokine inhibitor
- 2fin.pdb.
virus/viral protein/cytokine 29-dec-05 2fin
(NMR, 15 structures)
Title: solution structure of the complex between poxvirus-encoded cc chemokine inhibitor vcci and human mip-1beta, ensemble structure
Author: l. zhang
Keywords: chemokine, pox virus, viral cc chemokine inhibitor
- 2fmd.pdb.
sugar binding protein 09-jan-06 2fmd
Mn Ca
Title: structural basis of carbohydrate recognition by bowringia milbraedii seed agglutinin
Author: l. buts, a. garcia-pino, l. wyns, r. loris
Keywords: beta sandwich, protein-carbohydrate complex, lectin
- 2fuf.pdb.
dna binding protein 26-jan-06 2fuf
Se
Title: crystal structure of the sv40 large t antigen origin- binding domain
Author: g. meinke, p. a. bullock, a. bohm
Keywords: dna replication
- 2g31.pdb.
signaling protein 17-feb-06 2g31
(NMR, 20 structures)
Title: human nogo-a functional domain: nogo60
Author: m. f. li, j. x. liu, j. x. song
Keywords: helix
- 2gdr.pdb.
transferase 16-mar-06 2gdr
Title: crystal structure of a bacterial glutathione transferase
Author: e. i. tocheva, p. d. fortin, l. d. eltis, m. e. p. murphy
Keywords: each monomer contains two domains, n- term domain is mixed beta sheets and alpha helices, c-term domain is alpha helical
- 2gfe.pdb.
membrane protein 21-mar-06 2gfe
Zn
Title: crystal structure of the glur2 a476e s673d ligand binding core mutant at 1.54 angstroms resolution
Author: m. l. mayer
- 2gg4.pdb.
transferase 23-mar-06 2gg4
Title: cp4 epsp synthase (unliganded)
Author: e. schonbrunn, t. funke
- 2gg6.pdb.
transferase 23-mar-06 2gg6
Title: cp4 epsp synthase liganded with s3p
Author: e. schonbrunn, t. funke
- 2gga.pdb.
transferase 23-mar-06 2gga
Title: cp4 epsp synthase liganded with s3p and glyphosate
Author: e. schonbrunn, t. funke
- 2ggd.pdb.
transferase 23-mar-06 2ggd
Title: cp4 epsp synthase ala100gly liganded with s3p and glyphosate
Author: e. schonbrunn, t. funke
- 2gic.pdb.
virus/viral protein/rna 28-mar-06 2gic
U
Title: crystal structure of a vesicular stomatitis virus nucleocapsid-rna complex
Author: t. j. green, x. zhang, g. w. wertz, m. luo
Keywords: protein-rna complex, negative strand virus
- 2gkc.pdb.
ligand binding protein 01-apr-06 2gkc
Ho I
(NMR, 10 structures)
Title: structural insight into self-sacrifice mechanism of enediyne resistance
Author: s. singh, j. s. thorson, j. l. markley, m. h. hager, c. zhang, m. s. lee
- 2gkd.pdb.
toxin/dna 01-apr-06 2gkd
(NMR)
Title: structural insight into self-sacrifice mechanism of enediyne resistance
Author: s. singh, j. s. thorson
- 2gnv.pdb.
oxygen storage/transport 11-apr-06 2gnv
Fe
Title: crystal structure of non-symbiotic plant hemoglobin from rice, b10 mutant f40l
Author: j. a. hoy
Keywords: globin, heme, iron, hemoglobin, hexacoordinate, nonsymbiotic, rice
- 2gsn.pdb.
hydrolase 26-apr-06 2gsn
Zn
Title: structure of xac nucleotide pyrophosphatase/phosphodiesterase
Author: j. g. zalatan, t. d. fenn, a. t. brunger, d. herschlag
Keywords: npp
- 2gso.pdb.
hydrolase 26-apr-06 2gso
Zn V
Title: structure of xac nucleotide pyrophosphatase/phosphodiesterase in complex with vanadate
Author: j. g. zalatan, t. d. fenn, a. t. brunger, d. herschlag
Keywords: npp
- 2gsu.pdb.
hydrolase 26-apr-06 2gsu
Zn
Title: structure of xac nucleotide pyrophosphatase/phosphodiesterase in complex with amp
Author: j. g. zalatan, t. d. fenn, a. t. brunger, d. herschlag
Keywords: npp
- 2gut.pdb.
transcription 01-may-06 2gut
(NMR, 15 structures)
Title: solution structure of the trans-activation domain of the human co-activator arc105
Author: b. w. vought, z. -y. jim sun, s. g. hyberts, g. wagner, a. m. naar
Keywords: 3 helical bundle
- 2gxq.pdb.
hydrolase 09-may-06 2gxq
Title: hera n-terminal domain in complex with amp, crystal form 1
Author: m. g. rudolph, d. klostermeier
Keywords: atomic resolution, amp complex, ribosome biogenesis, thermophilic
- 2gxs.pdb.
hydrolase 09-may-06 2gxs
Ca
Title: hera n-terminal domain in complex with amp, crystal form 2
Author: m. g. rudolph, d. klostermeier
Keywords: atomic resolution, amp complex, ribosome biogenesis, thermophilic
- 2gxu.pdb.
hydrolase 09-may-06 2gxu
Title: hera n-terminal domain in complex with orthophosphate, crystal form 1
Author: m. g. rudolph, d. klostermeier
Keywords: atomic resolution, amp complex, ribosome biogenesis, thermophilic
- 2gyu.pdb.
hydrolase 10-may-06 2gyu
Title: crystal structure of mus musculus acetylcholinesterase in complex with hi-6
Author: y. p. pang, m. boman, e. artursson, c. akfur, s. lundberg
Keywords: ache, oxime, reactivator, hi-6,
- 2gyv.pdb.
hydrolase 10-may-06 2gyv
Title: crystal structure of mus musculus acetylcholinesterase in complex with ortho-7
Author: y. p. pang, m. boman, e. artursson, c. akfur, s. lundberg
Keywords: ache, oxime, reactivator, ortho-7
- 2gyw.pdb.
hydrolase 10-may-06 2gyw
Title: crystal structure of mus musculus acetylcholinesterase in complex with obidoxime
Author: y. p. pang, m. boman, e. artursson, c. akfur, s. lundberg
Keywords: ache, oxime, reactivator, obidoxime
- 2h0b.pdb.
cell adhesion 14-may-06 2h0b
Ca Se
Title: crystal structure of the second lns/lg domain from neurexin 1 alpha
Author: l. r. sheckler, l. henry, s. sugita, t. c. sudhof, g. rudenko
- 2h26.pdb.
immune system 18-may-06 2h26
Title: human cd1b in complex with endogenous phosphatidylcholine and spacer
Author: l. f. garcia-alles, l. maveyraud, a. t. vallina, v. guillet, l. mourey
Keywords: endogenous ligand, phosphatidylcholine, mhc, antigen presentation, glycoprotein
- 2h27.pdb.
transferase/dna 18-may-06 2h27
Title: crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna
Author: w. j. lane, s. a. darst
Keywords: helix-turn-helix, double helix
- 2h30.pdb.
oxidoreductase 20-may-06 2h30
Se
Title: crystal structure of the n-terminal domain of pilb from neisseria gonorrhoeae
Author: n. brot, j. f. collet, l. c. johnson, t. j. jonsson, h. weissbach, w. t. lowther
Keywords: methionine sulfoxide, thiol-disulfide exchange
- 2h3k.pdb.
protein binding 22-may-06 2h3k
(NMR, 20 structures)
Title: solution structure of the first neat domain of isdh
Author: r. m. pilpa, e. a. fadeev, v. a. villareal, m. a. wong, m. phillips, r. t. clubb
Keywords: isdh, hara
- 2h5o.pdb.
luminescent protein 26-may-06 2h5o
Mg
Title: crystal structure of morange
Author: x. shu, s. j. remington
Keywords: novel 5-membered ring, three-ring-chromophore
- 2h5p.pdb.
luminescent protein 26-may-06 2h5p
Title: crystal structure of mstrawberry at ph 9.5
Author: x. shu, s. j. remington
- 2h5q.pdb.
luminescent protein 26-may-06 2h5q
Title: crystal structure of mcherry
Author: x. shu, s. j. remington
- 2h5r.pdb.
luminescent protein 26-may-06 2h5r
Title: crystal structure of mstrawberry at ph 10.5
Author: x. shu, s. j. remington
- 2h84.pdb.
biosynthetic protein, transferase 06-jun-06 2h84
Title: crystal structure of the c-terminal type iii polyketide synthase (pks iii) domain of 'steely1' (a type i/iii pks hybrid from dictyostelium)
Author: m. b. austin, j. p. noel
Keywords: type iii polyketide synthase, pks, chalcone- stilbene synthase superfamily, type i pks, type i fatty acid synthase, fas
- 2h85.pdb.
virus/viral protein 06-jun-06 2h85
Title: crystal structure of nsp 15 from sars
Author: s. ricagno, m. p. egloff, r. ulferts, b. coutard, d. nurizzo, v. campanacci, c. cambillau, j. ziebuhr, b. canard
Keywords: sars, rna, nsp
- 2h8q.pdb.
luminescent protein 07-jun-06 2h8q
Title: crystal structure of a redshifted mutant (k83m) of the red fluorescent protein drfp583/dsred
Author: c. a. yarbrough, s. j. remington
Keywords: fluorescent, red shift, gfp, dsred, bioluminescence
- 2h8s.pdb.
toxin 07-jun-06 2h8s
(NMR, 20 structures)
Title: solution structure of alpha-conotoxin vc1.1
Author: r. j. clark, h. fischer, s. t. nevin, d. j. adams, d. j. craik
Keywords: alpha-helix, disulfide bonds, amidated c- terminus
- 2hbj.pdb.
hydrolase, gene regulation 14-jun-06 2hbj
Title: structure of the yeast nuclear exosome component, rrp6p, reveals an interplay between the active site and the hrdc domain
Author: s. f. midtgaard, j. assenholt, a. t. jonstrup, l. b. van, t. h. jensen, d. e. brodersen
Keywords: rna metabolism, rna surveillance, rna processing
- 2hbk.pdb.
hydrolase, gene regulation 14-jun-06 2hbk
Mn
Title: structure of the yeast nuclear exosome component, rrp6p, reveals an interplay between the active site and the hrdc domain; protein in complex with mn
Author: s. f. midtgaard, j. assenholt, a. t. jonstrup, l. b. van, t. h. jensen, d. e. brodersen
Keywords: rna metabolism, rna surveillance, rna processing
- 2hbl.pdb.
hydrolase, gene regulation 14-jun-06 2hbl
Mn Zn
Title: structure of the yeast nuclear exosome component, rrp6p, reveals an interplay between the active site and the hrdc domain; protein in complex with mn, zn, and amp
Author: s. f. midtgaard, j. assenholt, a. t. jonstrup, l. b. van, t. h. jensen, d. e. brodersen
Keywords: rna metabolism, rna surveillance, rna processing
- 2hbm.pdb.
hydrolase, gene regulation 14-jun-06 2hbm
Mn Zn
Title: structure of the yeast nuclear exosome component, rrp6p, reveals an interplay between the active site and the hrdc domain; protein in complex with mn, zn, and ump
Author: s. f. midtgaard, j. assenholt, a. t. jonstrup, l. b. van, t. h. jensen, d. e. brodersen
Keywords: rna metabolism, rna surveillance, rna processing
- 2hct.pdb.
hydrolase 18-jun-06 2hct
Title: acidic residues at the active sites of cd38 and adp-ribosyl cyclase determine naapd synthesis and hydrolysis activities
Author: q. liu, i. a. kriksunov, q. hao, r. graeff, h. c. lee
Keywords: alpha bundle
- 2hcz.pdb.
allergen 19-jun-06 2hcz
Title: crystal structure of expb1 (zea m 1), a beta-expansin and group-1 pollen allergen from maize
Author: n. h. yennawar, d. j. cosgrove
- 2hd5.pdb.
hydrolase 20-jun-06 2hd5
Zn
Title: usp2 in complex with ubiquitin
Author: m. renatus, m. kroemer
Keywords: cysteine protease, substrate enzyme complex
- 2hf1.pdb.
transferase 22-jun-06 2hf1
Zn Se
Title: crystal structure of the putative tetraacyldisaccharide-1-p 4-kinase from chromobacterium violaceum. nesg target cvr39.
Author: s. m. vorobiev, m. abashidze, j. seetharaman, c. x. chen, m. jiang, k. cunningham, l. c. ma, r. xiao, t. acton, t. g. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: lpxk, lipid a biosynthesis, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2hfd.pdb.
structural genomics, unknown function 23-jun-06 2hfd
(NMR, 20 structures)
Title: nmr structure of protein hydrogenase-1 operon protein hyae from escherichia coli: northeast structural genomics consortium target er415
Author: k. k. singarapu, g. liu, a. eletsky, d. parish, h. s. atreya, d. xu, h. janjua, k. cunningham, l. c. ma, r xiao, j. liu, m. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: nesgc, alfa-beta, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2hg7.pdb.
structural genomics, unknown function 26-jun-06 2hg7
(NMR, 20 structures)
Title: solution nmr structure of phage-like element pbsx protein xkdw, northeast structural genomics consortium target sr355
Author: g. liu, d. parish, d. xu, h. atreya, d. sukumaran, c. k. ho, m. jiang, k. cunningham, l. -c. ma, r. xiao, j. liu, m. baran, g. v. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: dimer, gft nmr, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2hgc.pdb.
structural genomics, unknown function 26-jun-06 2hgc
(NMR, 20 structures)
Title: solution nmr structure of the yjcq protein from bacillus subtilis. northeast structural genomics target sr346.
Author: p. rossi, j. r. cort, ho c. k. , h. janjua, k. cunningham, l. -c. ma, r. xiao, j. liu, m. baran, g. v. t. swapna, t. b. acton, b. rost, m. a. kennedy, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: nmr structure, autostructure, nesg, psi-2, northeast structural genomics consortium, protein structure initiative
- 2hh6.pdb.
structural genomics, unknown function 27-jun-06 2hh6
Se
Title: crystal structure of bh3980 (10176605) from bacillus halodurans at 2.04 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: bh3980, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2hh8.pdb.
structural genomics, unknown function 28-jun-06 2hh8
(NMR, 20 structures)
Title: solution nmr structure of the ydfo protein from escherichia coli. northeast structural genomics target er251.
Author: p. rossi, j. r. cort, c. k. ho, h. janjua, k. cunningham, l. -c. ma, r. xiao, j. liu, m. baran, g. v. t. swapna, t. b. acton, b. rost, m. a. kennedy, g. t. montelione, northeast structural genomics consortium (nesg)
Keywords: nmr structure, autostructure, nesg, psi-2, northeast structural genomics consortium, protein structure initiative
- 2hi0.pdb.
hydrolase 28-jun-06 2hi0
Cl Na Se
Title: crystal structure of putative phosphoglycolate phosphatase (yp_619066.1) from lactobacillus delbrueckii subsp. bulgaricus atcc baa-365 at 1.51 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2hiw.pdb.
transferase 29-jun-06 2hiw
F
Title: crystal structure of inactive conformation abl kinase catalytic domain complexed with type ii inhibitor
Author: c. lee
- 2hj3.pdb.
oxidoreductase 30-jun-06 2hj3
Title: structure of the arabidopsis thaliana erv1 thiol oxidase
Author: e. vitu, d. fass
Keywords: flavin adenine dinucleotide
- 2hle.pdb.
transferase/transferase receptor 06-jul-06 2hle
Title: structural and biophysical characterization of the ephb4- ephrinb2 protein protein interaction and receptor specificity
Author: j. e. chrencik, a. brooun, p. kuhn
Keywords: receptor tryosine kinase, bi- directional cell signaling
- 2hoy.pdb.
isomerase 17-jul-06 2hoy
Title: inter-subunit signaling in gsam
Author: j. stetefeld
- 2hoz.pdb.
isomerase 17-jul-06 2hoz
Title: inter-subunit signaling in gsam
Author: j. stetefeld
- 2hp1.pdb.
isomerase 17-jul-06 2hp1
Title: inter-subunit signaling in gsam
Author: j. stetefeld
- 2hp2.pdb.
isomerase 17-jul-06 2hp2
Title: inter-subunit signaling in gsam
Author: j. stetefeld
- 2hp7.pdb.
signaling protein 17-jul-06 2hp7
Title: structure of flim provides insight into assembly of the switch complex in the bacterial flagella motor
Author: b. r. crane, s. park, b. lowder, a. m. bilwes, d. f. blair
Keywords: flagellar switch complex
- 2hpy.pdb.
signaling protein 18-jul-06 2hpy
Hg Zn
Title: crystallographic model of lumirhodopsin
Author: h. nakamichi, t. okada
Keywords: visual pigment
- 2hrx.pdb.
structural genomics, unknown function 20-jul-06 2hrx
Se
Title: three dimensional structure of conserved hypothetical protein from corynebacterium diphtheriae at the resolution 1.9 a. northeast structural genomics consortium target cdr13.
Author: a. p. kuzin, m. su, s. jayaraman, c. k. ho, h. janjua, k. cunningham, l. c. ma, r. xiao, j. liu, m. baran, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2hrz.pdb.
structural genomics, unknown function 20-jul-06 2hrz
Se
Title: the crystal structure of the nucleoside-diphosphate-sugar epimerase from agrobacterium tumefaciens
Author: r. zhang, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: agrobacterium tumefaciens, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hs5.pdb.
transcription regulator 21-jul-06 2hs5
Se
Title: structural genomics, the crystal structure of a putative transcriptional regulator gntr from rhodococcus sp. rha1
Author: k. tan, t. skarina, a. onopriyenko, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, gntr, rhodococcus sp. rha1, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hv6.pdb.
unknown function 27-jul-06 2hv6
Mg
Title: crystal structure of the phosphotyrosyl phosphatase activator
Author: y. chao, p. d. jeffrey, y. shi
Keywords: phosphatase, pp2a, phosphatase specificity
- 2hv7.pdb.
unknown function 27-jul-06 2hv7
Title: crystal structure of phosphotyrosyl phosphatase activator bound to atpgammas
Author: y. chao, j. d. jeffrey, y. shi
Keywords: pp2a, phosphatase, phosphatase specificity
- 2hvg.pdb.
lyase 28-jul-06 2hvg
Se
Title: crystal structure of adenylosuccinate lyase from plasmodium vivax
Author: a. k. wernimont, a. dong, j. lew, g. a. wasney, m. vedadi, h. ren, z. alam, w. qiu, i. kozieradzki, j. weigelt, m. sundstrom, a. m. edwards, c. h. arrowsmith, a. bochkarev, r. hui, t. hills, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2hw5.pdb.
lyase 31-jul-06 2hw5
Mg
Title: the crystal structure of human enoyl-coenzyme a (coa) hydratase short chain 1, echs1
Author: a. p. turnbull, e. salah, f. niesen, j. debreczeni, e. ugochukwu, a. c. w. pike, k. kavanagh, o. gileadi, f. gorrec, c. umeano, f. von delft, j. weigelt, a. edwards, c. arrowsmith, m. sundstrom, u. oppermann, structural genomics consortium (sgc)
Keywords: hydratase/isomerase superfamily, beta-oxidation, coa, enoyl-coa hydratase, lyase, structural genomics, structural genomics consortium, sgc
- 2hxo.pdb.
transcription 03-aug-06 2hxo
Se
Title: structure of the transcriptional regulator sco7222, a tetr from streptomyces coelicolor
Author: a. u. singer, t. skarina, r. g. zhang, o. onopriyenko, a. m. edwards, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: tetr transcriptional regulator, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hxp.pdb.
hydrolase 03-aug-06 2hxp
Title: crystal structure of the human phosphatase (dusp9)
Author: m. madegowda, s. eswaramoorthy, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: human phosphatase, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2hxr.pdb.
transcription 03-aug-06 2hxr
Se
Title: structure of the ligand binding domain of e. coli cynr, a transcriptional regulator controlling cyanate metabolism
Author: a. u. singer, m. e. cuff, e. evdokimova, o. kagan, a. joachimiak, a. m. edwards, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2hxx.pdb.
hydrolase inhibitor 04-aug-06 2hxx
Title: aminotryptophan barstar
Author: m. rubini, s. lepthien, r. golbik, n. budisa
Keywords: barstar, genetic code, protein folding, stability
- 2hza.pdb.
metal binding protein 08-aug-06 2hza
Ni Se
Title: nickel-bound full-length escherichia coli nikr
Author: e. r. schreiter, c. l. drennan
Keywords: ribbon-helix-helix, transcription factor
- 2hzb.pdb.
structural genomics, unknown function 08-aug-06 2hzb
Se
Title: x-ray structure of the hypothetical upf0052 protein bh3568 from bacillus halodurans. northeast structural genomics consortium bhr60.
Author: a. p. kuzin, y. chen, j. seetharaman, j. benach, r. shastry, k. conover, l. c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: bhr60, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 2hzv.pdb.
metal binding protein/dna 09-aug-06 2hzv
K Ni Se
Title: nikr-operator dna complex
Author: e. r. schreiter, c. l. drennan
Keywords: transcription factor, protein-dna complex, ribbon- helix-helix
- 2hzy.pdb.
hydrolase 09-aug-06 2hzy
Mn Na Ni Ca
Title: mouse fumarylacetoacetate hydrolase complexes with a transition-state mimic of the complete substrate
Author: t. d. hurley, d. e. timm
- 2i09.pdb.
isomerase 10-aug-06 2i09
Title: crystal structure of putative phosphopentomutase from streptococcus mutans
Author: a. a. fedorov, e. v. fedorov, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: target t1865, nysgrc, phosphopentomutase, psi, protein structure initiative, new york structural genomics research consortium
- 2i0q.pdb.
structural protein/dna 11-aug-06 2i0q
Cl
Title: crystal structure of a telomere single-strand dna-protein complex from o. nova with full-length alpha and beta telomere proteins
Author: m. p. horvath, p. buczek
- 2i0z.pdb.
oxidoreductase 11-aug-06 2i0z
Cl
Title: crystal structure of a fad binding protein from bacillus cereus, a putative nad(fad)-utilizing dehydrogenases
Author: g. minasov, l. shuvalova, i. i. vorontsov, o. kiryukhina, j. abdullah, f. r. collart, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: structural genomics, nad(fad)-utilizing dehydrogenases, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
- 2i18.pdb.
metal binding protein 13-aug-06 2i18
La
(NMR, 16 structures)
Title: the refined structure of c-terminal domain of an ef-hand calcium binding protein from entamoeba histolytica
Author: s. m. mustafi, s. mukherjee, k. v. r chary
Keywords: alpha helix, calcium binding loops
- 2iuo.pdb.
lyase 06-jun-06 2iuo
Cl Br
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m, anderson
Keywords: protein structure initiative, psi, mcsg, lyase, cyanate degradation
- 2ivs.pdb.
transferase 16-jun-06 2ivs
Title: crystal structure of non-phosphorylated ret tyrosine kinase domain
Author: p. p. knowles, j. murray-rust, n. q. mcdonald
Keywords: tyrosine kinase, ret, kinase, membrane, atp-binding, transferase
- 2ivt.pdb.
transferase 16-jun-06 2ivt
Title: crystal structure of phosphorylated ret tyrosine kinase domain
Author: p. p. knowles, j. murray-rust, n. q. mcdonald
Keywords: tyrosine kinase, ret, kinase, membrane, atp-binding, transferase
- 2ivu.pdb.
transferase 16-jun-06 2ivu
B F
Title: crystal structure of phosphorylated ret tyrosine kinase domain complexed with the inhibitor zd6474
Author: p. p. knowles, j. murray-rust, n. q. mcdonald
Keywords: tyrosine kinase, ret, kinase, membrane, atp-binding, transferase
- 2ivv.pdb.
transferase 16-jun-06 2ivv
Title: crystal structure of phosphorylated ret tyrosine kinase domain complexed with the inhibitor pp1
Author: p. p. knowles, j. murray-rust, n. q. mcdonald
Keywords: tyrosine kinase, ret, kinase, membrane, atp-binding, transferase
- 2ivz.pdb.
protein transport/hydrolase complex 23-jun-06 2ivz
Ca
Title: structure of tolb in complex with a peptide of the colicin e9 t-domain
Author: s. r. loftus, d. walker, m. j. mate, d. a. bonsor, r. james, g. r. moore, c. kleanthous
Keywords: protein transport/hydrolase complex, endonuclease, antimicrobial, translocation
- 2iw3.pdb.
translation 26-jun-06 2iw3
Se
Title: elongation factor 3 in complex with adp
Author: c. b. f. andersen, t. becker, m. blau, m. anand, m. halic, b. balar, t. mielke, t. boesen, j. s. pedersen, c. m. t. spahn, t. g. kinzy, g. r. andersen, r. beckmann
Keywords: atp-binding, elongation factor, protein biosynthesis, nucleotide-binding, phosphorylation, rna-binding, rrna-binding, translation
- 2iwf.pdb.
oxidoreductase 29-jun-06 2iwf
Cl Cu Na Ca
Title: resting form of pink nitrous oxide reductase from achromobacter cycloclastes
Author: k. paraskevopoulos, s. v. antonyuk, r. g. sawers, r. r. eady, s. s. hasnain
Keywords: oxidoreductase, denitrification, nitrous oxide binding, catalysis, periplasmic electron gating, copper chemistry, calcium, copper
- 2iwk.pdb.
oxidoreductase 30-jun-06 2iwk
Cl Cu I Na Ca
Title: inhibitor-bound form of nitrous oxide reductase from achromobacter cycloclastes at 1.7 angstrom resolution
Author: k. paraskevopoulos, s. v. antonyuk, r. g. sawers, r. r. eady, s. s. hasnain
Keywords: oxidoreductase, denitrification, nitrous oxide binding, catalysis, periplasmic electron gating, copper chemistry, calcium, copper
- 2iwv.pdb.
ion channel 04-jul-06 2iwv
Ca
Title: structure of the monomeric outer membrane porin ompg in the open and closed conformation
Author: o. yildiz, k. r. vinothkumar, p. goswami, w. kuehlbrandt
Keywords: outer membrane, ion channel, porin, membrane, transport, ion transport
- 2iww.pdb.
ion channel 05-jul-06 2iww
Title: structure of the monomeric outer membrane porin ompg in the open and closed conformation
Author: o. yildiz, k. r. vinothkumar, p. goswami, w. kuehlbrandt
Keywords: outer membrane, ion channel, porin, membrane, transport, ion transport
- 2ixk.pdb.
isomerase 08-jul-06 2ixk
Title: rmlc p aeruginosa with dtdp-4-keto rhamnnose (the product of the reaction)
Author: c. dong, j. h. naismith
Keywords: epimerise, epimerase, isomerase, epimerize
- 2iy1.pdb.
hydrolase/nuclear protein complex 11-jul-06 2iy1
Title: senp1 (mutant) full length sumo1
Author: l. shen, c. dong, j. h. naismith
Keywords: ubl conjugation pathway, protease, hydrolase, ubiquitin, thiol protease, protein protein complex, hydrolase/nuclear protein complex
- 2j0i.pdb.
transferase 03-aug-06 2j0i
Title: crystal structure of the human p21-activated kinase 4
Author: j. e. debreczeni, j. eswaran, e. ugochukwu, e. papagrigoriou, a. turnbull, f. von delft, c. arrowsmith, j. weigelt, a. edwards, m. sundstrom, s. knapp
Keywords: phosphorylation, nucleotide-binding, pak4, ste20, kinase, transferase, atp-binding, alternative splicing, serine/threonine-protein kinase
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