Recent PDB releases or updates: week of 14 July 2006

• 1f5z.pdb. lyase 18-jun-00 1f5z
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form i
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  Keywords: lyase
  
• 1f6k.pdb. lyase 21-jun-00 1f6k
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form ii
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  Keywords: lyase
  
• 1f6p.pdb. lyase 22-jun-00 1f6p
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form iii
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  
  
• 1f73.pdb. lyase 25-jun-00 1f73
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form iii in complex with sialic acid alditol
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  
  
• 1f74.pdb. lyase 26-jun-00 1f74 Cl
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form ii complexed with 4-deoxy-sialic acid
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  
  
• 1f7b.pdb. lyase 26-jun-00 1f7b Cl
  Title: crystal structure analysis of n-acetylneuraminate lyase from haemophilus influenzae: crystal form ii in complex with 4-oxo-sialic acid
  Author: j. a. r. g. barbosa, b. j. smith, r. degori, m. c. lawrence
  
  
• 1fc4.pdb. transferase 17-jul-00 1fc4 Se
  Title: 2-amino-3-ketobutyrate coa ligase
  Author: a. schmidt, a. matte, y. li, j. sivaraman, r. larocque, j. d. schrag, c. smith, v. sauve, m. cygler
  Keywords: pyridoxal phosphate, coenzyme a
  
• 1k75.pdb. oxidoreductase 18-oct-01 1k75 Se
  Title: the l-histidinol dehydrogenase (hisd) structure implicates domain swapping and gene duplication.
  Author: j. a. r. g. barbosa, j. sivaraman, y. li, r. larocque, a. matte, j. schrag, m. cygler
  Keywords: homodimer, rossman fold, 4 domains, hisd, l-histidine biosynthesis, nad cofactor, zinc
  
• 1kae.pdb. oxidoreductase 01-nov-01 1kae Zn Se
  Title: l-histidinol dehydrogenase (hisd) structure complexed with l-histidinol (substrate), zinc and nad (cofactor)
  Author: j. a. r. g. barbosa, j. sivaraman, y. li, r. larocque, a. matte, j. d. schrag, m. cygler
  Keywords: homodimer, rossman fold, 4 domains, hisd, l-histidine biosynthesis, nad cofactor, zinc
  
• 1kah.pdb. oxidoreductase 02-nov-01 1kah Zn Se
  Title: l-histidinol dehydrogenase (hisd) structure complexed with l-histidine (product), zn and nad (cofactor)
  Author: j. a. r. g. barbosa, j. sivaraman, y. li, r. larocque, a. matte, j. d. schrag, m. cygler
  Keywords: homodimer, rossman fold, 4 domains, hisd, l-histidine biosynthesis, nad cofactor, zinc
  
• 1kar.pdb. oxidoreductase 02-nov-01 1kar Zn Se
  Title: l-histidinol dehydrogenase (hisd) structure complexed with histamine (inhibitor), zinc and nad (cofactor)
  Author: j. a. r. g. barbosa, j. sivaraman, y. li, r. larocque, a. matte, j. d. schrag, m. cygler
  Keywords: homodimer, rossman fold, 4 domains, hisd, l-histidine biosynthesis, nad cofactor, zinc
  
• 1uzk.pdb. glycoprotein 15-mar-04 1uzk Ca Se
  Title: integrin binding cbegf22-tb4-cbegf33 fragment of human fibrillin-1, ca bound to cbegf23 domain only
  Author: s. s. j. lee, v. knott, k. harlos, p. a. handford, d. i. stuart
  Keywords: calcium, tb domain, fibrillin-1, glycoprotein, disease mutation, extracellular matrix, polymorphism, cbegf domain, egf-like domain
  
• 1w6h.pdb. hydrolase 18-aug-04 1w6h Br
  Title: novel plasmepsin ii-inhibitor complex
  Author: j. lindberg, p. -o. johansson, a. rosenquist, i. kvarnstroem, l. vrang, b. samuelsson, t. unge
  Keywords: drug, aspartic protease, plasmepsin, hydrolase, glycoprotein
  
• 1w6i.pdb. hydrolase 18-aug-04 1w6i
  Title: plasmepsin ii-pepstatin a complex
  Author: j. lindberg, p. -o. johansson, a. rosenquist, i. kvarnstroem, l. vrang, b. samuelsson, t. unge
  Keywords: drug, aspartic protease, plasmepsin, hydrolase, glycoprotein
  
• 1w8g.pdb. plp-binding protein 21-sep-04 1w8g
  Title: crystal structure of e. coli k-12 yggs
  Author: g. sulzenbacher, a. gruez, s. spinelli, v. roig-zamboni, f. pagot, c. bignon, r. vincentelli, c. cambillau
  Keywords: hypothetical protein, putative enzyme with plp-binding domain, plp-binding protein
  
• 1waa.pdb. metal binding protein 22-oct-04 1waa Zn
  Title: ig27 protein domain
  Author: m. c. vega, l. valencia, p. zou, m. wilmanns
  Keywords: cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat, serine/threonine-protein kinase, structural protein.
  
• 1x03.pdb. transferase 14-mar-05 1x03 Se
  Title: crystal structure of endophilin bar domain
  Author: m. masuda, s. takeda, m. sone, y. kamioka, h. mori, n. mochizuki
  
  
• 1x04.pdb. transferase 14-mar-05 1x04 Se
  Title: crystal structure of endophilin bar domain (mutant)
  Author: m. masuda, s. takeda, m. sone, y. kamioka, h. mori, n. mochizuki
  
  
• 1x1e.pdb. oxidoreductase 04-apr-05 1x1e
  Title: crystal structure of tt0495 protein from thermus thermophilus hb8
  Author: n. k. lokanath, y. terao, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 1zab.pdb. hydrolase 06-apr-05 1zab Zn
  Title: crystal structure of mouse cytidine deaminase complexed with 3-deazauridine
  Author: a. h. teh
  Keywords: cytidine deaminase, zinc, 3-deazauridine, substrate dissociation
  
• 1zcs.pdb. oxidoreductase 13-apr-05 1zcs Cl Mg Mo Fe As
  Title: crystal structure of the arsenite-inhibited and reduced form of aldehyde oxidoreductase from desulfovibrio gigas
  Author: a. e. thapper, d. r. boer, c. d. brondino, j. j. g. moura, m. j. romao
  Keywords: reduced molybdenum center
  
• 1zky.pdb. hormone/growth factor receptor 04-may-05 1zky
  Title: human estrogen receptor alpha ligand-binding domain in complex with obcp-3m and a glucocorticoid receptor interacting protein 1 nr box ii peptide
  Author: s. s. rajan, r. w. hsieh, s. k. sharma, j. b. hahm, k. w. nettles, g. l. greene
  Keywords: lbd, grip peptide
  
• 1zyu.pdb. siganling protein,transferase 11-jun-05 1zyu
  Title: crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and amppcp at 2.85 angstrom resolution
  Author: j. h. gan, y. j. gu, y. li, h. g. yan, x. ji
  
  
• 2a2q.pdb. hydrolase/blood clotting 22-jun-05 2a2q Cl Mg Zn Na Ca
  Title: complex of active-site inhibited human coagulation factor viia with human soluble tissue factor in the presence of ca2+, mg2+, na+, and zn2+
  Author: s. p. bajaj, m. bajaj, a. e. schmidt, k. padmanabhan
  Keywords: soluble tissue factor, mg2+, ca2+, na+, zn2+
  
• 2a7n.pdb. oxidoreductase 05-jul-05 2a7n
  Title: crystal structure of the g81a mutant of the active chimera of (s)-mandelate dehydrogenase
  Author: n. sukumar, y. xu, b. mitra, f. s. mathews
  
  
• 2a7p.pdb. oxidoreductase 05-jul-05 2a7p
  Title: crystal structure of the g81a mutant of the active chimera of (s)-mandelate dehydrogenase in complex with its substrate 3-indolelactate
  Author: n. sukumar, y. xu, b. mitra, f. s. mathews
  Keywords: hydroxy acid oxidizing enzyme
  
• 2a85.pdb. oxidoreductase 07-jul-05 2a85
  Title: crystal structure of the g81a mutant of the active chimera of (s)-mandelate dehydrogenase in complex with its substrate 2-hydroxyoctanoate
  Author: n. sukumar, y. xu, b. mitra, f. s. mathews
  Keywords: hydroxy acid oxidizing enzyme
  
• 2a9y.pdb. signaling protein,transferase 12-jul-05 2a9y Cl Na
  Title: crystal structure of t. gondii adenosine kinase complexed with n6-dimethyladenosine
  Author: y. zhang, m. h. el kouni, s. e. ealick
  
  
• 2a9z.pdb. signaling protein,transferase 12-jul-05 2a9z Cl Na
  Title: crystal structure of t. gondii adenosine kinase complexed with n6-dimethyladenosine and amp-pcp
  Author: y. zhang, m. h. el kouni, s. e. ealick
  
  
• 2aan.pdb. electron transport 13-jul-05 2aan Cu
  Title: auracyanin a: a "blue" copper protein from the green thermophilic photosynthetic bacterium,chloroflexus aurantiacus
  Author: m. lee, j. m. guss, h. c. freeman
  
  
• 2ac0.pdb. apoptosis/dna 18-jul-05 2ac0 Zn
  Title: structural basis of dna recognition by p53 tetramers (complex i)
  Author: m. kitayner, h. rozenberg, n. kessler, d. rabinovich, z. shakked
  
  
• 2ady.pdb. apoptosis/dna 21-jul-05 2ady Zn
  Title: structural basis of dna recognition by p53 tetramers (complex iv)
  Author: m. kitayner, h. rozenberg, n. kessler, d. rabinovich, z. shakked
  
  
• 2ahi.pdb. apoptosis/dna 28-jul-05 2ahi Zn
  Title: structural basis of dna recognition by p53 tetramers (complex iii)
  Author: m. kitayner, h. rozenberg, n. kessler, d. rabinovich, z. shakked
  
  
• 2ake.pdb. ligase/rna 03-aug-05 2ake
  Title: structure of human tryptophanyl-trna synthetase in complex with trna(trp)
  Author: n. shen, l. guo, b. yang, y. jin, j. ding
  
  
• 2arq.pdb. peptide binding protein 21-aug-05 2arq
  Title: human plasminogen activator inhibitor-2.[loop (66-98) deletion mutant] complexed with peptide n-acetyl- teaaagdggvmtgr-oh
  Author: d. a. di giusto, a. p. sutherland, l. jankova, s. j. harrop, p. m. curmi, g. c. king
  Keywords: peptide binding
  
• 2arr.pdb. peptide binding protein 21-aug-05 2arr
  Title: human plasminogen activator inhibitor-2.[loop (66-98) deletion mutant] complexed with peptide n-acetyl- teaaagmggvmtgr-oh
  Author: d. a. di giusto, a. p. sutherland, l. jankova, s. j. harrop, p. m. curmi, g. c. king
  Keywords: peptide binding
  
• 2ata.pdb. apoptosis/dna 24-aug-05 2ata Zn
  Title: structural basis of dna recognition by p53 tetramers (complex ii)
  Author: m. kitayner, h. rozenberg, n. kessler, d. rabinovich, z. shakked
  
  
• 2aus.pdb. isomerase/structural protein 29-aug-05 2aus Zn
  Title: crystal structure of the archaeal box h/aca srnp nop10-cbf5 complex
  Author: c. charron, x. manival, b. charpentier, j. -b. fourmann, f. godard, c. branlant
  Keywords: structural protein
  
• 2b1v.pdb. hormone/growth factor receptor 16-sep-05 2b1v
  Title: human estrogen receptor alpha ligand-binding domain in complex with obcp-1m and a glucocorticoid receptor interacting protein 1 nr box ii peptide
  Author: s. s. rajan, r. w. hsieh, s. k. sharma, g. l. greene
  Keywords: lbd, grip peptide
  
• 2b4q.pdb. oxidoreductase 26-sep-05 2b4q
  Title: pseudomonas aeruginosa rhlg/nadp active-site complex
  Author: d. j. miller, s. w. white
  Keywords: rhlg-nadp complex
  
• 2bvj.pdb. oxidoreductase 23-jun-05 2bvj Fe
  Title: ligand-free structure of cytochrome p450 pikc (cyp107l1)
  Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
  Keywords: pikc, cyp107l1, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase
  
• 2c4i.pdb. glycoprotein 19-oct-05 2c4i
  Title: crystal structure of engineered avidin
  Author: v. p. hytonen, j. horha, t. t. airenne, e. a. niskanen, k. helttunen, m. s. johnson, t. a. salminen, m. s. kulomaa, h. r. nordlund
  Keywords: glycoprotein, signalor
  
• 2c6h.pdb. oxidoreductase 09-nov-05 2c6h Fe
  Title: crystal structure of yc-17-bound cytochrome p450 pikc (cyp107l1)
  Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
  Keywords: pikc, cyp107l1, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase antibiotic biosynthesis
  
• 2c7x.pdb. oxidoreductase 29-nov-05 2c7x Fe
  Title: crystal structure of narbomycin-bound cytochrome p450 pikc (cyp107l1)
  Author: d. h. sherman, s. li, l. v. yermalitskaya, y. kim, j. a. smith, m. r. waterman, l. m. podust
  Keywords: pikc, narbomycin, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding, monooxygenase, oxidoreductase
  
• 2c8w.pdb. hydrolase 08-dec-05 2c8w Cl Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase, acutephase, calcium, disease mutation, gamma-carboxyglutamicacid, glycoprotein, kringle, plasma, polymorphism, serineprotease, zymogen
  
• 2c8x.pdb. hydrolase 08-dec-05 2c8x Cl Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase,gamma-carboxyglutamic acid, glycoprotein,kringle, serine proteas
  
• 2c8y.pdb. hydrolase 08-dec-05 2c8y Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase, acutephase, calcium, disease mutation, gamma-carboxyglutamicacid, glycoprotein, kringle, plasma, polymorphism, serineprotease, zymogen
  
• 2c8z.pdb. hydrolase 08-dec-05 2c8z Cl Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase,gamma-carboxyglutamic acid, glycoprotein,kringle, serine protease
  
• 2c90.pdb. hydrolase 08-dec-05 2c90 Cl Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase, acutephase, calcium, disease mutation, gamma-carboxyglutamicacid, glycoprotein, kringle, plasma, polymorphism, serineprotease, zymogen
  
• 2c93.pdb. hydrolase 09-dec-05 2c93 Na
  Title: thrombin inhibitors
  Author: n. howard, c. abell, w. blakemore, r. carr, g. chessari, m. congreve, s. howard, h. jhoti, c. w. murray, l. c. a. seavers, r. l. m. van montfort
  Keywords: blood coagulation, thrombin, hydrolase,gamma-carboxyglutamic acid, glycoprotein,kringle, serine protease
  
• 2cc1.pdb. hydrolase 11-jan-06 2cc1
  Title: crystal structure of the class a beta-lactamase from mycobacterium fortuitum
  Author: e. sauvage, e. fonze, p. charlier
  Keywords: beta-lactamase, broad-spectrum, hydrolase, penicillin
  
• 2ccq.pdb. glycoprotein 17-jan-06 2ccq
  Title: the n-terminal domain of p97
  Author: m. d. allen, a. buchberger, m. bycroft
  Keywords: glycanase homolog
  
• 2cdq.pdb. transferase 26-jan-06 2cdq
  Title: crystal structure of arabidopsis thaliana aspartate kinase complexed with lysine and s-adenosylmethionine
  Author: c. mas-droux, g. curien, m. robert-genthon, m. laurencin, j. l. ferrer, r. dumas
  Keywords: amino acid metabolism, act domain, allostery, s-adenosylmethionine, lysine, allosteric effector, plant, transferase, amino acid biosynthesis
  
• 2ce0.pdb. electron transfer 01-feb-06 2ce0 Fe
  Title: structure of oxidized arabidopsis thaliana cytochrome 6a
  Author: m. j. marcaida, b. g. schlarb-ridley, j. a. r. worrall, j. wastl, t. j. evans, d. s. bendall, b. f. luisi, c. j. howe
  Keywords: electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer
  
• 2ce1.pdb. electron transfer 02-feb-06 2ce1 Fe
  Title: structure of reduced arabidopsis thaliana cytochrome 6a
  Author: m. j. marcaida, b. g. schlarb-ridley, j. a. r. worrall, j. wastl, t. j. evans, d. s. bendall, b. f. luisi, c. j. howe
  Keywords: electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer
  
• 2cjp.pdb. hydrolase 04-apr-06 2cjp
  Title: structure of potato (solanum tuberosum) epoxide hydrolase i (steh1)
  Author: s. l. mowbray, l. t. elfstrom, k. m. ahlgren, c. e. andersson, m. widersten
  
  
• 2cm0.pdb. transferase 03-may-06 2cm0
  Title: the n-terminal domain of p97
  Author: m. d. allen, a. buchberger, m. bycroft
  Keywords: kinase, pug domain
  
• 2cmo.pdb. ion channel 11-may-06 2cmo
  Title: the structure of a mixed glur2 ligand-binding core dimer in complex with (s)-glutamate and the antagonist (s)-ns1209
  Author: c. kasper, d. s. pickering, o. mirza, l. olsen, a. s. kristensen, j. r. greenwood, t. liljefors, a. schousboe, f. watjen, m. gajhede, b. w. sigurskjold, j. s. kastrup
  Keywords: receptor, palmitate, transport, postsynaptic membrane, glycoprotein, ionic channel, ion transport, transmembrane, alternative splicing, rna editing, lipoprotein, ion channel
  
• 2cnc.pdb. hydrolase 19-may-06 2cnc Cl Mg
  Title: family 10 xylanase
  Author: h. xie, j. flint, m. vardakou, j. h. lakey, r. j. lewis, h. j. gilbert, c. dumon
  Keywords: xylan degradation, xylanase, hydrolase, glycosidase, thermostability
  
• 2cnx.pdb. transcription 25-may-06 2cnx
  Title: wdr5 and histone h3 lysine 4 dimethyl complex at 2.1 angstrom
  Author: a. j. ruthenburg, w. wang, d. m. graybosch, h. li, c. d. allis, d. j. patel, g. l. verdine
  Keywords: lysine methylation, mll1, leukemia, hox gene activation, transcription activation, transcription
  
• 2co0.pdb. transcription 25-may-06 2co0
  Title: wdr5 and unmodified histone h3 complex at 2.25 angstrom
  Author: a. j. ruthenburg, w. wang, d. m. graybosch, h. li, c. d. allis, d. j. patel, g. l. verdine
  Keywords: lysine methylation, mll1, leukemia, hox gene activation, transcription activation
  
• 2cwr.pdb. hydrolase 24-jun-05 2cwr
  Title: crystal structure of chitin biding domain of chitinase from pyrococcus furiosus
  Author: k. uegaki, t. nakamura, k. ishikawa, h. matsumura
  Keywords: chitin-binding domain, pyrococcus furiosus, endoglucanase, chitin, hyperthermophilic
  
• 2d0f.pdb. hydrolase 02-aug-05 2d0f Ca
  Title: crystal structure of thermoactinomyces vulgaris r-47 alpha- amylase 1 (tvai) mutant d356n complexed with p2, a pullulan model oligosaccharide
  Author: a. abe, h. yoshida, t. tonozuka, y. sakano, s. kamitori
  
  
• 2d0g.pdb. hydrolase 02-aug-05 2d0g Ca
  Title: crystal structure of thermoactinomyces vulgaris r-47 alpha- amylase 1 (tvai) mutant d356n/e396q complexed with p5, a pullulan model oligosaccharide
  Author: a. abe, h. yoshida, t. tonozuka, y. sakano, s. kamitori
  
  
• 2d0h.pdb. hydrolase 02-aug-05 2d0h Ca
  Title: crystal structure of thermoactinomyces vulgaris r-47 alpha- amylase 1 (tvai) mutant d356n/e396q complexed with p2, a pullulan model oligosaccharide
  Author: a. abe, h. yoshida, t. tonozuka, y. sakano, s. kamitori
  
  
• 2d2i.pdb. oxidoreductase 09-sep-05 2d2i
  Title: crystal structure of nadp-dependent glyceraldehyde-3- phosphate dehydrogenase from synechococcus sp. complexed with nadp+
  Author: t. kitatani, y. nakamura, k. wada, t. kinoshita, m. tamoi, s. shigeoka, t. tada
  Keywords: rossmann fold, protein-nadp+ complex
  
• 2d4c.pdb. transferase 13-oct-05 2d4c Ca
  Title: crystal structure of the endophilin bar domain mutant
  Author: m. masuda, s. takeda
  
  
• 2d4i.pdb. hydrolase 20-oct-05 2d4i Na
  Title: monoclinic hen egg-white lysozyme crystallized at ph4.5 form heavy water solution
  Author: k. harata, t. akiba
  Keywords: rigid-body motion, tls analysis
  
• 2d4j.pdb. hydrolase 20-oct-05 2d4j
  Title: transformed monoclinic crystal of hen egg-white lysozyme from a heavy water solution
  Author: k. harata, t. akiba
  Keywords: rigid-body motion, tls analysis
  
• 2d4k.pdb. hydrolase 20-oct-05 2d4k Cl Na
  Title: monoclinic hen egg-white lysozyme crystallized at 313k
  Author: k. harata, t. akiba
  Keywords: rigid-body motion, tls analysis
  
• 2d6f.pdb. ligase/rna 13-nov-05 2d6f Zn
  Title: crystal structure of glu-trna(gln) amidotransferase in the complex with trna(gln)
  Author: o. nureki
  Keywords: rna
  
• 2d8o.pdb. unknown function 07-dec-05 2d8o I
  Title: structure of vil-thaumatin
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: vaporizing iodine labeling(vil)
  
• 2d8p.pdb. unknown function 08-dec-05 2d8p I
  Title: structure of hyper-vil-thaumatin
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: hydrogen peroxide vaporizing iodine labeling(hyper-vil)
  
• 2d8w.pdb. hydrolase 08-dec-05 2d8w I Ca
  Title: structure of hyper-vil-trypsin
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: vaporizing iodine labeling(vil)
  
• 2d91.pdb. hydrolase 08-dec-05 2d91 I
  Title: structure of hyper-vil-lysozyme
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: vaporizing iodine labeling(vil)
  
• 2d97.pdb. hydrolase 09-dec-05 2d97 I
  Title: structure of vil-xylanase
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: vaporizing iodine labeling(vil)
  
• 2d98.pdb. hydrolase 09-dec-05 2d98 I
  Title: structure of vil (extra ki/i2 added)-xylanase
  Author: h. miyatake, t. hasegawa, a. yamano
  Keywords: vaporizing iodine labeling(vil)
  
• 2dce.pdb. structural genomics, unknown function 06-jan-06 2dce (NMR, 20 structures)
  Title: solution structure of the swirm domain of human kiaa1915 protein
  Author: m. yoneyama, n. tochio, t. umehara, s. koshiba, m. inoue, a. tanaka, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: kiaa1915, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2dch.pdb. hydrolase 06-jan-06 2dch Cl
  Title: crystal structure of archaeal intron-encoded homing endonuclease i-tsp061i
  Author: h. nakayama, h. tsuge, t. shimamura, m. miyano, n. nomura, y. sako
  
  
• 2dcl.pdb. structural genomics, unknown function 08-jan-06 2dcl
  Title: structure of ph1503 protein from pyrococcus horikoshii ot3
  Author: b. bagautdinov, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
  Keywords: x-ray diffraction, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2ddq.pdb. immune system 02-feb-06 2ddq
  Title: crystal structure of the fab fragment of a r310 antibody complexed with (r)-hne-histidine adduct
  Author: s. ito
  Keywords: 4-hydroxy-2-nonenal, immunoglobulin
  
• 2de8.pdb. hydrolase 09-feb-06 2de8 Cl
  Title: crystal structure of porcine pancreatic elastase with a unique conformation induced by tris
  Author: t. kinoshita, t. tada
  Keywords: serine protease
  
• 2de9.pdb. hydrolase 09-feb-06 2de9
  Title: crystal structure of porcine pancreatic elastase complexed with tris after soaking a tris-free solution
  Author: t. kinoshita, t. tada
  
  
• 2dfb.pdb. hydrolase 28-feb-06 2dfb I
  Title: xylanase ii from tricoderma reesei at 100k
  Author: k. harata, t. akiba
  
  
• 2dfc.pdb. hydrolase 28-feb-06 2dfc I
  Title: xylanase ii from tricoderma reesei at 293k
  Author: k. harata, t. akiba
  
  
• 2dq7.pdb. transferase 23-may-06 2dq7
  Title: crystal structure of fyn kinase domain complexed with staurosporine
  Author: t. kinoshita, t. tada
  Keywords: kinase domain, staurosporine
  
• 2dr2.pdb. ligase/rna 05-jun-06 2dr2
  Title: structure of human tryptophanyl-trna synthetase in complex with trna(trp)
  Author: n. shen, l. guo, b. yang, y. jin, j. ding
  
  
• 2dsf.pdb. metal binding protein 29-jun-06 2dsf Zn Fe
  Title: structure of the complex of c-terminal lobe of bovine lactoferrin with xylose at 2.8a resolution
  Author: r. mir, n. singh, m. sinha, s. sharma, a. bhushan, t. p. singh
  Keywords: sugar
  
• 2eu2.pdb. lyase 28-oct-05 2eu2 Zn
  Title: human carbonic anhydrase ii in complex with novel inhibitors
  Author: s. z. fisher, l. govindasamy, n. boyle, m. agbandje-mckenna, d. n. silverman, g. m. blackburn, r. mckenna
  
  
• 2eu3.pdb. lyase 28-oct-05 2eu3 F Zn
  Title: human carbonic anhydrase ii in complex with novel inhibitors
  Author: s. z. fisher, l. govindasamy, n. boyle, m. agbandje-mckenna, d. n. silverman, g. m. blackburn, r. mckenna
  
  
• 2f6j.pdb. transcription 29-nov-05 2f6j Zn Se
  Title: crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me3 bound state
  Author: h. li, d. j. patel
  
  
• 2f6n.pdb. transcription 29-nov-05 2f6n Zn Se
  Title: crystal structure of phd finger-linker-bromodomain fragment of human bptf in the free form
  Author: h. li, d. j. patel
  
  
• 2f7e.pdb. transferase 30-nov-05 2f7e
  Title: pka complexed with (s)-2-(1h-indol-3-yl)-1-(5-isoquinolin-6- yl-pyridin-3-yloxymethyl-etylamine
  Author: v. s. stoll
  Keywords: akt inhibitors
  
• 2fai.pdb. hormone/growth factor receptor 07-dec-05 2fai
  Title: human estrogen receptor alpha ligand-binding domain in complex with obcp-2m and a glucocorticoid receptor interacting protein 1 nr box ii peptide
  Author: s. s. rajan, r. w. hsieh, s. k. sharma, g. l. greene
  Keywords: lbd, grip peptide
  
• 2ffx.pdb. metal binding protein 20-dec-05 2ffx Cd
  Title: structure of human ferritin l. chain
  Author: z. m. wang, c. li, m. p. ellenburg, e. m. soitsman, j. r. ruble, b. s. wright, j. x. ho, d. c. carter
  
  
• 2fir.pdb. blood clotting 30-dec-05 2fir Cl Mg Zn Na Ca
  Title: crystal structure of dfpr-viia/stf
  Author: s. p. bajaj, a. e. schmidt, k. padmanabhan, m. s. bajaj, d. prevost, h. schreuder
  Keywords: soluble tissue factor, sodium, magnesium, zinc, oxyanion hole, serine protease, blood coagulation
  
• 2fmk.pdb. signaling protein 09-jan-06 2fmk Mg F Be
  Title: crystal structure of mg2+ and bef3- bound chey in complex with chez 200-214 solved from a p2(1)2(1)2 crystal grown in mes (ph 6.0)
  Author: j. guhaniyogi, v. l. robinson, a. m. stock
  
  
• 2fr5.pdb. hydrolase 19-jan-06 2fr5 Zn
  Title: crystal structure of mouse cytidine deaminase complexed with tetrahydrouridine
  Author: a. h. teh
  Keywords: zinc, tetrahydrouridine, protein- inhibitor complex, alternate conformation of arg68
  
• 2fr6.pdb. hydrolase 19-jan-06 2fr6 Zn
  Title: crystal structure of mouse cytidine deaminase complexed with cytidine
  Author: a. h. teh
  Keywords: zinc, cytidine, uridine, protein- substrate complex, substrate-product intermediate
  
• 2fsa.pdb. transcription 21-jan-06 2fsa Zn Se
  Title: crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me2 bound state
  Author: h. li, d. j. patel
  Keywords: bromodomain, peptide complex
  
• 2fsz.pdb. hormone/growth factor 23-jan-06 2fsz
  Title: a second binding site for hydroxytamoxifen within the coactivator-binding groove of estrogen receptor beta
  Author: yong wang
  
  
• 2fui.pdb. protein binding 26-jan-06 2fui (NMR, 20 structures)
  Title: nmr solution structure of phd finger fragment of human bptf in free state
  Author: s. ilin, d. j. patel
  Keywords: nurf, phd domain, histone recognition, histone binding, h3k4me3
  
• 2fuu.pdb. protein binding 27-jan-06 2fuu Zn (NMR, 20 structures)
  Title: nmr solution structure of the phd domain from the human bptf in complex with h3(1-15)k4me3 peptide
  Author: s. ilin, d. j. patel
  Keywords: nurf, phd domain, histone recognition, h3k4me3
  
• 2g29.pdb. transport protein 15-feb-06 2g29
  Title: crystal structure of the periplasmic nitrate-binding protein nrta from synechocystis pcc 6803
  Author: n. m. koropatkin, h. b. pakrasi, t. j. smith
  Keywords: alpha-beta protein
  
• 2g6q.pdb. gene regulation, apoptosis 24-feb-06 2g6q Zn
  Title: crystal structure of ing2 phd domain in complex with h3k4me3 peptide
  Author: p. v. pena, r. zhao, t. g. kutateladze
  
  
• 2g9h.pdb. immune system 06-mar-06 2g9h Zn
  Title: crystal structure of staphylococcal enterotoxin i (sei) in complex with a human mhc class ii molecule
  Author: m. m. fernandez, r. guan, e. l. malchiodi, r. a. mariuzza
  Keywords: superantigen, zn, hla clasii molecule
  
• 2ga4.pdb. toxin 07-mar-06 2ga4 Na
  Title: stx2 with adenine
  Author: m. e. fraser
  
  
• 2gak.pdb. transferase 09-mar-06 2gak
  Title: x-ray crystal structure of murine leukocyte-type core 2 b1, 6-n-acetylglucosaminyltransferase (c2gnt-l)
  Author: j. e. pak, j. m. rini
  Keywords: cis-peptide, dimer
  
• 2gam.pdb. transferase 09-mar-06 2gam
  Title: x-ray crystal structure of murine leukocyte-type core 2 b1, 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex with galb1,3galnac
  Author: j. e. pak, j. m. rini
  Keywords: cis-peptide, dimer
  
• 2ggu.pdb. sugar binding protein 24-mar-06 2ggu Ca
  Title: crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein d in complex with maltotriose
  Author: j. f. head
  
  
• 2ggx.pdb. sugar binding protein 24-mar-06 2ggx Ca
  Title: crystal structure of the trimer neck and carbohydrate recognition domain of human surfactant protein d in complex with p-nitrophenyl maltoside
  Author: j. head
  
  
• 2ghu.pdb. hydrolase 27-mar-06 2ghu
  Title: crystal structure of falcipain-2 from plasmodium falciparum
  Author: t. hogg, k. nagarajan, c. l. schmidt, r. hilgenfeld
  Keywords: l-domain, r-domain, alpha helix, random coil, twisted antiparallel beta-sheet
  
• 2gpl.pdb. hydrolase 18-apr-06 2gpl
  Title: tmc-95 based biphenyl-ether macrocycles: specific proteasome inhibitors
  Author: m. groll, m. goetz, m. kaiser, e. weyher, m. moroder
  
  
• 2gtn.pdb. transferase 28-apr-06 2gtn F
  Title: mutated map kinase p38 (mus musculus) in complex with inhbitor pg-951717
  Author: r. l. walter, m. j. mekel, a. g. evdokimov, m. e. pokross, m. sabat
  Keywords: p38
  
• 2gv8.pdb. oxidoreductase 02-may-06 2gv8 Se
  Title: crystal structure of flavin-containing monooxygenase (fmo) from s.pombe and nadph cofactor complex
  Author: s. eswaramoorthy, s. swaminathan
  Keywords: fad, nadph, cofactor complex, oxygenase
  
• 2gv9.pdb. transferase 02-may-06 2gv9 Hg
  Title: crystal structure of the herpes simplex virus type 1 dna polymerase
  Author: s. liu
  
  
• 2gvc.pdb. oxidoreductase 02-may-06 2gvc Se
  Title: crystal structure of flavin-containing monooxygenase (fmo) from s.pombe and substrate (methimazole) complex
  Author: s. eswaramoorthy, s. swaminathan
  Keywords: fad, methimazole, oxygenase
  
• 2gza.pdb. hydrolase 11-may-06 2gza
  Title: crystal structure of the virb11 atpase from the brucella suis type iv secretion system in complex with sulphate
  Author: s. hare, r. bayliss, c. baron, g waksman
  Keywords: atpase
  
• 2gzx.pdb. structural genomics, unknown function 12-may-06 2gzx Ni Se
  Title: crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237.
  Author: s. m. vorobiev, h. neely, j. seetharaman, d. wang, y. fang, r. xiao, t. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: dnase, deoxyribonuclease, nesg, zr237, structural genomics, psi, protein structure initiative, northeast structural genomics consortium
  
• 2h0e.pdb. hydrolase 14-may-06 2h0e Se
  Title: crystal structure of pucm in the absence of substrate
  Author: s. rhee
  Keywords: hydrolase, hiu
  
• 2h0f.pdb. hydrolase 15-may-06 2h0f Se
  Title: crystal structure of pucm in the presence of 8-azaxanthine
  Author: s. rhee
  Keywords: inhibitor complex, hiu, hydrolase
  
• 2h0j.pdb. hydrolase 15-may-06 2h0j Se
  Title: crystal structure of pucm in the presence of 5,6- diaminouracil
  Author: s. rhee
  Keywords: complex with diaminouracil, hiu, hydrolase
  
• 2h13.pdb. transcription 15-may-06 2h13
  Title: crystal structure of wdr5/histone h3 complex
  Author: j. f. couture, e. collazo, r. c. trievel
  Keywords: beta-propeller, wd40-repeat, mll
  
• 2h14.pdb. transcription 15-may-06 2h14
  Title: crystal of wdr5 (apo-form)
  Author: j. f. couture, e. collazo, r. c. trievel
  Keywords: beta-propeller, wd-40 repeats, mll
  
• 2h1q.pdb. structural genomics, unknown function 16-may-06 2h1q Cl Se
  Title: crystal structure of hypothetical protein (zp_00559375.1) from desulfitobacterium halfniense dcb-2 at 2.01 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
  
• 2h4v.pdb. hydrolase 25-may-06 2h4v Cl Na
  Title: crystal structure of the human tyrosine receptor phosphatase gamma
  Author: e. ugochukwu, a. barr, s. das, j. eswaran, p. savitsky, m. sundstrom, a. edwards, c. arrowsmith, j. weigelt, j. debreczeni, f. von delft, s. knapp, structural genomics consortium (sgc)
  Keywords: gamma, human, structural genomics, structural genomics consortium, sgc
  
• 2h7b.pdb. transcription 01-jun-06 2h7b (NMR, 20 structures)
  Title: solution structure of the etafh domain from the human leukemia-associated fusion protein aml1-eto
  Author: m. j. plevin, j. zhang, c. guo, r. g. roeder, m. ikura
  
  
• 2ha8.pdb. rna binding protein 12-jun-06 2ha8
  Title: methyltransferase domain of human tar (hiv-1) rna binding protein 1
  Author: j. min, h. wu, h. zeng, p. loppnau, k. battaile, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
  Keywords: structural genomics, structural genomics consortium, sgc
  
• 2hak.pdb. signaling protein,transferase 13-jun-06 2hak
  Title: catalytic and ubiqutin-associated domains of mark1/par-1
  Author: a. marx, c. nugoor, j. mueller, s. panneerselvam, e. -m. mandelkow, e. mandelkow
  
  
• 2hg4.pdb. transferase 26-jun-06 2hg4 Cl Se
  Title: structure of the ketosynthase-acyltransferase didomain of module 5 from debs.
  Author: y. tang, c. y. kim, i. i. mathews, d. e. cane, c. khosla
  Keywords: acyltransferase, module 5, debs
  
• 2hgl.pdb. rna binding protein 27-jun-06 2hgl (NMR, 15 structures)
  Title: nmr structure of the first qrrm domain of human hnrnp f
  Author: c. dominguez, f. h. t allain
  Keywords: g-tract, g-quadruplex, alternative, splicing
  
• 2hgm.pdb. rna binding protein 27-jun-06 2hgm (NMR, 15 structures)
  Title: nmr structure of the second qrrm domain of human hnrnp f
  Author: c. dominguez, f. h. t allain
  Keywords: g-tract, g-quadruplex, alternative splicing
  
• 2hgn.pdb. rna binding protein 27-jun-06 2hgn (NMR, 15 structures)
  Title: nmr structure of the third qrrm domain of human hnrnp f
  Author: c. dominguez, f. h. t allain
  Keywords: g-tract, g-quadruplex, alternative splicing
  
• 2iu1.pdb. transcription 24-may-06 2iu1
  Title: crystal structure of eif5 c-terminal domain
  Author: c. bieniossek, p. schuetz, u. baumann
  Keywords: eif5, gtp-binding, phosphorylation, protein biosynthesis, translation inititation, initiation factor, nucleotide-binding, transcription
  
• 2iw0.pdb. hydrolase 23-jun-06 2iw0 Cl Zn
  Title: structure of the chitin deacetylase from the fungal pathogen colletotrichum lindemuthianum
  Author: d. e. blair, o. hekmat, a. w. schuttelkopf, b. shrestha, k. tokuyasu, s. g. withers, d. m. f. van aalten
  Keywords: chitin de-n-acetylase, family 4 carbohydrate esterase
  
• 2iw2.pdb. hydrolase 24-jun-06 2iw2 Na
  Title: crystal structure of human prolidase
  Author: u. mueller, f. h. niesen, y. roske, f. goetz, j. behlke, k. buessow, u. heinemann
  Keywords: metal-binding, metalloprotease, phosphorylation
  
• 2iwa.pdb. transferase 27-jun-06 2iwa Ca
  Title: unbound glutaminyl cyclotransferase from carica papaya.
  Author: t. guevara, n. mallorqui-fernandez, r. garcia-castellanos, g. e. petersen, c. lauritzen, j. pedersen, j. arnau, f. x. gomis-ruth, m. sola
  Keywords: pyroglutamate, acyltransferase, glutaminyl cyclase, n-terminal cyclisation
  
• 2iwb.pdb. antibiotic resistance 27-jun-06 2iwb Ni
  Title: mecr1 unbound extracellular antibiotic-sensor domain.
  Author: a. marrero, g. mallorqui-fernandez, t. guevara, r. garcia-castellanos, f. x. gomis-ruth
  Keywords: methicillin resistance, beta-lactamic antibiotics, mrsa, beta-lactamase, antibiotic resistance, penicillin-binding protein
  
• 2iwc.pdb. antibiotic resistance 27-jun-06 2iwc
  Title: benzylpenicilloyl-acylated mecr1 extracellular antibiotic- sensor domain.
  Author: a. marrero, g. mallorqui-fernandez, t. guevara, r. garcia-castellanos, f. x. gomis-ruth
  Keywords: mrsa, beta-lactamase, benzylpenicillin, antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, penicillin-binding protein
  
• 2iwd.pdb. antibiotic resistance 27-jun-06 2iwd
  Title: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor domain.
  Author: a. marrero, g. mallorqui-fernandez, t. guevara, r. garcia-castellanos, f. x. gomis-ruth
  Keywords: oxacillin, beta-lactamase, mrsa, antibiotic resistance, methicillin resistance, beta- lactamic antibiotics, penicillin-binding protein
  
• 2iwq.pdb. signaling protein 03-jul-06 2iwq
  Title: 7th pdz domain of multiple pdz domain protein mpdz
  Author: j. m. elkins, g. berridge, p. savitsky, c. e. a. smee, a. turnbull, e. ugochukwu, e. papagrigoriou, m. sundstrom, a. edwards, c. arrowsmith, j. weigelt, d. a. doyle
  Keywords: pdz, mpdz, mupp1, mupp- 1, membrane, pdz domain, host-virus interaction, structural genomics consortium, synaptosome, tight junction, alternative splicing, signaling protein
  
• 2iwr.pdb. hydrolase 03-jul-06 2iwr As
  Title: gtpase like domain of centaurin gamma 1 (human)
  Author: j. m. elkins, m. soundararajan, x. yang, e. papagrigoriou, m. sundstrom, a. edwards, c. arrowsmith, j. weigelt, d. a. doyle
  Keywords: gtpase, oncogene, transport, structual genomics consortium