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Bibliography on structural studies of cytochrome cd1 nitrite reductase

  1. Akey, C.W., Moffat, K., Wharton, D.C. and Edelstein, S.J. (1980) Characterization of crystals of a cytochrome oxidase (nitrite reductase) from Pseudomonas aeruginosa by X­ray diffraction and electron microscopy. J. Mol. Biol. 136, 19-43.
  2. Baker, S.C., Saunders, N.F.W., Willis, A.C., Ferguson, S.J., Hajdu, J. and Fülöp, V. (1997) Cytochrome cd1 structure: Unusual haem environments in a nitrite reductase and analysis of factors contributing to ß­propeller folds. J. Mol. Biol. 269, 440-455.
  3. Bellelli, A., Brzezinski, P., Arese, M., Cutruzzolà, F., Silvestrini, M.­C. and Brunori, M. (1996) Electron transfer in zinc­reconstituted nitrite reductase from Pseudomonas aeruginosa. Biochem. J. 319, 407-410.
  4. Berger, H. and Wharton, D.C. (1980) Small­angle X­ray scattering studies of oxidized and reduced cytochrome oxidase from Pseudomonas aeruginosa. Biochim. Biophys. Acta 622, 355-359.
  5. Chang, C.K. and Wu, W. (1986) The porphinedione structure of heme d1. Synthesis and spectral properties of model compounds of the prosthetic group of dissimilatory nitrite reductase. J. Biol. Chem. 261, 8593-8596.
  6. Chang, C.K., Timkovich, R. and Wu, W. (1986) Evidence that heme d1 is a 1,3­porphyrindione. Biochemistry 25, 8447-8453.
  7. Cheesman, M.R., Ferguson, S.J., Moir, J.W.B., Richardson, D.J., Zumft, W.G. and Thomson, A.J. (1997) Two enzymes with a common function but different heme ligands in the forms as isolated. Optical and magnetic properties of the heme groups in the oxidized forms of nitrite reductase, cytochrome cd1, from Pseudomonas stutzeri and Thiosphaera pantotropha. Biochemistry 36, 16267-16276.
  8. Ching, Y., Ondrias, M.R., Rousseau, D.L., Muhoberac, B.B. and Wharton, D.C. (1982) Resonance Raman spectra of heme c and heme d1 in Pseudomonas cytochrome oxidase. FEBS Lett. 138, 239-244.
  9. Cotton, T.M., Timkovich, R. and Cork, M.S. (1981) Resonance Raman and surface­enhanced resonance Raman studies of cytochrome cd1. FEBS Lett. 133, 39-44.
  10. Cutruzzolà, F., Arese, M., Grasso, S., Bellelli, A. and Brunori, M. (1997) Mutagenesis of nitrite reductase from Pseudomonas aeruginosa: tyrosine­10 in the c heme domain is not involved in catalysis. FEBS Lett. 412, 365-369.
  11. Doi, M., Shioi, Y., Morita, M. and Takamiya, K. (1989) Two types of cytochrome cd1 in the aerobic photosynthetic bacterium, Erythrobacter sp. OCh 114. Eur. J. Biochem. 184, 521-527.
  12. Fülöp, V., Moir, J.W.B., Ferguson, S.J. and Hajdu, J. (1993) Crystallization and preliminary crystallographic study of cytochrome cd1 nitrite reductase from Thiosphaera pantotropha. J. Mol. Biol. 232, 1211-1212.
  13. Fülöp, V., Moir, J.W.B., Ferguson, S.J. and Hajdu, J. (1995) The anatomy of a bifunctional enzyme: structural basis for reduction of oxygen to water and synthesis of nitric oxide by cytochrome cd1. Cell 81, 369-377.
  14. Hill, K.E. and Wharton, D.C. (1978) Reconstitution of the apoenzyme of cytochrome oxidase from Pseudomonas aeruginosa with heme d1 and other heme groups. J. Biol. Chem. 253, 489-495.
  15. Horowitz, P., Muhoberac, B.B., Falksen, K. and Wharton, D.C. (1986) Perturbation of Pseudomonas cytochrome oxidase by guanidine hydrochloride to detect differential stabilization of the heme d1 and heme c moieties. Biochim. Biophys. Acta 871, 142-148.
  16. Huynh, B.­H., Liu, M.C., Moura, J.J.G., Moura, I., Ljungdahl, P.O., Münck, E., Payne, W.J., Peck, H.D., Jr., DerVartanian, D.V. and LeGall, J. (1982) Mössbauer and EPR studies on nitrite reductase from Thiobacillus denitrificans. J. Biol. Chem. 257, 9576-9581.
  17. Johnson, M.K., Thomson, A.J., Walsh, T.A., Barber, D. and Greenwood, C. (1980) Electron paramagnetic resonance studies on Pseudomonas nitrosyl nitrite reductase. Evidence for multiple species in the electron paramagnetic resonance spectra of nitrosyl haemoproteins. Biochem. J. 189, 285-294.
  18. Liu, M.C., Huynh, B.­H., Payne, W.J., Peck, H.D., Jr., DerVartanian, D.V. and LeGall, J. (1987) Optical, EPR and Mössbauer spectroscopic studies on the NO derivatives of cytochrome cd1 from Thiobacillus denitrificans. Eur. J. Biochem. 169, 253-258.
  19. Kobayashi, K., Koppenhöfer, A., Ferguson, S.J. and Tagawa, S. (1997) Pulse radiolysis studies on cytochrome cd1 nitrite reductase from Thiosphaera pantotropha: Evidence for a fast intramolecular electron transfer from c­heme to d1­heme. Biochemistry 36, 13611-13616.
  20. Makinen, M.W., Schichman, S.A., Hill, S.C. and Gray, H.B. (1983) Heme­heme orientation and electron transfer kinetic behavior of multisite oxidation­reduction enzymes. Science 222, 929-931.
  21. Mitra, S. and Bersohn, R. (1980) Location of the heme groups in cytochrome cd1 oxidase from Pseudomonas aeruginosa. Biochemistry 19, 3200-3203.
  22. Muhoberac, B.B. and Wharton, D.C. (1980) EPR study of heme·NO complexes of ascorbic acid­reduced Pseudomonas cytochrome oxidase and corresponding model complexes. J. Biol. Chem. 255, 8437-8442.
  23. Muhoberac, B.B. and Wharton, D.C. (1983) Electron paramagnetic resonance study of the interaction of some anionic ligands with oxidized Pseudomonas cytochrome oxidase. J. Biol. Chem. 258, 3019-3027.
  24. Nurizzo, D., Silvestrini, M.­C., Mathieu, M., Cutruzzolà, F., Bourgeois, D., Fülöp, V., Hajdu, J., Brunori, M., Tegoni, M. and Cambillau, C. (1997) N­terminal arm exchange is observed in the 2.15 Å crystal structure of oxidized nitrite reductase from Pseudomonas aeruginosa. Structure 5, 1157-1171.
  25. Nurizzo, D., Cutruzzolà, F., Arese, M., Bourgeois, D., Brunori, M., Cambillau, C. and Tegoni, M. (1998) Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa. Biochemistry 37, 13987-13996.
  26. Saraste, M., Virtanen, I. and Kuronen, T. (1977) The quatenary structure of Pseudomonas cytochrome oxidase studied by electron microscopy. Biochim. Biophys. Acta 492, 156-162.
  27. Silvestrini, M.­C., Tordi, M.G., Musci, G. and Brunori, M. (1990) The reaction of Pseudomonas nitrite reductase and nitrite. A stopped­flow and EPR study. J. Biol. Chem. 265, 11783-11787.
  28. Silvestrini, M.­C., Cutruzzolà, F., D'Alessandro, R., Brunori, M., Fochesato, N. and Zennaro, E. (1992) Expression of Pseudomonas aeruginosa nitrite reductase in Pseudomonas putida and characterization of the recombinant protein. Biochem. J. 285, 661-666.
  29. Silvestrini, M.­C., Tordi, M.G., Citro, G., Vecchini, P. and Brunori, M. (1995) Monomeric Pseudomonas aeruginosa nitrite reductase: Preparation, characterization, and kinetic properties. J. Inorg. Biochem. 57, 169-181.
  30. Steup, M.B. and Muhoberac, B.B. (1989) Preparation and spectral characterization of the heme d1·apomyoglobin complex: An unusual protein environment for the substrate­binding heme of Pseudomonas cytochrome oxidase. J. Inorg. Biochem. 37, 233-257.
  31. Sutherland, J., Greenwood, C., Peterson, J. and Thomson, A.J. (1986) An investigation of the ligand­binding properties of Pseudomonas aeruginosa nitrite reductase. Biochem. J. 233, 893-898.
  32. Takano, T., Dickerson, R.E., Schichman, S.A. and Meyer, T.E. (1979) Crystal data, molecular dimensions and molecular symmetry in cytochrome oxidase from Pseudomonas aeruginosa. J. Mol. Biol. 133, 185-188.
  33. Tegoni, M., Silvestrini, M.­C., Lamzin, V.S., Brunori, M. and Cambillau, C. (1994) Crystallization and preliminary X­ray analysis of a new crystal form of nitrite reductase from Pseudomonas aeruginosa. J. Mol. Biol. 243, 347-350.
  34. Timkovich, R. (1986) 1H NMR investigation of cytochrome cd1: Complexes with electron­donor proteins. Biochemistry 25, 1089-1093.
  35. Timkovich, R. and Carlin, R.T. (1992) A novel derivative of the prosthetic group heme d1: S­methylporphyrindione d1. Biochim. Biophys. Acta 1116, 24-26.
  36. Timkovich, R. and Cork, M.S. (1982a) Nitrogen­15 nuclear magnetic resonance investigation of nitrite reductase-substrate interaction. Biochemistry 21, 3794-3797.
  37. Timkovich, R. and Cork, M.S. (1982b) Proton nuclear magnetic resonance spectra of Pseudomonas aeruginosa ferricytochrome cd1. Biochemistry 21, 5119-5123.
  38. Timkovich, R. and Cork, M.S. (1983) Magnetic susceptibility measurements on Pseudomonas cytochrome cd1. Biochim. Biophys. Acta 742, 162-168.
  39. Timkovich, R., Cork, M.S. and Taylor, P.V. (1984a) Proposed structure for the noncovalently associated heme prosthetic group of dissimilatory nitrite reductases. Identification of substituents. J. Biol. Chem. 259, 1577-1585.
  40. Timkovich, R., Cork, M.S. and Taylor, P.V. (1984a) Proposed structure for the noncovalently associated heme prosthetic group of dissimilatory nitrite reductases. Configuration of substituents of acrylochlorin. J. Biol. Chem. 259, 15089-15093.
  41. Timkovich, R., Cork, M.S. and Taylor, P.V. (1985) 1H NMR spectroscopy of cytochrome cd1 derivatives. Arch. Biochem. Biophys. 240, 689-697.
  42. Tordi, M.G., Silvestrini, M.­C., Colosimo, A., Provencher, S. and Brunori, M. (1984) Circular­dichroic properties and secondary structure of Pseudomonas aeruginosa soluble cytochrome c oxidase. Biochem. J. 218, 907-912.
  43. Walsh, T.A., Johnson, M.K., Greenwood, C., Barber, D., Springall, J.P. and Thomson, A.J. (1979) Some magnetic properties of Pseudomonas cytochrome oxidase. Biochem. J. 177, 29-39.
  44. Walsh, T.A., Johnson, M.K., Thomson, A.J., Barber, D. and Greenwood, C. (1981a) The characterization and magnetic properties of the azide and imidazole derivatives of Pseudomonas nitrite reductase. J. Inorg. Biochem. 14, 1-14.
  45. Walsh, T.A., Johnson, M.K., Barber, D., Thomson, A.J., and Greenwood, C. (1981b) Studies on heme d1 extracted from Pseudomonas aeruginosa nitrite reductase. J. Inorg. Biochem. 14, 15-31.
  46. Wang, Y. and Averill, B.A. (1996) Direct observation by FTIR spectroscopy of the ferrous heme-NO+ intermediate in reduction of nitrite by a dissimilatory heme cd1 nitrite reductase. J. Am. Chem. Soc. 118, 3972-3973.
  47. Weeg­Aerssens, E., Wu, W.S., Ye, R.W., Tiedje, J.M. and Chang, C.K. (1991) Purification of cytochrome cd1 nitrite reductase from Pseudomonas stutzeri JM300 and reconstitution with native and synthetic heme d1. J. Biol. Chem. 266, 7496-7502.
  48. Williams, P.A., Fülöp, V., Garman, E.F., Saunders, N.F.W., Ferguson, S.J. and Hajdu, J. (1997) Haem­ligand switching during catalysis in crystals of a nitrogen­cycle enzyme. Nature 389, 406-412.
  49. Wu, W. and Chang, C.K. (1987) Structure of dioneheme. Total synthesis of the green heme prosthetic group in cytochrome cd1 dissimilatory nitrite reductase. J. Am. Chem. Soc. 109, 3149-3150.
  50. Yap­Bondoc, F. and Timkovich, R. (1990) Inactivation of cytochrome cd1 by hydrazines. J. Biol. Chem. 265, 4247-4253.
  51. Yap­Bondoc, F., Bondoc, L.L., Timkovich, R., Baker, D.C. and Hebbler, A. (1990) C­methylation occurs during the biosynthesis of heme d1. J. Biol. Chem. 265, 13498-13500.