Recent PDB releases or updates: week of 14 April 2006
- 1u0y.pdb.
chaperone 14-jul-04 1u0y
Title: n-domain of grp94, lacking the charged domain, in complex with the novel ligand n-propyl carboxyamido adenosine
Author: d. t. gewirth, r. m. immormino
Keywords: hsp90, bergerat, chaperone, endoplasmic reticulum, neca, adenosine, npca
- 1wpq.pdb.
oxidoreductase 10-sep-04 1wpq
Title: ternary complex of glycerol 3-phosphate dehydrogenase 1 with nad and dihydroxyactone
Author: x. ou, x. han, z. rao
Keywords: gpd1, dehydrogenase, dihydroxyactone complex
- 1wvw.pdb.
transferase 27-dec-04 1wvw
Title: crystal structures of kinase domain of dap kinase in complex with small molecular inhibitors
Author: y. ueda, h. ogata, a. yamakawa, y. higuchi
Keywords: apoptosis
- 1wvx.pdb.
transferase 27-dec-04 1wvx
Title: crystal structures of kinase domain of dap kinase in complex with small molecular inhibitors
Author: y. ueda, h. ogata, a. yamakawa, y. higuchi
Keywords: apoptosis, staurosporine
- 1wvy.pdb.
transferase 27-dec-04 1wvy
Title: crystal structures of kinase domain of dap kinase in complex with small molecular inhibitors
Author: y. ueda, h. ogata, a. yamakawa, y. higuchi
Keywords: apoptosis, staurosporine
- 1wx2.pdb.
oxidoreductase/metal transport 19-jan-05 1wx2
Cu
Title: crystal structure of the oxy-form of the copper-bound streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of hydrogenperoxide
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, type-3 copper, dioxygen, copper transfer
- 1wx3.pdb.
oxidoreductase/metal transport 19-jan-05 1wx3
Cu
Title: crystal structure of the met-form of the copper-bound streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, type-3 copper
- 1wx4.pdb.
oxidoreductase/metal transport 19-jan-05 1wx4
Cu
Title: crystal structure of the oxy-form of the copper-bound streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of dithiothreitol
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, type-3 copper, dioxygen
- 1wx5.pdb.
oxidoreductase/metal transport 19-jan-05 1wx5
Cl Na
Title: crystal structure of the copper-free streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein in the monoclinic crystal
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, flexibility
- 1wxc.pdb.
oxidoreductase/metal transport 20-jan-05 1wxc
Title: crystal structure of the copper-free streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, type-3 copper
- 1wza.pdb.
hydrolase 03-mar-05 1wza
Ca
Title: crystal structure of alpha-amylase from h.orenii
Author: n. sivakumar, k. swaminathan, n. li
Keywords: hydrolase, alpha amylase, halophilic, thermophilic
- 1x0v.pdb.
oxidoreductase 30-mar-05 1x0v
Se
Title: crystal structure of homo sapien glycerol-3-phosphate dehydrogenase 1
Author: z. rao, x. ou
Keywords: gxgxxg motif
- 1x0x.pdb.
oxidoreductase 31-mar-05 1x0x
Title: co-structure of homo sspiens glycerol-3-phosphate dehydrogenase 1 complex with nad
Author: z. rao, x. ou
Keywords: co-enzyme, gpd1
- 1x86.pdb.
signaling protein/membrane protein 17-aug-04 1x86
Title: crystal structure of the dh/ph domains of leukemia- associated rhogef in complex with rhoa
Author: r. kristelly, g. gao, j. j. tesmer
Keywords: beta sandwich (ph), alpha/beta (rhoa)
- 1xes.pdb.
transferase 12-sep-04 1xes
Title: crystal structure of stilbene synthase from pinus sylvestris
Author: s. h. ng, d. chirgadze, d. spiteller, t. l. li, j. b. spencer, t. l. blundell
- 1xet.pdb.
transferase 12-sep-04 1xet
Title: crystal structure of stilbene synthase from pinus sylvestris, complexed with methylmalonyl coa
Author: s. h. ng, d. chirgadze, d. spiteller, t. l. li, j. b. spencer, t. l. blundell
- 1y0h.pdb.
structural genomics, unknown function 15-nov-04 1y0h
Title: structure of rv0793 from mycobacterium tuberculosis
Author: m. j. lemieux, c. ference, m. m. cherney, m. wang, c. garen, m. n. james, tb structural genomics consortium (tbsgc)
Keywords: alpha+beta sandwich with antiparallel beta-sheet, structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 1yv8.pdb.
plant protein 15-feb-05 1yv8
(NMR, 20 structures)
Title: solution structure of crambin in acetone/water mixed solvent
Author: h. -c. ahn, j. l. markley
Keywords: mixed organic/aqueous solvent
- 1yva.pdb.
plant protein 15-feb-05 1yva
(NMR, 20 structures)
Title: nmr solution structure of crambin in dpc micelles
Author: h. -c. ahn, j. l. markley
Keywords: dpc, micelles
- 1yx1.pdb.
structural genomics, unknown function 19-feb-05 1yx1
Na Se
Title: x-ray crystal structure of hypothetical protein pa2260 from pseudomonas aeruginosa
Author: j. osipiuk, x. xu, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, pa2260, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 1zab.pdb.
hydrolase 06-apr-05 1zab
Zn
Title: crystal structure of mouse cytidine deaminase complexed with 3-deazauridine
Author: a. h. teh
Keywords: cytidine deaminase, zinc, 3-deazauridine, substrate dissociation
- 1zaf.pdb.
transcription/transferase 06-apr-05 1zaf
Br
Title: crystal structure of estrogen receptor beta complexed with 3-bromo-6-hydroxy-2-(4-hydroxy-phenyl)-inden-1-one
Author: r. e. mcdevitt, m. s. malamas, e. s. manas, r. j. unwalla, z. b. xu, c. p. miller, h. a. harris
Keywords: estrogen receptor beta, er-beta, er, estrogen, nuclear receptor, transcription factor, agonist
- 1zet.pdb.
replication/dna 19-apr-05 1zet
Mg Br
Title: x-ray data do not support hoogsteen base-pairing during replication by human polymerase iota
Author: j. wang
Keywords: dna, dttp, statistical dyad
- 1zfs.pdb.
metal binding protein 20-apr-05 1zfs
Ca
(NMR, 19 structures)
Title: solution structure of s100a1 bound to calcium
Author: n. t. wright, k. m. varney, d. j. weber
Keywords: noncovalent homodimer, x-type 4 helix bundle, calcium binding, conformational change
- 1zkf.pdb.
isomerase 02-may-05 1zkf
Title: cyrstal structure of human cyclophilin-a in complex with suc-agpf-pna
Author: e. z. eisenmesser, v. thai, e. pozharski, d. kern
Keywords: cyclophilin-a, cyclophilin, ppiase, prolyl-isomerase, isomerase
- 2a0a.pdb.
allergen 16-jun-05 2a0a
(NMR, 10 structures)
Title: solution structure of der f 13, group 13 allergen from house dust mites
Author: s. l. chan, y. k. mok
Keywords: helix
- 2af1.pdb.
deoxyribonucleic acid 25-jul-05 2af1
Title: structure of the dna coiled-coil formed by d(cgatatatatat)
Author: d. de luchi, v. tereshko, c. gouyette, j. a. subirana
Keywords: coiled-coil
- 2ahk.pdb.
oxidoreductase/metal transport 28-jul-05 2ahk
Cu
Title: crystal structure of the met-form of the copper-bound streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein obtained by soking in cupric sulfate for 6 months
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, copper
- 2ahl.pdb.
oxidoreductase/metal transport 28-jul-05 2ahl
Cu
Title: crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein
Author: y. matoba, t. kumagai, a. yamamoto, h. yoshitsu, m. sugiyama
Keywords: binary complex, copper
- 2alj.pdb.
cell cycle 05-aug-05 2alj
(NMR, 25 structures)
Title: structure of the cis confomer of the major extracytoplasmic domain of the bacterial cell division protein divib from geobacillus stearothermophilus
Author: s. a. robson, g. f. king
Keywords: divib, ftsq, divisome
- 2anl.pdb.
hydrolase 11-aug-05 2anl
Title: x-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor
Author: j. c. clemente, l. govindasamy, a. madabushi, s. z. fisher, r. e. moose, c. a. yowell, k. hidaka, t. kimura, y. hayashi, y. kiso, m. agbandje- mckenna, j. b. dame, b. m. dunn, r. mckenna
Keywords: plasmepsin 4, x-ray structure, aspartic protease
- 2anz.pdb.
oxidoreductase 11-aug-05 2anz
Fe
Title: cytochrome c peroxidase in complex with 2,6-diaminopyridine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2aqd.pdb.
oxidoreductase 17-aug-05 2aqd
Fe
Title: cytochrome c peroxidase (ccp) in complex with 2,5- diaminopyridine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as1.pdb.
oxidoreductase 22-aug-05 2as1
Fe
Title: cytochrome c peroxidase in complex with thiopheneamidine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as2.pdb.
oxidoreductase 22-aug-05 2as2
Fe
Title: cytochrome c peroxidase in complex with 2-iminopiperidine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as3.pdb.
oxidoreductase 22-aug-05 2as3
K Fe
Title: cytochrome c peroxidase in complex with phenol
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as4.pdb.
oxidoreductase 22-aug-05 2as4
F K Fe
Title: cytochrome c peroxidase in complex with 3-fluorocatechol
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as6.pdb.
oxidoreductase 22-aug-05 2as6
Fe
Title: cytochrome c peroxidase in complex with cyclopentylamine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
Keywords: peroxidase, model binding site
- 2as9.pdb.
hydrolase 23-aug-05 2as9
Zn
Title: functional and structural characterization of spl proteases from staphylococcus aureus
Author: g. m. popowicz, g. dubin, j. stec-niemczyk, a. czarny, a. dubin, j. potempa, t. a. holak
Keywords: trypsin-like fold, staphylococcus aureus
- 2ava.pdb.
biosynthetic protein 29-aug-05 2ava
(NMR, 20 structures)
Title: solution structure of stearoyl-acyl carrier protein
Author: g. a. zornetzer, b. g. fox, j. l. markley
- 2b5h.pdb.
oxidoreductase 28-sep-05 2b5h
Fe
Title: 1.5 a resolution crystal structure of recombinant r. norvegicus cysteine dioxygenase
Author: c. r. simmons, q. liu, q. huang, q. hao, t. p. begley, p. a. karplus, m. h. stipanuk
Keywords: jelly-roll topology, cupin fold, tetrahedral iron coordination
- 2b5r.pdb.
hydrolase/hydrolase inhibitor 29-sep-05 2b5r
Title: 1b lactamase / b lactamase inhibitor
Author: o. rahat, s. albeck, r. meged, o. dym, g. screiber, israel structural proteomics center (ispc)
Keywords: structural genomics, israel structural proteomics center, ispc
- 2b5v.pdb.
oxidoreductase 29-sep-05 2b5v
Title: crystal structure of glucose dehydrogenase from haloferax mediterranei
Author: k. l. britton, p. j. baker, m. fisher, s. ruzheinikov, d. j. gilmour, m. - j. bonete, j. ferrer, c. pire, j. esclapez, d. w. rice
- 2b5w.pdb.
oxidoreductase 29-sep-05 2b5w
K Zn
Title: crystal structure of d38c glucose dehydrogenase mutant from haloferax mediterranei
Author: k. l. britton, p. j. baker, m. fisher, s. ruzheinikov, d. j. gilmour, m. - j. bonete, j. ferrer, c. pire, j. esclapez, d. w. rice
- 2b7j.pdb.
metal binding protein 04-oct-05 2b7j
Cu
Title: crystal structure of yeast sco1 with copper bound
Author: c. abajian, a. c. rosenzweig
Keywords: cytochrome c oxidase, sco, sco1
- 2b7k.pdb.
metal binding protein 04-oct-05 2b7k
Pt
Title: crystal structure of yeast sco1
Author: c. abajian, a. c. rosenzweig
Keywords: cytochrome c oxidase, sco, sco1
- 2bks.pdb.
hydrolase 10-feb-05 2bks
Title: crystal structure of renin-pf00074777 complex
Author: n. a. powell, e. h. clay, d. d. holsworth, j. j. edmunds, j. w. bryant, j. m. ryan, m. jalaie, e. zhang
Keywords: aspartyl protease, glycoprotein, hydrolase, plasma, signal, zymogen, polymorphism
- 2bkt.pdb.
hydrolase 18-feb-05 2bkt
Title: crystal structure of renin-pf00257567 complex
Author: n. a. powell, e. h. clay, d. d. holsworth, j. j. edmunds, j. w. bryant, j. m. ryan, m. jalaie, e. zhang
Keywords: aspartyl protease, hydrolase
- 2boh.pdb.
complex (hydrolase/inhibitor) 11-apr-05 2boh
Cl Ca
Title: crystal structure of factor xa in complex with compound "1"
Author: m. nazare, d. w. will, h. matter, h. schreuder, k. ritter, m. urmann, m. essrich, a. bauer, m. wagner, j. czech, v. laux, v. wehner
Keywords: repeat, serine protease, vitamin k, zymogen, hydrolase-inhibitor complex
- 2brv.pdb.
lyase 03-may-05 2brv
Title: crystal structure of streptococcus pneumoniae hyaluronate lyase from 70percent saturated malonate.
Author: d. j. rigden, m. j. jedrzejas
Keywords: cell wall, lyase, peptidoglycan-anchor
- 2brw.pdb.
lyase 03-may-05 2brw
Title: crystal structure of streptococcus pneumoniae hyaluronate lyase from 30percent pegmme.
Author: d. j. rigden, j. e. littlejohn, m. j. jedrzejas
Keywords: cell wall, lyase, peptidoglycan-anchor
- 2c26.pdb.
hydrolase 26-sep-05 2c26
Ca
Title: structural basis for the promiscuous specificity of the carbohydrate-binding modules from the beta-sandwich super family
Author: s. najmudin, c. i. p. d. guerreiro, a. l. carvalho, d. n. bolam, j. a. m. prates, m. a. s. correia, v. d. alves, l. m. a. ferreira, m. j. romao, h. j. gilbert, c. m. g. a. fontes
Keywords: pkd domain, cbm44, carbohydrate binding module, beta-sandwich proteins, cellulosome, hydrolase
- 2cca.pdb.
oxidoreductase 16-jan-06 2cca
Fe
Title: crystal structure of the catalase-peroxidase (katg) and s315t mutant from mycobacterium tuberculosis
Author: h. yu, j. c. sacchettini
Keywords: katg, heme, peroxidase, oxidoreductase, hydrogen peroxide, iron, metal-binding, organic radical
- 2ccd.pdb.
oxidoreductase 16-jan-06 2ccd
Fe
Title: crystal structure of the catalase-peroxidase (katg) and s315t mutant from mycobacterium tuberculosis
Author: h. yu, j. c. sacchettini
Keywords: katg, heme, peroxidase, oxidoreductase, hydrogen peroxide, iron, metal-binding, organic radical
- 2cce.pdb.
four helix bundle 16-jan-06 2cce
Title: parallel configuration of pli e20s
Author: m. k. yadav, l. j. leman, d. j. price, c. l. brooks iii, c. d. stout, m. r. ghadiri
Keywords: antiparallel, parallel, pli, dna- binding, nuclear protein, transcription, transcription regulation, activator, amino-acid biosynthesis
- 2ccf.pdb.
four helix bundle 16-jan-06 2ccf
Title: antiparallel configuration of pli e20s
Author: m. k. yadav, l. j. leman, d. j. price, c. l. brooks iii, c. d. stout, m. r. ghadiri
Keywords: antiparallel, parallel, pli, dna- binding, nuclear protein, transcription, transcription regulation, activator, amino-acid biosynthesis
- 2ccn.pdb.
four helix bundle 16-jan-06 2ccn
Title: pli e20c is antiparallel
Author: m. k. yadav, l. j. leman, d. j. price, c. l. brooks iii, c. d. stout, m. r. ghadiri
Keywords: antiparallel, parallel, pli, dna- binding, nuclear protein, transcription, transcription regulation, activator, amino-acid biosynthesis
- 2cdy.pdb.
oxidoreductase 31-jan-06 2cdy
Mn
Title: manganese superoxide dismutase (mn-sod) from deinococcus radiodurans
Author: r. dennis, e. micossi, j. mccarthy, e. moe, e. gordon, g. leonard, s. mcsweeney
Keywords: deinococcus radiodurans, radiation resistance, oxidoreductase
- 2ce4.pdb.
oxidoreductase 03-feb-06 2ce4
Mn
Title: manganese superoxide dismutase (mn-sod) from deinococcus radiodurans
Author: r. dennis, e. micossi, j. mccarthy, e. moe, e. gordon, g. leonard, s. mcsweeney
Keywords: deinococcus radiodurans, radiation resistance, oxidoreductase
- 2cg4.pdb.
transcription 27-feb-06 2cg4
Mg
Title: structure of e.coli asnc
Author: p. thaw, s. e. sedelnikova, t. muranova, s. wiese, s. ayora, j. c. alonso, a. b. brinkman, j. akerboom, j. van der oost, j. b. rafferty
Keywords: dna binding, ffrp, lrp family, transcription, dna- binding, transcription regulation
- 2cgu.pdb.
transferase 09-mar-06 2cgu
Title: identification of chemically diverse chk1 inhibitors by receptor-based virtual screening
Author: n. foloppe, l. m. fisher, r. howes, a. potter, a. g. s. robertson, a. e. surgenor
Keywords: transferase, ubl conjugation
- 2cgv.pdb.
transferase 09-mar-06 2cgv
Title: identification of chemically diverse chk1 inhibitors by receptor-based virtual screening
Author: n. foloppe, l. m. fisher, r. howes, a. potter, a. g. s. robertson, a. e. surgenor
Keywords: transferase, ubl conjugation
- 2cgw.pdb.
transferase 09-mar-06 2cgw
Title: identification of chemically diverse chk1 inhibitors by receptor-based virtual screening
Author: n. foloppe, l. m. fisher, r. howes, a. potter, a. g. s. robertson, a. e. surgenor
Keywords: transferase, ubl conjugation
- 2cgx.pdb.
transferase 09-mar-06 2cgx
Title: identification of chemically diverse chk1 inhibitors by receptor-based virtual screening
Author: n. foloppe, l. m. fisher, r. howes, a. potter, a. g. s. robertson, a. e. surgenor
Keywords: transferase, ubl conjugation
- 2ch9.pdb.
inhibitor 13-mar-06 2ch9
Zn
Title: crystal structure of dimeric human cystatin f
Author: a. w. schuettelkopf, d. m. f. van aalten
Keywords: cysteine protease inhibtion, n- linked glycan, glycoprotein, thiol protease inhibitor
- 2cj7.pdb.
inhibitor 29-mar-06 2cj7
I
Title: crystal structure of a cell wall invertase inhibitor from tobacco (ph 9.0)
Author: m. hothorn, k. scheffzek
Keywords: four-helix bundle, helical hairpin, inhibitor
- 2cj8.pdb.
inhibitor 29-mar-06 2cj8
I
Title: crystal structure of a cell wall invertase inhibitor from tobacco (ph 9.5)
Author: m. hothorn, k. scheffzek
Keywords: four-helix bundle, helical hairpin, inhibitor
- 2dew.pdb.
hydrolase 18-feb-06 2dew
Ca
Title: crystal structure of human peptidylarginine deiminase 4 in complex with histone h3 n-terminal tail including arg8
Author: k. arita, t. shimizu, h. hashimoto, y. hidaka, m. yamada, m. sato
- 2dex.pdb.
hydrolase 18-feb-06 2dex
Ca
Title: crystal structure of human peptidylarginine deiminase 4 in complex with histone h3 n-terminal peptide including arg17
Author: k. arita, t. shimizu, h. hashimoto, y. hidaka, m. yamada, m. sato
- 2dey.pdb.
hydrolase 18-feb-06 2dey
Ca
Title: crystal structure of human peptidylarginine deiminase 4 in complex with histone h4 n-terminal tail including arg3
Author: k. arita, t. shimizu, h. hashimoto, y. hidaka, m. yamada, m. sato
- 2df6.pdb.
signaling protein 25-feb-06 2df6
Title: crystal structure of the sh3 domain of betapix in complex with a high affinity peptide from pak2
Author: a. hoelz
Keywords: peptide interaction
- 2erv.pdb.
membrane protein 25-oct-05 2erv
Ca
Title: crystal structure of the outer membrane enzyme pagl
Author: l. rutten, j. geurtsen, w. lambert, j. j. m. smolenaers, a. m. bonvin, p. van der ley, m. r. egmond, p. gros, j. tommassen
Keywords: outer membrane, enzyme, hydrolase, lipopolysaccharide
- 2esw.pdb.
signaling protein 27-oct-05 2esw
Cl Hg
Title: atomic structure of the n-terminal sh3 domain of mouse beta pix,p21-activated kinase (pak)-interacting exchange factor
Author: z. rao
Keywords: sh3 domain
- 2eun.pdb.
oxidoreductase 29-oct-05 2eun
Fe
Title: cytochrome c peroxidase (ccp) in complex with 2,4- diaminopyrimidine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2euo.pdb.
oxidoreductase 29-oct-05 2euo
Fe
Title: cytochrome c peroxidase (ccp) in complex with 1-methyl-1- lambda-5-pyridin-3-yl-amine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2eup.pdb.
oxidoreductase 29-oct-05 2eup
Fe
Title: cytochrome c peroxidase (ccp) in complex with 2-amino-5- picoline
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2euq.pdb.
oxidoreductase 29-oct-05 2euq
Fe
Title: cytochrome c peroxydase (ccp) in complex with 3- thienylmethylamine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2eur.pdb.
oxidoreductase 29-oct-05 2eur
Fe
Title: cytochrome c peroxidase (ccp) in complex with 4- pyridylcarbinol
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2eus.pdb.
oxidoreductase 29-oct-05 2eus
Fe
Title: cytochrome c peroxidase (ccp) in complex with benzylamine
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2eut.pdb.
oxidoreductase 29-oct-05 2eut
Fe
Title: cytochrome c peroxidase (ccp) in complex with 2-amino-4- picoline
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2euu.pdb.
oxidoreductase 29-oct-05 2euu
Fe
Title: cytochrome c peroxidase (ccp) in complex with 1h-imidazol-2- ylmethanol
Author: r. brenk, s. w. vetter, s. e. boyce, d. b. goodin, b. k. shoichet
- 2ev0.pdb.
transcription 30-oct-05 2ev0
Cd
Title: bacillus subtilis manganese transport regulator (mntr) bound to cadmium
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2ev5.pdb.
transcription 31-oct-05 2ev5
Ca
Title: bacillus subtilis manganese transport regulator (mntr) bound to calcium
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2ev6.pdb.
transcription 31-oct-05 2ev6
Zn
Title: bacillus subtilis manganese transport regulator (mntr) bound to zinc
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2ex3.pdb.
transferase/replication 07-nov-05 2ex3
Pb
Title: bacteriophage phi29 dna polymerase bound to terminal protein
Author: s. kamtekar, a. j. berman, j. wang, m. de vega, l. blanco, m. salas, t. a. steitz
- 2f4k.pdb.
structural protein 23-nov-05 2f4k
Title: chicken villin subdomain hp-35, k65(nle), n68h, k70(nle), ph9
Author: t. k. chiu, d. r. davies, j. kubelka, j. hofrichter, w. a. eaton
- 2f5c.pdb.
transcription 25-nov-05 2f5c
Mn
Title: bacillus subtilis manganese transport regulator (mntr) bound to manganese, hexagonal crystal form
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2f5d.pdb.
transcription 25-nov-05 2f5d
Mn
Title: bacillus subtilis manganese transport regulator (mntr) bound to manganese, ac conformation, ph 6.5
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2f5e.pdb.
transcription 25-nov-05 2f5e
Mn
Title: bacillus subtilis manganese transport regulator (mntr) bound to manganese, ab conformation, ph 6.5
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2f5f.pdb.
transcription 25-nov-05 2f5f
Mn
Title: bacillus subtilis manganese transport regulator (mntr) bound to manganese, ac conformation, ph 8.5
Author: j. i. kliegman, s. l. griner, j. d. helmann, r. g. brennan, a. glasfeld
Keywords: dna-binding protein, metalloregulatory protein
- 2ff0.pdb.
hormone/growth factor/dna 17-dec-05 2ff0
Zn
(NMR, 16 structures)
Title: solution structure of steroidogenic factor 1 dna binding domain bound to its target sequence in the inhibin alpha- subunit promoter
Author: t. h. little, y. zhang, c. k. matulis, j. weck, z. zhang, a. ramachandran, k. e. mayo, i. radhakrishnan
Keywords: protein-dna complex, monomeric receptor-dna complex
- 2fm2.pdb.
hydrolase 06-jan-06 2fm2
Zn
Title: hcv ns3-4a protease domain complexed with a ketoamide inhibitor, sch446211
Author: m. yi, x. tong, a. skelton, r. chase, t. chen, a. prongay, s. l. bogen, a. k. saksena, f. g. njoroge, r. l. veselenak, r. b. pyles, n. bourne, b. a. malcolm, s. m. lemon
Keywords: hcv, ns3/4a protease, ketoamide inhibitor
- 2fn6.pdb.
transferase 10-jan-06 2fn6
Title: helicobacter pylori psec, aminotransferase involved in the biosynthesis of pseudoaminic acid
Author: m. cygler, v. v. lunin, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: pseudoaminic acid biosynthesis, flagellar modification, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fni.pdb.
transferase 11-jan-06 2fni
Title: psec aminotransferase involved in pseudoaminic acid biosynthesis
Author: m. cygler, a. matte, v. v. lunin, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 2fnu.pdb.
transferase 11-jan-06 2fnu
Title: psec aminotransferase with external aldimine
Author: m. cygler, a. matte, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: structural genomics, montreal- kingston bacterial structural genomics initiative, bsgi
- 2fqa.pdb.
plant protein 17-jan-06 2fqa
(NMR, 20 structures)
Title: violacin a
Author: d. c. ireland, d. j. craik, n. l. daly
Keywords: beta sheet, beta turns
- 2fqw.pdb.
transport protein 18-jan-06 2fqw
Title: pnra from treponema pallidum as purified from e. coli (bound to inosine)
Author: c. a. brautigam, r. k. deka, d. r. tomchick, m. machius, m. v. norgard
Keywords: ligand-binding protein, inosine
- 2fqx.pdb.
transport protein 18-jan-06 2fqx
Title: pnra from treponema pallidum complexed with guanosine
Author: c. a. brautigam, r. k. deka, d. r. tomchick, m. machius, m. v. norgard
Keywords: ligand-binding protein, guanosine, tmpc, tp0319
- 2fqy.pdb.
transport protein 18-jan-06 2fqy
Title: pnra from treponema pallidum complexed with adenosine.
Author: c. a. brautigam, r. k. deka, d. r. tomchick, m. machius, m. v. norgard
Keywords: nucleoside binding protein
- 2ft6.pdb.
electron transport 24-jan-06 2ft6
Cu
Title: structure of cu(ii)azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "ctphpm"
Author: m. j. banfield
Keywords: greek-key beta-barrel
- 2ft7.pdb.
electron transport 24-jan-06 2ft7
Cu
Title: structure of cu(i)azurin at ph 6, with the metal-binding loop sequence "ctfpghsalm" replaced with "ctphpm"
Author: m. j. banfield
Keywords: greek-key beta-barrel
- 2ft8.pdb.
electron transport 24-jan-06 2ft8
Cu
Title: structure of cu(i)azurin, ph8, with the metal-binding loop sequence "ctfpghsalm" replaced with "ctphpm"
Author: m. j. banfield
Keywords: greek-key beta-barrel.
- 2ft9.pdb.
lipid binding protein 24-jan-06 2ft9
Title: crystal structure of axolotl (ambystoma mexicanum) liver bile acid-binding protein bound to cholic acid
Author: s. capaldi, m. guariento, m. perduca, s. m. di pietro, j. a. santome, h. l. monaco
Keywords: liver basic fatty acid- binding protein, axolotl, cholic acid
- 2fta.pdb.
electron transport 24-jan-06 2fta
Cu
Title: structure of cu(ii)azurin with the metal-binding loop sequence "ctfpghsalm" replaced with "ctphpfm"
Author: m. j. banfield
Keywords: greek-key beta-barrel
- 2ftb.pdb.
lipid binding protein 24-jan-06 2ftb
Title: crystal structure of axolotl (ambystoma mexicanum) liver bile acid-binding protein bound to oleic acid
Author: s. capaldi, m. guariento, m. perduca, s. m. di pietro, j. a. santome, h. l. monaco
Keywords: liver basic fatty acid- binding protein, axolotl, oleic acid, babp, lb-fabp
- 2ftc.pdb.
ribosome 24-jan-06 2ftc
(cryo-electron microscopy)
Title: structural model for the large subunit of the mammalian mitochondrial ribosome
Author: j. a. mears, m. r. sharma, r. r. gutell, p. e. richardson, r. k. agrawal, s. c. harvey
Keywords: large ribosomal subunit, ribosomal rna
- 2fts.pdb.
structural protein 24-jan-06 2fts
Title: crystal structure of the glycine receptor-gephyrin complex
Author: e. y. kim, h. schindelin
Keywords: gephyrin, neuroreceptor anchoring
- 2fu3.pdb.
biosynthetic protein/structural protein 25-jan-06 2fu3
Title: crystal structure of gephyrin e-domain
Author: e. y. kim, h. schindelin
Keywords: gephyrin, neuroreceptor anchoring
- 2fva.pdb.
biosynthetic protein 30-jan-06 2fva
(NMR, 20 structures)
Title: structure of 18:0-acp with docked fatty acid
Author: g. a. zornetzer, b. g. fox, j. l. markley
- 2fve.pdb.
biosynthetic protein 30-jan-06 2fve
(NMR, 20 structures)
Title: structure of 10:0-acp (protein alone)
Author: g. a. zornetzer, b. g. fox, j. l. markley
- 2fvf.pdb.
biosynthetic protein 30-jan-06 2fvf
(NMR, 20 structures)
Title: structure of 10:0-acp (protein with docked fatty acid)
Author: g. a. zornetzer, b. g. fox, j. l. markley
- 2fy7.pdb.
transferase 07-feb-06 2fy7
Title: crystal structure of the catalytic domain of the human beta1,4-galactosyltransferase mutant m339h in apo form
Author: b. ramakrishnan, v. ramasamy, p. k. qasba
Keywords: apo enzyme
- 2fya.pdb.
transferase 07-feb-06 2fya
Mn
Title: crystal structure of the catalytic domain of the human beta1, 4-galactosyltransferase mutant m339h complex with manganese
Author: b. ramakrishnan, v. ramasamy, p. k. qasba
Keywords: mn binding
- 2fyb.pdb.
transferase 07-feb-06 2fyb
Mn
Title: crystal structure of the catalytic domain of the human beta1,4-galactosyltransferase mutant m339h in complex with mn and udp-galactose in open conformation
Author: b. ramakrishnan, v. ramasamy, p. k. qasba
Keywords: complex with udp-galactose and mn, open conformation
- 2fyc.pdb.
transferase 07-feb-06 2fyc
Ca
Title: crystal structure of the catalytic domain of bovine beta1,4- galactosyltransferase-i in complex with alpha-lactalbumin, ca and udp-galactose
Author: b. ramakrishnan, v. ramasamy, p. k. qasba
Keywords: m344h mutation, ca binding
- 2fyd.pdb.
transferase 07-feb-06 2fyd
Mn Ca
Title: catalytic domain of bovine beta 1, 4-galactosyltransferase in complex with alpha-lactalbumin, glucose, mn, and udp-n- acetylgalactosamine
Author: b. ramakrishnan, v. ramasamy, p. k. qasba
Keywords: catalytic intermediate
- 2fym.pdb.
lyase 08-feb-06 2fym
Mg
Title: crystal structure of e. coli enolase complexed with the minimal binding segment of rnase e.
Author: v. chandran, b. f. luisi
Keywords: enolase, rnase e
- 2fys.pdb.
transferase 08-feb-06 2fys
Title: crystal structure of erk2 complex with kim peptide derived from mkp3
Author: s. liu, j. sun, b. zhou, z. y. zhang
Keywords: mkp3, kim
- 2fz5.pdb.
electron transport 09-feb-06 2fz5
(NMR)
Title: solution structure of two-electron reduced megasphaera elsdenii flavodoxin
Author: c. p. m. van mierlo, p. lijnzaad, j. vervoort, f. mueller, h. j. berendsen, j. de vlieg
Keywords: non-covalently bound fmn
- 2g0k.pdb.
antibiotic 13-feb-06 2g0k
(NMR, 47 structures)
Title: solution structure of neocarzinostatin apo-protein
Author: f. w. muskett, r. g. stoneman, s. caddick, d. n. woolfson
Keywords: igg fold
- 2g0l.pdb.
antibiotic 13-feb-06 2g0l
(NMR, 58 structures)
Title: solution structure of neocarzinostatin apo-protein with bound flavone
Author: f. w. muskett, r. g. stoneman, s. caddick, d. n. woolfson
Keywords: igg fold
- 2g1w.pdb.
ribonucleic acid 15-feb-06 2g1w
(NMR, 15 structures)
Title: nmr structure of the aquifex aeolicus tmrna pseudoknot pk1
Author: s. nonin-lecomte, f. dardel
Keywords: pk1, pseudoknot, trans-translation, nmr
- 2g6f.pdb.
signaling protein 24-feb-06 2g6f
Co
Title: crystal structure of the sh3 domain of betapix in complex with a high affinity peptide from pak2
Author: a. hoelz
Keywords: peptide interaction
- 2g9d.pdb.
hydrolase 06-mar-06 2g9d
Se
Title: crystal structure of succinylglutamate desuccinylase from vibrio cholerae, northeast structural genomics target vcr20
Author: w. zhou, s. jayaraman, f. forouhar, k. conover, x. rong, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2gau.pdb.
transcription 09-mar-06 2gau
Title: crystal structure of transcriptional regulator, crp/fnr family from porphyromonas gingivalis (apc80792), structural genomics, mcsg
Author: f. j. rotella, r. g. zhang, r. mulligan, s. moy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, porphyromonas gingivalis, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2gbh.pdb.
ribonucleic acid 10-mar-06 2gbh
(NMR, 5 structures)
Title: nmr structure of stem region of helix-35 of 23s e.coli ribosomal rna (residues 736-760)
Author: a. bax, j. boisbouvier, d. bryce, a. grishaev, c. jaroniec, e. miclet, e. nikonovicz, e. o'neil-cabello, j. ying
Keywords: rdc, rcsa
- 2gbo.pdb.
structural genomics, unknown function 10-mar-06 2gbo
Se
Title: hypothetical protein ef_2458 from enterococcus faecalis.
Author: j. osipiuk, r. wu, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2gbs.pdb.
structural genomics, unknown function 11-mar-06 2gbs
(NMR, 20 structures)
Title: nmr structure of rpa0253 from rhodopseudomonas palustris. northeast structural genomics consortium target rpr3
Author: t. a. ramelot, j. r. cort, k. conover, y. chen, l. c. ma, m. ciano, r. xiao, t. b. acton, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: rpr3, nesg, structural genomics, rpa0253, cog2947, psi, protein structure initiative, northeast structural genomics consortium
- 2gc0.pdb.
isomerase 13-mar-06 2gc0
Zn
Title: the crystal structure of phosphoglucose isomerase from pyrococcus furiosus in complex with 5-phospho-d- arabinonohydroxamate and zinc
Author: j. m. berrisford, d. w. rice, p. j. baker
Keywords: phosphoglucose isomerase, 5-phospho-d- arabinonohydroxamate
- 2gc1.pdb.
isomerase 13-mar-06 2gc1
Zn
Title: the crystal structure of phosphoglucose isomerase from pyrococcus furiosus in complex with sorbitol 6-phosphate and zinc
Author: j. m. berrisford, d. w. rice, p. j. baker
Keywords: phosphoglucose isomerase, sorbitol 6-phosphate
- 2gc2.pdb.
isomerase 13-mar-06 2gc2
Zn
Title: the crystal structure of phosphoglucose isomerase from pyrococcus furiosus in complex with fructose 6-phosphate and zinc
Author: j. m. berrisford, d. w. rice, p. j. baker
Keywords: phosphoglucose isomerase, fructose 6-phosphate
- 2gc3.pdb.
isomerase 13-mar-06 2gc3
Zn
Title: the crystal structure of phosphoglucose isomerase from pyrococcus furiosus in complex with mannose 6-phosphate and zinc
Author: j. m. berrisford, d. w. rice, p. j. baker
Keywords: phosphoglucose isomerase, mannose 6-phosphate
- 2gdd.pdb.
hydrolase 15-mar-06 2gdd
Title: human beta ii tryptase with inhibitor cra-27592
Author: j. r. somoza
- 2ge4.pdb.
membrane protein 17-mar-06 2ge4
(NMR, 10 structures)
Title: high-resolution solution structure of outer membrane protein a transmembrane domain
Author: t. cierpicki, b. liang, l. k. tamm, j. h. bushweller
Keywords: beta barrel
- 2gfo.pdb.
hydrolase 22-mar-06 2gfo
Zn Se
Title: structure of the catalytic domain of human ubiquitin carboxyl-terminal hydrolase 8
Author: j. r. walker, g. v avvakumov, s. xue, e. m. newman, p. j. finerty jr. , c. butler-cole, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: protease, thiol protease, ubl conjugation pathway, deubiquitinating enzyme, dub, zinc ribbon, structural genomics consortium, sgc
- 2ggg.pdb.
isomerase 24-mar-06 2ggg
Title: the mutant a68c-d72c of deinococcus radiodurans n-acylamino acid racemase
Author: w. c. wang, w. c. chiu
Keywords: deinococcus radiodurans
- 2ggh.pdb.
isomerase 24-mar-06 2ggh
Mg
Title: the mutant a68c-d72c-nlq of deinococcus radiodurans nacylamino acid racemase
Author: w. c. wang, w. c. chiu
Keywords: deinococcus radiodurans
- 2ggi.pdb.
isomerase 24-mar-06 2ggi
Title: the mutant e149c-a182c of deinococcus radiodurans n- acylamino acid racemase
Author: w. c. wang, w. c. chiu
Keywords: deinococcus radiodurans
- 2ggj.pdb.
isomerase 24-mar-06 2ggj
Title: the mutant y218c of deinococcus radiodurans n-acylamino acid racemase
Author: w. c. wang, w. c. chiu
Keywords: deinococcus radiodurans
- 2ggk.pdb.
hydrolase 24-mar-06 2ggk
Title: the mutant a302c of agrobacterium radiobacter n-carbamoyl-d- amino-acid amidohydrolase
Author: w. c. wang, w. c. chiu, j. y. you
- 2ggl.pdb.
hydrolase 24-mar-06 2ggl
Title: the mutant a222c of agrobacterium radiobacter n-carbamoyl-d- amino acid amidohydrolase
Author: w. c. wang, w. c. chiu, j. y. you
- 2gh2.pdb.
oxidoreductase 24-mar-06 2gh2
Fe
Title: 1.5 a resolution r. norvegicus cysteine dioxygenase structure crystallized in the presence of cysteine
Author: c. r. simmons, p. a. karplus, m. h stipanuk
Keywords: cysteinyl-tyrosine, cupin, beta-sandwich, tetrahedral iron coordination
- 2ghf.pdb.
transcription, metal binding protein 27-mar-06 2ghf
Zn
(NMR, 20 structures)
Title: solution structure of the complete zinc-finger region of human zinc-fingers and homeoboxes 1 (zhx1)
Author: h. wienk, structural proteomics in europe (spine)
Keywords: structural genomics, structural proteomics in europe, spine
- 2ghl.pdb.
transferase 27-mar-06 2ghl
Cl
Title: mutant mus musculus p38 kinase domain in complex with inhibitor pg-874743
Author: r. l. walter, m. j. mekel, a. g. evdokimov, m. e. pokross, t. a. brugel
Keywords: p38
- 2ghr.pdb.
transferase 27-mar-06 2ghr
Se
Title: crystal structure of (pc04204a) from bacillus cereus atcc 10987 at 2.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2ghs.pdb.
structural genomics, unknown function 27-mar-06 2ghs
Cl K Se
Title: crystal structure of calcium-binding protein, regucalcin (15155668) from agrobacterium tumefaciens at 1.55 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: calcium-binding protein, regucalcin, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2gi3.pdb.
ligase 28-mar-06 2gi3
Se
Title: crystal structure of glutamyl-trna(gln) amidotransferase subunit a (tm1272) from thermotoga maritima at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: glutamyl-trna(gln) amidotransferase subunit a (glu- adt subunit a), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2gim.pdb.
electron transport 29-mar-06 2gim
Cu
Title: 1.6 angstrom structure of plastocyanin from anabaena variabilis
Author: l. schmidt, p. harris, h. e. m. christensen
Keywords: cu, helix
- 2giv.pdb.
transferase 29-mar-06 2giv
Cl Zn
Title: human myst histone acetyltransferase 1
Author: j. min, h. wu, p. loppnau, j. weigelt, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2gj0.pdb.
plant protein 30-mar-06 2gj0
(NMR, 20 structures)
Title: cycloviolacin o14
Author: d. c. ireland, m. l. colgrave, d. j. craik
- 2gjs.pdb.
signaling protein 31-mar-06 2gjs
Mg
Title: the crystal structure of human rrad in complex with gdp
Author: a. p. turnbull, x. yang, m. soundararajan, g. schoch, j. debreczeni, j. m. elkins, c. gileadi, g. berridge, n. pantic, n. burgess, c. e. a. smee, j. bray, f. von delft, j. weigelt, a. edwards, c. arrowsmith, m. sundstrom, d. doyle, structural genomics consortium (sgc)
Keywords: gdp/gtp binding, gtp hydrolysis, structural genomics, structural genomics consortium, sgc
- 2gjv.pdb.
structural genomics, unknown function 31-mar-06 2gjv
Cl Ca
Title: crystal structure of a hypothetical protein from salmonella typhimurium
Author: g. minasov, l. shuvalova, j. s. brunzelle, i. i. vorontsov, f. r. collart, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: structural genomics, unknown function, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2gkw.pdb.
apoptosis 03-apr-06 2gkw
Title: key contacts promote recongnito of baff-r by traf3
Author: k. r. ely
Keywords: nf-kb signaling, baff receptor, traf3
- 2gl6.pdb.
transferase 04-apr-06 2gl6
Mg U
Title: crystal structure of human sarcomeric mitochondrial creatine kinase
Author: w. m. rabeh, w. tempel, l. nedyalkova, r. landry, c. h. arrowsmith, a. m. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: creatine kinase, adp, structural genomics, structural genomics consortium, sgc
- 3grt.pdb.
oxidoreductase 12-feb-97 3grt
Title: human glutathione reductase a34e, r37w mutant, oxidized trypanothione complex
Author: v. s. stoll, s. j. simpson, r. l. krauth-siegel, c. t. walsh, e. f. pai
Keywords: flavoenzyme, mixed disulfide
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