Recent PDB releases or updates: week of 7 April 2006
- 1ch1.pdb.
oxygen storage/transport 31-mar-99 1ch1
Fe
Title: recombinant sperm whale myoglobin l89g mutatnt (met)
Author: e. c. liong, g. n. phillips jr.
Keywords: heme, muscle protein
- 1wss.pdb.
hydrolase/blood clotting 10-nov-04 1wss
Ca
Title: human factor viia-tissue factor in complex with peprid mimetic inhibitor that has two charge groups in p2 and p4
Author: s. kadono, a. sakamoto, y. kikuchi, m. oh-eda, n. yabuta, t. koga, k. hattori, t. shiraishi, m. haramura, h. kodama, y. ono, t. esaki, h. sato, y. watanabe, s. itoh, m. ohta, t. kozono
- 1x1o.pdb.
transferase 08-apr-05 1x1o
Title: crystal structure of project id tt0268 from thermus thermophilus hb8
Author: k. shimizu, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 1x26.pdb.
deoxyribonucleic acid 20-apr-05 1x26
(NMR, 30 structures)
Title: solution structure of the aa-mismatch dna complexed with naphthyridine-azaquinolone
Author: k. nakatani, s. hagihara, y. goto, a. kobori, m. hagihara, g. hayashi, m. kyo, m. nomura, m. mishima, c. kojima
Keywords: aa mismatch, drug
- 1x5v.pdb.
toxin 17-may-05 1x5v
(NMR, 25 structures)
Title: nmr structure of pcfk1
Author: c. pimentel, s. j. choi, b. chagot, c. guette, j. m. camadro, h. darbon
- 1yg6.pdb.
hydrolase 04-jan-05 1yg6
Title: clpp
Author: m. c. bewley, v. graziano, k. griffin, j. m. flanagan
Keywords: caseinolytic protease, protease ti, heat shock protein f21.5
- 1yg8.pdb.
hydrolase 04-jan-05 1yg8
Title: the structure of a v6a variant of clpp.
Author: m. c. bewley, v. graziano, k. griffin, j. m. flanagan
Keywords: caseinolytic protease, protease ti, heat shock protein f21.5
- 1ys5.pdb.
signaling protein 07-feb-05 1ys5
(NMR, 30 structures)
Title: solution structure of the antigenic domain of gna1870 of neisseria meningitidis
Author: f. cantini, s. savino, v. masignani, m. pizza, m. scarselli, e. swennen, g. romagnoli, d. veggi, l. banci, r. rappuoli
Keywords: neisseria meningitidis, beta-barrel structure
- 1z1n.pdb.
electron transport 04-mar-05 1z1n
Zn Fe
Title: crystal structure of the sixteen heme cytochrome from desulfovibrio gigas
Author: t. santos-silva, j. m. dias, m. j. romao
- 1z88.pdb.
hydrolase 30-mar-05 1z88
Mg
Title: crystal structure of lys154arg mutant of mature apha of s. typhimurium
Author: r. d. makde, g. d. gupta, v. kumar
Keywords: lys154arg mutant of mature apha, metalloenzyme
- 1zan.pdb.
immune system 06-apr-05 1zan
Cl
Title: crystal structure of anti-ngf ad11 fab
Author: s. covaceuszach, a. cattaneo, a. cassetta, d. lamba
Keywords: fab
- 1zea.pdb.
immune system 18-apr-05 1zea
Title: structure of the anti-cholera toxin antibody fab fragment te33 in complex with a d-peptide
Author: p. scheerer, n. krauss, h. wessner, c. scholz, l. otte, m. seifert, a. kramer, j. schneider-mergener, w. hoehne
Keywords: cross-reactivity, anti-cholera toxin, antigen-antibody complex, antigen recognition, substitution matrix
- 1zgu.pdb.
ligase/signaling protein 22-apr-05 1zgu
(NMR, 10 structures)
Title: solution structure of the human mms2-ubiquitin complex
Author: m. j. lewis, l. f. saltibus, d. d. hau, w. xiao, l. spyracopoulos
Keywords: ubiquitin binding motif
- 1zh0.pdb.
ligase 22-apr-05 1zh0
Title: crystal structure of l-3-(2-napthyl)alanine-trna synthetasein complex with l-3-(2-napthyl)alanine
Author: j. m. turner, j. graziano, g. spraggon, p. g. schultz
Keywords: unnatural amino acid, trna synthetase, npala
- 1zh6.pdb.
ligase 22-apr-05 1zh6
Title: crystal structure of p-acetylphenylalanine-trna synthetase in complex with p-acetylphenylalanine
Author: j. m. turner, j. graziano, g. spraggon, p. g. schultz
Keywords: unnatural amino acid, trna synthetase, ketone
- 1zv5.pdb.
hydrolase/immune system 01-jun-05 1zv5
Title: crystal structure of the variable domain of the camelid heavy-chain antibody d2-l29 in complex with hen egg white lysozyme
Author: e. de genst, k. silence, k. decanniere, k. conrath, r. loris, j. kinne, s. muyldermans, l. wyns
Keywords: immunoglobulin fold, protein-protein heterocomplex, alpha-beta orthogonal bundle
- 1zvh.pdb.
hydrolase/immune system 02-jun-05 1zvh
Title: crystal stucture of the vhh domain d2-l24 in complex with hen egg white lysozyme
Author: e. de genst, k. silence, k. decanniere, k. conrath, r. loris, j. kinne, s. muyldermans, l. wyns
Keywords: immunoglobulin fold, protein-protein heterocomplex, alpha-beta orthogonal bundle
- 1zvy.pdb.
hydrolase/immune system 03-jun-05 1zvy
Title: crystal structure of the vhh d3-l11 in complex with hen egg white lysozyme
Author: e. de genst, k. silence, k. decanniere, k. conrath, r. loris, j. kinne, s. muyldermans, l. wyns
Keywords: immunoglobulin fold, protein protein heterocomplex, alpha-beta orthogonal bundle
- 1zyz.pdb.
oxidoreductase 13-jun-05 1zyz
Title: structures of yeast ribonucloetide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 1zzd.pdb.
oxidoreductase 13-jun-05 1zzd
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2a7s.pdb.
ligase 06-jul-05 2a7s
Title: crystal structure of the acyl-coa carboxylase, accd5, from mycobacterium tuberculosis
Author: t. lin, m. melgar, j. purdon, t. tseng, s. c. tsai
Keywords: carboxyltransferase, acetyl-coa carboxylase, propionyl-coa carboxylase, acyl-coa carboxylase, mycolic acid, fatty acid, polyketide
- 2aao.pdb.
transferase 13-jul-05 2aao
Ca Se
Title: regulatory apparatus of calcium dependent protein kinase from arabidopsis thaliana
Author: v. chandran, e. j. stollar, k. lindorff-larsen, j. f. harper, w. j. chazin, c. m. dobson, b. f. luisi, j. christodoulou
Keywords: calmodulin-like domain, ef hand, calcium binding protein
- 2aaq.pdb.
oxidoreductase 14-jul-05 2aaq
Au Cl K
Title: crystal structure analysis of the human glutahione reductase, complexed with gopi
Author: s. urig, k. fritz-wolf, r. reau, c. herold-mende, k. toth, e. davioud- charvet, k. becker
Keywords: homodimer, antioxidative system, glutathione reduction, gold-coordination, protein gold complex
- 2acz.pdb.
oxidoreductase/electron transport 19-jul-05 2acz
Cl Fe
Title: complex ii (succinate dehydrogenase) from e. coli with atpenin a5 inhibitor co-crystallized at the ubiquinone binding site
Author: r. horsefield, v. yankovskaya, g. sexton, w. whittingham, k. shiomi, s. omura, b. byrne, g. cecchini, s. iwata
Keywords: aerobic reparatory complex ii, sqr, succinate:ubiquinone oxidoreductase, aa5, at5, atpenin a5, sdh, succinate dehydrogenase
- 2afr.pdb.
isomerase 26-jul-05 2afr
Title: the crystal structure of putative precorrin isomerase cbic in cobalamin biosynthesis
Author: y. xue, z. wei, x. li
- 2afv.pdb.
isomerase 26-jul-05 2afv
Cl
Title: the crystal structure of putative precorrin isomerase cbic in cobalamin biosynthesis
Author: y. xue, z. wei
- 2ag6.pdb.
ligase 26-jul-05 2ag6
Br
Title: crystal structure of p-bromo-l-phenylalanine-trna sythetase in complex with p-bromo-l-phenylalanine
Author: j. m. turner, j. graziano, g. spraggon, p. g. schultz
Keywords: unnatural amino acid, trna synthetase, bromo-phenylalanine
- 2agm.pdb.
isomerase 27-jul-05 2agm
(NMR, 20 structures)
Title: solution structure of the r-module from alge4
Author: f. l. aachmann, b. i. svanem, p. guntert, s. b. petersen, s. valla, r. wimmer
- 2ahy.pdb.
transport protein 28-jul-05 2ahy
Na Ca
Title: na+ complex of the nak channel
Author: n. shi, s. ye, a. alam, l. chen, y. jiang
Keywords: helix bundle, tetramer, central cavity, ion binding
- 2ahz.pdb.
transport protein 28-jul-05 2ahz
K Ca
Title: k+ complex of the nak channel
Author: n. shi, s. ye, a. alam, l. chen, y. jiang
Keywords: helix bundle, tetramer, central cavity, ion binding
- 2anl.pdb.
hydrolase 11-aug-05 2anl
Title: x-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor
Author: j. c. clemente, l. govindasamy, a. madabushi, r. e. moose, c. a. yowell, k. hidaka, t. kimura, y. hayashi, y. kiso, m. agbandje-mckenna, r. mckenna
Keywords: plasmepsin 4, x-ray structure, aspartic protease
- 2awe.pdb.
ribonucleic acid 31-aug-05 2awe
Sr K Br
Title: base-tetrad swapping results in dimerization of rna quadruplexes: implications for formation of i-motif rna octaplex
Author: b. pan, k. shi, m. sundaralingam
Keywords: tetraplex, octaplex
- 2b5v.pdb.
oxidoreductase 29-sep-05 2b5v
Title: crystal structure of glucose dehydrogenase from haloferax mediterranei
Author: k. l. britton, p. j. baker, m. fisher, s. ruzheinikov, d. j. gilmour, m. j. bonete, j. ferrer, c. pire, j. esclapez, d. w. rice
- 2b5w.pdb.
oxidoreductase 29-sep-05 2b5w
K Zn
Title: crystal structure of d38c glucose dehydrogenase mutant from haloferax mediterranei
Author: k. l. britton, p. j. baker, m. fisher, s. ruzheinikov, d. j. gilmour, m. j. bonete, j. ferrer, c. pire, j. esclapez, d. w. rice
- 2b9d.pdb.
transcription, viral protein 11-oct-05 2b9d
Zn
Title: crystal structure of hpv e7 cr3 domain
Author: x. liu, a. clements, k. zhao, r. marmorstein
Keywords: homodimer
- 2b9s.pdb.
isomerase/dna 12-oct-05 2b9s
V
Title: crystal structure of heterodimeric l. donovani topoisomerase i-vanadate-dna complex
Author: d. r. davies, w. g. j. hol
Keywords: vanadate complex
- 2bax.pdb.
hydrolase 15-oct-05 2bax
Cl Ca
Title: atomic resolution structure of the double mutant (k53,56m) of bovine pancreatic phospholipase a2
Author: k. sekar, m. yogavel, d. velmurugan, z. dauter, m. dauter, m. d. tsai
Keywords: alpha helix, beta sheet
- 2bb5.pdb.
transport protein 17-oct-05 2bb5
Co
Title: structure of human transcobalamin in complex with cobalamin
Author: j. wuerges, g. garau, s. geremia, s. n. fedosov, t. e. petersen, l. randaccio
- 2bb6.pdb.
transport protein 17-oct-05 2bb6
Cl Co
Title: structure of cobalamin-complexed bovine transcobalamin in monoclinic crystal form
Author: j. wuerges, g. garau, s. geremia, s. n. fedosov, t. e. petersen, l. randaccio
- 2bbc.pdb.
transport protein 17-oct-05 2bbc
Cl Co
Title: structure of cobalamin-complexed bovine transcobalamin in trigonal crystal form
Author: j. wuerges, g. garau, s. geremia, s. n. fedosov, t. e. petersen, l. randaccio
- 2bwm.pdb.
lectin 25-may-05 2bwm
Se Ca
Title: 1.8a crystal structure of of psathyrella velutina lectin in complex with methyl 2-acetamido-1,2-dideoxy-1-seleno-beta- d-glucopyranoside
Author: g. cioci, e. p. mitchell, v. chazalet, c. gautier, s. oscarson, h. debray, s. perez, a. imberty
Keywords: lectin, n-acetyl-glucosamine
- 2bwr.pdb.
lectin 27-may-05 2bwr
Cl Ca
Title: crystal structure of psathyrella velutina lectin at 1.5a resolution
Author: g. cioci, e. p. mitchell, v. chazalet, c. gautier, s. oscarson, h. debray, s. perez, a. imberty
Keywords: lectin, n-acetyl-glucosamine
- 2bzo.pdb.
hydrolase 19-aug-05 2bzo
Title: senp1-sumo2 complex
Author: l. shen, c. dong, h. liu, r. t. hay, j. h. naismith
Keywords: protease co-complex, hydrolase, nuclear protein, protease, thiol protease, ubl conjugation pathway
- 2bzp.pdb.
hydrolase 19-aug-05 2bzp
Title: senp1 structure
Author: c. dong, l. shen, h. liu, r. t. hay, j. h. naismith
Keywords: hydrolase, nuclear protein, thiol protease, ubl conjugation pathway
- 2c0h.pdb.
hydrolase 23-aug-05 2c0h
Title: x-ray structure of beta-mannanase from blue mussel mytilus edulis
Author: a. m. larsson, l. anderson, b. xu, i. g. munoz, i. uson, j. -c. janson, h. stalbrand, j. stahlberg
Keywords: hydrolase, signal, tim alpha/beta barrel
- 2c24.pdb.
hydrolase 07-jul-05 2c24
Title: family 30 carbohydrate-binding module of cellulosomal cellulase cel9d-cel44b of clostridium thermocellum
Author: a. l. carvalho, v. alves, s. najmudin, m. j. romao, j. a. m. prates, l. m. a. ferreira, d. n. bolam, h. j. gilbert, c. m. g. a. fontes
Keywords: clostridium thermocellum, cellulosome, hydrolase
- 2c25.pdb.
lectin 10-aug-05 2c25
Ca
Title: 1.8a crystal structure of psathyrella velutina lectin in complex with n-acetylneuraminic acid
Author: g. cioci, e. p. mitchell, v. chazalet, c. gautier, s. oscarson, h. debray, s. perez, a. imberty
Keywords: lectin, n-acetyl-glucosamine
- 2c26.pdb.
hydrolase 26-sep-05 2c26
Ca
Title: structural basis for the promiscuous specificity of the carbohydrate-binding modules from the beta-sandwich super family
Author: s. najmudin, c. i. p. d. guerreiro, a. l. carvalho, d. n. bolam, j. a. m. prates, m. a. s. correia, v. d. alves, l. m. a. ferreira, m. j. romao, h. j. gilbert, c. m. g. a. fontes
Keywords: pkd domain, cbm44, carbohydrate binding module, beta-sandwich proteins, cellulosome, hydrolase
- 2c4d.pdb.
lectin 18-oct-05 2c4d
Ca
Title: 2.6a crystal structure of psathyrella velutina lectin in complex with n-acetylglucosamine
Author: g. cioci, e. p. mitchell, v. chazalet, c. gautier, s. oscarson, h. debray, s. perez, a. imberty
Keywords: lectin, n-acetylglucosamine
- 2c4x.pdb.
hydrolase 25-oct-05 2c4x
Ca Se
Title: structural basis for the promiscuous specificity of the carbohydrate-binding modules from the beta-sandwich super family
Author: s. najmudin, c. i. p. d. guerreiro, a. l. carvalho, d. n. bolam, j. a. m. prates, m. a. s. correia, v. d. alves, l. m. a. ferreira, m. j. romao, h. j. gilbert, c. m. g. a. fontes
Keywords: pkd domain, cbm44, carbohydrate binding module, beta-sandwich proteins, cellulosome, semet derivative, hydrolase
- 2c6c.pdb.
hydrolase 09-nov-05 2c6c
Cl I Zn Ca
Title: membrane-bound glutamate carboxypeptidase ii (gcpii) in complex with gpi-18431 (s)-2-(4- iodobenzylphosphonomethyl)-pentanedioic acid
Author: j. r. mesters, c. barinka, w. li, t. tsukamoto, p. majer, b. s. slusher, j. konvalinka, r. hilgenfeld
Keywords: multifunctional enzyme, polymorphism, signal-anchor, transmembrane, zinc
- 2c7m.pdb.
ubiquitin complex 25-nov-05 2c7m
Zn
Title: human rabex-5 residues 1-74 in complex with ubiquitin
Author: l. penengo, m. mapelli, a. g. murachelli, s. confalioneri, l. magri, a. musacchio, p. p. di fiore, s. polo, t. r. schneider
Keywords: endocytosis, nuclear protein, polyprotein, ubl conjugation
- 2c7n.pdb.
ubiquitin complex 25-nov-05 2c7n
Zn
Title: human rabex-5 residues 1-74 in complex with ubiquitin
Author: l. penengo, m. mapelli, a. g. murachelli, s. confalioneri, l. magri, a. musacchio, p. p. di fiore, s. polo, t. r. schneider
Keywords: endocytosis, nuclear protein, polyprotein, ubl conjugation, ubiquitin complex
- 2ccm.pdb.
signaling protein 16-jan-06 2ccm
Ca
Title: x-ray structure of calexcitin from loligo pealeii at 1.8a
Author: p. t. erskine, g. d. e. beaven, s. p. wood, g. fox, j. vernon, k. p. giese, j. b. cooper
Keywords: calcium, signaling protein
- 2cfb.pdb.
isomerase 17-feb-06 2cfb
Title: glutamate-1-semialdehyde 2,1-aminomutase from thermosynechococcus elongatus
Author: j. o. schulze, w. -d. schubert, j. moser, d. jahn, d. w. heinz
Keywords: pyridoxal phosphate dependent, aminotransferase, isomerase, porphyrin biosynthesis, chlorophyll biosynthesis
- 2cfx.pdb.
transcription 24-feb-06 2cfx
Title: structure of b.subtilis lrpc
Author: p. thaw, j. b. rafferty
Keywords: transcriptional regulation, dna binding, ffrp, transcription
- 2cgt.pdb.
chaperone 09-mar-06 2cgt
(cryo-electron microscopy)
Title: groel-adp-gp31 complex
Author: d. k. clare, p. j. bakkes, h. van heerikhuizen, s. m. van der vies, h. r. saibil
Keywords: gp31, chaperonin, chaperone, cell cycle, cell division, capsid assembly, early protein
- 2ch1.pdb.
transferase 10-mar-06 2ch1
Title: structure of anopheles gambiae 3-hydroxykynurenine transaminase
Author: f. rossi, s. garavaglia, g. b. giovenzana, b. arca, j. li, m. rizzi
Keywords: kynurenine pathway, anopheles gambiae, 3- hydroxykynurenine transaminase, transferase
- 2ch2.pdb.
transferase 10-mar-06 2ch2
Title: structure of the anopheles gambiae 3-hydroxykynurenine transaminase in complex with inhibitor
Author: f. rossi, s. garavaglia, g. b. giovenzana, b. arca, j. li, m. rizzi
Keywords: kynurenine pathway, anopheles gambiae, 3- hydroxykynurenine transaminase, transferase
- 2cii.pdb.
complex (antigen/peptide) 21-mar-06 2cii
Title: the crystal structure of h-2db complexed with a partial peptide epitope suggests an mhc class i assembly- intermediate
Author: a. glithero, j. tormo, k. doering, m. kojima, e. y. jones, t. elliott
Keywords: peptide binding, sendai virus, immune response, immunoglobulin domain, mhc i, pyrrolidone carboxylic acid, glycoprotein, membrane, transmembrane, complex (antigen/peptide)
- 2cj4.pdb.
inhibitor 29-mar-06 2cj4
Title: crystal structure of a cell wall invertase inhibitor from tobacco at ph 4.6
Author: m. hothorn, k. scheffzek
Keywords: four-helix bundle, helical hairpin, inhibitor
- 2cj5.pdb.
inhibitor 29-mar-06 2cj5
Title: crystal structure of a cell wall invertase inhibitor from tobacco (ph 5.0)
Author: m. hothorn, k. scheffzek
Keywords: four-helix bundle, helical hairpin, inhibitor
- 2cj6.pdb.
inhibitor 29-mar-06 2cj6
I
Title: crystal structure of a cell wall invertase inhibitor from tobacco (ph 7.5)
Author: m. hothorn, k. scheffzek
Keywords: four-helix bundle, helical hairpin, inhibitor
- 2cvs.pdb.
oxidoreductase 14-jun-05 2cvs
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvt.pdb.
oxidoreductase 14-jun-05 2cvt
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvu.pdb.
oxidoreductase 14-jun-05 2cvu
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvv.pdb.
oxidoreductase 14-jun-05 2cvv
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvw.pdb.
oxidoreductase 14-jun-05 2cvw
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvx.pdb.
oxidoreductase 14-jun-05 2cvx
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cvy.pdb.
oxidoreductase 14-jun-05 2cvy
Mg
Title: structures of yeast ribonucleotide reductase i
Author: h. xu, c. faber, t. uchiki, j. w. fairman, j. racca, c. dealwis
Keywords: ribonucleotide reductase, dntp regulation
- 2cw6.pdb.
lyase 17-jun-05 2cw6
Mg
Title: crystal structure of human hmg-coa lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria
Author: z. fu, j. a. runquist, j. f. hunt, h. m. miziorko, j. -j. p. kim
Keywords: ketogenic enzyme
- 2d01.pdb.
signaling protein 21-jul-05 2d01
Title: wild type photoactive yellow protein, p65 form
Author: n. shimizu, h. kamikubo, y. yamazaki, y. imamoto, m. kataoka
Keywords: lov, gaf-domains, photoreceptor
- 2d02.pdb.
signaling protein 21-jul-05 2d02
Title: r52q mutant of photoactive yellow protein, p65 form
Author: n. shimizu, h. kamikubo, y. yamazaki, y. imamoto, m. kataoka
Keywords: lov, gaf-domains, photoreceptor
- 2d3g.pdb.
protein transport 28-sep-05 2d3g
Title: double sided ubiquitin binding of hrs-uim
Author: s. hirano, m. kawasaki, r. kato, s. wakatsuki
Keywords: uim and ubiquitin
- 2d3k.pdb.
hydrolase 29-sep-05 2d3k
Zn
Title: structural study on project id ph1539 from pyrococcus horikoshii ot3
Author: k. shimizu, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2d82.pdb.
transferase 01-dec-05 2d82
(NMR)
Title: target structure-based discovery of small molecules that block human p53 and creb binding protein (cbp) association
Author: sachchidanand, l. resnick-silverman, s. yan, s. mujtaba, w. j. liu, l. zeng, j. j. manfredi, m. m. zhou
Keywords: creb, cbp, nmr structure, p53, chemical ligand, 9-acetyl-2,3,4,9-tetrahydro-carbazol-1-one
- 2dci.pdb.
virus/viral protein 07-jan-06 2dci
(NMR, 33 structures)
Title: nmr structure of influenza ha fusion peptide mutant w14a in dpc in ph5
Author: l. k. tamm, a. l. lai
Keywords: fusion peptide
- 2dcn.pdb.
transferase 10-jan-06 2dcn
Mg K
Title: crystal structure of 2-keto-3-deoxygluconate kinase from sulfolobus tokodaii complexed with 2-keto-6- phosphogluconate (alpha-furanose form)
Author: s. okazaki, h. onda, a. suzuki, s. kuramitsu, r. masui, t. yamane
Keywords: sulfolobus tokodaii, 2-keto- d-gluconate
- 2dd8.pdb.
immune system/viral protein 24-jan-06 2dd8
Title: crystal structure of sars-cov spike receptor-binding domain complexed with neutralizing antibody
Author: p. prabakaran, j. h. gan, y. feng, z. y. zhu, x. d. xiao, x. ji, d. s. dimitrov
Keywords: s protein, antibody, crystal structure, epitopes, vaccines, inhibitors
- 2dh4.pdb.
transferase 22-mar-06 2dh4
Mg
Title: geranylgeranyl pyrophosphate synthase
Author: t. -h. chang, r. -t. guo, t. -p. ko, a. h. -j. wang, p. -h. liang
Keywords: prenyl transferase, pyrophosphate
- 2er8.pdb.
transcription activator/dna 24-oct-05 2er8
Zn
Title: crystal structure of leu3 dna-binding domain complexed with a 12mer dna duplex
Author: m. x. fitzgerald, r. marmorstein
- 2ere.pdb.
transcription activator/dna 24-oct-05 2ere
Zn
Title: crystal structure of a leu3 dna-binding domain complexed with a 15mer dna duplex
Author: m. x. fitzgerald, r. marmorstein
- 2erg.pdb.
transcription activator/dna 24-oct-05 2erg
Zn
Title: crystal structure of leu3 dna-binding domain with a single h50c mutation complexed with a 15mer dna duplex
Author: m. x. fitzgerald, r. marmorstein
- 2eud.pdb.
oxidoreductase 28-oct-05 2eud
Mg F
Title: structures of yeast ribonucleotide reductase i complexed with ligands and subunit peptides
Author: c. dealwis, h. xu, c. faber, t. uchiki, j. fairman, j. racca
Keywords: ligand interaction, subunit assembly
- 2ewb.pdb.
hydrolase 02-nov-05 2ewb
Zn Na
Title: the crystal structure of bovine lens leucine aminopeptidase in complex with zofenoprilat
Author: v. alterio, c. pedone, g. de simone
Keywords: metallopeptidase
- 2exh.pdb.
hydrolase 08-nov-05 2exh
Ca
Title: structure of the family43 beta-xylosidase from geobacillus stearothermophilus
Author: c. brux, k. niefind, d. shallom-shezifi, s. yuval, d. schomburg
Keywords: hydrolsase, xylosidase, family43
- 2exi.pdb.
hydrolase 08-nov-05 2exi
Ca
Title: structure of the family43 beta-xylosidase d15g mutant from geobacillus stearothermophilus
Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
Keywords: hydrolsase, xylosidase, family43
- 2exj.pdb.
hydrolase 08-nov-05 2exj
Ca
Title: structure of the family43 beta-xylosidase d128g mutant from geobacillus stearothermophilus in complex with xylobiose
Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
Keywords: hydrolsase, xylosidase, family43, xylose
- 2exk.pdb.
hydrolase 08-nov-05 2exk
Ca
Title: structure of the family43 beta-xylosidase e187g from geobacillus stearothermophilus in complex with xylobiose
Author: c. brux, k. niefind, d. shallom-shezifi, y. shoham, d. schomburg
Keywords: hydrolsase, xylosidase, family43, xylose
- 2eyr.pdb.
immune system 09-nov-05 2eyr
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt12
- 2eys.pdb.
immune system 09-nov-05 2eys
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt15
- 2eyt.pdb.
immune system 09-nov-05 2eyt
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt15
- 2f1g.pdb.
hydrolase 14-nov-05 2f1g
Title: cathepsin s in complex with non-covalent 2-(benzoxazol-2- ylamino)-acetamide
Author: g. spraggon, m. hornsby, s. a. lesley, d. c. tully, j. l. harris, d. s. karenewsky, r. kulathila, k. clark
Keywords: noncovalent, inhibition, 2-(benzooxazol-2- ylamino) acetamides
- 2f1t.pdb.
membrane protein 15-nov-05 2f1t
Title: outer membrane protein ompw
Author: b. van den berg
Keywords: beta barrel
- 2f1v.pdb.
membrane protein 15-nov-05 2f1v
Title: outer membrane protein ompw
Author: b. van den berg
- 2f2l.pdb.
membrane protein, immune system, toxin 17-nov-05 2f2l
Title: crystal structure of tracheal cytotoxin (tct) bound to the ectodomain complex of peptidoglycan recognition proteins lca (pgrp-lca) and lcx (pgrp-lcx)
Author: c. i. chang, j. deisenhofer
- 2f34.pdb.
membrane protein 18-nov-05 2f34
Cl
Title: crystal structure of the glur5 ligand binding core dimer with ubp310 at 1.74 angstroms resolution
Author: m. l. mayer
- 2f35.pdb.
membrane protein 18-nov-05 2f35
Cl
Title: crystal structure of the glur5 ligand binding core with ubp302 at 1.87 angstroms resolution
Author: m. l. mayer
- 2f36.pdb.
membrane protein 18-nov-05 2f36
Title: crystal structure of the glur5 ligand binding core dimer with glutamate at 2.1 angstroms resolution
Author: m. l. mayer
- 2f4q.pdb.
isomerase 23-nov-05 2f4q
Se
Title: crystal structure of deinococcus radiodurans topoisomerase ib
Author: a. patel, s. shuman, a. mondragon
- 2f8o.pdb.
immune system 02-dec-05 2f8o
Title: a native to amyloidogenic transition regulated by a backbone trigger
Author: c. m. eakin, a. j. berman, a. d. miranker
Keywords: amyloid, class-1 mhc
- 2f8x.pdb.
transcription/dna 04-dec-05 2f8x
Title: crystal structure of activated notch, csl and maml on hes-1 promoter dna sequence
Author: y. nam, p. sliz, s. c. blacklow
Keywords: csl, mastermind, hes-1, ankyrin repeats, rel- homology region
- 2f8y.pdb.
transcription 04-dec-05 2f8y
Title: crystal structure of human notch1 ankyrin repeats to 1.55a resolution.
Author: y. nam, p. sliz, s. c. blacklow
Keywords: ankyrin repeats
- 2f9l.pdb.
hydrolase 06-dec-05 2f9l
Mg
Title: 3d structure of inactive human rab11b gtpase
Author: s. m. n. scapin, b. g. guimaraes, n. i. t. zanchin
Keywords: vesicle transport
- 2f9m.pdb.
hydrolase 06-dec-05 2f9m
Mg Ni
Title: 3d structure of active human rab11b gtpase
Author: s. m. n scapin, b. g. guimaraes, n. i. t. zanchin
Keywords: vesicle transport
- 2fbw.pdb.
oxidoreductase 10-dec-05 2fbw
K Fe
Title: avian respiratory complex ii with carboxin bound
Author: l. s. huang, g. sun, d. cobessi, a. c. wang, j. t. shen, e. y. tung, v. e. anderson, e. a. berry
Keywords: membrane protein, heme protein, iron sulfur protein, cytochrome b, oxidoreductase, redox enzyme, respiratory chain, oxaloacetate nitropropionate ubiquinone
- 2fc1.pdb.
oxidoreductase 10-dec-05 2fc1
Fe
Title: heme no complex in nos
Author: k. pant, b. r. crane
Keywords: nitric oxide synthase
- 2fcm.pdb.
structural protein 12-dec-05 2fcm
Cd
Title: x-ray crystal structure of a chemically synthesized [d- gln35]ubiquitin with a cubic space group
Author: d. bang, a. v. gribenko, v. tereshko, a. a. kossiakoff, s. b. kent, g. i. makhatadze
- 2fcn.pdb.
structural protein 12-dec-05 2fcn
Cd
Title: x-ray crystal structure of a chemically synthesized [d- val35]ubiquitin with a cubic space group
Author: d. bang, a. v. gribenko, v. tereshko, a. a. kossiakoff, s. b. kent, g. i. makhatadze
- 2fcq.pdb.
structural protein 12-dec-05 2fcq
Cd
Title: x-ray crystal structure of a chemically synthesized ubiquitin with a cubic space group
Author: d. bang, a. v. gribenko, v. tereshko, a. a. kossiakoff, s. b. kent, g. i. makhatadze
- 2fcs.pdb.
structural protein 12-dec-05 2fcs
Cd
Title: x-ray crystal structure of a chemically synthesized [l- gln35]ubiquitin with a cubic space group
Author: d. bang, a. v. gribenko, v. tereshko, a. a. kossiakoff, s. b. kent, g. i. makhatadze
- 2fde.pdb.
hydrolase 13-dec-05 2fde
K
Title: wild type hiv protease bound with gw0385
Author: r. x. xu
Keywords: inhibitor, gw0385
- 2fgy.pdb.
lyase 22-dec-05 2fgy
Zn
Title: beta carbonic anhydrase from the carboxysomal shell of halothiobacillus neapolitanus (csosca)
Author: m. r. sawaya
- 2fhw.pdb.
signaling protein 27-dec-05 2fhw
(NMR, 20 structures)
Title: solution structure of human relaxin-3
Author: k. j. rosengren, d. j. craik
- 2fhx.pdb.
hydrolase, metal binding protein 27-dec-05 2fhx
Cl Zn
Title: pseudomonas aeruginosa spm-1 metallo-beta-lactamase
Author: t. a. murphy, l. e. catto, s. e. halford, a. t. hadfield, w. minor, t. r. walsh, j. spencer
Keywords: dinuclear zinc, antibiotic resistance, structure, hydrolase
- 2fiq.pdb.
transferase 30-dec-05 2fiq
Se
Title: crystal structure of putative tagatose 6-phosphate kinase
Author: u. a. ramagopal, e. fedorov, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2fk7.pdb.
transferase 04-jan-06 2fk7
Title: crystal structure of hma (mmaa4) from mycobacterium tuberculosis, apo-form
Author: f. boissier, v. guillet, l. mourey
- 2fk8.pdb.
transferase 04-jan-06 2fk8
Title: crystal structure of hma (mmaa4) from mycobacterium tuberculosis complexed with s-adenosylmethionine
Author: f. boissier, v. guillet, l. mourey
- 2fkf.pdb.
isomerase 04-jan-06 2fkf
Zn
Title: phosphomannomutase/phosphoglucomutase from pseudomonas aeruginosa with alpha-d-glucose 1,6-bisphosphate bound
Author: c. a. regni, l. j. beamer
Keywords: phosphoserine, enzyme-metal complex, enzyme-ligand complex
- 2fkk.pdb.
virus/viral protein 04-jan-06 2fkk
Br
Title: crystal structure of the c-terminal domain of the bacteriophage t4 gene product 10
Author: p. g. leiman, m. m. shneider, v. v. mesyanzhinov, m. g. rossmann
- 2fkm.pdb.
isomerase 04-jan-06 2fkm
Zn
Title: pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound
Author: c. a. regni, l. j. beamer
Keywords: enzyme-metal complex, enzyme-ligand complex
- 2fkw.pdb.
membrane protein, photosynthesis 05-jan-06 2fkw
Mg
Title: structure of lh2 from rps. acidophila crystallized in lipidic mesophases
Author: m. z. papiz, v. cherezov, j. clogston, m. caffrey
Keywords: lipidic mesophase, crystallization, cubic phase, sponge phase, ldao, rhodopin glucoside carotenoid
- 2fkz.pdb.
metal binding protein 05-jan-06 2fkz
Mg Fe
Title: reduced (all ferrous) form of the azotobacter vinelandii bacterioferritin
Author: l. swartz, m. kunchinkas, h. li, t. l. poulos, w. n. lanzilotta
Keywords: bacterioferritin, ferroxidase, diiron site, iron transport
- 2fl0.pdb.
metal binding protein 05-jan-06 2fl0
Mg Fe
Title: oxidized (all ferric) form of the azotobacter vinelandii bacterioferritin
Author: l. swartz, k. kunchinkas, h. li, t. l. poulos, w. n. lanzilotta
Keywords: ferritin, diiron site, iron transport
- 2fl8.pdb.
virus/viral protein 05-jan-06 2fl8
(cryo-electron microscopy)
Title: fitting of the gp10 trimer structure into the cryoem map of the bacteriophage t4 baseplate in the hexagonal conformation.
Author: p. g. leiman, m. m. shneider, v. v. mesyanzhinov, m. g. rossmann
- 2fl9.pdb.
virus/viral protein 05-jan-06 2fl9
(cryo-electron microscopy)
Title: evolution of bacteriophage tails: structure of t4 gene product 10
Author: p. g. leiman, m. m. shneider, v. v. mesyanzhinov, m. g. rossmann
- 2flb.pdb.
hydrolase/blood clotting 05-jan-06 2flb
Title: discovery of a novel hydroxy pyrazole based factor ixa inhibitor
Author: b. a. katz
Keywords: short hydrogen bond-mediated, pyrazole-based inhibitor
- 2fnj.pdb.
protein transport/signaling protein 11-jan-06 2fnj
Title: crystal structure of a b30.2/spry domain-containing protein gustavus in complex with elongin b and elongin c
Author: j. s. woo, b. h. oh
Keywords: lectin-like, b30.2, spry
- 2fo0.pdb.
transferase 12-jan-06 2fo0
Cl
Title: organization of the sh3-sh2 unit in active and inactive forms of the c-abl tyrosine kinase
Author: b. nagar, o. hantschel, m. seeliger, j. m. davies, w. i. weis, g. superti-furga, j. kuriyan
Keywords: autoinhibition, myristoylation, sh3-sh2 clamp, phosphoserine
- 2fo1.pdb.
gene regulation/signalling protein/dna 12-jan-06 2fo1
Se
Title: crystal structure of the csl-notch-mastermind ternary complex bound to dna
Author: j. j. wilson, r. a. kovall
Keywords: protein-dna complex, double helix, ankyrin repeat
- 2fo8.pdb.
hydrolase inhibitor 13-jan-06 2fo8
(NMR, 15 structures)
Title: solution structure of the trypanosoma cruzi cysteine protease inhibitor chagasin
Author: d. salmon, r. do aido-machado, a. a. p. de lima, j. scharfstein, h. oschkinat, j. r. pires
- 2foq.pdb.
lyase 13-jan-06 2foq
Hg Zn
Title: human carbonic anhydrase ii complexed with two-prong inhibitors
Author: k. m. jude, d. w. christianson
Keywords: zinc, inhibitor, copper
- 2fos.pdb.
lyase 13-jan-06 2fos
Hg Cu Zn
Title: human carbonic anhydrase ii complexed with two-prong inhibitors
Author: k. m. jude, d. w. christianson
Keywords: zinc, inhibitor, copper
- 2fou.pdb.
lyase 14-jan-06 2fou
Hg Cu Zn
Title: human carbonic anhydrase ii complexed with two-prong inhibitors
Author: k. m. jude, d. w. christianson
Keywords: zinc, inhibitor, copper
- 2fov.pdb.
lyase 14-jan-06 2fov
Hg Cu Zn
Title: human carbonic anhydrase ii complexed with two-prong inhibitors
Author: k. m. jude, d. w. christianson
Keywords: zinc, inhibitor, copper
- 2foy.pdb.
lyase 14-jan-06 2foy
Cu Zn
Title: human carbonic anhydrase i complexed with a two-prong inhibitor
Author: k. m. jude, a. l. banerjee, m. k. haldar, s. manokaran, b. roy, s. mallik, d. k. srivastava, d. w. christianson
Keywords: zinc, inhibitor, copper
- 2fp1.pdb.
isomerase 15-jan-06 2fp1
Pb
Title: secreted chorismate mutase from mycobacterium tuberculosis
Author: m. okvist, r. dey, s. sasso, e. grahn, p. kast, u. krengel
- 2fp2.pdb.
isomerase 15-jan-06 2fp2
Title: secreted chorismate mutase from mycobacterium tuberculosis
Author: m. okvist, r. dey, s. sasso, e. grahn, p. kast, u. krengel
- 2fr0.pdb.
oxidoreductase 18-jan-06 2fr0
Title: the first ketoreductase of the erythromycin synthase (crystal form 1)
Author: a. t. keatinge-clay, r. m. stroud
- 2fr1.pdb.
oxidoreductase 18-jan-06 2fr1
Title: the first ketoreductase of the erythromycin synthase (crystal form 2)
Author: a. t. keatinge-clay, r. m. stroud
- 2fu5.pdb.
signaling protein 26-jan-06 2fu5
Zn
Title: structure of rab8 in complex with mss4
Author: a. itzen, o. pylypenko, r. s. goody, a. rak
Keywords: gef:gtpase nucleotide free complex, nucleotide exchange via unfolding of nucleotide binding region
- 2fvo.pdb.
translation 31-jan-06 2fvo
(cryo-electron microscopy)
Title: docking of the modified rf1 x-ray structure into the low resolution cryo-em map of e.coli 70s ribosome bound with rf1
Author: u. rawat, h. gao, a. zavialov, r. gursky, m. ehrenberg, j. frank
- 2fxu.pdb.
structural protein 06-feb-06 2fxu
Ca
Title: x-ray structure of bistramide a- actin complex at 1.35 a resolution.
Author: s. a. rizvi, v. tereshko, a. a. kossiakoff, s. a. kozmin
- 2fy6.pdb.
oxidoreductase 07-feb-06 2fy6
Cl
Title: structure of the n-terminal domain of neisseria meningitidis pilb
Author: f. m. ranaivoson, b. kauffmann, f. neiers, s. boschi-muller, g. branlant, f. favier
Keywords: x-ray structure, cytochrome maturation protein, thioredoxin, methionine sulfoxide reductase
- 2g06.pdb.
hydrolase 11-feb-06 2g06
Mg Se
Title: x-ray structure of mouse pyrimidine 5'-nucleotidase type 1, with bound magnesium(ii)
Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2g07.pdb.
hydrolase 11-feb-06 2g07
Mg F Be Se
Title: x-ray structure of mouse pyrimidine 5'-nucleotidase type 1, phospho-enzyme intermediate analog with beryllium fluoride
Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2g08.pdb.
hydrolase 11-feb-06 2g08
Mg F Al Se
Title: x-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product-transition complex analog with aluminum fluoride
Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2g09.pdb.
hydrolase 11-feb-06 2g09
Mg Se
Title: x-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product complex
Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2g0a.pdb.
hydrolase 11-feb-06 2g0a
Se Pb
Title: x-ray structure of mouse pyrimidine 5'-nucleotidase type 1 with lead(ii) bound in active site
Author: e. bitto, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2g39.pdb.
structural genomics, unknown function 17-feb-06 2g39
Se
Title: crystal structure of coenzyme a transferase from pseudomonas aeruginosa
Author: c. chang, e. evdokimova, m. kudritska, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: pseudomonas aeruginosa, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2g41.pdb.
signaling protein 21-feb-06 2g41
Title: crystal structure of the complex of sheep signalling glycoprotein with chitin trimer at 3.0a resolution
Author: d. b. srivastava, a. s. ethayathulla, j. kumar, a. bhushan, s. sharma, t. p. singh
Keywords: sps-40, crystal structure
- 2g43.pdb.
hydrolase 21-feb-06 2g43
Zn U
Title: structure of the znf ubp domain from deubiquitinating enzyme isopeptidase t (isot)
Author: f. e. reyes-turcu, j. r. horton, j. e. mullally, a. heroux, x. cheng, k. d. wilkinson
Keywords: deubiquitinating enzyme
- 2g45.pdb.
hydrolase 21-feb-06 2g45
Cl Zn
Title: co-crystal structure of znf ubp domain from the deubiquitinating enzyme isopeptidase t (isot) in complex with ubiquitin
Author: f. e. reyes-turcu, j. r. horton, j. e. mullally, a. heroux, x. cheng, k. d. wilkinson
Keywords: zinc finger, deubiquitinating enzyme
- 2g5w.pdb.
oxidoreductase 23-feb-06 2g5w
Title: x-ray crystal structure of arabidopsis thaliana 12- oxophytodienoate reductase isoform 3 (atopr3) in complex with 8-iso prostaglandin a1 and its cofactor, flavin mononucleotide.
Author: b. w. han, t. e. malone, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , b. g. fox, center for eukaryotic structural genomics (cesg)
Keywords: psi, center for eukaryotic structural genomics, cesg
- 2g62.pdb.
hydrolase activator 24-feb-06 2g62
Title: crystal structure of human ptpa
Author: a. magnusdottir, p. stenmark, c. arrowsmith, h. berglund, r. collins, a. edwards, m. ehn, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, m. hogbom, l. holmberg schiavone, t. kotenyova, p. nilsson-ehle, t. nyman, d. ogg, c. persson, j. sagemark, m. sundstrom, a. g. thorsell, s. van den berg, k. wallden, j. weigelt, p. nordlund
Keywords: mgc2184, pp2a, pr53, ptpa, protein phosphatase 2a, regulatory subunit b' (pr 53)
- 2g6d.pdb.
hydrolase 24-feb-06 2g6d
Title: human cathepsin s mutant with vinyl sulfone inhibitor cra- 14009
Author: j. r. somoza
Keywords: cysteine protease, proteinase, 14009
- 2g75.pdb.
immune system 27-feb-06 2g75
Title: crystal structure of anti-sars m396 antibody
Author: p. prabakaran, j. h. gan, y. feng, z. y. zhu, x. d. xiao, x. ji, d. s. dimitrov
Keywords: s protein, antibody, crystal structure, epitopes, vaccines, inhibitors
- 2g7r.pdb.
hydrolase 28-feb-06 2g7r
Title: x-ray structure of the death domain of the human mucosa associated lymphoid tissue lymphoma translocation protein 1
Author: j. r. walker, l. groot-wybenga, e. m. newman, p. j. finerty jr. , c. butler-cole, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, s. dhe-paganon
Keywords: alternative splicing, chromosomal translocation,hydrolase,protease,structural genomics consortium
- 2g7u.pdb.
structural genomics, unknown function 01-mar-06 2g7u
Se
Title: 2.3 a structure of putative catechol degradative operon regulator from rhodococcus sp. rha1
Author: h. zheng, t. skarina, m. chruszcz, m. cymborowski, m. grabowski, o. onopriyenko, a. savchenko, a. edwards, w. minor, midwest center for structural genomics (mcsg)
Keywords: iclr family, structural genomics, mcsg, psi, protein structure initiative, midwest center for structural genomics
- 2g7z.pdb.
structural genomics, unknown function 01-mar-06 2g7z
Cl Zn Se
Title: conserved hypothetical protein from streptococcus pyogenes m1 gas discloses long-fatty acid binding function
Author: b. nocek, l. volkart, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: lipid binding protein, psi, mcsg, hypothetical protein, structural genomics, protein structure initiative, midwest center for structural genomics
- 2g84.pdb.
structural genomics, unknown function 01-mar-06 2g84
Zn Na
Title: cytidine and deoxycytidylate deaminase zinc-binding region from nitrosomonas europaea.
Author: j. osipiuk, t. skarina, o. onopriyenko, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: zinc-binding region, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2g8z.pdb.
signaling protein 04-mar-06 2g8z
Title: crystal structure of the ternary complex of signalling protein from sheep (sps-40) with trimer and designed peptide at 2.5a resolution
Author: a. s. ethayathulla, d. b. srivastava, j. kumar, r. k. somvanshi, s. sharma, t. p. singh
Keywords: ternary complex, wpw, trisaccharide
- 2g9i.pdb.
ligase 06-mar-06 2g9i
Se
Title: crystal structure of homolog of f420-0:gamma-glutamyl ligase from archaeoglobus fulgidus reveals a novel fold.
Author: b. nocek, e. evdokimova, m. kudritska, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: homolog of f420-0:gamma-glutamyl ligase, gamma-glutamyl ligase, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2g9z.pdb.
transferase 07-mar-06 2g9z
Cl Mg
Title: thiamin pyrophosphokinase from candida albicans
Author: c. abergel, s. santini, v. monchois, t. rouselle, j. m. claverie, bacterial targets at igs-cnrs, france (bigs)
Keywords: tpk, thiamin pyrophosphokinase, structural genomics, profun, bacterial targets at igs-cnrs, france, bigs
- 2gdk.pdb.
transferase 16-mar-06 2gdk
Cl Zn
Title: crystal structure of an adp-glucose phosphorylase from arabidopsis thaliana with bound adp-glucose
Author: j. g. mccoy, g. e. wesenberg, g. n. phillips jr. , e. bitto, c. a. bingman, center for eukaryotic structural genomics (cesg)
Keywords: adp-glucose, galt-like, structural genomics functional follow-up study, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 2gdq.pdb.
structural genomics, unknown function 16-mar-06 2gdq
Title: crystal structure of mandelate racemase/muconate lactonizing enzyme from bacillus subtilis at 1.8 a resolution
Author: v. n. malashkevich, r. toro, j. m. sauder, k. d. schwinn, s. emtage, d. a. thompson, m. e. rutter, m. dickey, c. groshong, k. t. bain, j. m. adams, c. reyes, i. rooney, a. powell, a. boice, t. gheyi, s. ozyurt, s. atwell, s. r. wasserman, s. k. burley, a. sali, p. babbitt, u. pieper, j. a. gerlt, s. c. almo, new york structural genomics research consortium (nysgrc)
Keywords: tim-barrel, enolase, octamer, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2gdz.pdb.
oxidoreductase 17-mar-06 2gdz
Title: crystal structure of 15-hydroxyprostaglandin dehydrogenase type1, complexed with nad+
Author: e. s. pilka, k. guo, k. kavanagh, f. von delft, c. arrowsmith, j. weigelt, a. edwards, m. sundstrom, u. oppermann, structural genomics consortium (sgc)
Keywords: dehydrogenase, structural genomics, short-chain dehydrogenase/reductase, inflammation, structural genomics consortium, sgc
- 2gf0.pdb.
transport protein 21-mar-06 2gf0
Mg
Title: the crystal structure of the human diras1 gtpase in the inactive gdp bound state
Author: a. p. turnbull, e. papagrigoriou, x. yang, g. schoch, j. elkins, o. gileadi, e. salah, j. bray, l. wen-hwa, o. fedorov, f. e. niesen, f. von delft, j. weigelt, a. edwards, c. arrowsmith, m. sundstrom, d. doyle, structural genomics consortium (sgc)
Keywords: gdp/gtp binding, gtp hydrolysis, structural genomics, structural genomics consortium, sgc
- 2gf2.pdb.
oxidoreductase 21-mar-06 2gf2
Title: crystal structure of human hydroxyisobutyrate dehydrogenase
Author: e. papagrigoriou, e. salah, a. p. turnbull, c. smee, n. burgess, o. gileadi, f. von delft, f. gorrec, c. h. arrowsmith, j. weigelt, m. sundstrom, a. m. edwards, u. oppermann, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2gfo.pdb.
hydrolase 22-mar-06 2gfo
Zn Se
Title: structure of the catalytic domain of human ubiquitin carboxyl-terminal hydrolase 8
Author: j. r. walker, g. v avvakumov, s. xue, e. m. newman, p. j. finerty jr. , c. butler-cole, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, structural genomics consortium (sgc)
Keywords: protease, thiol protease, ubl conjugation pathway, deubiquitinating enzyme, dub, zinc ribbon, structural genomics consortium, sgc
- 2gh1.pdb.
structural genomics, unknown function 24-mar-06 2gh1
Se
Title: crystal structure of the putative sam-dependent methyltransferase bc2162 from bacillus cereus, northeast structural genomics target bcr20.
Author: f. forouhar, h. neely, s. jayaraman, m. ciao, r. xiao, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
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