Recent PDB releases or updates: week of 8 August 2001

• 1hb0.pdb. hydrolase 10-apr-01 1hb0 Ca
  Title: snapshots of serine protease catalysis: (d) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to ph 10 for 2 minutes
  Author: r. c. wilmouth, k. edman, r. neutze, p. a. wright, i. j. clifton, t. r. schneider, c. j. schofield, j. hajdu
  Keywords: hydrolase (serine proteinase)
  
• 1hx0.pdb. hydrolase 11-jan-01 1hx0 Cl Ca
  Title: structure of pig pancreatic alpha-amylase complexed with the "truncate" acarbose molecule (pseudotrisaccharide)
  Author: m. qian, f. payan
  Keywords: inhibitor, carbohydrate, pancreas
  
• 1hz0.pdb. deoxyribonucleic acid 23-jan-01 1hz0 (NMR, 6 structures)
  Title: nmr structure of the 2-amino-1-methyl-6-phenylimidazo[4,5- b]pyridine (phip) c8-deoxyguanosine adduct in duplex dna
  Author: k. brown, m. cosman
  
  
• 1h70.pdb. hydrolase 30-jun-01 1h70
  Title: ddah from pseudomonas aeruginosa. c249s mutant complexed with citrulline
  Author: j. murray-rust, j. leiper, m. mcalister, j. phelan, s. tilley, j. santamaria, p. vallance, n. mcdonald
  Keywords: ddah, nitric oxide synthase inhibitor
  
• 1ij0.pdb. transcription 24-apr-01 1ij0 Zn
  Title: coiled coil trimer gcn4-pvls ser at buried d position
  Author: d. l. akey, v. n. malashkevich, p. s. kim
  
  
• 1gjp.pdb. dehydratase 01_aug-01 1gjp Zn
  Title: schiff-base complex of yeast 5-aminolaevulinic acid dehydratase with 4-oxosebacic acid
  Author: p. t. erskine, l. coates, r. newbold, a. a. brindley, s. p. wood, m. j. warren, j. b. cooper, p. m. shoolingin-jordan, r. neier
  Keywords: dehydratase, aldolase, tim barrel, tetrapyrrole synthesis
  
• 1gcp.pdb. signaling protein 08-aug-00 1gcp
  Title: crystal structure of vav sh3 domain
  Author: m. nishida, k. nagata, y. hachimori, k. ogura, f. inagaki
  Keywords: vav
  
• 1g8p.pdb. photosynthesis, metal transport 20-nov-00 1g8p
  Title: crystal structure of bchi subunit of magnesium chelatase
  Author: m. n. fodje, a. hansson, m. hansson, j. g. olsen, s. gough, r. d. willows, s. al-karadaghi
  Keywords: p-loop, rossman fold, aaa+
  
• 1ij1.pdb. transcription 24-apr-01 1ij1 Zn
  Title: gcn4-pvlt coiled-coil trimer with threonine at the d(12) position
  Author: d. l. akey, v. n. malashkevich, p. s. kim
  Keywords: coiled coil
  
• 1jjq.pdb. hormone/growth factor 09-jul-01 1jjq (NMR, 13 structures)
  Title: solution structure of bradykinin-penta-o-galloyl-d- glucopyranose complex determined by nmr
  Author: s. verge, t. richard, s. moreau, j. vercauteren, j. p. monti
  
  
• 1jb1.pdb. transferase/hydrolase 01-jun-01 1jb1 Se
  Title: lactobacillus casei hprk/p bound to phosphate
  Author: s. fieulaine, s. morera, s. poncet, v. monedero, v. gueguen-chaignon, a. galinier, j. janin, j. deutscher, s. nessler
  Keywords: hpr phosphorylation, lactobacillus casei, p-loop, protein kinase, hexamer
  
• 1ehq.pdb. hydrolase 22-feb-00 1ehq (theoretical model)
  Title: model of (+)-cocaine-bound bche complex
  Author: h. sun, j. el yazal, w. s. brimijoin, y. p. pang
  
  
• 1gcq.pdb. signaling protein/signaling protein 08-aug-00 1gcq
  Title: crystal structure of vav and grb2 sh3 domains
  Author: m. nishida, k. nagata, y. hachimori, k. ogura, f. inagaki
  Keywords: protein-protein complex, grb2,vav
  
• 1g7a.pdb. hormone/growth factor 09-nov-00 1g7a Cl Zn
  Title: 1.2 a structure of t3r3 human insulin at 100 k
  Author: g. d. smith, w. a. pangborn, r. h. blessing
  
  
• 1im2.pdb. chaperone 09-may-01 1im2 Se
  Title: hslu, haemophilus influenzae, selenomethionine variant
  Author: c. b. trame, d. b. mckay
  Keywords: aaa family
  
• 1ij2.pdb. transcription 24-apr-01 1ij2 Cd
  Title: gcn4-pvtl coiled-coil trimer with threonine at the a(16) position
  Author: d. l. akey, v. n. malashkevich, p. s. kim
  
  
• 1g7b.pdb. hormone/growth factor 09-nov-00 1g7b Cl Zn
  Title: 1.3 a structure of t3r3 human insulin at 100 k
  Author: g. d. smith, w. a. pangborn, r. h. blessing
  
  
• 1h8s.pdb. anti-ampicillin antibodies 15-feb-01 1h8s
  Title: three-dimensional structure of anti-ampicillin single chain fv fragment complexed with the hapten.
  Author: j. burmester, s. spinelli, l. pugliese, a. krebber, a. honegger, s. jung, b. schimmele, c. cambillau, a. pluckthun
  
  
• 1ij3.pdb. transcription 24-apr-01 1ij3
  Title: gcn4-pvsl coiled-coil trimer with serine at the a(16) position
  Author: d. l. akey, v. n. malashkevich, p. s. kim
  
  
• 1i83.pdb. oxidoreductase 12-mar-01 1i83 Zn Fe As
  Title: bovine endothelial nitric oxide synthase heme domain complexed with n1,n14-bis((s-methyl)isothioureido) tetradecane (h4b free)
  Author: c. s. raman, h. li, p. martasek, b. r. babu, o. w. griffith, b. s. s. masters, t. l. poulos
  Keywords: oxidoreductase
  
• 1jn3.pdb. transferase 22-jul-01 1jn3
  Title: fidelity properties and structure of m282l mutator mutant of dna polymerase: subtle structural changes influence the mechanism of nucleotide discrimination
  Author: d. a. conn, j. b. sweasy, j. jaeger
  Keywords: mutant, nucleotide discrimination
  
• 1jo3.pdb. antibiotic 26-jul-01 1jo3 (NMR, minimized average structure)
  Title: gramicidin b in sodium dodecyl sulfate micelles (nmr)
  Author: l. e. townsley, w. a. tucker, j. f. hinton
  Keywords: right handed, beta-6.3 helix, linear gramicidin, peptide antibiotic, membrane ion channel, sds micelles
  
• 1jb3.pdb. cell adhesion 01-jun-01 1jb3
  Title: the laminin-binding domain of agrin is structurally related to n-timp-1
  Author: j. stetefeld
  Keywords: agrin, interaction coiled-doil proteins with globular proteins, ob-fold, timp
  
• 1eb3.pdb. dehydratase 18-jul-01 1eb3 Zn
  Title: yeast 5-aminolaevulinic acid dehydratase 4,7-dioxosebacic acid complex
  Author: p. t. erskine, l. coates, r. newbold, a. a. brindley, f. stauffer, s. p. wood, m. j. warren, j. b. cooper, p. m. shoolingin-jordan, r. neier
  Keywords: aldolase, tim barrel, tetrapyrrole synthesis
  
• 1f1c.pdb. electron transport 18-may-00 1f1c Fe
  Title: crystal structure of cytochrome c549
  Author: c. a. kerfeld, m. r. sawaya, t. o. yeates, d. w. krogmann
  
  
• 1in4.pdb. dna binding protein 12-may-01 1in4 Co
  Title: thermotoga maritima ruvb holliday junction branch migration motor
  Author: c. d. putnam, j. a. tainer
  Keywords: winged-helix domain, atp hydrolysis, walker a, walker b, sensor 1, sensor 2, arginine finger, holliday junction, branch migration, dna translocase
  
• 1jo4.pdb. antibiotic 26-jul-01 1jo4 (NMR, minimized average structure)
  Title: gramicidin c in sodium dodecyl sulfate micelles (nmr)
  Author: l. e. townsley, w. a. tucker, j. f. hinton
  Keywords: right handed, beta-6.3 helix, linear gramicidin, peptide antibiotic, membrane ion channel, sds micelles
  
• 1jp4.pdb. hydrolase 01-aug-01 1jp4 Mg
  Title: crystal structure of an enzyme displaying both inositol- polyphosphate 1-phosphatase and 3'-phosphoadenosine-5'- phosphate phosphatase activities
  Author: s. patel, l. yenush, p. l. rodriguez, r. serrano, t. l. blundell
  Keywords: sugar nucleotidase fold
  
• 1j74.pdb. unknown function 15-may-01 1j74
  Title: crystal structure of mms2
  Author: t. f. moraes, r. a. edwards, s. mckenna, l. pastushok, w. xiao, j. n. m. glover, m. j. ellison
  Keywords: uev, ubiquitin, ubc, dna repair
  
• 1j7d.pdb. unknown function 16-may-01 1j7d
  Title: crystal structure of hmms2-hubc13
  Author: t. f. moraes, r. a. edwards, s. mckenna, l. pashushok, w. xiao, j. n. m. glover, m. j. ellison
  Keywords: ubc, dna repair, traf6, nfkb,
  
• 1fjd.pdb. isomerase 08-aug-00 1fjd (NMR, 20 structures)
  Title: human parvulin-like peptidyl prolyl cis/trans isomerase, hpar14
  Author: t. terada, m. shirouzu, y. fukumori, f. fujimori, y. ito, t. kigawa, s. yokoyama, t. uchida
  Keywords: peptidyl prolyl cis/trans isomerase
  
• 1hau.pdb. reductase 09-apr-01 1hau Cu
  Title: x-ray structure of a blue copper nitrite reductase at high ph and in copper free form at 1.9a resolution
  Author: m. j. ellis, f. e. dodd, r. w. strange, m. prudencio, r. r. sawerseady, s. s. hasnain
  Keywords: copper, blue copper, oxidoreductase
  
• 1hx5.pdb. chaperone 11-jan-01 1hx5
  Title: crystal structure of m. tuberculosis chaperonin-10
  Author: b. taneja, s. c. mande
  Keywords: mobile loop
  
• 1in5.pdb. dna binding protein 12-may-01 1in5
  Title: thermogota maritima ruvb a156s mutant
  Author: c. d. putnam, s. b. clancy, h. tsuruta, s. gonzalez, j. g. wetmur, j. a. tainer
  Keywords: winged-helix domain, holliday junction, branch migration, walker a, walker b, sensor 1, sensor 2, arginine finger
  
• 1ie5.pdb. cell adhesion 06-apr-01 1ie5 (NMR, 20 structures)
  Title: nmr structure of the third immunoglobulin domain from the neural cell adhesion molecule.
  Author: a. r. atkins, j. chung, s. deechongkit, e. b. little, g. m. edelman, p. e. wright, b. a. cunningham, h. j. dyson
  
  
• 1iee.pdb. hydrolase 09-apr-01 1iee Cl Na
  Title: structure of tetragonal hen egg white lysozyme at 0.94 a from crystals grown by the counter-diffusion method
  Author: c. sauter, f. otalora, j. -a. gavira, o. vidal, r. giege, j. -m. garcia- ruiz
  Keywords: 1,4-beta-n-acetylmuramidase c, hydrolase
  
• 1i6u.pdb. ribosome 05-mar-01 1i6u Se
  Title: rna-protein interactions: the crystal structure of ribosomal protein s8/rrna complex from methanococcus jannaschii
  Author: s. tishchenko, a. nikulin, n. fomenkova, n. nevskaya, o. nikonov, p. dumas, h. moine, b. ehresmann, c. ehresmann, w. piendl, v. lamzin, m. garber, s. nikonov
  Keywords: ribosome, ribosomal protein s8, rna, x-ray crystallography
  
• 1i3u.pdb. immune system 16-feb-01 1i3u
  Title: three-dimensional structure of a llama vhh domain complexed with the dye rr1
  Author: s. spinelli, m. tegoni, l. frenken, c. van vliet, c. cambillau
  Keywords: vhh fragment, lama glama
  
• 1joe.pdb. structural genomics 27-jul-01 1joe Hg Zn
  Title: crystal structure of autoinducer-2 production protein (luxs) from heamophilus influenzae
  Author: c. c. h. chen, j. f. parsons, k. lim, c. lehmann, a. tempczyk, e. eisenstein, o. herzberg
  Keywords: hi0491, structural genomics, twinned crystal
  
• 1jbe.pdb. signaling protein 04-jun-01 1jbe
  Title: 1.08 a structure of apo-chey reveals meta-active conformation
  Author: m. simonovic, k. volz
  Keywords: chemotaxis
  
• 1j7u.pdb. transferase 18-may-01 1j7u Mg
  Title: crystal structure of 3',5"-aminoglycoside phosphotransferase type iiia amppnp complex
  Author: d. l. burk, w. c. hon, a. k. -w. leung, a. m. berghuis
  Keywords: kinase, atp-binding
  
• 1in6.pdb. dna binding protein 12-may-01 1in6 Co
  Title: thermotoga maritima ruvb k64r mutant
  Author: c. d. putnam, s. b. clancy, h. tsuruta, j. g. wetmur, j. a. tainer
  Keywords: winged-helix domain, holliday junction, branch migration, walker a, walker b, sensor 1, sensor 2, arginine finger
  
• 1i3v.pdb. immune system 16-feb-01 1i3v
  Title: three-dimensional structure of a lama vhh domain unliganded
  Author: s. spinelli, m. tegoni, l. frenken, c. van vliet, c. cambillau
  Keywords: domain vhh, lama
  
• 1e66.pdb. cholinesterase 08-aug-00 1e66 Cl
  Title: structure of acetylcholinesterase complexed with (-)-huprine x at 2.1a resolution
  Author: h. dvir, m. harel, i. silman, j. l. sussman
  Keywords: huprine x, alzheimer's disease, chemical hybrid
  
• 1f1f.pdb. electron transport 18-may-00 1f1f Fe
  Title: crystal structure of cytochrome c6 from arthrospira maxima
  Author: c. a. kerfeld, a. a. serag, m. r. sawaya, d. w. krogmann, t. o. yeates
  Keywords: heme, protein structure, cyanobacteria, photosynthesis
  
• 1haw.pdb. reductase 09-apr-01 1haw Cu
  Title: x-ray structure of a blue copper nitrite reductase at high ph and in copper free form at 1.9a resolution
  Author: m. j. ellis, f. e. dodd, r. w. strange, m. prudencio, r. r. sawerseady, s. s. hasnain
  Keywords: copper, blue copper, oxidoreductase
  
• 1in7.pdb. dna binding protein 12-may-01 1in7
  Title: thermotoga maritima ruvb r170a
  Author: c. d. putnam, s. b. clancy, h. tsuruta, j. g. wetmur, j. a. tainer
  Keywords: winged-helix domain, holliday junction, branch migration, dna translocase, walker a, walker b, sensor 1, sensor 2, arginine finger
  
• 1iaw.pdb. hydrolase/dna 23-mar-01 1iaw
  Title: crystal structure of naei complexed with 17mer dna
  Author: q. huai, j. d. colandene, m. d. topal, h. ke
  
  
• 1i57.pdb. hydrolase 26-feb-01 1i57 Cl Mg
  Title: crystal structure of apo human ptp1b (c215s) mutant
  Author: g. scapin, s. patel, v. patel, b. kennedy, e. asante-appiah
  Keywords: conformational change, wpd loop, phosphate-binding loop
  
• 1jc7.pdb. cell adhesion 08-jun-01 1jc7 Cl
  Title: the laminin-binding domain of agrin is structurally related to n-timp-1
  Author: j. stetefeld
  Keywords: agrin, interaction coiled-doil proteins with globular proteins, ob-fold, timp
  
• 1qsw.pdb. hydrolase 24-jun-99 1qsw
  Title: crystal structure analysis of a human lysozyme mutant w64c c65a
  Author: k. inaka, e. kanaya, m. kikuchi, k. miki
  
  
• 1hax.pdb. hydrolase 10-apr-01 1hax Ca
  Title: snapshots of serine protease catalysis: (a) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 at ph 5
  Author: r. c. wilmouth, k. edman, r. neutze, p. a. wright, i. j. clifton, t. r. schneider, c. j. schofield, j. hajdu
  Keywords: hydrolase (serine proteinase)
  
• 1in8.pdb. dna binding protein 12-may-01 1in8
  Title: thermotoga maritima ruvb t158v
  Author: c. d. putnam, s. b. clancy, h. tsuruta, j. g. wetmur, j. a. tainer
  Keywords: winged-helix domain, dna translocase, holliday junction, branch migration motor, walker a, walker b, sensor 1, sensor 2, arginine finger
  
• 1e5x.pdb. threonine biosynthesis 04-aug-00 1e5x Se
  Title: structure of threonine synthase from arabidopsis thaliana
  Author: k. thomazeau, g. curien, r. dumas, v. biou
  Keywords: plp enzyme, s-adenosyl-methionine, allostery
  
• 1hay.pdb. hydrolase 10-apr-01 1hay Ca
  Title: snapshots of serine protease catalysis: (b) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to ph 10 for 10 seconds
  Author: r. c. wilmouth, k. edman, r. neutze, p. a. wright, i. j. clifton, t. r. schneider, c. j. schofield, j. hajdu
  Keywords: hydrolase (serine proteinase)
  
• 1i19.pdb. oxidoreductase 31-jan-01 1i19 Mn As
  Title: crystal structure of cholesterol oxidase from b.sterolicum
  Author: r. coulombe, k. q. yue, s. ghisla, a. vrielink
  Keywords: covalent fad, flavoenzyme
  
• 1jmy.pdb. hydrolase 20-jul-01 1jmy
  Title: truncated recombinant human bile salt stimulated lipase
  Author: s. a. moore, r. l. kingston, k. m. loomes, o. hernell, l. blackberg, h. m. baker, e. n. baker
  Keywords: bsdl, bile salt dependent lipase, bile salt stimulated lipase
  
• 1j7i.pdb. transferase 16-may-01 1j7i
  Title: crystal structure of 3',5"-aminoglycoside phosphotransferase type iiia apoenzyme
  Author: d. l. burk, w. c. hon, a. k. -w. leung, a. m. berghuis
  Keywords: kinase, atp-binding
  
• 1haz.pdb. serine proteinase 10-apr-01 1haz Ca
  Title: snapshots of serine protease catalysis: (c) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to ph 9 for 1 minute
  Author: r. c. wilmouth, k. edman, r. neutze, p. a. wright, i. j. clifton, t. r. schneider, c. j. schofield, j. hajdu
  Keywords: hydrolase (serine proteinase)
  
• 1i7z.pdb. immune system 12-mar-01 1i7z
  Title: antibody gnc92h2 bound to ligand
  Author: n. a. larsen, i. a. wilson
  Keywords: antibody, chimera
  
• 1igk.pdb. photosynthesis/electron transport 17-apr-01 1igk Mg Mn Fe Cd (theoretical model)
  Title: modeled complex between photosystem ii and cytochrome c549
  Author: c. a. kerfeld, m. r. sawaya, t. o. yeates, d. w. krogmann
  
  
• 1j7k.pdb. dna binding protein 16-may-01 1j7k Co
  Title: thermotoga maritima ruvb p216g mutant
  Author: c. d. putnam, s. b. clancy, h. tsuruta, j. g. wetmur, j. a. tainer
  Keywords: winged-helix domain, dna translocase, holliday junction, branch migration, walker a, walker b, sensor 1, sensor 2, arginine finger
  
• 1j7l.pdb. transferase 17-may-01 1j7l Mg
  Title: crystal structure of 3',5"-aminoglycoside phosphotransferase type iiia adp complex
  Author: d. l. burk, w. c. hon, a. k. -w. leung, a. m. berghuis
  Keywords: kinase, atp-binding
  
• 1h8n.pdb. antibody 14-feb-01 1h8n
  Title: three-dimensional structure of anti-ampicillin single chain fv fragment from phage-displayed murine antibody libraries
  Author: s. jung, s. spinelli, b. schimmele, a. honegger, l. pugliese, c. cambillau, a. pluckthun
  Keywords: framework
  
• 1ibn.pdb. virus/viral protein 28-mar-01 1ibn (NMR, 20 structures)
  Title: nmr structure of hemagglutinin fusion peptide in dpc micelles at ph 5
  Author: x. han, j. h. bushweller, d. s. cafiso, l. k. tamm
  
  
• 1i8n.pdb. toxin 15-mar-01 1i8n
  Title: crystal structure of leech anti-platelet protein
  Author: e. g. huizinga, a. schouten, t. m. connolly, j. kroon, j. j. sixma, p. gros
  
  
• 1h8o.pdb. antibody 14-feb-01 1h8o
  Title: three-dimensional structure of anti-ampicillin single chain fv fragment.
  Author: j. burmester, s. spinelli, l. pugliese, a. krebber, a. honegger, s. jung, b. schimmele, c. cambillau, a. pluckthun
  Keywords: fv fragment, anti-ampicillin
  
• 1ibo.pdb. virus/viral protein 28-mar-01 1ibo (NMR, 20 structures)
  Title: nmr structure of hemagglutinin fusion peptide in dpc micelles at ph 7.4
  Author: x. han, j. h. bushweller, d. s. cafiso, l. k. tamm
  
  
• 1jno.pdb. antibiotic 24-jul-01 1jno (NMR, minimized average structure)
  Title: gramicidin a in sodium dodecyl sulfate micelles (nmr)
  Author: w. a. tucker, s. sham, l. e. townsley, j. f. hinton
  Keywords: right handed, beta-6.3 helix, linear gramicidin, peptide antibiotic, membrane ion channel, sds micelles
  
• 1eho.pdb. hydrolase 22-feb-00 1eho (theoretical model)
  Title: model of (-)-cocaine-bound bche complex.
  Author: h. sun, j. el yazal, w. s. brimijoin, y. p. pang