Recent PDB releases or updates: week of 9 December 2005
- 1kik.pdb.
transferase 03-dec-01 1kik
(NMR, 25 structures)
Title: sh3 domain of lymphocyte specific kinase (lck)
Author: l. briese, d. willbold
Keywords: tyrosine kinase, signal transduction, lck
- 1ssz.pdb.
surface active protein 24-mar-04 1ssz
(infrared spectroscopy)
Title: conformational mapping of mini-b: an n-terminal/c-terminal construct of surfactant protein b using 13c-enhanced fourier transform infrared (ftir) spectroscopy
Author: a. j. waring, f. j. walther, l. m. gordon, j. m. hernandez-juviel, t. hong, m. a. sherman, c. alonso, t. alig, a. braun, d. bacon, j. a. zasadzinski
Keywords: saposin
- 1ta1.pdb.
hydrolase 19-may-04 1ta1
Mn
Title: h141c mutant of rat liver arginase i
Author: e. cama, j. d. cox, d. e. ash, d. w. christianson
Keywords: binuclear manganese cluster, h141c mutation
- 1tbh.pdb.
hydrolase 20-may-04 1tbh
Mn
Title: h141d mutant of rat liver arginase i
Author: e. cama, j. d. cox, d. e. ash, d. w. christianson
Keywords: h141d, binuclear manganese cluster
- 1tbj.pdb.
hydrolase 20-may-04 1tbj
Mn
Title: h141a mutant of rat liver arginase i
Author: e. cama, j. d. cox, d. e. ash, d. w. christianson
Keywords: h141a mutant, binuclear manganese cluster
- 1tbl.pdb.
hydrolase 20-may-04 1tbl
Mn
Title: h141n mutant of rat liver arginase i
Author: e. cama, j. d. cox, d. e. ash, d. w. christianson
Keywords: h141n mutant, binuclear manganese cluster
- 1u0y.pdb.
chaperone 14-jul-04 1u0y
Title: n-domain of grp94 lacking in complex with the novel ligand n-propyl carboxyamido adenosine, npca
Author: d. t. gewirth, r. m. immormino
Keywords: hsp90, bergerat, chaperone, endoplasmic reticulum, neca, adenosine, npca
- 1u35.pdb.
structural protein/dna 20-jul-04 1u35
Title: crystal structure of the nucleosome core particle containing the histone domain of macroh2a
Author: s. chakravarthy, s. k. gundimella, c. caron, p. y. perche, j. r. pehrson, s. khochbin, k. luger
Keywords: ncp, histone fold, histone variant, macroh2a
- 1u6z.pdb.
hydrolase 02-aug-04 1u6z
Title: structure of an e. coli exopolyphosphatase: insight into the processive hydrolysis of polyphosphate and its regulation
Author: m. s. hasson, j. alvarado, d. a. sanders
Keywords: askha (acetate and sugar kinases, hsc70, actin) superfamily, hd metal dependent phosphohydrolase superfamily, polyphosphate, twenty-nine sulfates
- 1ub9.pdb.
transcription 03-apr-03 1ub9
Title: structure of the transcriptional regulator homologue protein from pyrococcus horikoshii ot3
Author: u. okada, n. sakai, y. tajika, m. yao, n. watanabe, i. tanaka
Keywords: winged helix motif, structural genomics
- 1v7b.pdb.
gene reguration 16-dec-03 1v7b
Title: tetr-family transcription factor cgl2612 from c.glutamicum
Author: h. itou, m. yao, n. watanabe, i. tanaka
- 1w6u.pdb.
oxidoreductase 24-aug-04 1w6u
Title: structure of human decr ternary complex
Author: m. s. alphey, e. byres, d. li, w. n. hunter
Keywords: short chain dehydrogenase, beta- oxidation, nadp, oxidoreductase, reductase
- 1w86.pdb.
dna complex 16-sep-04 1w86
(NMR, 20 structures)
Title: solution structure of an dsdna:lna triplex
Author: j. j. sorensen, j. t. nielsen, m. petersen
Keywords: dna, triplex, nmr spectroscopy, structure
- 1wbe.pdb.
glycolipid transfer protein 01-nov-04 1wbe
Title: x-ray structure of bovine gltp
Author: t. t. airenne, h. kidron, g. west, y. nymalm, m. nylund, p. mattjus, t. a. salminen
Keywords: acetylation, lipid transport
- 1wbg.pdb.
complex (blood coagulation/inhibitor) 01-nov-04 1wbg
Cl
Title: active site thrombin inhibitors
Author: m. j. hartshorn, c. w. murray, a. cleasby, m. frederickson, i. j. tickle, h. jhoti
Keywords: blood coagulation, acute phase, calcium-binding, disease mutation, gamma-carboxyglutamic acid, glycoprotein, hydrolase, kringle, polymorphisme, vitamin k, zymogen, sulfation
- 1wc7.pdb.
antibody 08-nov-04 1wc7
I
Title: fab fragment of plp-dependent catalytic antibody 15a9 in complex with phosphopyridoxyl-l-alanine
Author: b. golinelli-pimpaneau, p. christen
Keywords: transamination, pyridoxal-phosphate, phosphopyridoxyl-l-alanine
- 1wrj.pdb.
transferase 18-oct-04 1wrj
Title: crystal structure of o6-methylguanine methyltransferase from sulfolobus tokodaii
Author: m. kuroda, m. tsunoda, k. t. nakamura
- 1wu7.pdb.
ligase 01-dec-04 1wu7
Se
Title: crystal structure of histidyl-trna synthetase from thermoplasma acidophilum
Author: y. tanaka, n. sakai, m. yao, n. watanabe, t. tamura, i. tanaka
Keywords: structural genomics, dimer
- 1wuw.pdb.
plant protein 09-dec-04 1wuw
Title: crystal structure of beta hordothionin
Author: k. a. johnson, e. kim, m. m. teeter, s. w. suh, b. stec
Keywords: dimer
- 1wz5.pdb.
toxin 24-feb-05 1wz5
(NMR, minimized average structure)
Title: solution structure of pi1-3p
Author: g. ferrat
Keywords: toxin
- 1x1z.pdb.
lyase 15-apr-05 1x1z
Title: orotidine 5'-monophosphate decarboxylase (odcase) complexed with bmp (produced from 6-cyanoump)
Author: m. fujihashi, a. m. bello, e. poduch, l. wei, s. c. annedi, e. f. pai, l. p. kotra
Keywords: barbituric acid ribosyl 5'-monophosphate (bmp), 6-cyanoump
- 1x7k.pdb.
antimicrobial protein 14-aug-04 1x7k
(NMR, 16 structures)
Title: pv5 nmr solution structure
Author: j. p. powers, a. tan, a. ramamoorthy, r. e. hancock
Keywords: polyphemusin variant, beta hairpin, disulfide bridge, antimicrobial peptide
- 1xjn.pdb.
oxidoreductase 23-sep-04 1xjn
Cl
Title: structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: datp-cdp complex
Author: k. -m. larsson, a. jordan, r. eliasson, p. reichard, d. t. logan, p. nordlund
Keywords: 10 alpha-beta barrel, allosteric regulation, substrate specificity, protein-nucleotide complex
- 1xk0.pdb.
oxidoreductase 26-sep-04 1xk0
Fe
Title: crystal structures of the g139a, g139a-no and g143h mutants of human heme oxygenase-1
Author: l. lad, a. koshkin, p. r. de montellano, t. l. poulos
Keywords: heme degredation
- 1y2p.pdb.
toxin 23-nov-04 1y2p
(NMR, 20 structures)
Title: solution structure of hstx3p
Author: a. mosbah, l. gariga, h. darbon, j. m. sabatier
Keywords: hstx3p, potassium channel
- 1y2y.pdb.
biosynthetic protein 23-nov-04 1y2y
(NMR, 10 structures)
Title: structural characterization of nop10p using nuclear magnetic resonance spectroscopy
Author: m. m. khanna, h. wu, c. johannson, m. caizergues-ferrer, j. feigon
Keywords: snornp, pseudouridine
- 1y3u.pdb.
hydrolase 26-nov-04 1y3u
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, u. obst, a. heine, f. diederich, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y3v.pdb.
hydrolase 26-nov-04 1y3v
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y3w.pdb.
hydrolase 26-nov-04 1y3w
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y3x.pdb.
hydrolase 26-nov-04 1y3x
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet, beta hairpin, greek key motive
- 1y3y.pdb.
hydrolase 26-nov-04 1y3y
Ca
Title: trypsin inhibitor complex
Author: j. fokkens, g. klebe
Keywords: inhibitor complex, barrel, 6 stranded beta-sheet
- 1y49.pdb.
neuropeptide 30-nov-04 1y49
(NMR, 10 structures)
Title: solution structure of ccap (crustacean cardioactive peptide) from drosophila melanogaster
Author: k. nagata, m. tanokura
Keywords: disulfide bond
- 1ycw.pdb.
deoxyribonucleic acid 23-dec-04 1ycw
(NMR, 5 structures)
Title: clustered abasic lesions in dna: nmr solution structures of clustered bistranded-1 abasic lesion
Author: r. d. hazel, c. de los santos
Keywords: abasic sites, clustered damage, extruded residues, reduced ap site, furan, bistranded abasic lesion
- 1ynp.pdb.
oxidoreductase 25-jan-05 1ynp
Na
Title: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)
Author: t. marquardt, d. kostrewa, f. k. winkler, x. d. li
Keywords: akr11c1, nadph, bacillus halodurans
- 1ynq.pdb.
oxidoreductase 25-jan-05 1ynq
Na
Title: aldo-keto reductase akr11c1 from bacillus halodurans (holo form)
Author: t. marquardt, d. kostrewa, f. k. winkler, x. d. li
Keywords: akr11c1, nadph, bacillus halodurans
- 1ysy.pdb.
virus/viral protein 09-feb-05 1ysy
(NMR, 20 structures)
Title: nmr structure of the nonstructural protein 7 (nsp7) from the sars coronavirus
Author: w. peti, t. herrmann, m. a. johnson, p. kuhn, r. c. stevens, k. wuthrich, joint center for structural genomics (jcsg)
Keywords: structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 1z1y.pdb.
cell adhesion 07-mar-05 1z1y
Yb
Title: crystal structure of methylated pvs25, an ookinete protein from plasmodium vivax
Author: a. k. saxena, k. singh, h. p. su, m. m. klein, a. w. stowers, a. j. saul, c. a. long, d. n. garboczi
- 1z27.pdb.
cell adhesion 07-mar-05 1z27
Title: crystal structure of native pvs25, an ookinete protein from plasmodium vivax.
Author: a. k. saxena, k. singh, h. p. su, m. m. klein, a. w. stowers, a. j. saul, c. a. long, d. n. garboczi
- 1z2d.pdb.
oxidoreductase 08-mar-05 1z2d
(NMR, 20 structures)
Title: solution structure of bacillus subtilis arsc in reduced state
Author: c. jin, y. li
Keywords: arsenate reductase, solution structure, structural genomics
- 1z2e.pdb.
oxidoreductase 08-mar-05 1z2e
(NMR, 20 structures)
Title: solution structure of bacillus subtilis arsc in oxidized state
Author: c. jin, y. li
Keywords: arsenate reductase, solution structure, structural genomics
- 1z3g.pdb.
immune system/cell adhesion 12-mar-05 1z3g
Title: crystal structure of complex between pvs25 and fab fragment of malaria transmission blocking antibody 2a8
Author: a. k. saxena, k. singh, h. p. su, m. m. klein, a. w. stowers, a. j. saul, c. a. long, d. n. garboczi
Keywords: pvs25
- 1z91.pdb.
dna binding protein 31-mar-05 1z91
Title: x-ray crystal structure of apo-ohrrc15s in reduced form: marr family protein
Author: m. hong, m. fuangthong, j. d. helmann, r. g. brennan
Keywords: marr family, bacterial transcription factor
- 1zc0.pdb.
hydrolase 09-apr-05 1zc0
Title: crystal structure of human hematopoietic tyrosine phosphatase (heptp) catalytic domain
Author: r. page, t. mustelin
Keywords: human tyrosine phosphatase catalytic domain, lc-ptp, ptpn7
- 1zhc.pdb.
unknown function 25-apr-05 1zhc
(NMR, 20 structures)
Title: solution structure of hp1242 from helicobacter pylori
Author: s. j. kang, s. j. park, s. j. jung, b. j. lee
- 1znt.pdb.
antimicrobial protein 12-may-05 1znt
F
(NMR, 18 structures)
Title: 18 nmr structures of acamp2-like peptide with non natural fluoroaromatic residue (acamp2f18pff/y20pff) complex with n,n,n-triacetylchitotriose
Author: m. i. chavez, c. andreu, p. vidal, n. aboitiz, f. freire, p. groves, j. l. asensio, g. asensio, m. muraki, f. j. canada, j. jimenez-barbero
Keywords: anti-parallel beta-sheet
- 1zp5.pdb.
hydrolase 16-may-05 1zp5
Zn Ca
Title: crystal structure of the complex between mmp-8 and a n- hydroxyurea inhibitor
Author: c. campestre, m. agamennone, p. tortorella, s. preziuso, a. biasone, e. gavuzzo, g. pochetti, f. mazza, h. tschesche, c. gallina
- 1zpe.pdb.
hydrolase 16-may-05 1zpe
Mn
Title: arginase i covalently modified with butylamine at q19c
Author: d. m. colleluori, r. s. reczkowski, f. a. emig, e. cama, j. d. cox, l. r. scolnick, k. compher, k. jude, s. han, r. e. viola, d. w. christianson, d. e. ash
- 1zpg.pdb.
hydrolase 16-may-05 1zpg
Mn
Title: arginase i covalently modified with propylamine at q19c
Author: d. m. colleluori, r. s. reczkowski, f. a. emig, e. cama, j. d. cox, l. r. scolnick, k. compher, k. jude, s. han, r. e. viola, d. w. christianson, d. e. ash
- 1zpx.pdb.
structural protein 18-may-05 1zpx
(NMR, 10 structures)
Title: nmr structure of mcol1-[13-33] from hydra
Author: a. g. milbradt, c. boulegue, l. moroder, c. renner
- 1zrr.pdb.
oxidoreductase 19-may-05 1zrr
Ni
(NMR, 17 structures)
Title: residual dipolar coupling refinement of acireductone dioxygenase from klebsiella
Author: t. c. pochapsky, s. s. pochapsky, t. ju, c. hoefler, j. liang
Keywords: cupin, beta helix, methionine salvage
- 1zu2.pdb.
transport protein 30-may-05 1zu2
(NMR, 20 structures)
Title: solution nmr structure of the plant tom20 mitochondrial import receptor from arabidopsis thaliana
Author: a. j. perry, j. m. hulett, t. lithgow, p. r. gooley
Keywords: tetratricopeptide repeat like, tpr-like
- 1zuv.pdb.
antimicrobial protein 01-jun-05 1zuv
(NMR, 24 structures)
Title: 24 nmr structures of acamp2-like peptide with phenylalanine 18 mutated to tryptophan
Author: m. i. chavez, c. andreu, p. vidal, f. freire, n. aboitiz, p. groves, j. l. asensio, g. asensio, m. muraki, f. j. canada, j. jimenez-barbero
Keywords: anti-parallel beta-sheet
- 1zuw.pdb.
isomerase 01-jun-05 1zuw
Title: crystal structure of b.subtilis glutamate racemase (race) with d-glu
Author: s. n. ruzheinikov, m. a. taal, s. e. sedelnikova, p. j. baker, d. w. rice
- 1zwt.pdb.
cell adhesion 06-jun-05 1zwt
(NMR, 12 structures)
Title: structure of the globular head domain of the bundlin, bfpa, of the bundle-forming pilus of enteropathogenic e.coli
Author: s. ramboarina, p. j. fernandes, s. daniell, s. islam, g. frankel, f. booy, m. s. donnenberg, s. matthews
Keywords: beta-sandwich, one disulfide bond
- 1zwu.pdb.
antimicrobial protein 06-jun-05 1zwu
(NMR, 30 structures)
Title: 30 nmr structures of acamp2-like peptide with non natural beta-(2-naphthyl)-alanine residue.
Author: m. i. chavez, c. andreu, p. vidal, f. freire, n. aboitiz, p. groves, j. l. asensio, g. asensio, m. muraki, f. j. canada, j. jimenez-barbero
Keywords: anti-parallel beta-sheet.
- 1zye.pdb.
oxidoreductase 10-jun-05 1zye
Title: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii
Author: z. cao, a. w. roszak, l. j. gourlay, j. g. lindsay, n. w. isaacs
Keywords: dodecamer, peroxiredoxin
- 1zzq.pdb.
oxidoreductase 14-jun-05 1zzq
Zn Fe
Title: rat nnos d597n mutant with l-n(omega)-nitroarginine-(4r)- amino-l-proline amide bound
Author: h. li, m. l. flinspach, j. igarashi, j. jamal, w. yang, j. a. gomez- vidal, e. a. litzinger, r. b. silverman, t. l. poulos
- 1zzr.pdb.
oxidoreductase 14-jun-05 1zzr
F Zn Fe
Title: rat nnos d597n/m336v double mutant with l-n(omega)- nitroarginine-(4r)-amino-l-proline amide bound
Author: h. li, m. l. flinspach, j. igarashi, j. jamal, w. yang, j. a. gomez- vidal, e. a. litzinger, r. b. silverman, t. l. poulos
- 1zzs.pdb.
oxidoreductase 14-jun-05 1zzs
Zn Fe As
Title: bovine enos n368d single mutant with l-n(omega)- nitroarginine-(4r)-amino-l-proline amide bound
Author: h. li, m. l. flinspach, j. igarashi, j. jamal, w. yang, j. a. gomez- vidal, e. a. litzinger, r. b. silverman, t. l. poulos
- 1zzt.pdb.
oxidoreductase 14-jun-05 1zzt
Zn Fe As
Title: bovine enos n368d/v106m double mutant with l-n(omega)- nitroarginine-(4r)-amino-l-proline amide bound
Author: h. li, m. l. flinspach, j. igarashi, j. jamal, w. yang, j. a. gomez- vidal, e. a. litzinger, r. b. silverman, t. l. poulos
- 1zzu.pdb.
oxidoreductase 14-jun-05 1zzu
Zn Fe
Title: rat nnos d597n/m336v double mutant with l-n(omega)- nitroarginine-2,4-l-diaminobutyric amide bound
Author: h. li, m. l. flinspach, j. igarashi, j. jamal, w. yang, j. a. gomez- vidal, e. a. litzinger, r. b. silverman, t. l. poulos
Keywords: enzyme-inhibtor complex
- 2a2p.pdb.
oxidoreductase 22-jun-05 2a2p
(NMR, 20 structures)
Title: solution structure of selm from mus musculus
Author: a. d. ferguson, v. labunskyy, d. e. fomenko, d. arac, y. chelliah, c. a. amezcua, j. rizo, v. n. gladyshev, j. deisenhofer
Keywords: redox enzyme
- 2a5m.pdb.
structural protein 30-jun-05 2a5m
(NMR, 20 structures)
Title: nmr structure of murine gamma-s crystallin from joint refinement with saxs data
Author: a. grishaev, j. wu, j. trewhella, a. bax
Keywords: small-angle x-ray scattering, alignment, deuteration, liquid crystal, pf1, rdc, residual dipolar coupling, molecular fragment replacement, mfr
- 2a66.pdb.
transcription/dna 01-jul-05 2a66
Zn
Title: human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter
Author: i. h. solomon, j. m. hager, r. safi, d. p. mcdonnell, m. r. redinbo, e. a. ortlund
Keywords: protein-dna complex, zinc finger, dna- binding domain, transcription factor, ftz-f1, c-terminal extension
- 2aaz.pdb.
transferase 14-jul-05 2aaz
Title: cryptococcus neoformans thymidylate synthase complexed with substrate and an antifolate
Author: j. s. finer-moore, a. c. anderson, r. h. o'neil, m. p. costi, s. ferrari, j. krucinski, r. m. stroud
Keywords: nucleotide biosynthesis, transferase
- 2adf.pdb.
blood clotting/immune system 20-jul-05 2adf
Title: crystal structure and paratope determination of 82d6a3, an antithrombotic antibody directed against the von willebrand factor a3-domain
Author: s. staelens, m. a. hadders, s. vauterin, c. platteau, k. vanhoorelbeke, e. g. huizinga, h. deckmyn
Keywords: a3-domain, 82d6a3, collagen binding, paratope, epitope, crystal structure, antithrombotic
- 2aip.pdb.
hydrolase 30-jul-05 2aip
Title: crystal structure of native protein c activator from the venom of copperhead snake agkistrodon contortrix contortrix
Author: m. t. murakami, r. k. arni
Keywords: snake venom, trypsin-like enzyme
- 2aiq.pdb.
hydrolase 30-jul-05 2aiq
Cl
Title: crystal structure of benzamidine-inhibited protein c activator from the venom of copperhead snake agkistrodon contortrix contortrix
Author: m. t. murakami, r. k. arni
Keywords: snake venom serine proteinase
- 2akg.pdb.
deoxyribonucleic acid 03-aug-05 2akg
(NMR, 10 structures)
Title: thallium form of the g-quadruplex from oxytricha nova, d(g4t4g4)2
Author: m. l. gill, s. a. strobel, j. p. loria
Keywords: g-quadruplex, thallium
- 2akr.pdb.
immune system 03-aug-05 2akr
Title: structural basis of sulfatide presentation by mouse cd1d
Author: d. m. zajonc, r. halder, d. wu, i. maricic, k. roy, c. -h. wong, v. kumar, i. a. wilson
Keywords: cd1d, mhc fold, sulfatide, self-antigen, tcr
- 2apj.pdb.
structural genomics, unknown function 16-aug-05 2apj
Title: x-ray structure of protein from arabidopsis thaliana at4g34215 at 1.6 angstrom resolution
Author: g. e. wesenberg, g. n. phillips jr. , j. g. mccoy, e. bitto, c. a. bingman, s. t. allard, center for eukaryotic structural genomics (cesg)
Keywords: putative esterase,sgnh-hydrolase superfamily, carbohydrate esterase family 6, structural genomics, protein structure initiative, psi, cesg, center for eukaryotic structural genomics
- 2aq5.pdb.
structural protein 17-aug-05 2aq5
Title: crystal structure of murine coronin-1
Author: b. a. appleton, p. wu, c. wiesmann
Keywords: 7-bladed beta-propeller
- 2aqx.pdb.
transferase 18-aug-05 2aqx
Mg
Title: crystal structure of the catalytic and cam-binding domains of inositol 1,4,5-trisphosphate 3-kinase b
Author: p. p. chamberlain, m. l. sandberg, k. sauer, m. p. cooke, s. a. lesley, g. spraggon
Keywords: itpkb, ip3-3k, ip3-3kb, inositol, kinase, ip3, calmodulin binding
- 2ar7.pdb.
transferase 19-aug-05 2ar7
Title: crystal structure of human adenylate kinase 4, ak4
Author: p. filippakopoulos, a. p. turnbull, o. fedorov, j. weigel, g. bunkoczi, e. ugochukwu, j. debreczeni, f. niesen, f. von delft, a. edwards, c. arrowsmith, m. sundstrom, structural genomics consortium (sgc)
Keywords: nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, sgc
- 2as8.pdb.
hydrolase 23-aug-05 2as8
Mg
Title: crystal structure of mature and fully active der p 1 allergen
Author: s. de halleux, e. a. stura, l. vanderelst, v. carlier, m. jacquemin, j. -m. saint-remy
- 2asq.pdb.
protein binding 23-aug-05 2asq
(NMR, 10 structures)
Title: solution structure of sumo-1 in complex with a sumo-binding motif (sbm)
Author: j. song, z. zhang, w. hu, y. chen
Keywords: sumo-1, small ubiquitin-like modifier 1, sumo-binding motif, sbm, protein inhibitor of activated stat, piasx
- 2asy.pdb.
structural genomics, unknown function 24-aug-05 2asy
(NMR, 20 structures)
Title: solution structure of ydhr protein from escherichia coli
Author: m. revington, a. semesi, a. yee, g. s. shaw, structural genomics consortium (sgc)
Keywords: homodimer, structural genomics, structural genomics consortium, sgc
- 2aub.pdb.
hydrolase 27-aug-05 2aub
Title: lysozyme structure derived from thin-film-based crystals
Author: e. pechkova, v. sivozhelezov, g. tropiano, s. fiordoro, c. nicolini
- 2aw2.pdb.
immune system 31-aug-05 2aw2
Ni
Title: crystal structure of the human btla-hvem complex
Author: d. m. compaan, l. c. gonzalez, i. tom, k. m. loyet, d. eaton, s. g. hymowitz
Keywords: igg domain, tnfrsf, protein-protein complex
- 2aw6.pdb.
transcription 31-aug-05 2aw6
Title: structure of a bacterial peptide pheromone/receptor complex and its mechanism of gene regulation
Author: k. shi, c. k. brown, z. y. gu, b. k. kozlowicz, g. m. dunny, d. h. ohlendorf, c. a. earhart
Keywords: pheromone, dna binding, regulatory
- 2awi.pdb.
transcription 01-sep-05 2awi
Se
Title: structure of prgx y153c mutant
Author: k. shi, c. k. brown, z. y. gu, b. k. kozlowicz, g. m. dunny, d. h. ohlendorf, c. a. earhart
Keywords: pheromone, dna binding, regulatory domain
- 2axn.pdb.
transferase, hydrolase 05-sep-05 2axn
Title: crystal structure of the human inducible form 6- phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Author: s. g. kim, n. p. manes, r. el-maghrabi, y. h. lee
Keywords: edta complex
- 2axu.pdb.
transcription 06-sep-05 2axu
Se
Title: structure of prgx
Author: k. shi, c. k. brown, z. y. gu, b. k. kozlowicz, g. m. dunny, d. h. ohlendorf, c. a. earhart
Keywords: pheromone, dna binding, domain
- 2axv.pdb.
transcription 06-sep-05 2axv
Title: structure of prgx y153c mutant
Author: k. shi, c. k. brown, z. y. gu, b. k. kozlowicz, g. m. dunny, d. h. ohlendorf, c. a. earhart
Keywords: pheromone, dna binding, domain
- 2axz.pdb.
transcription 06-sep-05 2axz
Se
Title: crystal structure of prgx/ccf10 complex
Author: k. shi, c. k. brown, z. y. gu, b. k. kozlowicz, g. m. dunny, d. h. ohlendorf, c. a. earhart
Keywords: pheromone, dna binding, domain
- 2az5.pdb.
cytokine 09-sep-05 2az5
F
Title: crystal structure of tnf-alpha with a small molecule inhibitor
Author: m. m. he, j. d. oslob, a. s. smith, m. t. cancilla, j. wang, a. c. braisted, w. m. flanagan, a. d. fung, a. whitty, b. c. cunningham
- 2azr.pdb.
hydrolase 12-sep-05 2azr
Title: crystal structure of ptp1b with bicyclic thiophene inhibitor
Author: a. f. moretto, s. j. kirincich, w. x. xu, m. j. smith, z. k. wan, d. p. wilson, b. c. follows, e. binnun, d. joseph-mccarthy, k. foreman, d. v. erbe, y. l. zhang, s. k. tam, s. y. tam, j. lee
Keywords: hydrolyase, bicyclic thiophenes
- 2b07.pdb.
hydrolase 13-sep-05 2b07
Title: crystal structure of ptp1b with tricyclic thiophene inhibitor.
Author: a. f. moretto, s. j. kirincich, w. x. xu, m. j. smith, z. k. wan, d. p. wilson, b. c. follows, e. binnun, d. joseph-mccarthy, k. foreman, d. v. erbe, y. l. zhang, s. k. tam, s. y. tam, j. lee
Keywords: hydrolyase, tricyclic thiophenes
- 2b3e.pdb.
deoxyribonucleic acid 20-sep-05 2b3e
Mg
Title: crystal structure of db819-d(cgcgaattcgcg)2.
Author: s. neidle, m. p. lee
Keywords: magnesium-water complex, hydrated magnesium, dna hydration.
- 2b4e.pdb.
structural protein 23-sep-05 2b4e
Title: crystal structure of murine coronin-1: monoclinic form
Author: b. a. appleton, p. wu, c. wiesmann
Keywords: 7-bladed beta-propeller
- 2b5j.pdb.
transferase 28-sep-05 2b5j
I Mn
Title: crystal structure of hiv-1 reverse transcriptase (rt) in complex with janssen-r165481
Author: d. h. himmel, k. das, a. d. clark jr. , s. h. hughes, a. benjahad, s. oumouch, j. guillemont, s. coupa, a. poncelet, i. csoka, c. meyer, k. andries, c. h. mguyen, d. s. grierson, e. arnold
Keywords: hiv, drug design, reverse transcriptase, rt, protein- inhibitor complex
- 2b63.pdb.
transferase/rna 30-sep-05 2b63
Mg Zn Br
Title: complete rna polymerase ii-rna inhibitor complex
Author: h. kettenberger, a. eisenfuehr, f. brueckner, m. theis, m. famulok, p. cramer
Keywords: rna, aptamer, protein-rna complex, inhibitor
- 2b6o.pdb.
membrane protein 03-oct-05 2b6o
(electron diffraction)
Title: electron crystallographic structure of lens aquaporin-0 (aqp0) (lens mip) at 1.9a resolution, in a closed pore state
Author: t. gonen, y. cheng, p. sliz, y. hiroaki, y. fujiyoshi, s. c. harrison, t. walz
Keywords: aqp0, lens mip, lipid-protein interactions, membrane, lipid bilayer, closed water pore, electron crystallography,
- 2b6p.pdb.
membrane protein 03-oct-05 2b6p
Title: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore state
Author: t. gonen, y. cheng, p. sliz, y. hiroaki, y. fujiyoshi, s. c. harrison, t. walz
- 2b7f.pdb.
hydrolase 04-oct-05 2b7f
Title: crystal structure of human t-cell leukemia virus protease, a novel target for anti-cancer design
Author: m. li, g. laco, m. jaskoiski, j. rozycki, j. alexandratos, a. wlodawer, a. gustchina
- 2b8a.pdb.
hormone/growth factor 06-oct-05 2b8a
(NMR, 26 structures)
Title: high resolution structure of the hdgf pwwp domain
Author: s. m. lukasik, t. cierpicki, m. borloz, j. grembecka, a. everett, j. h. bushweller
Keywords: hdgf
- 2b8v.pdb.
hydrolase 10-oct-05 2b8v
Title: crystal structure of human beta-secretase complexed with l- l000430,469
Author: s. munshi, l. kuo
Keywords: bace
- 2baj.pdb.
transferase 14-oct-05 2baj
Cl
Title: p38alpha bound to pyrazolourea
Author: s. gerhardt, r. a. pauptit, j. read, j. breed, r. a. norman, w. ward
- 2bak.pdb.
transferase 14-oct-05 2bak
Title: p38alpha map kinase bound to mpaq
Author: s. gerhardt, j. breed, r. a. pauptit, j. read, r. a. norman, w. ward
Keywords: serine/threonine kinase
- 2bal.pdb.
transferase 14-oct-05 2bal
F
Title: p38alpha map kinase bound to pyrazoloamine
Author: s. gerhardt, r. a. pauptit, j. read, j. tucker, r. a. norman, j. breed
Keywords: map kinase, serine/threonine kinase
- 2ban.pdb.
transferase 14-oct-05 2ban
Mn
Title: crystal structure of hiv-1 reverse transcriptase (rt) in complex with janssen-r157208
Author: k. das, e. arnold
Keywords: hiv, drug design, reverse transcriptase, rt, protein- inhibitor complex
- 2baq.pdb.
transferase 14-oct-05 2baq
F
Title: p38alpha bound to ro3201195
Author: s. gerhardt, r. a. pauptit, j. breed, j. read, j. tucker, r. a. norman
Keywords: map kinase, serine/threonine kinase
- 2bb3.pdb.
transferase 17-oct-05 2bb3
Se
Title: crystal structure of cobalamin biosynthesis precorrin-6y methylase (cbie) from archaeoglobus fulgidus
Author: y. kim, a. joachimiak, x. xu, a. savchenko, a. edwards, midwest center for structural genomics (mcsg)
Keywords: alpha-beta-alpha sandwich, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2bbd.pdb.
virus/viral protein 17-oct-05 2bbd
Se
Title: crystal structure of the stiv mcp
Author: r. khayat
Keywords: hyperthermophile, virus, evolution, crystal
- 2bbw.pdb.
transferase 17-oct-05 2bbw
Title: crystal structure of human adenylate kinase 4 (ak4) in complex with diguanosine pentaphosphate
Author: p. filippakopoulos, a. p. turnbull, o. fedorov, j. weigel, g. bunkoczi, e. ugochukwu, j. debreczeni, f. niesen, f. von delft, a. edwards, c. arrowsmith, m. sundstrom, s. knapp, structural genomics consortium (sgc)
Keywords: nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, sgc
- 2bde.pdb.
dna binding protein 20-oct-05 2bde
Se
Title: crystal structure of the cytosolic imp-gmp specific 5'- nucleotidase (lpg0095) from legionella pneumophila, northeast structural genomics target lgr1
Author: f. forouhar, m. abashidze, c. k. ho, k. conover, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2be2.pdb.
transferase 21-oct-05 2be2
I Mn
Title: crystal structure of hiv-1 reverse transcriptase (rt) in complex with r221239
Author: d. m. himmel, k. das, a. d. clark jr. , s. h. hughes, a. benjahad, s. oumouch, j. guillemont, s. coupa, a. poncelet, i. csoka, c. meyer, k. andries, c. h. nguyen, d. s. grierson, e. arnold
Keywords: hiv, drug design, reverse transcriptase, rt, protein- inhibitor complex, drug resistance
- 2be3.pdb.
transferase 21-oct-05 2be3
Cl Se
Title: structure of a gtp pyrophosphokinase family protein from streptococcus pneumoniae
Author: m. e. cuff, c. hatzos, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: streptococcus pneumoniae, pyrophosphokinase, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2bfw.pdb.
transferase 14-dec-04 2bfw
Title: structure of the c domain of glycogen synthase from pyrococcus abyssi
Author: c. horcajada, j. j. guinovart, i. fita, j. c. ferrer
Keywords: transferase
- 2bhi.pdb.
cardiotoxin 12-jan-05 2bhi
Title: crystal structure of taiwan cobra cardiotoxin a3 complexed with sulfogalactoceramide
Author: c. -h. wang, j. -h. liu, p. -l. wu, s. -c. lee, c. -d. hsiao, w. -g. wu
Keywords: sulfogalactoceramide sulfatide, glycosphingolipid, membrane pore formation, cytolysis
- 2bis.pdb.
transferase 18-jan-05 2bis
Title: structure of glycogen synthase from pyrococcus abyssi
Author: c. horcajada, j. j. guinovart, i. fita, j. c. ferrer
Keywords: 5 udp/adp-glucose-glycogen synthase, two rossman folds, transferase
- 2bp3.pdb.
cytoskeleton/complex 15-apr-05 2bp3
Title: crystal structure of filamin a domain 17 and gpib alpha cytoplasmic domain complex
Author: r. pudas, j. ylanne
Keywords: cytoskeleton, complex
- 2bwk.pdb.
hydrolase 15-jul-05 2bwk
Title: murine angiogenin, sulphate complex
Author: d. e. holloway, g. b. chavali, m. c. hares, v. subramanian, k. r. acharya
Keywords: angiogenesis,cancer, hydrolase
- 2bwl.pdb.
hydrolase 15-jul-05 2bwl
Title: murine angiogenin, phosphate complex
Author: d. e. holloway, g. b. chavali, m. c. hares, v. subramanian, k. r. acharya
Keywords: angiogenesis,cancer,hydrolase
- 2bx9.pdb.
transcription regulation 19-jul-05 2bx9
Zn
Title: crystal structure of b.subtilis anti-trap protein, an antagonist of trap-rna interactions
Author: m. b. shevtsov, y. chen, p. gollnick, a. a. antson
Keywords: at, trap, trp rna-binding attenuation protein, transcription regulation
- 2bzs.pdb.
oxidoreductase 26-jul-05 2bzs
Zn
Title: binding of anti-cancer prodrug cb1954 to the activating enzyme nqo2 revealed by the crystal structure of their complex.
Author: m. m. abu khader, j. t. heap, c. de matteis, b. kellam, s. w. doughty, n. minton, m. paoli
Keywords: cb1954, fad, flavoprotein, metal-binding, oxidoreductase, polymorphism, zinc
- 2c1h.pdb.
lyase 06-sep-05 2c1h
Mg
Title: the x-ray structure of chlorobium vibrioforme 5- aminolaevulinic acid dehydratase complexed with a diacid inhibitor
Author: l. coates, g. beaven, p. t. erskine, s. beale, s. p. wood, p. m. shoolingin-jordan, j. b. cooper
Keywords: 5-aminolaevulinic acid dehydratase, heme biosynthesis, lyase, magnesium, porphyrin biosynthesis
- 2c22.pdb.
polymerase 25-sep-05 2c22
Ca
Title: efficient and high fidelity incorporation of dctp opposite 7,8-dihydro-8-oxodeoxyguanosine by sulfolobus solfataricus dna polymerase dpo4
Author: a. irimia, l. v. loukachevitch, m. egli
Keywords: metal -binding, mutator protein
- 2c27.pdb.
synthase 26-sep-05 2c27
Title: the structure of mycothiol synthase in complex with des- acetylmycothiol and coenzymea.
Author: m. w. vetting, m. yu, p. m. rendle, j. s. blanchard
Keywords: mycothiol synthase, des- acetylmycothiol, acetyltransferase, gnat, gcn5 related n- acetyltransferase
- 2c28.pdb.
polymerase 26-sep-05 2c28
Ca
Title: efficient and high fidelity incorporation of dctp opposite 7,8-dihydro-8-oxodeoxyguanosine by sulfolobus solfataricus dna polymerase dpo4
Author: a. irimia, l. v. loukachevitch, m. egli
Keywords: dna-directed dna polymerase, magnesium, metal- binding, mutator protein
- 2c2b.pdb.
synthase 27-sep-05 2c2b
Title: crystallographic structure of arabidopsis thaliana threonine synthase complexed with pyridoxal phosphate and s-adenosylmethionine
Author: c. mas-droux, v. biou, r. dumas
Keywords: allostery, pyridoxal phosphate, s- adenosylmethionine, synthase
- 2c2d.pdb.
polymerase 27-sep-05 2c2d
Ca
Title: efficient and high fidelity incorporation of dctp opposite 7,8-dihydro-8-oxodeoxyguanosine by sulfolobus solfataricus dna polymerase dpo4
Author: a. irimia, l. v. loukachevitch, m. egli
Keywords: metal-binding, mutator protein, magnesium
- 2c2e.pdb.
polymerase 27-sep-05 2c2e
Ca
Title: efficient and high fidelity incorporation of dctp opposite 7,8-dihydro-8-oxodeoxyguanosine by sulfolobus solfataricus dna polymerase dpo4
Author: a. irimia, l. v. loukachevitch, m. egli
Keywords: metal-binding, mutator protein
- 2c2g.pdb.
synthase 29-sep-05 2c2g
Title: crystal structure of threonine synthase from arabidopsis thaliana in complex with its cofactor pyridoxal phosphate
Author: c. mas-droux, v. biou, r. dumas
Keywords: threonine biosynthesis, pyridoxal phosphate, amino-acid biosynthesis chloroplast, plastid, transit peptide, synthase
- 2c2r.pdb.
polymerase 29-sep-05 2c2r
Ca
Title: efficient and high fidelity incorporation of dctp opposite 7,8-dihydro-8-oxodeoxyguanosine by sulfolobus solfataricus dna polymerase dpo4
Author: a. irimia, l. v. loukachevitch, m. egli
Keywords: metal-binding, mutator protein
- 2c3f.pdb.
lyase 05-oct-05 2c3f
Na
Title: the structure of a group a streptococcal phage-encoded tail-fibre showing hyaluronan lyase activity.
Author: e. j. taylor, n. l. smith, a. linsay, s. j. charnock, j. p. turkenburg, e. j. dodson, g. j. davies, g. w. black
Keywords: phage tail fibre, triple-stranded beta- helix, hyaluronidase, scarlet fever
- 2c3n.pdb.
transferase 11-oct-05 2c3n
I
Title: human glutathione-s-transferase t1-1, apo form
Author: k. tars, a. -k. larsson, a. shokeer, b. olin, b. mannervik, g. j. kleywegt
Keywords: glutathione transferase, t1-1, polymorphism, transferase
- 2c3q.pdb.
transferase 11-oct-05 2c3q
I
Title: human glutathione-s-transferase t1-1 w234r mutant, complex with s-hexylglutathione
Author: k. tars, a. -k. larsson, a. shokeer, b. olin, b. mannervik, g. j. kleywegt
Keywords: glutathione transferase, t1-1, polymorphism, transferase
- 2c3t.pdb.
transferase 12-oct-05 2c3t
Title: human glutathione-s-transferase t1-1, w234r mutant, apo form
Author: k. tars, a. -k. larsson, a. shokeer, b. olin, b. mannervik, g. j. kleywegt
Keywords: glutathione transferase, t1-1, polymorphism, transferase
- 2c53.pdb.
hydrolase 25-oct-05 2c53
Title: a comparative study of uracil dna glycosylases from human and herpes simplex virus type 1
Author: k. krusong, l. carpenter, s. r. w, bellamy, r. savva, g. s. baldwin
Keywords: dna repair, dna damage, glycosidase, hydrolase
- 2c56.pdb.
hydrolase 26-oct-05 2c56
Title: a comparative study of uracil dna glycosylases from human and herpes simplex virus type 1
Author: k. krusong, l. carpenter, s. r. w, bellamy, r. savva, g. s. baldwin
Keywords: dna repair, dna damage, glycosidase, hydrolase
- 2c5s.pdb.
rna-binding protein 01-nov-05 2c5s
Title: crystal structure of bacillus anthracis thii, a trna- modifying enzyme containing the predicted rna-binding thump domain
Author: d. g. waterman, m. ortiz-lombardia, m. j. fogg, e. v. koonin, a. a. antson
Keywords: trna modification, 4-thiouridine synthase, ferredoxin-like domain, thump domain, pp-loop pyrophosphatase domain, thiamine biosynthesis
- 2c60.pdb.
transferase 04-nov-05 2c60
Ca Se
Title: crystal structure of human mitogen-activated protein kinase kinase kinase 3 isoform 2 phox domain at 1.25 a resolution
Author: j. e. debreczeni, e. salah, e. papagrigoriou, n. burgess, f. von delft, o. gileadi, m. sundstrom, a. edwards, c. arrowsmith, j. weigelt, s. knapp
Keywords: transferase
- 2c6q.pdb.
oxidoreductase 11-nov-05 2c6q
Title: crystal structure of human guanosine monophosphate reductase 2 gmpr2 in complex with imp and nadph
Author: p. kursula, p. stenmark, c. arrowsmith, h. berglund, a. edwards, m. ehn, s. graslund, m. hammarstrom, b. m. hallberg, t. kotenyova, p. nilsson-ehle, d. ogg, c. persson, j. sagemark, h. schuler, m. sundstrom, a. thorsell, j. weigelt, p. nordlund
Keywords: metal-binding, nadp, oxidoreductase, potassium
- 2c74.pdb.
signaling protein/peptide complex 17-nov-05 2c74
Title: 14-3-3 protein eta (human) complexed to peptide
Author: j. m. elkins, x. yang, c. e. a. smee, c. johansson, m. sundstrom, a. edwards, j. weigelt, c. arrowsmith, d. a. doyle
Keywords: phosphoserine, phosphorylation, acetylation
- 2c7b.pdb.
hydrolase 21-nov-05 2c7b
Se
Title: the crystal structure of este1, a new thermophilic and thermostable carboxylesterase cloned from a metagenomic library
Author: j. -s. byun, j. -k. rhee, d. -u. kim, j. -w. oh, h. -s. cho
Keywords: thermophilic enzyme, hydrolase, hsl, alpha/beta hydrolase fold
- 2cog.pdb.
transferase 17-may-05 2cog
Mg
Title: crystal structure of oxidized human cytosolic branched- chain aminotransferase complexed with 4-methylvalerate
Author: m. goto
- 2coi.pdb.
transferase 17-may-05 2coi
Mg
Title: crystal structure of oxidized human cytosolic branched- chain aminotransferase complexed with gabapentin
Author: m. goto
- 2coj.pdb.
transferase 17-may-05 2coj
Mg
Title: crystal structure of reduced human cytosolic branched-chain aminotransferase complexed with gabapentin
Author: m. goto
- 2cuw.pdb.
structural genomics, unknown function 30-may-05 2cuw
Se
Title: crystal structure of thermus thermophilus purs, one of the subunits of formylglycinamide ribonucleotide amidotransferase in the purine biosynthetic pathway
Author: h. yanai, m. kanagawa, g. sampei, g. kawai, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cv8.pdb.
hydrolase 01-jun-05 2cv8
Cl Se
Title: crystal structure of trna-intron endonuclease from sulfolobus tokodaii
Author: m. kato-murayama, y. bessho, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: trna splicing, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2cv9.pdb.
structural genomics, unknown function 01-jun-05 2cv9
Se
Title: crystal structure of a hypothetical protein from thermus thermophilus hb8
Author: m. kanagawa, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2cvb.pdb.
structural genomics, unknown function 01-jun-05 2cvb
Se
Title: crystal structure of a thioredoxin-like protein from thermus thermophilus hb8
Author: a. ebihara, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: redox protein, structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2cve.pdb.
structural genomics, unknown function 02-jun-05 2cve
Title: crystal structure of a conserved hypothetical protein tt1547 from thermus thermophilus hb8
Author: h. iino, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: upf0029, structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2cvj.pdb.
oxidoreductase 04-jun-05 2cvj
Se
Title: crystal structure of thioredoxin reductase-related protein ttha0370 from thermus thermophilus hb8
Author: a. kashihara, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2cvk.pdb.
electron transport 04-jun-05 2cvk
Se
Title: crystal structure of thermus thermophilus thioredoxin
Author: h. yanai, s. yokoyama, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, riken structural genomics/proteomics initiative, rsgi
- 2cvo.pdb.
oxidoreductase 10-jun-05 2cvo
Title: crystal structure of putative n-acetyl-gamma-glutamyl- phosphate reductase (ak071544) from rice (oryza sativa)
Author: t. nonaka, a. kita, j. miura-ohnuma, e. katoh, n. inagaki, t. yamazaki, k. miki
- 2cw6.pdb.
lyase 17-jun-05 2cw6
Mg
Title: crystal structure of human hmg-coa lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria
Author: z. fu, j. a. runquist, j. f. hunt, h. m. miziorko, j. -j. p. kim
Keywords: ketogenic enzyme
- 2cy7.pdb.
hydrolase 05-jul-05 2cy7
Title: the crystal structure of human atg4b
Author: k. sugawara, n. n. suzuki, y. fujioka, n. mizushima, y. ohsumi, f. inagaki
Keywords: autophagy
- 2d00.pdb.
hydrolase 21-jul-05 2d00
Ca
Title: subunit f of v-type atpase/synthase
Author: h. makyio, r. iino, c. ikeda, h. imamura, m. tamakoshi, m. iwata, d. stock, r. a. bernal, e. p. carpenter, m. yoshida, k. yokoyama, s. iwata
Keywords: subunit f, chey, fret
- 2d05.pdb.
hydrolase 25-jul-05 2d05
Title: chitosanase from bacillus circulans mutant k218p
Author: t. fukamizo, s. amano, k. yamaguchi, t. yoshikawa, t. katsumi, j. saito, m. suzuki, k. miki, y. nagata, a. ando
Keywords: chitosan degradation
- 2d3o.pdb.
ribosome 30-sep-05 2d3o
Title: structure of ribosome binding domain of the trigger factor on the 50s ribosomal subunit from d. radiodurans
Author: f. schluenzen, d. n. wilson, h. a. hansen, p. tian, j. m. harms, s. j. mcinnes, r. albrecht, j. buerger, s. m. wilbanks, p. fucini
Keywords: trigger factor, nascent chain, 50s, protein folding, srp
- 2esh.pdb.
structural genomics, unknown function 26-oct-05 2esh
Ca
Title: crystal structure of conserved hypothetical protein tm0937
Author: y. liu, e. bochkareva, h. zheng, x. xu, b. przemyslaw, v. lunin, a. edward, e. f. pai, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: apc5794, x-ray, crystal structure, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 2esk.pdb.
ligase 26-oct-05 2esk
Title: human ubiquitin-conjugating enzyme (e2) ubch5b, wild-type
Author: e. ozkan, h. yu, j. deisenhofer
- 2eso.pdb.
ligase 26-oct-05 2eso
Title: human ubiquitin-conjugating enzyme (e2) ubch5b mutant ile37ala
Author: e. ozkan, h. yu, j. deisenhofer
- 2esp.pdb.
ligase 26-oct-05 2esp
Cl
Title: human ubiquitin-conjugating enzyme (e2) ubch5b mutant ile88ala
Author: e. ozkan, h. yu, j. deisenhofer
- 2esq.pdb.
ligase 26-oct-05 2esq
Title: human ubiquitin-conjugating enzyme (e2) ubch5b mutant ser94gly
Author: e. ozkan, h. yu, j. deisenhofer
- 2etf.pdb.
hydrolase 27-oct-05 2etf
Zn
Title: crystal structure of full length botulinum neurotoxin (type b) light chain
Author: s. swaminathan, s. eswaramoorthy
Keywords: zinc, metalloprotease, catalytic, neurotoxin
- 2eui.pdb.
structural genomics, unknown function 28-oct-05 2eui
Se
Title: crystal structure of a probable acetyltransferase
Author: s. swaminathan, s. eswaramoorthy, new york structural genomics research consortium (nysgrc)
Keywords: dimer, t1065, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2evu.pdb.
membrane protein 31-oct-05 2evu
Title: crystal structure of aquaporin aqpm at 2.3a resolution
Author: j. k. lee, d. kozono, j. remis, y. kitagawa, p. agre, r. m. stroud
- 2ew0.pdb.
structural genomics, unknown function 01-nov-05 2ew0
Se
Title: novel x-ray structure of hypothetical protein q6ff54 at the resolution 1.4 a. northeast structural genomics target asr1.
Author: a. p. kuzin, m. abahidze, s. m. voribiev, f. forouhar, t. acton, r. xiao, northeast structural genomics consortium (nesg)
Keywords: asr1, x-ray, nesg, structural genomics, psi, protein structure initiative, northeast structural genomics consortium
- 2ewo.pdb.
hydrolase 04-nov-05 2ewo
Se
Title: x-ray structure of putative agmatine deiminase q8dw17, northeast structural genomics target smr6.
Author: a. p. kuzin, l. tong, northeast structural genomics consortium (nesg)
Keywords: smr6, x-ray, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2ewr.pdb.
structural genomics, unknown function 05-nov-05 2ewr
Se
Title: crystal structure of hypothetical protein (tm1012) from thermotoga maritima at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: hypothetical protein, structural genomics, psi, protein structure initiative, joint center for structural genomics, jcsg
- 2f1r.pdb.
biosynthetic protein 15-nov-05 2f1r
Cl Pr
Title: crystal structure of molybdopterin-guanine biosynthesis protein b (mobb)
Author: l. damodharan, s. eswaramoorthy, d. kumaran, s. swaminathan, new york structural genomics research consortium (nysgrc)
Keywords: structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2f2b.pdb.
membrane protein 15-nov-05 2f2b
Title: crystal structure of integral membrane protein aquaporin aqpm at 1.68a resolution
Author: j. k. lee, d. kozono, j. remis, y. kitagawa, p. agre, r. m. stroud
Keywords: integral membrane protein, channel
- 2f2t.pdb.
transferase 17-nov-05 2f2t
Se
Title: crystal structure of nucleoside 2-deoxyribosyltransferase from trypanosoma brucei at 1.7 a resolution with 5- aminoisoquinoline bound
Author: j. bosch, m. a. robien, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, psi, protein structure initiative ndrt, nucleoside 2-deoxyribosyltransferase, trypanosoma brucei, structural genomics of pathogenic protozoa consortium
- 2f4l.pdb.
structural genomics, unknown function 23-nov-05 2f4l
Cl Zn Se
Title: crystal structure of acetamidase, putative (tm0119) from thermotoga maritima at 2.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: acetamidase, putative, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi
- 2f4n.pdb.
structural genomics, unknown function 23-nov-05 2f4n
Se
Title: crystal structure of a conserved hypothetical protein mj1651 from methanococcus jannaschii dsm 2661
Author: k. n. rao, s. swaminathan, new york structural genomics research consortium (nysgrc)
Keywords: mehtanococcus jannaschii, structural genomics, psi, protein structure initiative, new york structural genomics research consortium, nysgrc
- 2f55.pdb.
hydrolase/dna 25-nov-05 2f55
Title: two hepatitis c virus ns3 helicase domains complexed with the same strand of dna
Author: j. z. lu, j. b. jordan, j. sakon
- 2f5i.pdb.
transferase 25-nov-05 2f5i
Title: x-ray structure of spermidine/spermine n1-acetyltransferase (sat) from homo sapiens
Author: y. q. zhu, d. y. zhu, c. vonrhein, d. c. wang
- 2f62.pdb.
transferase 28-nov-05 2f62
Se
Title: crystal structure of nucleoside 2-deoxyribosyltransferase from trypanosoma brucei at 1.5 a resolution with (2- ethylphenyl)methanol bound
Author: j. bosch, m. a. robien, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, psi, protein structure initiative ndrt, nucleoside 2-deoxyribosyltransferase, trypanosoma brucei, structural genomics of pathogenic protozoa consortium
- 2f64.pdb.
transferase 28-nov-05 2f64
Se
Title: crystal structure of nucleoside 2-deoxyribosyltransferase from trypanosoma brucei at 1.6 a resolution with 1- methylquinolin-2(1h)-one bound
Author: j. bosch, m. a. robien, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, psi, protein structure initiative ndrt, nucleoside 2-deoxyribosyltransferase, trypanosoma brucei, structural genomics of pathogenic protozoa consortium
- 2f67.pdb.
transferase 28-nov-05 2f67
Se
Title: crystal structure of nucleoside 2-deoxyribosyltransferase from trypanosoma brucei at 1.6 a resolution with benzo[cd]indol-2(1h)-one bound
Author: j. bosch, m. a. robien, w. g. j. hol, structural genomics of pathogenic protozoa consortium (sgpp)
Keywords: structural genomics, psi, protein structure initiative ndrt, nucleoside 2-deoxyribosyltransferase, trypanosoma brucei, structural genomics of pathogenic protozoa consortium
- 2f6f.pdb.
hydrolase 29-nov-05 2f6f
Cl Mg
Title: the structure of the s295f mutant of human ptp1b
Author: j. montalibet, k. skorey, d. mckay, g. scapin, e. asante-appiah, b. p. kennedy
Keywords: ligand binding, mutations
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS