Recent PDB releases or updates: week of 19 May 2006

• 1td9.pdb. transferase 21-may-04 1td9
  Title: crystal structure of a phosphotransacetylase from bacillus subtilis
  Author: q. s. xu, j. jancarik, h. yokota, r. kim, s. -h. kim, berkeley structural genomics center (bsgc)
  Keywords: bsgc structure funded by nih, protein structure initiative, psi, berkeley structural genomics center
  
• 1uwp.pdb. signaling protein 11-feb-04 1uwp Se
  Title: initial events in the photocycle of photoactive yellow protein
  Author: r. kort, k. j. hellingwerf, r. b. g. ravelli
  Keywords: pas, lov, gaf, domains, fold photocycle, photoactive, photoreceptor, yellow
  
• 1vs1.pdb. transferase 09-mar-06 1vs1 Mn
  Title: crystal structure of 3-deoxy-d-arabino-heptulosonate-7- phosphate synthase (dahp synthase) from aeropyrum pernix in complex with mn2+ and pep
  Author: i. a. shumilin, l. zhou, j. wu, r. w. woodard, r. bauerle, r. h. kretsinger
  
  
• 1wvo.pdb. transferase 22-dec-04 1wvo (NMR, 20 structures)
  Title: solution structure of rsgi ruh-029, an antifreeze protein like domain in human n-acetylneuraminic acid phosphate synthase gene.
  Author: y. ito, t. hamada, f. hayashi, s. yokoyama, h. hirota, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 1wz4.pdb. gene regulation 23-feb-05 1wz4 (NMR, 20 structures)
  Title: solution conformation of adr subtype hbv pre-s2 epitope
  Author: s. -w. chi, k. -h. han
  
  
• 1x3l.pdb. transferase 09-may-05 1x3l
  Title: crystal structure of the ph0495 protein from pyrococccus horikoshii ot3
  Author: h. mizutani, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 1x3o.pdb. lipid transport 10-may-05 1x3o
  Title: crystal structure of the acyl carrier protein from thermus thermophilus hb8
  Author: h. mizutani, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
  
• 1xco.pdb. transferase 02-sep-04 1xco
  Title: crystal structure of a phosphotransacetylase from bacillus subtilis in complex with acetylphosphate
  Author: q. s. xu, j. jancarik, y. lou, h. yokota, p. adams, r. kim, s. -h. kim, berkeley structural genomics center (bsgc)
  Keywords: bsgc structure funded by nih, protein structure initiative, psi, berkeley structural genomics center, bsgc
  
• 1xo7.pdb. isomerase 05-oct-04 1xo7
  Title: crystal structure of cyclophilin from trypanosoma cruzi
  Author: j. m. caruthers, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
  Keywords: rotamase, proline, isomerase, cis-trans, trypanosoma, cruzi, structural genomics, protein structure initiative, psi, structural genomics of pathogenic protozoa consortium, sgpp
  
• 1xq7.pdb. isomerase 11-oct-04 1xq7
  Title: cyclophilin from trypanosoma cruzi bound to cyclosporin a
  Author: j. m. caruthers, w. g. j. hol, consortium structural genomics of pathogenic protozoa (sgpp)
  Keywords: cyclosporin a, isomerase, rotamase, proline, cis, trans, structural genomics, protein structure initiative, psi, structural genomics of pathogenic protozoa consortium, sgpp
  
• 1y0f.pdb. structural protein/contractile protein 15-nov-04 1y0f (fiber diffraction)
  Title: the structure of collagen type i. single type i collagen molecule
  Author: j. p. r. o. orgel
  Keywords: in situ, triple-helix, supermolecular, packing structure
  
• 1y0h.pdb. structural genomics, unknown function 15-nov-04 1y0h
  Title: structure of rv0793 from mycobacterium tuberculosis
  Author: m. j. lemieux, c. ference, m. m. cherney, m. wang, c. garen, m. n. james, tb structural genomics consortium (tbsgc)
  Keywords: alpha+beta sandwich with antiparallel beta-sheet, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
  
• 1ygv.pdb. structural protein/contractile protein 05-jan-05 1ygv (fiber diffraction)
  Title: the structure of collagen type i. single type i collagen molecule: rigid refinment
  Author: j. p. r. o. orgel
  Keywords: in situ, triple-helix, supermolecular, packing structure
  
• 1yz1.pdb. unknown function 26-feb-05 1yz1
  Title: crystal structure of human translationally controlled tumour associated protein
  Author: j. cavarelli, d. moras, r. amson, a. telerman
  
  
• 1zkr.pdb. allergen 04-may-05 1zkr
  Title: crystal structure of the major cat allergen fel d 1 (1+2)
  Author: l. kaiser, t. cirkovic velickovic, j. adedoyin, s. thunberg, h. gronlund, g. gafvelin, m. van hage, a. achour
  Keywords: uteroglobin, secretoglobin
  
• 1zlm.pdb. signaling protein 06-may-05 1zlm
  Title: crystal structure of the sh3 domain of human osteoclast stimulating factor
  Author: l. chen, y. wang, d. wells, d. toh, h. harold, j. zhou, e. digiammarino, e. j. meehan
  
  
• 1zm1.pdb. hydrolase 10-may-05 1zm1 Ca Se
  Title: crystal structures of complex f. succinogenes 1,3-1,4-beta- d-glucanase and beta-1,3-1,4-cellotriose
  Author: l. c. tsai, l. f. shyur, y. s. cheng, s. h. lee
  Keywords: 3-1,4-beta-d-glucanase, beta-1,3-1,4- cellotriose (cltr), active cleft
  
• 1zor.pdb. oxidoreductase 13-may-05 1zor Na
  Title: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima
  Author: m. karlstrom, i. h. steen, n. -k. birkeland, r. ladenstein
  Keywords: cis-proline, thermostable
  
• 1ztb.pdb. ligase 26-may-05 1ztb
  Title: crystal structure of chorismate synthase from mycobacterium tuberculosis
  Author: m. v. b. dias, j. c. borges, f. ely, j. h. pereira, f. canduri, c. h. i. ramos, j. frazzon, m. s. palma, l. a. basso, d. s. santos, w. f. azevedo jr.
  Keywords: flavoprotein, shikimate
  
• 1zv7.pdb. virus/viral protein 01-jun-05 1zv7 Cl
  Title: a structure-based mechanism of sars virus membrane fusion
  Author: y. deng, j. liu, q. zheng, w. yong, j. dai, m. lu
  Keywords: membrane fusion, s2, virus entry, coiled coils, conformational change
  
• 1zv8.pdb. virus/viral protein 01-jun-05 1zv8 Zn Na As
  Title: a structure-based mechanism of sars virus membrane fusion
  Author: y. deng, j. liu, q. zheng, w. yong, j. dai, m. lu
  Keywords: membrane fusion, s2, virus entry, coiled coils, conformational change
  
• 1zva.pdb. virus/viral protein 01-jun-05 1zva
  Title: a structure-based mechanism of sars virus membrane fusion
  Author: y. deng, j. liu, q. zheng, w. yong, j. dai, m. lu
  Keywords: membrane fusion, s2, virus entry, coiled coils, conformational change
  
• 1zvb.pdb. virus/viral protein 01-jun-05 1zvb
  Title: a structure-based mechanism of sars virus membrane fusion
  Author: y. deng, j. liu, q. zheng, w. yong, j. dai, m. lu
  Keywords: membrane fusion, s2, virus entry, coiled coils, conformational change
  
• 1zvx.pdb. hydrolase 03-jun-05 1zvx Zn Ca
  Title: crystal structure of the complex between mmp-8 and a phosphonate inhibitor (r-enantiomer)
  Author: g. pochetti, e. gavuzzo, c. campestre, m. agamennone, p. tortorella, v. consalvi, c. gallina, o. hiller, h. tschesche, p. a. tucker, f. mazza
  Keywords: phosphonic inhibitors, hydrolase, sulfonamide junction
  
• 1zw7.pdb. structural protein 03-jun-05 1zw7 (NMR, 21 structures)
  Title: elimination of the c-cap in ubiquitin structure, dynamics and thermodynamic consequences
  Author: d. n. ermolenko, b. dangi, a. m. gronenborn, g. i. makhatadze
  Keywords: thermodynamics
  
• 2a6p.pdb. structural genomics, unknown function 03-jul-05 2a6p
  Title: structure solution to 2.2 angstrom and functional characterisation of the open reading frame rv3214 from mycobacterium tuberculosis
  Author: h. a. watkins, m. yu, e. n. baker, tb structural genomics consortium (tbsgc)
  Keywords: structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
  
• 2abo.pdb. virus/viral protein 15-jul-05 2abo (NMR, minimized average structure)
  Title: nmr structure of gamma herpesvirus 68 a viral bcl-2 homolog
  Author: j. loh, q. huang, a. m. petros, d. nettesheim, l. f. van dyk, l. labrada, s. h. speck, b. levine, e. t. olejniczak, h. w. virgin
  Keywords: murine gamma herpes virus
  
• 2age.pdb. hydrolase 26-jul-05 2age Ca
  Title: succinyl-aapr-trypsin acyl-enzyme at 1.15 a resolution
  Author: e. s. radisky, j. m. lee, c. j. lu, d. e. koshland jr.
  
  
• 2agg.pdb. hydrolase 26-jul-05 2agg Ca
  Title: succinyl-aapk-trypsin acyl-enzyme at 1.28 a resolution
  Author: e. s. radisky, j. m. lee, c. j. lu, d. e. koshland jr.
  
  
• 2agi.pdb. hydrolase 26-jul-05 2agi Ca
  Title: the leupeptin-trypsin covalent complex at 1.14 a resolution
  Author: e. s. radisky, j. m. lee, c. j. lu, d. e. koshland jr.
  
  
• 2ah4.pdb. hydrolase 26-jul-05 2ah4 Ca
  Title: guanidinobenzoyl-trypsin acyl-enzyme at 1.13 a resolution
  Author: e. s. radisky, j. m. lee, c. j. lu, d. e. koshland jr.
  
  
• 2am9.pdb. hormone/growth factor receptor 09-aug-05 2am9
  Title: crystal structure of human androgen receptor ligand binding domain in complex with testosterone
  Author: k. pereira de jesus-tran, p. -l. cote, l. cantin, j. blanchet, f. labrie, r. breton
  Keywords: androgen receptor, ligand binding domain, testosterone, agonist
  
• 2ama.pdb. hormone/growth factor receptor 09-aug-05 2ama
  Title: crystal structure of human androgen receptor ligand binding domain in complex with dihydrotestosterone
  Author: k. pereira de jesus-tran, p. -l. cote, l. cantin, j. blanchet, f. labrie, r. breton
  Keywords: androgen receptor, ligand binding domain, dht
  
• 2amb.pdb. hormone/growth factor receptor 09-aug-05 2amb
  Title: crystal structure of human androgen receptor ligand binding domain in complex with tetrahydrogestrinone
  Author: k. pereira de jesus-tran, p. -l. cote, l. cantin, j. blanchet, f. labrie, r. breton
  Keywords: androgen receptor, ligand binding domain, thg, agonist, designer androgen
  
• 2b0l.pdb. dna binding protein 14-sep-05 2b0l
  Title: c-terminal dna binding domain of transcriptional pleiotropic repressor cody.
  Author: v. m. levdikov, e. blagova, p. joseph, a. l. sonenshein, a. j. wilkinson
  Keywords: dna-binding; nucleotide-binding; repressor; transcription regulation; winged hth motif.
  
• 2b18.pdb. transcription 15-sep-05 2b18
  Title: n-terminal gaf domain of transcriptional pleiotropic repressor cody.
  Author: v. m. levdikov, e. blagova, p. joseph, a. l. sonenshein, a. j. wilkinson
  Keywords: dna-binding; nucleotide-binding; repressor; transcription regulation; gaf domain; branched chain amino acid binding.
  
• 2bld.pdb. adenovirus 01-mar-05 2bld (cryo-electron microscopy)
  Title: the quasi-atomic model of human adenovirus type 5 capsid (part 1)
  Author: c. m. s. fabry, m. rosa-calatrava, j. f. conway, c. zubieta, s. cusack, r. w. h. ruigrok, g. schoehn
  Keywords: minor capsid protein, quasi atomic, structure, cryo-electron microscopy
  
• 2bvi.pdb. adenovirus 27-jun-05 2bvi (cryo-electron microscopy)
  Title: the quasi-atomic model of human adenovirus type 5 capsid (part 2)
  Author: c. m. s. fabry, m. rosa-calatrava, j. f. conway, c. zubieta, s. cusack, r. w. h. ruigrok, g. schoehn
  Keywords: minor capsid protein, quasi atomic, structure, cryo-electron microscopy
  
• 2c7n.pdb. ubiquitin complex 25-nov-05 2c7n Zn
  Title: human rabex-5 residues 1-74 in complex with ubiquitin
  Author: l. penengo, m. mapelli, a. g. murachelli, s. confalioneri, l. magri, a. musacchio, p. p. di fiore, s. polo, t. r. schneider
  Keywords: endocytosis, nuclear protein, polyprotein, ubl conjugation, ubiquitin complex
  
• 2c9g.pdb. virus/viral protein 12-dec-05 2c9g (cryo-electron microscopy)
  Title: the quasi-atomic model of the adenovirus type 3 penton base dodecahedron
  Author: p. fuschiotti, g. schoehn, p. fender, c. m. s. fabry, e. a. hewat, j. chroboczek, r. w. h. ruigrok, j. f. conway
  Keywords: dodecahedron, penton, fibre, virus, viral protein, late protein
  
• 2cdn.pdb. transferase 25-jan-06 2cdn Mg
  Title: crystal structure of mycobacterium tuberculosis adenylate kinase complexed with two molecules of adp and mg
  Author: m. bellinzoni, a. haouz, m. grana, h. munier-lehmann, p. m. alzari
  Keywords: phosphoryl transfer, associative mechanism, atp-binding, kinase, nucleotide biosynthesis, nucleotide-binding, transferase
  
• 2cfp.pdb. transport 22-feb-06 2cfp Hg
  Title: sugar free lactose permease at acidic ph
  Author: o. mirza, l. guan, g. verner, s. iwata, h. r. kaback
  Keywords: transport mechanism, lactose/h+ symport, sugar transport, transmembrane, formylation
  
• 2cfq.pdb. transport 22-feb-06 2cfq Hg
  Title: sugar free lactose permease at neutral ph
  Author: o. mirza, l. guan, g. verner, s. iwata, h. r. kaback
  Keywords: transport mechanism, lactose/h+ symport, sugar transport, transmembrane, formylation
  
• 2chn.pdb. hydrolase 15-mar-06 2chn Ca Se
  Title: bacteroides thetaiotaomicron hexosaminidase with o- glcnacase activity - nag-thiazoline complex
  Author: r. j. dennis, e. j. taylor, m. s. macauley, k. a. stubbs, j. p. turkenburg, s. j. hart, g. n. black, d. j. vocadlo, g. j. davies
  Keywords: hydrolase, n-acetylglucosamibe
  
• 2ck3.pdb. hydrolase 10-apr-06 2ck3 Mg
  Title: azide inhibited bovine f1-atpase
  Author: m. w. bowler, m. g. montgomery, a. g. w. leslie, j. e. walker
  Keywords: atp phosphorylase (h+ transporting), atp synthase, f1fo atp synthase, f1-atpase, hydrolase, atp synthesis, atp-binding, azide
  
• 2cki.pdb. hydrolase 19-apr-06 2cki Zn Ca Se
  Title: structure of ulilysin, a member of the pappalysin family of metzincin metalloendopeptidases.
  Author: c. tallant, r. garcia-castellanos, j. seco, u. baumann, f. x. gomis-ruth
  Keywords: hypothetical protein, hydrolase, igf, cancer, metzincin, pappalysin, igfbp protease
  
• 2ckl.pdb. transcription regulation complex 20-apr-06 2ckl I Zn
  Title: ring1b-bmi1 e3 catalytic domain structure
  Author: g. buchwald, p. van der stoop, o. weichenrieder, a. perrakis, m. van lohuizen, t. k. sixma
  Keywords: repressor, zinc- finger, ring domain, transcription, transcription regulation complex
  
• 2cky.pdb. nucleic acid 24-apr-06 2cky Mg Os
  Title: structure of the arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand
  Author: s. thore, m. leibundgut, n. ban
  
  
• 2clq.pdb. transferase 28-apr-06 2clq
  Title: structure of mitogen-activated protein kinase kinase kinase 5
  Author: g. bunkoczi, e. salah, o. fedorov, a. pike, o. gileadi, f. von delft, c. arrowsmith, a. edwards, m. sundstrom, j. weigelt, s. knapp
  Keywords: atp-binding, metal-binding, serine/threonine-protein kinase, kinase, apoptosis, magnesium, map kinase, protein kinase, phosphorylation, nucleotide-binding
  
• 2cqs.pdb. transferase 20-may-05 2cqs
  Title: crystal structure of cellvibrio gilvus cellobiose phosphorylase crystallized from ammonium sulfate
  Author: m. hidaka, m. kitaoka, k. hayashi, t. wakagi, h. shoun, s. fushinobu
  Keywords: (alpha/alpha)6 barrel
  
• 2cqt.pdb. transferase 20-may-05 2cqt
  Title: crystal structure of cellvibrio gilvus cellobiose phosphorylase crystallized from sodium/potassium phosphate
  Author: m. hidaka, m. kitaoka, k. hayashi, t. wakagi, h. shoun, s. fushinobu
  Keywords: (alpha/alpha)6 barrel
  
• 2cv3.pdb. hydrolase 31-may-05 2cv3
  Title: crystal structure of porcine pancreatic elastase complexed with a macroclyclic peptide inhibitor
  Author: t. kinoshita, t. tada, t. kitatani
  Keywords: macrocyclic peptide
  
• 2d0t.pdb. oxidoreductase 08-aug-05 2d0t Fe
  Title: crystal structure of 4-phenylimidazole bound form of human indoleamine 2,3-dioxygenase
  Author: h. sugimoto, s. oda, t. otsuki, t. hino, t. yoshida, y. shiro
  
  
• 2d0u.pdb. oxidoreductase 08-aug-05 2d0u Fe
  Title: crystal structure of cyanide bound form of human indoleamine 2,3-dioxygenase
  Author: h. sugimoto, s. oda, t. otsuki, t. hino, t. yoshida, y. shiro
  
  
• 2d2z.pdb. transport protein 21-sep-05 2d2z
  Title: crystal structure of soluble form of clic4
  Author: y. f. li, d. f. li, d. c. wang
  Keywords: clic4, crystal structure
  
• 2d5i.pdb. oxidoreductase 02-nov-05 2d5i
  Title: the crystal structure of azor (azo reductase) from escherichia coli
  Author: k. ito, m. tanokura
  
  
• 2d68.pdb. cell cycle 10-nov-05 2d68
  Title: structure of the n-terminal domain of fop (fgfr1op) protein
  Author: a. mikolajka
  Keywords: dimer
  
• 2d69.pdb. lyase 10-nov-05 2d69
  Title: crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from pyrococcus horikoshii ot3 (form-2 crystal)
  Author: e. mizohata, c. mishima, r. akasaka, h. uda, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2deo.pdb. hydrolase 16-feb-06 2deo Se
  Title: 1510-n membrane protease specific for a stomatin homolog from pyrococcus horikoshii
  Author: h. yokoyama, i. matsui
  Keywords: specific for a stomatin homolog, archaea, pyrococcus, thermostable, catalytic dyad
  
• 2dka.pdb. isomerase 07-apr-06 2dka
  Title: crystal structure of n-acetylglucosamine-phosphate mutase, a member of the alpha-d-phosphohexomutase superfamily, in the apo-form
  Author: y. nishitani, d. maruyama, t. nonaka, a. kita, t. a. fukami, t. mio, h. yamada-okabe, t. yamada-okabe, k. miki
  
  
• 2dkc.pdb. isomerase 07-apr-06 2dkc Zn
  Title: crystal structure of n-acetylglucosamine-phosphate mutase, a member of the alpha-d-phosphohexomutase superfamily, in the substrate complex
  Author: y. nishitani, d. maruyama, t. nonaka, a. kita, t. a. fukami, t. mio, h. yamada-okabe, t. yamada-okabe, k. miki
  
  
• 2dkd.pdb. isomerase 07-apr-06 2dkd Zn
  Title: crystal structure of n-acetylglucosamine-phosphate mutase, a member of the alpha-d-phosphohexomutase superfamily, in the product complex
  Author: y. nishitani, d. maruyama, t. nonaka, a. kita, t. a. fukami, t. mio, h. yamada-okabe, t. yamada-okabe, k. miki
  
  
• 2do2.pdb. hydrolase 27-apr-06 2do2
  Title: design of specific inhibitors of phospholipase a2: crystal structure of the complex formed between a group ii cys 49 phospholipase a2 and a designed pentapeptide ala-leu-ala- ser-lys at 2.6a resolution
  Author: n. singh, s. sharma, r. k. somvanshi, s. dey, t. p. singh
  Keywords: synthetic pentapeptide, complex
  
• 2dp4.pdb. hydrolase 05-may-06 2dp4
  Title: crystal structure of the complex formed between proteinase k and a human lactoferrin fragment at 2.9 a resolution
  Author: a. k. singh, n. singh, s. sharma, a. bhushan, t. p. singh
  Keywords: lactoferrin fragment
  
• 2evq.pdb. de novo protein 31-oct-05 2evq (NMR, 43 structures)
  Title: solution structure of hp7, a 12-residue beta hairpin
  Author: n. h. andersen, k. a. olsen, r. m. fesinmeyer
  Keywords: peptide, trp/trp packing
  
• 2ew9.pdb. hydrolase 02-nov-05 2ew9 (NMR, 31 structures)
  Title: solution structure of apowln5-6
  Author: s. ciofi-baffoni, structural proteomics in europe (spine)
  Keywords: ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine
  
• 2exh.pdb. hydrolase 08-nov-05 2exh Ca
  Title: structure of the family43 beta-xylosidase from geobacillus stearothermophilus
  Author: c. brux, k. niefind, d. shallom-shezifi, s. yuval, d. schomburg
  Keywords: hydrolsase, xylosidase, family43
  
• 2exi.pdb. hydrolase 08-nov-05 2exi Ca
  Title: structure of the family43 beta-xylosidase d15g mutant from geobacillus stearothermophilus
  Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
  Keywords: hydrolsase, xylosidase, family43
  
• 2exj.pdb. hydrolase 08-nov-05 2exj Ca
  Title: structure of the family43 beta-xylosidase d128g mutant from geobacillus stearothermophilus in complex with xylobiose
  Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
  Keywords: hydrolsase, xylosidase, family43, xylose
  
• 2exk.pdb. hydrolase 08-nov-05 2exk Ca
  Title: structure of the family43 beta-xylosidase e187g from geobacillus stearothermophilus in complex with xylobiose
  Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
  Keywords: hydrolsase, xylosidase, family43, xylose
  
• 2ez3.pdb. oxidoreductase 10-nov-05 2ez3
  Title: crystal structure analysis of a quinate/shikimate dehydrogenase from corynebacterium glutamicum
  Author: j. schoepe, k. niefind, d. schomburg
  
  
• 2f1o.pdb. oxidoreductase 15-nov-05 2f1o
  Title: crystal structure of nqo1 with dicoumarol
  Author: s. yosef, a. gad, d. orly, t. peter, a. julia, israel structural proteomics center (ispc)
  Keywords: structural genomics, israel structural proteomics center, ispc
  
• 2f2k.pdb. oxidoreductase 17-nov-05 2f2k
  Title: aldose reductase tertiary complex with nadph and deg
  Author: s. j. watowich, m. a. white
  Keywords: glutathione, tertiary complex, dicarboxyethyl glutathione
  
• 2f43.pdb. hydrolase 22-nov-05 2f43 Mg V
  Title: rat liver f1-atpase
  Author: c. chen, a. k. saxena, w. n. simcoke, d. n. garboczi, p. l. pedersen, y. h. ko
  Keywords: f0f1-atpase, oxidative phosphorylation, mitochondria, hydrolase, vanadate
  
• 2f83.pdb. hydrolase 01-dec-05 2f83 Pt
  Title: crystal structure of a human coagulation factor
  Author: e. papagrigoriou, p. mcewan, p. n. walsh, j. emsley
  Keywords: apple domain
  
• 2f8p.pdb. luminescent protein 03-dec-05 2f8p Ca
  Title: crystal structure of obelin following ca2+ triggered bioluminescence suggests neutral coelenteramide as the primary excited state
  Author: z. j. liu, g. a. stepanyuk, e. s. vysotski, j. lee, b. c. wang, southeast collaboratory for structural genomics (secsg)
  Keywords: structural genomics, psi, protein structure initiative, southeast collaboratory for structural genomics, secsg
  
• 2f9c.pdb. structural genomics, unknown function 05-dec-05 2f9c Cs
  Title: crystal structure of ydck from salmonella cholerae. nesg target scr6
  Author: j. benach, y. chen, s. m. vorobiev, s. jayaraman, h. janjua, b. cooper, x. t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: unknown function, psi, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2fcw.pdb. lipid transport/endocytosis/chaperone 12-dec-05 2fcw Na Ca
  Title: structure of a complex between the pair of the ldl receptor ligand-binding modules 3-4 and the receptor associated protein (rap).
  Author: n. beglova, c. fisher, s. c. blacklow
  Keywords: rap, ldlr, escort protein, calcium- binding
  
• 2fcx.pdb. ribonucleic acid 13-dec-05 2fcx Cl K Br
  Title: hiv-1 dis kissing-loop in complex with neamine
  Author: e. ennifar, j. c. paillart, r. marquet, p. dumas
  Keywords: rna, aminoglycoside, antibiotics
  
• 2fcy.pdb. ribonucleic acid 13-dec-05 2fcy Cl K Br
  Title: hiv-1 dis kissing-loop in complex with neomycin
  Author: e. ennifar, j. c. paillart, r. marquet, p. dumas
  Keywords: rna, aminoglycoside, antibiotics
  
• 2fcz.pdb. ribonucleic acid 13-dec-05 2fcz K Br
  Title: hiv-1 dis kissing-loop in complex with ribostamycin
  Author: e. ennifar, j. c. paillart, r. marquet, p. dumas
  Keywords: rna, aminoglycoside, antibiotics
  
• 2fd0.pdb. ribonucleic acid 13-dec-05 2fd0 Cl K Br
  Title: hiv-1 dis kissing-loop in complex with lividomycin
  Author: e. ennifar, j. c. paillart, r. marquet, p. dumas
  Keywords: rna, aminoglycoside, antibiotics
  
• 2fez.pdb. transcription 17-dec-05 2fez
  Title: mycobacterium tuberculosis embr
  Author: k. futterer, l. j. alderwick, g. s. besra
  
  
• 2ff4.pdb. transcription 19-dec-05 2ff4
  Title: mycobacterium tuberculosis embr in complex with low affinity phosphopeptide
  Author: k. futterer, l. j. alderwick, g. s. besra
  
  
• 2fge.pdb. hydrolase, plant protein 21-dec-05 2fge Cl Mg Zn Se
  Title: crystal structure of presequence protease prep from arabidopsis thaliana
  Author: t. eneqvist, k. a. johnson
  
  
• 2fji.pdb. endocytosis/exocytosis 02-jan-06 2fji
  Title: crystal structure of the c-terminal domain of the exocyst subunit sec6p
  Author: s. v. s. mylavarapu, m. munson
  Keywords: exocytosis, tandem helical bundles
  
• 2fqp.pdb. structural genomics, unknown function 18-jan-06 2fqp Zn Se
  Title: crystal structure of (np_880937.1) from bordetella pertussis at 1.80 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
  
• 2fqq.pdb. hydrolase 18-jan-06 2fqq F
  Title: crystal structure of human caspase-1 (cys285->ala, cys362- >ala, cys364->ala, cys397->ala) in complex with 1-methyl-3- trifluoromethyl-1h-thieno[2,3-c]pyrazole-5-carboxylic acid (2-mercapto-ethyl)-amide
  Author: j. m. scheer, j. a. wells, m. j. romanowski
  Keywords: allosteric inhibitor
  
• 2fqr.pdb. hydrolase 18-jan-06 2fqr
  Title: crystal structure of wildtype human caspase-1 in complex with 3-(2-{2-[(cyclohexylmethoxy-hydroxy-methyl)-amino]-1- hydroxy-3-methyl-butylamino}-1-hydroxy-propylamino)- pentane-1,1,4-triol (z-vad-fmk)
  Author: j. m. scheer, j. a. wells, m. j. romanowski
  Keywords: active-site inhibitor, allosteric circuit
  
• 2fqs.pdb. hydrolase 18-jan-06 2fqs
  Title: crystal structure of human caspase-1 (arg286->ala) in complex with 3-(2-{2-[(cyclohexylmethoxy-hydroxy-methyl)- amino]-1-hydroxy-3-methyl-butylamino}-1-hydroxy- propylamino)-pentane-1,1,4-triol (z-vad-fmk)
  Author: j. m. scheer, j. a. wells, m. j. romanowski
  Keywords: active-site inhibitor, allosteric circuit
  
• 2fqu.pdb. hydrolase 18-jan-06 2fqu
  Title: crystal structure of human caspase-1 (glu390->ala) in complex with 3-(2-{2-[(cyclohexylmethoxy-hydroxy-methyl)- amino]-1-hydroxy-3-methyl-butylamino}-1-hydroxy- propylamino)-pentane-1,1,4-triol (z-vad-fmk)
  Author: j. m. scheer, j. a. wells, m. j. romanowski
  Keywords: active-site inhibitor, allosteric circuit
  
• 2fqv.pdb. hydrolase 18-jan-06 2fqv
  Title: crystal structure of human caspase-1 (arg286->ala, glu390- >ala) in complex with 3-(2-{2-[(cyclohexylmethoxy-hydroxy- methyl)-amino]-1-hydroxy-3-methyl-butylamino}-1-hydroxy- propylamino)-pentane-1,1,4-triol (z-vad-fmk)
  Author: j. m. scheer, j. a. wells, m. j. romanowski
  Keywords: active-site inhibitor, allosteric circuit
  
• 2fu4.pdb. dna binding protein 26-jan-06 2fu4 Cl Cd
  Title: crystal structure of the dna binding domain of e.coli fur (ferric uptake regulator)
  Author: l. pecqueur, b. d'autreaux, j. dupuy, y. nicolet, l. jacquamet, b. brutscher, i. michaud-soret, b. bersch
  Keywords: helix-turn-helix
  
• 2fvj.pdb. signaling protein 31-jan-06 2fvj
  Title: a novel anti-adipogenic partial agonist of peroxisome proliferator-activated receptor-gamma (pparg) recruits pparg-coactivator-1 alpha (pgc1a) but potentiates insulin signaling in vitro
  Author: j. benz, e. burgermeister, a. flament, a. schnoebelen, m. stihle, b. gsell, a. rufer, a. ruf, b. kuhn, h. p. maerki, j. mizrahi, e. sebokova, e. niesor, m. meyer
  Keywords: alpha helical sandwich
  
• 2g0g.pdb. transcription activator 13-feb-06 2g0g F
  Title: structure-based drug design of a novel family of ppar partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities
  Author: i. l. lu, y. h. peng, c. f. huang, y. t. lin, j. t. a. hsu, s. y. wu
  
  
• 2g0h.pdb. transcription activator 13-feb-06 2g0h F
  Title: structure-based drug design of a novel family of ppar partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities
  Author: i. l. lu, y. h. peng, c. f. huang, y. t. lin, j. t. a. hsu, s. y. wu
  
  
• 2g5c.pdb. oxidoreductase 22-feb-06 2g5c Se
  Title: crystal structure of prephenate dehydrogenase from aquifex aeolicus
  Author: w. sun, s. singh, r. zhang, j. l. turnbull, d. christendat
  Keywords: tyra
  
• 2g88.pdb. recombination 02-mar-06 2g88 Mg
  Title: msreca-datp complex
  Author: r. krishna, g. p. manjunath, p. kumar, a. surolia, n. r. chandra, k. muniyappa, m. vijayan
  Keywords: dna-repair
  
• 2g8f.pdb. hydrolase/rna/dna 02-mar-06 2g8f Cl Mg
  Title: b. halodurans rnase h catalytic domain e188a mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h rna/dna hybrid
  
• 2g8h.pdb. hydrolase/rna/dna 02-mar-06 2g8h Mg V
  Title: b. halodurans rnase h catalytic domain d192n mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2g8i.pdb. hydrolase/rna/dna 02-mar-06 2g8i Cl Mn
  Title: b. halodurans rnase h catalytic domain d192n mutant in complex with mn2+ and rna/dna hybrid (non-p nick at the active site)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2g8k.pdb. hydrolase/rna/dna 02-mar-06 2g8k Ca
  Title: b. halodurans rnase h catalytic domain d192n mutant in complex with ca2+ and rna/dna hybrid (non-p nick at the active site)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2g8u.pdb. hydrolase/rna/dna 03-mar-06 2g8u Mg
  Title: b. halodurans rnase h catalytic domain d132n mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2g8v.pdb. hydrolase/rna/dna 03-mar-06 2g8v Mg
  Title: b. halodurans rnase h catalytic domain e188a mutant in complex with mg2+ and rna/dna hybrid (reaction product)
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2g8w.pdb. hydrolase/rna/dna 03-mar-06 2g8w Ca
  Title: b. halodurans rnase h catalytic domain e188a mutant in complex with ca2+ and rna/dna hybrid
  Author: m. nowotny, w. yang
  Keywords: ribonuclease h, rna/dna hybrid
  
• 2ga9.pdb. transferase 08-mar-06 2ga9 Ca
  Title: crystal structure of the heterodimeric vaccinia virus polyadenylate polymerase with bound atp-gamma-s
  Author: c. m. moure, b. r. bowman, p. d. gershon, f. a. quiocho
  Keywords: nucleotidyltransferase, poxvirus, heterodimer, processivity
  
• 2gaf.pdb. transferase 08-mar-06 2gaf Se
  Title: crystal structure of the vaccinia polyadenylate polymerase heterodimer (apo form)
  Author: c. m. moure, b. r. bowman, p. d. gershon, f. a. quiocho
  Keywords: pox virus, nucleotidyltransferase, heterodimer, processivity
  
• 2gbj.pdb. protein binding 10-mar-06 2gbj
  Title: crystal structure of the 9-10 8 glycine insertion mutant of ubiquitin.
  Author: d. m. ferraro, d. j. ferraro, s. ramaswamy, a. d. robertson
  
  
• 2gbk.pdb. protein binding 10-mar-06 2gbk
  Title: crystal structure of the 9-10 moad insertion mutant of ubiquitin
  Author: d. m. ferraro, d. j. ferraro, s. ramaswamy, a. d. robertson
  
  
• 2gbm.pdb. protein binding 10-mar-06 2gbm As
  Title: crystal structure of the 35-36 8 glycine insertion mutant of ubiquitin
  Author: d. m. ferraro, d. j. ferraro, s. ramaswamy, a. d. robertson
  
  
• 2gbn.pdb. protein binding 10-mar-06 2gbn
  Title: crystal structure of the 35-36 8 glycine insertion mutant of ubiquitin
  Author: d. m. ferraro, d. j. ferraro, s. ramaswamy, a. d. robertson
  
  
• 2gbr.pdb. protein binding 10-mar-06 2gbr Cd
  Title: crystal structure of the 35-36 moad insertion mutant of ubiquitin
  Author: d. m. ferraro, d. j. ferraro, s. ramaswamy, a. d. robertson
  
  
• 2gd4.pdb. hydrolase 15-mar-06 2gd4 Ca
  Title: crystal structure of the antithrombin-s195a factor xa- pentasaccharide complex
  Author: d. j. johnson, w. li, t. e. adams, j. a. huntington
  Keywords: michaelis complex
  
• 2gdj.pdb. recombination 16-mar-06 2gdj Mg
  Title: delta-62 rada recombinase in complex with amp-pnp and magnesium
  Author: y. wu, x. qian, y. he, y. luo
  Keywords: protein-atp complex
  
• 2gf7.pdb. metal binding protein 21-mar-06 2gf7
  Title: double tudor domain structure
  Author: y. huang, j. fang, m. t. bedford, y. zhang, r. m. xu
  Keywords: tudor tandem, trimethyl histone h3 lysine 4, trimethyl hisone demethylase, jmjc domain containing
  
• 2gfa.pdb. metal binding protein 21-mar-06 2gfa
  Title: double tudor domain complex structure
  Author: y. huang, j. fang, m. t. bedford, y. zhang, r. m. xu
  Keywords: tudor tandem, trimethyl histone h3 lysine 4, jmjc domain containing
  
• 2gfp.pdb. membrane protein 22-mar-06 2gfp
  Title: structure of the multidrug transporter emrd from escherichia coli
  Author: y. yin, x. he, p. szewczyk, t. nguyen, g. chang
  
  
• 2ggt.pdb. chaperone 24-mar-06 2ggt Cl Ni
  Title: crystal structure of human sco1 complexed with nickel.
  Author: l. banci, i. bertini, v. calderone, s. ciofi-baffoni, s. mangani, m. martinelli, p. palumaa, s. wang
  Keywords: cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion
  
• 2gh8.pdb. virus/viral protein 26-mar-06 2gh8
  Title: x-ray structure of a native calicivirus
  Author: r. chen
  Keywords: vesivirus, icosahedral t=3 capsid, domain swapping, n-terminal arm, shell domain, protruding domain
  
• 2gjl.pdb. oxidoreductase 31-mar-06 2gjl
  Title: crystal structure of 2-nitropropane dioxygenase
  Author: s. w. suh
  Keywords: 2-nitropropane, fmn
  
• 2gjn.pdb. oxidoreductase 31-mar-06 2gjn
  Title: crystal structure of 2-nitropropane dioxygenase complexed with fmn and substrate
  Author: s. w. suh
  Keywords: fmn, 2-nitropropane, substrate
  
• 2gke.pdb. isomerase 01-apr-06 2gke
  Title: crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor ll-azidap
  Author: b. pillai, m. m. cherney, c. m. diaper, a. sutherland, j. s. blanchard, j. c. vederas, m. n. g. james
  Keywords: covalently bound inhibitor
  
• 2gkj.pdb. isomerase 02-apr-06 2gkj
  Title: crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor dl-azidap
  Author: b. pillai, m. m. cherney, c. m. diaper, a. sutherland, j. s. blanchard, j. c. vederas, m. n. g. james
  Keywords: covalently bound inhibitor
  
• 2glk.pdb. isomerase 05-apr-06 2glk Mn
  Title: high-resolution study of d-xylose isomerase, 0.94a resolution.
  Author: a. k. katz, h. l. carrell, b. l. hanson, j. m. harp, j. p. glusker, g. j. bunick
  Keywords: beta-alpha-barrels, two metal binding sites
  
• 2gpz.pdb. hydrolase 19-apr-06 2gpz
  Title: transthyretin-like protein from salmonella dublin
  Author: a. m. buckle, r. h. p. law, j. c. whisstock
  
  
• 2gqr.pdb. ligase 21-apr-06 2gqr Mg Se
  Title: saicar synthetase complexed with adp-mg2+
  Author: n. d. ginder, r. b. honzatko
  Keywords: ade2, ade1, nucleotide complex, octahedral magnesium coordination, alternate folding
  
• 2gqs.pdb. ligase 21-apr-06 2gqs Mg
  Title: saicar synthetase complexed with cair-mg2+ and adp
  Author: n. d. ginder, r. b. honzatko
  Keywords: ade2, ade1, nucleotide complex, magnesium coordination, metal coordination
  
• 2gsh.pdb. lyase 26-apr-06 2gsh Mg
  Title: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium
  Author: y. patskovsky, v. n. malashkevich, j. m. sauder, m. dickey, j. m. adams, s. r. wasserman, j. gerlt, s. c. almo, new york structural genomics research consortium (nysgrc)
  Keywords: structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
  
• 2gsi.pdb. immune system 26-apr-06 2gsi Na
  Title: crystal structure of a murine fab in complex with an 11 residue peptide derived from staphylococcal nuclease
  Author: a. a. armstrong, l. m. amzel
  Keywords: peptide, igg, staphylococcal nuclease
  
• 2gtc.pdb. structural genomics, unknown function 27-apr-06 2gtc Se
  Title: crystal structure of the hypthetical protein from bacillus cereus (atcc 14579). northeast structural genomics target bcr11
  Author: j. seetharaman, m. abashidze, f. forouhar, k. conover, b. cooper, l. - c. ma, r. xiao, t. b acton, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: psi, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2gub.pdb. isomerase 29-apr-06 2gub
  Title: crystal structure of metal free d-xylose isomerase.
  Author: h. l. carrell, a. k. katz, j. p. glusker
  Keywords: beta-alpha-barrel, metal-free, inactive enzyme, sugar interconversion
  
• 2gug.pdb. oxidoreductase 30-apr-06 2gug
  Title: nad-dependent formate dehydrogenase from pseudomonas sp.101 in complex with formate
  Author: e. v. filippova, k. m. polyakov, t. v. tikhonova, k. m. boiko, v. i. tishkov, v. o. popov
  Keywords: nad+(a))
  
• 2guu.pdb. structural genomics, unknown function 01-may-06 2guu
  Title: crystal structure of plasmodium vivax orotidine 5- monophosphate decarboxylase with 6-aza-ump bound
  Author: a. dong, j. lew, y. zhao, e. sundararajan, g. wasney, m. vedadi, i. koeieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, e. f. pai, l. kotra, a. bochkarev, r. hui, m. amani, structural genomics consortium (sgc)
  Keywords: 6-aza-ump, structural genomics, structural genomics consortium, sgc
  
• 2gv9.pdb. transferase 02-may-06 2gv9 Hg
  Title: crystal structure of the herpes simplex virus type 1 dna polymerase
  Author: s. liu
  
  
• 2gve.pdb. isomerase 02-may-06 2gve Co D (neutron diffraction)
  Title: time-of-flight neutron diffraction structure of d-xylose isomerase
  Author: a. k. katz, x. li, h. l. carrell, b. l. hanson, p. langan, l. coates, b. p. schoenborn, j. p. glusker, g. j. bunick
  Keywords: two metal binding sites, protonation states of residues
  
• 2gvk.pdb. structural genomics, unknown function 02-may-06 2gvk Cl Na Se
  Title: crystal structure of (pc04261d) from bacteriodes thetaiotaomicron vpi-5482 at 1.60 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: , structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
  
• 2gw6.pdb. protein binding 03-may-06 2gw6 (NMR, 20 structures)
  Title: nmr structure of the human trna endonuclease sen15 subunit
  Author: j. song, j. l. markley, center for eukaryotic structural genomics (cesg)
  Keywords: trna endonuclease, structural genomics, psi, protein structure initiative, center for eukaryotic structural genomics, cesg
  
• 2gwh.pdb. transferase 04-may-06 2gwh Cl U
  Title: human sulfotranferase sult1c2 in complex with pap and pentachlorophenol
  Author: w. tempel, p. pan, l. dombrovski, a. al-hassani, m. vedadi, p. loppnau, j. weigelt, l. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
  Keywords: sulfate conjugation, pentachlorophenol, pap, pesticide, structural genomics, structural genomics consortium, sgc
  
• 2gx8.pdb. structural genomics, unknown function 08-may-06 2gx8 Zn
  Title: the crystal stucture of bacillus cereus protein related to nif3
  Author: g. minasov, j. s. bruzelle, l. shuvalova, i. i. vorontsov, f. r. collart, w. f. anderson, mcsg, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, unknown function, nif3 related protein, psi, protein structure initiative, midwest center for structural genomics, mcsg