Recent PDB releases or updates: week of 24 March 2006
- 1k7d.pdb.
hydrolase 19-oct-01 1k7d
Ca
Title: penicillin acylase mutant with phenyl proprionic acid
Author: c. m. h. hensgens, e. keizer, h. j. snijder, b. w. dijkstra
Keywords: helices, beta-strands, phenyl proprionic acid
- 1ks8.pdb.
hydrolase 11-jan-02 1ks8
Title: the structure of endoglucanase from termite, nasutitermes takasagoensis, at ph 2.5.
Author: s. khademi, l. a. guarino, h. watanabe, g. tokuda, e. f. meyer
Keywords: endoglucanase, termite, nasutitermes takasagoensis, glycosyl hydrolase, family 9, (alpha/alpha)6
- 1ksc.pdb.
hydrolase 11-jan-02 1ksc
Ca
Title: the structure of endoglucanase from termite, nasutitermes takasagoensis, at ph 5.6.
Author: s. khademi, l. a. guarino, h. watanabe, g. tokuda, e. f. meyer
Keywords: endoglucanase, termite, nasutitermes takasagoensis, glycosyl hydrolase, family 9, (alpha/alpha)6
- 1ksd.pdb.
hydrolase 12-jan-02 1ksd
Ca
Title: the structure of endoglucanase from termite, nasutitermes takasagoensis, at ph 6.5.
Author: s. khademi, l. a. guarino, h. watanabe, g. tokuda, e. f. meyer
Keywords: endoglucanase, termite, nasutitermes takasagoensis, glycosyl hydrolase, family 9, (alpha/alpha)6
- 1llo.pdb.
hydrolase 08-nov-95 1llo
Title: hevamine a (a plant endochitinase/lysozyme) complexed with allosamidin
Author: a. c. terwisscha van scheltinga, s. armand, k. h. kalk, a. isogai, b. henrissat, b. w. dijkstra
Keywords: lysozyme
- 1mfu.pdb.
hydrolase 13-aug-02 1mfu
Cl Ca
Title: probing the role of a mobile loop in human salivary amylase: structural studies on the loop-deleted mutant
Author: n. ramasubbu, c. ragunath, p. j. mishra
Keywords: acarbose complex, mutageneis, mobile loop, deletion mutant
- 1mfv.pdb.
hydrolase 13-aug-02 1mfv
Cl Ca
Title: probing the role of a mobile loop in human slaivary amylase: structural studies on the loop-deleted enzyme
Author: n. ramasubbu, c. ragunath, p. j. mishra
Keywords: mutagenesis, acarbose, inhibitor
- 1oc4.pdb.
oxidoreductase 05-feb-03 1oc4
Title: lactate dehydrogenase from plasmodium berghei
Author: v. j. winter, r. l. brady
Keywords: oxidoreductase, glycolysis, interconversion of pyruvate and lactate, 3-layer (aba) sandwich
- 1qc6.pdb.
structural protein 17-may-99 1qc6
Se
Title: evh1 domain from ena/vasp-like protein in complex with acta peptide
Author: a. a. fedorov, e. v. fedorov, f. b. gertler, s. c. almo
Keywords: evh1 domain, actin-based cell motility, interaction module
- 1s5z.pdb.
transferase 22-jan-04 1s5z
Title: ndp kinase in complex with adenosine phosphonoacetic acid
Author: y. chen, s. morera, c. pasti, a. angusti, n. solaroli, m. veron, j. janin, s. manfredini, d. deville-bonne
- 1w9i.pdb.
myosin 13-oct-04 1w9i
Mg F Be
Title: myosin ii dictyostelium discoideum motor domain s456y bound with mgadp-befx
Author: c. a. morris, p. -d. coureux, a. l. wells, a. houdusse, h. l. sweeney
Keywords: myosin,atpase,motor domain,mutant,muscle contraction
- 1w9j.pdb.
myosin 13-oct-04 1w9j
Mg F Al
Title: myosin ii dictyostelium discoideum motor domain s456y bound with mgadp-alf4
Author: c. a. morris, p. -d. coureux, a. l. wells, a. houdusse, h. l. sweeney
Keywords: myosin,atpase,motor domain,mutant,muscle contraction
- 1w9k.pdb.
myosin 13-oct-04 1w9k
Mg F Be
Title: dictyostelium discoideum myosin ii motor domain s456e with bound mgadp-befx
Author: c. a. morris, p. -d. coureux, a. l. wells, a. houdusse, h. l. sweeney
Keywords: myosin,muscle contraction,powerstroke, mutant
- 1w9l.pdb.
myosin 13-oct-04 1w9l
Mg F Al
Title: myosin ii dictyostelium discoideum motor domain s456e bound with mgadp-alf4
Author: c. a. morris, p. -d. coureux, a. l. wells, a. houdusse, h. l. sweeney
Keywords: myosin,powerstroke,motor domain,mutant, muscle contraction
- 1wrz.pdb.
metal binding protein/transferase 29-oct-04 1wrz
Ca
Title: calmodulin complexed with a peptide from a human death- associated protein kinase
Author: p. kursula, j. vahokoski, m. wilmanns
Keywords: protein kinase
- 1wvm.pdb.
hydrolase 16-dec-04 1wvm
Mg Ca
Title: crystal structure of psychrophilic subtilisin-like serine protease apa1 from antarctic psychrotroph pseudoaleromonas sp. as-11, complexed with inhibitor chymostatin
Author: d. dong, k. watanabe
Keywords: insert beta barrel domain
- 1ww8.pdb.
oxidoreductase 04-jan-05 1ww8
Se
Title: crystal structure of malic enzyme from pyrococcus horikoshii ot3
Author: n. k. lokanath, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 1y7x.pdb.
structural protein, protein binding 10-dec-04 1y7x
(NMR, 20 structures)
Title: solution structure of a two-repeat fragment of major vault protein
Author: g. kozlov, o. vavelyuk, o. minailiuc, d. banville, k. gehring, i. ekiel
Keywords: beta-sheet modules
- 1y9z.pdb.
hydrolase 16-dec-04 1y9z
Na Ca
Title: crystal structure of psychrophilic subtilisin-like serine protease from antarctic psychrotroph pseudoalteromonas sp. as-11 at 0.14 nm resolution
Author: d. dong, k. watanabe
Keywords: insert beta barrel domain
- 1yrr.pdb.
hydrolase 04-feb-05 1yrr
Title: crystal structure of the n-acetylglucosamine-6-phosphate deacetylase from escherichia coli k12 at 2.0 a resolution
Author: f. m. ferreira, r. aparicio, g. mendoza-hernandez, m. l. calcagno, g. oliva
Keywords: beta sandwich
- 1ytp.pdb.
hydrolase inhibitor 10-feb-05 1ytp
(NMR, 20 structures)
Title: solution structure of the c4a/c41a variant of the nicotiana alata proteinase inhibitor t1
Author: h. j. schirra, r. r. renda, m. a. anderson, d. j. craik
Keywords: potii inhibitor
- 1yy3.pdb.
isomerase 23-feb-05 1yy3
Title: structure of s-adenosylmethionine:trna ribosyltransferase- isomerase (quea)
Author: c. grimm, r. ficner, k. reuter
Keywords: quea, bacillus subtilis, quein queuosine, s- adenosylmethionine:trna ribosyltransferase-isomerase, trna- modification
- 1z2t.pdb.
lipid binding protein 09-mar-05 1z2t
(NMR, 24 structures)
Title: nmr structure study of anchor peptide ser65-leu87 of enzyme acholeplasma laidlawii monoglycosyldiacyl glycerol synthase (almgs) in dhpc micelles
Author: j. lind, e. barany-wallje, t. ramo, a. wieslander, l. maler
- 1z5g.pdb.
hydrolase 18-mar-05 1z5g
Mg
Title: crystal structure of salmonella typhimurium apha protein
Author: r. d. makde, v. kumar
Keywords: apha protein, metalloenzyme
- 1z5u.pdb.
hydrolase 20-mar-05 1z5u
Mg
Title: crystal structure of s. typhimurium apha complexed with cyclic-amp
Author: r. d. makde, v. kumar
Keywords: cyclic-amp complex of apha protein, metalloenzyme
- 1z76.pdb.
hydrolase 24-mar-05 1z76
Br
Title: crystal structure of an acidic phospholipase a2 (btha-i) from bothrops jararacussu venom complexed with p- bromophenacyl bromide
Author: a. j. magro, a. a. takeda, a. m. soares, m. r. fontes
Keywords: p- bromophenacyl bromide
- 1z7d.pdb.
transferase 24-mar-05 1z7d
Title: ornithine aminotransferase py00104 from plasmodium yoelii
Author: j. r. walker, z. alam, m. amani, j. lew, g. wasney, k. boulanger, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. vedadi, structural genomics consortium (sgc)
Keywords: sgc, malaria, plasmodium yoelii, ornithine aminotransferase
- 1z8c.pdb.
hydrolase/hydrolase inhibitor 30-mar-05 1z8c
Title: crystal structure of the complex of mutant hiv-1 protease (l63p, a71v, v82t, i84v) with a hydroxyethylamine peptidomimetic inhibitor boc-phe-psi[r-ch(oh)ch2nh]-phe- glu-phe-nh2
Author: j. duskova, t. skalova, j. dohnalek, h. petrokova, j. hasek
- 1z8d.pdb.
transferase 30-mar-05 1z8d
Title: crystal structure of human muscle glycogen phosphorylase a with amp and glucose
Author: c. m. lukacs, n. g. oikonomakos, r. l. crowther, l. n. hong, r. u. kammlott, w. levin, s. li, c. m. liu, d. lucas-mcgady, s. pietranico, l. reik
- 1z9q.pdb.
oxidoreductase activator 04-apr-05 1z9q
(NMR, 20 structures)
Title: solution structure of sh3 domain of p40phox
Author: s. adachi, k. ogura, y. fujioka, f. inagaki
- 1za7.pdb.
virus/viral protein 05-apr-05 1za7
Title: the crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.
Author: b. bothner, j. a. speir, c. qu, d. a. willits, m. j. young, j. e. johnson
Keywords: icosahedral particle, stablizing mutation, stable mutant, beta hexamer, beta barrel, bromovirus, point mutation
- 1zam.pdb.
hydrolase 06-apr-05 1zam
Title: ricin a-chain (recombinant) complex with urea
Author: j. h. carra, c. a. mchugh, s. mulligan, l. m. machiesky, c. b. millard
Keywords: ricinus communis, n-glycosidase, toxin
- 1zb0.pdb.
hydrolase 07-apr-05 1zb0
Title: ricin a-chain (recombinant) complex with n-methylurea
Author: j. h. carra, c. a. mchugh, s. mulligan, l. m. machiesky, c. b. millard
Keywords: ricinus communis, n-glycosidase, toxin
- 1zb2.pdb.
hydrolase 07-apr-05 1zb2
Title: ricin a-chain (recombinant) complex with acetamide
Author: j. h. carra, c. a. mchugh, s. mulligan, l. m. machiesky, c. b. millard
Keywords: ricinus communis, n-glycosidase, toxin
- 1zoq.pdb.
transcription/transferase 13-may-05 1zoq
Title: irf3-cbp complex
Author: b. qin, k. lin
Keywords: transferase
- 1zq3.pdb.
transcription/dna 18-may-05 1zq3
(NMR, 20 structures)
Title: nmr solution structure of the bicoid homeodomain bound to the consensus dna binding site taatcc
Author: j. m. baird-titus, m. rance, k. clark-baldwin, j. ma, d. vrushank
Keywords: double helix, helix-turn-helix, homeodomain, dna-binding domain, k50, recognition helix, transcription factor, translational control
- 1zrc.pdb.
gene regulation/dna 19-may-05 1zrc
Title: 4 crystal structures of cap-dna with all base-pair substitutions at position 6, cap-icap38 dna
Author: h. m. berman, a. a. napoli
Keywords: cap, cap-dna, catabolite gene activator protein, camp receptor protein, crp
- 1zrd.pdb.
gene regulation/dna 19-may-05 1zrd
Title: 4 crystal structures of cap-dna with all base-pair substitutions at position 6, cap-[6a;17t]icap38 dna
Author: h. m. berman, a. a. napoli
Keywords: cap, cap-dna, catabolite gene activator protein, camp receptor protein, crp
- 1zre.pdb.
gene regulation/dna 19-may-05 1zre
Title: 4 crystal structures of cap-dna with all base-pair substitutions at position 6, cap-[6g;17c]icap38 dna
Author: h. m. berman, a. a. napoli
Keywords: cap, cap-dna, catabolite gene activator protein, camp receptor protein, crp
- 1zrf.pdb.
gene regulation/dna 19-may-05 1zrf
Title: 4 crystal structures of cap-dna with all base-pair substitutions at position 6, cap-[6c;17g]icap38 dna
Author: h. m. berman, a. a. napoli
Keywords: cap, cap-dna, catabolite gene activator protein, camp receptor protein, crp
- 1zrh.pdb.
transferase 19-may-05 1zrh
Title: crystal structure of human heparan sulfate glucosamine 3-o- sulfotransferase 1 in complex with pap
Author: a. dong, l. dombrovski, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium
- 1zv6.pdb.
protein binding 01-jun-05 1zv6
(NMR, 21 structures)
Title: nmr structure of the human dematin headpiece s74e mutant
Author: z. g. jiang, c. j. mcknight
Keywords: actin binding domain, phosphorylation
- 1zx0.pdb.
transferase 06-jun-05 1zx0
Title: human guanidinoacetate n-methyltransferase with sah
Author: a. dong, h. wu, h. zeng, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: guanidinoacetate n-methyltransferase, structural genomics, structural genomics consortium
- 2a22.pdb.
protein transport 21-jun-05 2a22
Title: structure of vacuolar protein sorting 29 from cryptosporidium parvum
Author: s. brokx, y. zhao, z. alam, j. lew, j. weigelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, j. r. walker, structural genomics consortium (sgc)
Keywords: alpha-beta-beta-alpha sandwich , structural genomics, structural genomics consortium, sgc
- 2a4a.pdb.
lyase 28-jun-05 2a4a
Title: deoxyribose-phosphate aldolase from p. yoelii
Author: j. r. walker, m. amani, j. lew, j. wiegelt, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, r. hui, m. vedadi, structural genomics consortium (sgc)
Keywords: aldolase, tim beta/alpha barrel, deoc, dera, structural genomics, structural genomics consortium, sgc
- 2a5y.pdb.
apoptosis 01-jul-05 2a5y
Mg
Title: structure of a ced-4/ced-9 complex
Author: n. yan, q. liu, q. hao, l. gu, y. shi
Keywords: ced-9, ced-3 activation, apoptosis
- 2a7v.pdb.
transferase 06-jul-05 2a7v
Title: human mitochondrial serine hydroxymethyltransferase 2
Author: a. dong, h. wu, h. zeng, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2ah8.pdb.
luminescent protein 27-jul-05 2ah8
Title: rogfp1-r7. cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form.
Author: m. b. cannon, s. j. remington
Keywords: chromophore, disulfide
- 2aha.pdb.
luminescent protein 27-jul-05 2aha
Title: rogfp1-r8. cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form.
Author: m. b. cannon, s. j. remington
Keywords: chromophore, disulfide
- 2aif.pdb.
dna binding protein, cytokine 29-jul-05 2aif
Title: crystal structure of high mobility like protein, nhp2, putative from cryptosporidium parvum
Author: a. dong, y. zhao, j. lew, z. alam, m. melone, c. h. arrowsmith, a. m. edwards, j. weigelt, m. sundstrom, r. hui, a. bochkarev, j. artz, structural genomics consortium (sgc)
Keywords: high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, sgc
- 2ak5.pdb.
endocytosis/exocytosis 03-aug-05 2ak5
Title: beta pix-sh3 complexed with a cbl-b peptide
Author: d. jozic, n. cardenes, y. l. deribe, g. moncalian, d. hoeller, y. groemping, i. dikic, k. rittinger, j. bravo
Keywords: cin85, pix/cool, cbl, protein-protein interaction, x-ray, endocytosis
- 2akm.pdb.
lyase 03-aug-05 2akm
Mg
Title: fluoride inhibition of enolase: crystal structure of the inhibitory complex
Author: j. qin, g. chai, j. m. brewer, l. l. lovelace
- 2akz.pdb.
lyase 04-aug-05 2akz
Mg F
Title: fluoride inhibition of enolase: crystal structure of the inhibitory complex
Author: j. qin, g. chai, j. m. brewer, l. l. lovelace
- 2al3.pdb.
endocytosis/exocytosis 04-aug-05 2al3
(NMR, 20 structures)
Title: solution structure and backbone dynamics of an n-terminal ubiquitin-like domain in the glut4-tethering protein, tug
Author: m. c. tettamanzi, c. yu, j. s. bogan, m. e. hodsdon
- 2apb.pdb.
immune system 16-aug-05 2apb
Title: crystal structure of the s54n variant of murine t cell receptor vbeta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2apf.pdb.
immune system 16-aug-05 2apf
Title: crystal structure of the a52v/s54n/k66e variant of the murine t cell receptor v beta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2apt.pdb.
immune system 16-aug-05 2apt
Title: crystal structure of the g17e/s54n/k66e/q72h/e80v/l81s/t87s/g96v variant of the murine t cell receptor v beta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2apv.pdb.
immune system 16-aug-05 2apv
Title: crystal structure of the g17e/a52v/s54n/q72h/e80v/l81s/t87s/g96v variant of the murine t cell receptor v beta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2apw.pdb.
immune system 16-aug-05 2apw
Title: crystal structure of the g17e/a52v/s54n/k66e/e80v/l81s/t87s/g96v variant of the murine t cell receptor v beta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2apx.pdb.
immune system 16-aug-05 2apx
Title: crystal structure of the g17e/a52v/s54n/k66e/q72h/e80v/l81s/t87s/g96v variant of the murine t cell receptor v beta 8.2 domain
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
- 2aq1.pdb.
immune system 17-aug-05 2aq1
Title: crystal structure of t-cell receptor v beta domain variant complexed with superantigen sec3 mutant
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
Keywords: staphylococcal enterotoxin c3, superantigen, complex (toxin/receptor)
- 2aq2.pdb.
immune system 17-aug-05 2aq2
Zn Na
Title: crystal structure of t-cell receptor v beta domain variant complexed with superantigen sec3 mutant
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
Keywords: staphlococcal enterotoxin c3, complex structure
- 2aq3.pdb.
immune system 17-aug-05 2aq3
Title: crystal structure of t-cell receptor v beta domain variant complexed with superantigen sec3
Author: s. cho, c. p. swaminathan, j. yang, m. c. kerzic, r. guan, m. c. kieke, d. m. kranz, r. a. mariuzza, e. j. sundberg
Keywords: staphlococcal enterotoxin c3, complex structure
- 2avd.pdb.
transferase 29-aug-05 2avd
Title: crystal structure of human catechol-o-methyltransferase domain containing 1
Author: j. r. min, h. wu, h. zeng, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2axi.pdb.
ligase 05-sep-05 2axi
Cl
Title: hdm2 in complex with a beta-hairpin
Author: p. r. e. mittl, r. fasan, j. robinson, m. g. gruetter
Keywords: drug design, protein-protein interactions
- 2azr.pdb.
hydrolase 12-sep-05 2azr
Title: crystal structure of ptp1b with bicyclic thiophene inhibitor
Author: a. f. moretto, s. j. kirincich, w. x. xu, m. j. smith, z. k. wan, d. p. wilson, b. c. follows, e. binnun, d. joseph-mccarthy, k. foreman, d. v. erbe, y. l. zhang, s. k. tam, s. y. tam, j. lee
Keywords: hydrolyase, bicyclic thiophenes
- 2b07.pdb.
hydrolase 13-sep-05 2b07
Title: crystal structure of ptp1b with tricyclic thiophene inhibitor.
Author: a. f. moretto, s. j. kirincich, w. x. xu, m. j. smith, z. k. wan, d. p. wilson, b. c. follows, e. binnun, d. joseph-mccarthy, k. foreman, d. v. erbe, y. l. zhang, s. k. tam, s. y. tam, j. lee
Keywords: hydrolyase, tricyclic thiophenes
- 2b2o.pdb.
oxidoreductase 19-sep-05 2b2o
Na Fe
Title: crystal structure of native catalase-peroxidase katg at ph8.0
Author: x. carpena, b. wiseman, t. deemagarn, r. singh, j. switala, a. ivancich, i. fita, p. c. loewen
Keywords: katg, molecular switch, ph change
- 2b2q.pdb.
oxidoreductase 19-sep-05 2b2q
Na Fe
Title: crystal structure of native catalase-peroxidase katg at ph7.5
Author: x. carpena, b. wiseman, t. deemagarn, r. singh, j. switala, a. ivancich, i. fita, p. c. loewen
Keywords: katg, molecular switch, ph change
- 2b2r.pdb.
oxidoreductase 19-sep-05 2b2r
Na Fe
Title: crystal structure of an oxoferryl species of catalase- peroxidase katg at ph5.6
Author: x. carpena, b. wiseman, t. deemagarn, r. singh, j. switala, a. ivancich, i. fita, p. c. loewen
Keywords: katg, compound i, oxoferryl species
- 2b2s.pdb.
oxidoreductase 19-sep-05 2b2s
Na Fe
Title: crystal structure of an oxoferryl species of catalase- peroxidase katg at ph7.5
Author: x. carpena, b. wiseman, t. deemagarn, r. singh, j. switala, a. ivancich, i. fita, p. c. loewen
Keywords: katg, compound i, oxoferryl species
- 2b3r.pdb.
transferase 20-sep-05 2b3r
Title: crystal structure of the c2 domain of class ii phosphatidylinositide 3-kinase c2
Author: l. liu, x. song, d. he, c. komma, a. kita, j. v. verbasius, h. bellamy, k. miki, m. p. czech, g. w. zhou
Keywords: lipid binding, pi3-kinase
- 2b4l.pdb.
transport protein 26-sep-05 2b4l
Title: crystal structure of the binding protein opuac in complex with glycine betaine
Author: c. horn, l. sohn-boesser, j. breed, w. welte, l. schmitt, e. bremer
Keywords: closed liganded, abc-transporter, compatible solutes
- 2b4m.pdb.
transport protein 26-sep-05 2b4m
Title: crystal structure of the binding protein opuac in complex with proline betaine
Author: c. horn, l. sohn-boesser, j. breed, w. welte, l. schmitt, e. bremer
Keywords: closed liganded, abc-transporter, compatible solutes
- 2b6p.pdb.
membrane protein 03-oct-05 2b6p
Title: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore state
Author: t. gonen, y. cheng, p. sliz, y. hiroaki, y. fujiyoshi, s. c. harrison, t. walz
- 2b7d.pdb.
blood clotting 04-oct-05 2b7d
Title: factor viia inhibitors: chemical optimization, preclinical pharmacokinetics, pharmacodynamics, and efficacy in a baboon thrombosis model
Author: w. b. young, j. mordenti, s. torkelson, w. d. shrader, a. kolesnikov, r. rai, l. liu, h. hu, e. m. leahy, m. j. green, p. a. sprengeler, b. a. katz, c. yu, j. w. janc, k. c. elrod, u. m. marzec, s. r. hanson
- 2b7e.pdb.
structural protein 04-oct-05 2b7e
(NMR, 12 structures)
Title: first ff domain of prp40 yeast protein
Author: a. gasch, s. wiesner, p. martin-malpartida, x. ramirez-espain, l. ruiz, m. j. macias
- 2b8a.pdb.
hormone/growth factor 06-oct-05 2b8a
(NMR, 26 structures)
Title: high resolution structure of the hdgf pwwp domain
Author: s. m. lukasik, t. cierpicki, m. borloz, j. grembecka, a. everett, j. h. bushweller
Keywords: hdgf
- 2b9e.pdb.
transferase 11-oct-05 2b9e
Title: human nsun5 protein
Author: j. r. min, h. wu, h. zeng, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: nol1/nop2/sun domain family, structural genomics, structural genomics consortium, sgc
- 2bdl.pdb.
hydrolase 20-oct-05 2bdl
Title: cathepsin k complexed with a pyrrolidine ketoamide-based inhibitor
Author: l. m. shewchuk
Keywords: cysteine protease, catk, cato
- 2bnw.pdb.
dna-binding regulatory protein 05-apr-05 2bnw
Title: structural basis for cooperative binding of ribbon-helix- helix omega repressor to direct dna heptad repeats
Author: w. a. weihofen, a. cicek, f. pratto, j. c. alonso, w. saenger
Keywords: rhh, metj/arc superfamily, cooperative dna binding, direct repeats, inverted repeats, dna heptad 5'- a/t atcac a/t -3', inc18 family, plasmid, dna-binding regulatory protein
- 2bnz.pdb.
dna-binding regulatory protein 06-apr-05 2bnz
Title: structural basis for cooperative binding of ribbon-helix- helix omega repressor to inverted dna heptad repeats
Author: w. a. weihofen, a. cicek, f. pratto, j. c. alonso, w. saenger
Keywords: rhh, metj/arc superfamily, cooperative dna binding, direct repeats, inverted repeats, dna heptad 5'- a/t atcac a/t -3', inc18 family, plasmid, dna-binding regulatory protein
- 2bpn.pdb.
electron transport 18-apr-05 2bpn
Fe
(NMR, 20 structures)
Title: solution structure of desulfovibrio vulgaris (hildenborough) ferricytochrome c3, nmr, 20 structures
Author: a. c. messias, a. p. aguiar, l. brennan, a. v. xavier, d. l. turner
Keywords: hemeprotein, cytochrome c3, redox cooperativity, redox-bohr cooperativity, transduction, paramagnetic
- 2br3.pdb.
porin 01-may-05 2br3
Mg
Title: cmci-d160 mg
Author: l. m. oster, d. r. lester, a. terwisscha van scheltinga, m. svenda, c. genereux, i. andersson
Keywords: porin
- 2br4.pdb.
porin 01-may-05 2br4
Mg
Title: cmci-d160 mg-sam
Author: l. m. oster, d. r. lester, a. terwisscha van scheltinga, m. svenda, c. genereux, i. andersson
Keywords: porin
- 2br5.pdb.
porin 01-may-05 2br5
Title: cmci-n160 sah
Author: l. m. oster, d. r. lester, a. terwisscha van scheltinga, m. svenda, c. genereux, i. andersson
Keywords: porin
- 2bug.pdb.
hydrolase 13-may-05 2bug
(NMR, 19 structures)
Title: solution structure of the tpr domain from protein phosphatase 5 in complex with hsp90 derived peptide
Author: m. j. cliff, r. harris, d. barford, j. e. ladbury, m. a. williams
Keywords: protein phosphatase, hsp90 binding, hydrolase, iron, manganese, metal-binding
- 2c06.pdb.
toxin 16-aug-05 2c06
(NMR, 10 structures)
Title: nmr-based model of the complex of the toxin kid and a 5- nucleotide substrate rna fragment (auaca)
Author: m. b. kamphuis, a. m. j. j. bonvin, m. c. monti, m. lemonnier, a. munoz-gomez, r. h. h. van den heuvel, r. diaz-orejas, r. boelens
Keywords: dna replication, mazf, plasmid maintenance, post segregational killing, protein-rna complex, ribonuclease, rna cleavage, rnase, toxin-antitoxin, toxin
- 2c52.pdb.
transferase 25-oct-05 2c52
(NMR, 37 structures)
Title: structural diversity in cbp p160 complexes
Author: l. c. waters, b. yue, v. veverka, p. s. renshaw, j. bramham, s. matsuda, t. frenkiel, g. kelly, f. w. muskett, m. d. carr, d. m. heery
Keywords: polymorphism, proto-oncogene, ubl conjugation
- 2c6n.pdb.
hydrolase 10-nov-05 2c6n
Cl Zn
Title: structure of human somatic angiontensin-i converting enzyme n domain with lisinopril
Author: h. r. corradi, s. l. u. schwager, a. t. nichinda, e. d. sturrock, k. r. acharya
Keywords: n domain, zinc metallopeptidase, metalloprotease, angiotensin, lisinopril, alternative splicing, carboxypeptidase, glycoprotein, hydrolase, metal-binding, phosphorylation, protease, transmembrane
- 2c77.pdb.
hydrolase 18-nov-05 2c77
Mg
Title: ef-tu complexed with a gtp analog and the antibiotic ge2270 a
Author: a. parmeggiani, i. m. krab, s. okamura, r. c. nielsen, j. nyborg, p. nissen
Keywords: gtpase, translation elongation factor, protein synthesis, antibiotic, gtp-binding, nucleotide-binding, phosphorylation, protein biosynthesis
- 2c78.pdb.
hydrolase 17-nov-05 2c78
Mg
Title: ef-tu complexed with a gtp analog and the antibiotic pulvomycin
Author: a. parmeggiani, i. m. krab, s. okamura, r. c. nielsen, j. nyborg, p. nissen
Keywords: gtpase, translation elongation factor, protein synthesis, antibiotic, gtp-binding, nucleotide-binding, phosphorylation, protein biosynthesis, elongation factor
- 2c8s.pdb.
electron transport 06-dec-05 2c8s
Fe Ca
Title: cytochrome cl from methylobacterium extorquens
Author: p. a. williams, l. coates, f. mohammed, r. gill, p. t. erskine, s. p. wood, j. b. cooper, c. anthony
Keywords: heme, cytochrome c, electron transport, metal-binding
- 2cax.pdb.
transcriptional repressor 22-dec-05 2cax
Title: structural basis for cooperative binding of ribbon-helix- helix repressor omega to mutated direct dna heptad repeats
Author: w. a. weihofen, a. cicek, f. pratto, j. c. alonso, w. saenger
Keywords: dna- binding, regulatory protein
- 2cb4.pdb.
toxin 29-dec-05 2cb4
Se
Title: crystal structure of the catalytic domain of the mosquitocidal toxin from bacillus sphaericus, mutant e197q
Author: d. j. reinert, i. carpusca, k. aktories, g. e. schulz
Keywords: adp-ribosyltransferase
- 2cb6.pdb.
toxin 29-dec-05 2cb6
Title: crystal structure of the catalytic domain of the mosquitocidal toxin from bacillus sphaericus, mutant e195q
Author: d. j. reinert, i. carpusca, k. aktories, g. e. schulz
Keywords: adp-ribosyltransferase
- 2cfi.pdb.
oxidoreductase 21-feb-06 2cfi
Title: the hydrolase domain of human 10-fthfd in complex with 6- formyltetrahydropterin
Author: p. kursula, p. stenmark, c. arrowsmith, a. edwards, m. ehn, s. graslund, m. hammarstrom, m. hallberg, t. kotenyova, p. nilsson-ehle, p. nordlund, d. j. ogg, c. persson, j. sagemark, h. schuler, m. sundstrom, a. thorsell, j. weigelt
Keywords: folate binding, nadp, one-carbon metabolism, oxidoreductase, phosphopantetheine
- 2cfp.pdb.
transport 22-feb-06 2cfp
Hg
Title: sugar free lactose permease at acidic ph
Author: o. mirza, l. guan, g. verner, s. iwata, h. r. kaback
Keywords: transport mechanism, lactose/h+ symport, sugar transport, transmembrane, formylation
- 2cfq.pdb.
transport 22-feb-06 2cfq
Hg
Title: sugar free lactose permease at neutral ph
Author: o. mirza, l. guan, g. verner, s. iwata, h. r. kaback
Keywords: transport mechanism, lactose/h+ symport, sugar transport, transmembrane, formylation
- 2chh.pdb.
lectin 15-mar-06 2chh
U Ca
Title: ralstonia solanacearum high-affinity mannose-binding lectin
Author: e. p. mitchell, m. wimmerova, a. imberty
Keywords: sugar-binding protein, d-mannose, plant pathogen, hypothetical protein
- 2d1q.pdb.
oxidoreductase 31-aug-05 2d1q
Title: crystal structure of the thermostable japanese firefly luciferase complexed with mgatp
Author: t. nakatsu, s. ichiyama, j. hiratake, a. saldanha, n. kobashi, k. sakata, h. kato
Keywords: beta barrel, alpha+beta
- 2d1r.pdb.
oxidoreductase 31-aug-05 2d1r
Title: crystal structure of the thermostable japanese firefly luciferase complexed with oxyluciferin and amp
Author: t. nakatsu, s. ichiyama, j. hiratake, a. saldanha, n. kobashi, k. sakata, h. kato
Keywords: beta barrel, alpha+beta
- 2d1s.pdb.
oxidoreductase 31-aug-05 2d1s
Cl
Title: crystal structure of the thermostable japanese firefly luciferase complexed with high-energy intermediate analogue
Author: t. nakatsu, s. ichiyama, j. hiratake, a. saldanha, n. kobashi, k. sakata, h. kato
Keywords: beta barrel, alpha+beta
- 2d1t.pdb.
oxidoreductase 31-aug-05 2d1t
Cl
Title: crystal structure of the thermostable japanese firefly luciferase red-color emission s286n mutant complexed with high-energy intermediate analogue
Author: t. nakatsu, s. ichiyama, j. hiratake, a. saldanha, n. kobashi, k. sakata, h. kato
Keywords: beta barrel, alpha+beta
- 2dfo.pdb.
oxygen storage/transport 03-mar-06 2dfo
Fe
Title: 1.25a resolution crsytal structure of human hemoglobin in the oxy form
Author: s. -y. park, t. yokoyama, n. shibayama, y. shiro, r. h. t. tame
Keywords: high resolution, crystal structure
- 2dfq.pdb.
oxygen storage/transport 03-mar-06 2dfq
Fe
Title: 1.25a resolution structure of human hemoglobin in the deoxy form
Author: s. -y. park, t. yokoyama, n. shibayama, y. shiro, r. h. t. tame
Keywords: high resolution, crystal structure
- 2esv.pdb.
immune system 27-oct-05 2esv
I
Title: structure of the hla-e-vmaprtlil/kk50.4 tcr complex
Author: h. l. hoare, j. rossjohn
Keywords: tcr, hla-e, cmv, pmhc/tcr complex
- 2etw.pdb.
cell cycle/dna 27-oct-05 2etw
Title: principles of protein-dna recognition revealed in the structural analysis of ndt80-mse dna complexes
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold, b-dna
- 2etz.pdb.
transferase 27-oct-05 2etz
(NMR, minimized average structure)
Title: the nmr minimized average structure of the itk sh2 domain bound to a phosphopeptide
Author: m. sundd, e. v. pletneva, d. b. fulton, a. h. andreotti
Keywords: interleukin-2 tyrosine kinase, itk, t-cell specific kinase, tsk, src homology 2, sh2, proline, phosphotyrosine binding
- 2eu0.pdb.
transferase 27-oct-05 2eu0
(NMR, 20 structures)
Title: the nmr ensemble structure of the itk sh2 domain bound to a phosphopeptide
Author: m. sundd, e. v. pletneva, d. b. fulton, a. h. andreotti
Keywords: interleukin-2 tyrosine kinase, itk, t-cell specific kinase, tsk, src homology 2, sh2, proline, phosphotyrosine binding
- 2euv.pdb.
cell cycle/dna 30-oct-05 2euv
Title: principles of protein-dna recognition revealed in the structural analysis of ndt80-mse dna complexes
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2euw.pdb.
cell cycle/dna 30-oct-05 2euw
Title: structure of a ndt80-dna complex (mse mutant ma4t)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2eux.pdb.
cell cycle/dna 30-oct-05 2eux
Title: structure of a ndt80-dna complex (mse variant va4g)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2euz.pdb.
cell cycle/dna 30-oct-05 2euz
Title: structure of a ndt80-dna complex (mse mutant mc5t)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2evf.pdb.
cell cycle/dna 31-oct-05 2evf
Title: structure of a ndt80-dna complex (mse mutant ma6t)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2evg.pdb.
cell cycle/dna 31-oct-05 2evg
Title: structure of a ndt80-dna complex (mse mutant ma7t)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2evh.pdb.
cell cycle/dna 31-oct-05 2evh
Title: structure of a ndt80-dna complex (mse mutant ma7g)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2evi.pdb.
cell cycle/dna 31-oct-05 2evi
Title: structure of a ndt80-dna complex (mse mutant ma8t)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2evj.pdb.
cell cycle/dna 31-oct-05 2evj
Title: structure of an ndt80-dna complex (mse mutant ma9c)
Author: j. s. lamoureux, j. n. glover
Keywords: ig-fold transcription factor
- 2ex4.pdb.
transferase 07-nov-05 2ex4
Title: crystal structure of human methyltransferase ad-003 in complex with s-adenosyl-l-homocysteine
Author: j. r. min, h. wu, h. zeng, p. loppnau, m. sundstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, a. n. plotnikov, structural genomics consortium (sgc)
Keywords: structural genomics, sgc, structural genomics consortium, sgc
- 2eyr.pdb.
immune system 09-nov-05 2eyr
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt12
- 2eys.pdb.
immune system 09-nov-05 2eys
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt15
- 2eyt.pdb.
immune system 09-nov-05 2eyt
Title: a structural basis for selection and cross-species reactivity of the semi-invariant nkt cell receptor in cd1d/glycolipid recognition
Author: l. kjer-nielsen, n. a. borg
Keywords: nkt cell receptor, nkt15
- 2f16.pdb.
hydrolase 14-nov-05 2f16
B
Title: crystal structure of the yeast 20s proteasome in complex with bortezomib
Author: m. groll
Keywords: complex structure covalently bound to the synthetic inihibtor bortezomib
- 2f1m.pdb.
transport protein 14-nov-05 2f1m
Se
Title: conformational flexibility in the multidrug efflux system protein acra
Author: j. mikolosko, k. bobyk, h. i. zgurskaya, p. ghosh
Keywords: lipoyl domain, beta barrel
- 2f4i.pdb.
structural genomics, unknown function 23-nov-05 2f4i
Cl Mg Se
Title: crystal structure of hypothetical protein (tm0957) from thermotoga maritima at 2.25 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2f9b.pdb.
hydrolase/blood clotting 05-dec-05 2f9b
Title: discovery of novel heterocyclic factor viia inhibitors
Author: r. rai, a. kolesnikov, p. a. sprengeler, s. torkelson, t. ton, b. a. katz, c. yu, j. hendrix, w. d. shrader, r. stephens, r. cabuslay, e. sanford, w. b. young
Keywords: short hydrogen bond, active site-directed inhibitor
- 2f9n.pdb.
hydrolase 06-dec-05 2f9n
Title: crystal structure of the recombinant human alpha i tryptase mutant k192q/d216g in complex with leupeptin
Author: k. b. rohr, t. selwood, u. marquardt, r. huber, n. m. schechter, w. bode, m. e. than
Keywords: leupeptin, trypsin-like, difucosylation
- 2f9o.pdb.
hydrolase 06-dec-05 2f9o
Title: crystal structure of the recombinant human alpha i tryptase mutant d216g
Author: k. b. rohr, t. selwood, u. marquardt, r. huber, n. m. schechter, w. bode, m. e. than
Keywords: trypsin-like, difucosylation
- 2f9p.pdb.
hydrolase 06-dec-05 2f9p
Title: crystal structure of the recombinant human alpha i tryptase mutant d216g in complex with leupeptin
Author: k. b. rohr, t. selwood, u. marquardt, r. huber, n. m. schechter, w. bode, m. e. than
Keywords: leupeptin, trypsin-like, difucosylation
- 2fct.pdb.
biosynthetic protein 12-dec-05 2fct
Cl Fe
Title: syrb2 with fe(ii), chloride, and alpha-ketoglutarate
Author: l. c. blasiak, c. l. drennan
Keywords: cupin, halogenase
- 2fcu.pdb.
biosynthetic protein 12-dec-05 2fcu
Title: syrb2 with alpha-ketoglutarate
Author: l. c. blasiak, c. l. drennan
Keywords: cupin, halogenase
- 2fcv.pdb.
biosynthetic protein 12-dec-05 2fcv
Br Fe
Title: syrb2 with fe(ii), bromide, and alpha-ketoglutarate
Author: l. c. blasiak, c. l. drennan
Keywords: cupin, halogenase
- 2fdd.pdb.
hydrolase 13-dec-05 2fdd
Title: crystal structure of hiv protease d545701 bound with gw0385
Author: r. x. xu
Keywords: inhibitor
- 2fe8.pdb.
hydrolase 15-dec-05 2fe8
Zn Br
Title: sars coronavirus papain-like protease: structure of a viral deubiquitinating enzyme
Author: k. ratia, b. d. santarsiero, a. d. mesecar
- 2ff3.pdb.
structural protein/contractile protein 19-dec-05 2ff3
Ca
Title: crystal structure of gelsolin domain 1:n-wasp v2 motif hybrid in complex with actin
Author: b. xue, a. h. aguda, r. c. robinson
- 2ff6.pdb.
structural protein/contractile protein 19-dec-05 2ff6
Ca
Title: crystal structure of gelsolin domain 1:ciboulot domain 2 hybrid in complex with actin
Author: a. h. aguda, b. xue, r. c. robinson
- 2fhl.pdb.
sugar binding protein 26-dec-05 2fhl
Title: avidin related protein (avr4)-bna complex
Author: o. livnah, m. prizant
Keywords: avr4, streptavidin, high-affinity, hydrolytic activity
- 2fhn.pdb.
sugar binding protein 26-dec-05 2fhn
Title: avidin related protein avr4 (c122s, k109i mutant) in complex with bna
Author: o. livnah, m. prizant
Keywords: streptavidin, avr4, high affinity, hydrolytic activity
- 2fhy.pdb.
hydrolase 27-dec-05 2fhy
Cl Mg
Title: structure of human liver fpbase complexed with a novel benzoxazole as allosteric inhibitor
Author: c. abad-zapatero
Keywords: benzoxazole, intersubunit allosteric inhibition of human fpbase
- 2fid.pdb.
protein turnover/endocytosis 29-dec-05 2fid
Zn
Title: crystal structure of a bovine rabex-5 fragment complexed with ubiquitin
Author: s. lee, j. h. hurley
Keywords: helix
- 2fie.pdb.
hydrolase 29-dec-05 2fie
Cl
Title: structure of human liver fbpase complexed with potent benzoxazole allosteric inhibitors
Author: c. abad-zapatero
Keywords: benzoxazole, intersubunit allosteric inhibitors of human liver fbpase
- 2fif.pdb.
protein turnover/endocytosis 29-dec-05 2fif
Zn
Title: crystal structure of a bovine rabex-5 fragment complexed with ubiquitin
Author: s. lee, j. h. hurley
Keywords: helix
- 2fik.pdb.
immune system 29-dec-05 2fik
Title: structure of a microbial glycosphingolipid bound to mouse cd1d
Author: d. wu, d. m. zajonc
Keywords: cd1d, mhc-fold, immune system, bacterial antigen, tcr
- 2fix.pdb.
hydrolase 30-dec-05 2fix
Cl
Title: structure of human liver fbpase complexed with potent benzoxazole allosteric inhibitiors
Author: c. abad-zapatero
Keywords: benzoxazole, intersubunit allosteric inhibitors of human liver fbpase
- 2fk6.pdb.
hydrolase/rna 04-jan-06 2fk6
Zn
Title: crystal structure of rnase z/trna(thr) complex
Author: i. li de la sierra-gallay, n. mathy, o. pellegrini, c. condon
- 2fm8.pdb.
chaperone/cell invasion 08-jan-06 2fm8
Title: crystal structure of the salmonella secretion chaperone invb in complex with sipa
Author: m. lilic, m. vujanac, c. e. stebbins
Keywords: chaperone, translocation, protein folding, virulence, salmonella, bacterial
- 2fm9.pdb.
cell invasion 08-jan-06 2fm9
Title: structure of salmonella sipa residues 48-264
Author: m. lilic, m. vujanac, c. e. stebbins
Keywords: type ii secretion, sipa, virulence, bacterial
- 2fnj.pdb.
protein transport/signaling protein 11-jan-06 2fnj
Title: crystal structure of a b30.2/spry domain-containing protein gustavus in complex with elongin b and elongin c
Author: j. s. woo, b. h. oh
Keywords: lectin-like, b30.2, spry
- 2fno.pdb.
structural genomics, unknown function 11-jan-06 2fno
Se
Title: crystal structure of putative glutathione s-transferase (15162326) from agrobacterium tumefaciens at 2.00 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative glutathione s-transferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2fny.pdb.
hydrolase 12-jan-06 2fny
Title: homobelactosin c bound to the yeast 20s proteasome
Author: m. groll
- 2fo0.pdb.
transferase 12-jan-06 2fo0
Cl
Title: organization of the sh3-sh2 unit in active and inactive forms of the c-abl tyrosine kinase
Author: j. kuriyan
Keywords: autoinhibition, myristoylation, sh3-sh2 clamp, phosphoserine
- 2fo1.pdb.
gene regulation/signalling protein/dna 12-jan-06 2fo1
Se
Title: crystal structure of the csl-notch-mastermind ternary complex bound to dna
Author: j. j. wilson, r. a. kovall
Keywords: protein-dna complex, double helix, ankyrin repeat
- 2fpq.pdb.
toxin 16-jan-06 2fpq
K Zn
Title: crystal structure of botulinum neurotoxin type d light chain
Author: j. w. arndt, q. chai, t. christian, r. c. stevens
- 2fq5.pdb.
unknown function 17-jan-06 2fq5
(NMR, minimized average structure)
Title: nmr structure of 2f associated with lipid disc
Author: v. k. mishra, g. m. anantharamaiah, n. r. krishna
Keywords: class a helix
- 2fq8.pdb.
unknown function 17-jan-06 2fq8
(NMR, 63 structures)
Title: nmr structure of 2f associated with lipid disc
Author: v. k. mishra, g. m. anantharamaiah, n. r. krishna
Keywords: class a helix
- 2fq9.pdb.
hydrolase 17-jan-06 2fq9
F
Title: cathepsin s with nitrile inhibitor
Author: j. r. somoza
Keywords: cysteine protease, antigen presentation, drug design
- 2fs8.pdb.
hydrolase 21-jan-06 2fs8
Title: human beta-tryptase ii with inhibitor cra-29382
Author: j. r. somoza
Keywords: proteinase, 29382
- 2fuc.pdb.
isomerase 26-jan-06 2fuc
Mg Se
Title: human alpha-phosphomannomutase 1 with mg2+ cofactor bound
Author: n. r. silvaggi, c. zhang, z. lu, d. dunaway-mariano, k. n. allen
Keywords: protein glycosylation, carbohydrate- deficient glycoprotein syndrome, haloalkanoic acid dehalogenase superfamily
- 2fue.pdb.
isomerase 26-jan-06 2fue
Mg Se
Title: human alpha-phosphomannomutase 1 with d-mannose 1-phosphate and mg2+ cofactor bound
Author: n. r. silvaggi, c. zhang, z. lu, d. dunaway-mariano, k. n. allen
Keywords: enzyme-product complex, protein glycosylation, carbohydrate-deficient glycoprotein syndrome, haloalkanoic acid dehalogenase superfamily
- 2fug.pdb.
oxidoreductase 26-jan-06 2fug
Fe
Title: crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus
Author: l. a. sazanov, p. hinchliffe
Keywords: electron transport, respiratory chain
- 2fyw.pdb.
structural genomics, unknown function 08-feb-06 2fyw
Se
Title: crystal structure of a conserved hypothetical protein from streptococcus pneumoniae tigr4
Author: b. nocek, c. hatzos, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: hypothetical protein, psi, midwest center for structural genomics, mcsg, protein structure initiative
- 2fzt.pdb.
structural genomics, unknown function 10-feb-06 2fzt
Se
Title: crystal structure of hypothetical protein (tm0693) from thermotoga maritima at 2.05 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2g03.pdb.
structural genomics, unknown function 10-feb-06 2g03
Se
Title: structure of a putative cell filamentation protein from neisseria meningitidis.
Author: m. e. cuff, l. bigelow, m. bargassa, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: cell division, chromosome partitioning, fic protein family, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2g15.pdb.
transferase 13-feb-06 2g15
Title: structural characterization of autoinhibited c-met kinase
Author: w. wang, c. zhang, a. marimuthu, h. i. krupka, m. tabrizizad, r. shelloe, u. mehra, k. eng, h. nguyen, c. settachatgul, b. powell, m. v. milburn, b. l. west
- 2g17.pdb.
oxidoreductase 13-feb-06 2g17
Se
Title: the structure of n-acetyl-gamma-glutamyl-phosphate reductase from salmonella typhimurium.
Author: m. e. cuff, m. zhou, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg
- 2g1z.pdb.
deoxyribonucleic acid 15-feb-06 2g1z
Title: x-ray structure of the oligonucleotide sequence d(aaattt)
Author: n. valls, a. santaolalla, l. campos, j. a. subirana
Keywords: adenine, thymine
- 2g5d.pdb.
hydrolase 22-feb-06 2g5d
Title: crystal structure of mlta from neisseria gonorrhoeae monoclinic form
Author: c. davies
Keywords: beta barrel
- 2g76.pdb.
oxidoreductase 27-feb-06 2g76
Title: crystal structure of human 3-phosphoglycerate dehydrogenase
Author: a. p. turnbull, e. salah, p. savitsky, o. gileadi, f. von delft, a. edwards, c. arrowsmith, j. weigelt, m. sundstrom, u. oppermann, structural genomics consortium (sgc)
Keywords: phosphoglycerate dehydrogenase deficiency, serine metabolism, 2-hydroxyacid dehydrogenases, structural genomics, structural genomics consortium, sgc
- 2g8l.pdb.
structural genomics, unknown function 02-mar-06 2g8l
Se
Title: crystal structure of hypothetical protein (3258004) from pyrococcus horikoshii at 2.04 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2g93.pdb.
metal binding protein 05-mar-06 2g93
Zn Fe
Title: ligand recognition site in c-lobe of lactoferrin: crystal structure of the complex of c-lobe of bovine lactoferrin with methyl alpha-d-mannopyranoside at 1.9 a resolution
Author: n. singh, s. sharma, t. p. singh
Keywords: sugar binding
- 2ga5.pdb.
chaperone 07-mar-06 2ga5
(NMR, 20 structures)
Title: yeast frataxin
Author: y. he, s. l. alam, s. v. proteasa, y. zhang, e. lesuisse, a. dancis
- 2gab.pdb.
hormone/growth factor 08-mar-06 2gab
Cl
Title: human transthyretin (ttr) complexed with hydroxylated polychlorinated biphenyl-4-hydroxy-3,3',5,4'- tetrachlorobiphenyl
Author: s. k. palaninathan, c. smith, s. h. safe, j. w. kelly, j. c. sacchettini
Keywords: amyloid, transthyretin
- 2gan.pdb.
structural genomics, unknown function 09-mar-06 2gan
Se
Title: crystal structure of a putative acetyltransferase from pyrococcus horikoshii, northeast structural genomics target jr32.
Author: f. forouhar, m. abashidze, s. jayaraman, h. janjua, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2gao.pdb.
protein transport 09-mar-06 2gao
U
Title: crystal structure of human sar1a in complex with gdp
Author: j. wang, s. dimov, w. tempel, d. yaniw, c. arrowsmith, a. edwards, m. sundstrom, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: structural genomics consortium, gdp, sgc
- 2gb0.pdb.
oxidoreductase 09-mar-06 2gb0
Cl
Title: monomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme
Author: p. trickey, m. a. wagner, m. s. jorns, f. s. mathews
- 2gb3.pdb.
transferase 09-mar-06 2gb3
Se
Title: crystal structure of aspartate aminotransferase (tm1698) from thermotoga maritima at 2.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: aspartate aminotransferase, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2gc9.pdb.
structural genomics, unknown function 13-mar-06 2gc9
Se
Title: crystal structure of (pc05870a) from lactobacillus plantarum at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS